Query 016555
Match_columns 387
No_of_seqs 234 out of 1083
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:32:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.9E-14 6.4E-19 108.3 6.4 52 282-333 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.5 3E-13 1E-17 104.0 9.8 58 281-338 1-58 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.4 4.8E-13 1.6E-17 102.0 9.3 57 282-338 1-57 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.4 6.5E-13 2.2E-17 101.7 7.0 57 282-338 1-57 (62)
5 2dgc_A Protein (GCN4); basic d 99.3 1.8E-12 6.3E-17 99.9 6.8 50 284-333 11-60 (63)
6 1ci6_A Transcription factor AT 99.2 2.3E-11 8E-16 93.6 7.3 57 281-337 1-57 (63)
7 1gd2_E Transcription factor PA 99.2 9.8E-11 3.4E-15 92.1 8.5 61 284-344 10-70 (70)
8 1hjb_A Ccaat/enhancer binding 99.0 8.6E-10 2.9E-14 90.1 8.9 65 280-344 13-77 (87)
9 1gu4_A CAAT/enhancer binding p 99.0 1.9E-09 6.7E-14 86.3 8.8 56 282-337 15-70 (78)
10 3a5t_A Transcription factor MA 98.8 1.2E-10 4.1E-15 98.4 -3.8 60 275-334 30-89 (107)
11 2wt7_B Transcription factor MA 98.6 3.1E-07 1E-11 75.4 10.1 68 276-350 21-88 (90)
12 2oqq_A Transcription factor HY 97.2 0.00059 2E-08 48.4 5.6 36 302-337 2-37 (42)
13 1skn_P DNA-binding domain of S 96.9 0.00041 1.4E-08 56.8 2.8 33 278-310 58-90 (92)
14 1deb_A APC protein, adenomatou 96.7 0.0096 3.3E-07 43.9 8.1 48 305-352 5-52 (54)
15 2jee_A YIIU; FTSZ, septum, coi 96.3 0.021 7.3E-07 45.9 8.7 49 304-352 21-76 (81)
16 2jee_A YIIU; FTSZ, septum, coi 96.2 0.026 9E-07 45.4 8.7 40 303-342 6-45 (81)
17 3a7p_A Autophagy protein 16; c 96.1 0.1 3.5E-06 46.4 12.8 81 278-358 64-144 (152)
18 3s9g_A Protein hexim1; cyclin 95.9 0.028 9.7E-07 46.7 8.1 50 303-352 37-93 (104)
19 2c9l_Y EB1, zebra, BZLF1 trans 95.8 0.042 1.4E-06 41.2 7.9 27 286-312 5-31 (63)
20 3hnw_A Uncharacterized protein 95.8 0.049 1.7E-06 47.5 9.5 54 300-353 72-125 (138)
21 3he5_A Synzip1; heterodimeric 95.7 0.037 1.3E-06 39.4 6.8 45 304-348 4-48 (49)
22 2w6a_A ARF GTPase-activating p 95.5 0.054 1.9E-06 41.2 7.4 40 306-345 23-62 (63)
23 2oxj_A Hybrid alpha/beta pepti 95.5 0.016 5.6E-07 39.3 4.1 29 303-331 1-29 (34)
24 3m48_A General control protein 95.5 0.014 4.9E-07 39.4 3.7 28 304-331 1-28 (33)
25 3oja_B Anopheles plasmodium-re 95.4 0.15 5.1E-06 52.0 13.1 48 305-352 532-579 (597)
26 3cvf_A Homer-3, homer protein 95.2 0.033 1.1E-06 44.6 5.8 54 304-357 7-60 (79)
27 1kd8_B GABH BLL, GCN4 acid bas 95.1 0.031 1.1E-06 38.4 4.5 31 303-333 1-31 (36)
28 3vmx_A Voltage-gated hydrogen 95.0 0.086 3E-06 38.5 7.0 42 309-350 3-44 (48)
29 3hnw_A Uncharacterized protein 95.0 0.18 6.1E-06 44.0 10.3 53 302-354 81-133 (138)
30 3a2a_A Voltage-gated hydrogen 94.9 0.06 2.1E-06 40.3 6.1 42 309-350 10-51 (58)
31 1go4_E MAD1 (mitotic arrest de 94.8 0.076 2.6E-06 44.3 7.2 20 331-350 75-94 (100)
32 1kd8_A GABH AIV, GCN4 acid bas 94.8 0.028 9.7E-07 38.5 3.7 31 304-334 2-32 (36)
33 3c3f_A Alpha/beta peptide with 94.7 0.037 1.3E-06 37.5 4.1 29 303-331 1-29 (34)
34 3cve_A Homer protein homolog 1 94.5 0.14 4.6E-06 40.4 7.6 52 306-357 3-54 (72)
35 1ci6_A Transcription factor AT 94.4 0.11 3.7E-06 39.5 6.7 41 309-349 22-62 (63)
36 3oja_B Anopheles plasmodium-re 94.3 0.24 8E-06 50.6 10.9 45 302-346 508-552 (597)
37 3mq7_A Bone marrow stromal ant 94.2 0.21 7.1E-06 42.7 8.6 40 310-349 71-110 (121)
38 3c3g_A Alpha/beta peptide with 94.2 0.057 1.9E-06 36.4 4.1 27 305-331 2-28 (33)
39 1t2k_D Cyclic-AMP-dependent tr 94.2 0.27 9.3E-06 36.8 8.4 36 312-347 24-59 (61)
40 2bni_A General control protein 94.1 0.056 1.9E-06 36.7 3.9 29 303-331 1-29 (34)
41 1uo4_A General control protein 94.0 0.062 2.1E-06 36.5 3.9 28 304-331 2-29 (34)
42 2wt7_A Proto-oncogene protein 93.9 0.45 1.6E-05 35.9 9.2 36 312-347 25-60 (63)
43 2hy6_A General control protein 93.8 0.07 2.4E-06 36.2 3.9 28 304-331 2-29 (34)
44 3m91_A Proteasome-associated A 93.8 0.23 8E-06 36.6 7.1 40 304-343 10-49 (51)
45 3m9b_A Proteasome-associated A 93.7 0.054 1.8E-06 51.7 4.5 42 303-344 54-95 (251)
46 3m91_A Proteasome-associated A 93.7 0.26 8.7E-06 36.4 7.1 42 309-350 8-49 (51)
47 2oqq_A Transcription factor HY 93.6 0.22 7.5E-06 35.3 6.4 37 312-348 5-41 (42)
48 1hjb_A Ccaat/enhancer binding 93.6 0.56 1.9E-05 38.0 9.8 28 321-348 40-67 (87)
49 2wq1_A General control protein 93.5 0.091 3.1E-06 35.4 4.1 27 305-331 2-28 (33)
50 3efg_A Protein SLYX homolog; x 93.4 0.19 6.6E-06 39.8 6.6 50 303-352 14-63 (78)
51 2wt7_B Transcription factor MA 93.4 0.47 1.6E-05 38.8 9.0 57 295-354 29-85 (90)
52 2yy0_A C-MYC-binding protein; 93.3 0.14 4.9E-06 37.8 5.3 28 310-337 19-46 (53)
53 1jnm_A Proto-oncogene C-JUN; B 92.8 0.3 1E-05 36.7 6.6 30 320-349 25-54 (62)
54 2yy0_A C-MYC-binding protein; 92.8 0.16 5.5E-06 37.5 5.0 32 317-348 19-50 (53)
55 2dfs_A Myosin-5A; myosin-V, in 92.7 0.75 2.6E-05 51.7 12.5 19 333-351 1025-1043(1080)
56 1gu4_A CAAT/enhancer binding p 92.5 0.94 3.2E-05 36.0 9.4 27 304-330 44-70 (78)
57 4h22_A Leucine-rich repeat fli 92.3 0.55 1.9E-05 39.3 8.1 49 305-353 32-80 (103)
58 2kz5_A Transcription factor NF 92.2 0.011 3.9E-07 48.2 -2.1 25 279-303 63-87 (91)
59 1gd2_E Transcription factor PA 92.2 0.58 2E-05 36.5 7.7 7 312-318 31-37 (70)
60 1t6f_A Geminin; coiled-coil, c 92.0 0.24 8.1E-06 34.1 4.5 30 316-345 6-35 (37)
61 1fmh_A General control protein 91.6 0.22 7.4E-06 32.9 3.9 30 304-333 2-31 (33)
62 2dgc_A Protein (GCN4); basic d 91.6 0.75 2.5E-05 34.9 7.5 32 316-347 29-60 (63)
63 1gmj_A ATPase inhibitor; coile 91.5 1.5 5.1E-05 35.4 9.5 54 290-350 24-77 (84)
64 4emc_A Monopolin complex subun 91.1 0.62 2.1E-05 42.7 7.8 30 307-336 24-53 (190)
65 4etp_A Kinesin-like protein KA 90.8 0.66 2.3E-05 46.6 8.5 58 300-357 7-64 (403)
66 2v66_B Nuclear distribution pr 90.3 6.5 0.00022 33.1 12.9 48 305-352 37-84 (111)
67 2r2v_A GCN4 leucine zipper; co 90.3 0.36 1.2E-05 32.8 4.1 28 304-331 2-29 (34)
68 2w83_C C-JUN-amino-terminal ki 90.0 0.48 1.6E-05 37.7 5.3 38 308-345 35-72 (77)
69 3iv1_A Tumor susceptibility ge 89.8 4.6 0.00016 32.1 10.8 53 300-352 22-74 (78)
70 1uii_A Geminin; human, DNA rep 89.6 1.8 6.1E-05 34.9 8.4 36 314-349 43-78 (83)
71 2zxx_A Geminin; coiled-coil, c 89.5 1.3 4.5E-05 35.3 7.5 36 315-350 32-67 (79)
72 3u06_A Protein claret segregat 89.4 0.89 3E-05 45.9 8.2 55 303-357 10-64 (412)
73 3nmd_A CGMP dependent protein 89.4 0.59 2E-05 36.8 5.3 24 303-326 40-63 (72)
74 3q8t_A Beclin-1; autophagy, AT 89.4 2 6.8E-05 35.1 8.8 26 304-329 26-51 (96)
75 1ic2_A Tropomyosin alpha chain 89.4 2.4 8.1E-05 33.3 9.0 50 303-352 20-69 (81)
76 3nmd_A CGMP dependent protein 89.3 1.6 5.4E-05 34.3 7.7 35 301-335 31-65 (72)
77 3m9b_A Proteasome-associated A 89.1 0.36 1.2E-05 46.1 4.7 44 309-352 53-96 (251)
78 1wt6_A Myotonin-protein kinase 89.1 1.6 5.4E-05 35.1 7.6 60 290-352 14-73 (81)
79 3i00_A HIP-I, huntingtin-inter 89.0 1.7 5.9E-05 37.0 8.5 47 298-344 35-81 (120)
80 2eqb_B RAB guanine nucleotide 89.0 2.4 8.2E-05 35.1 8.9 20 330-349 75-94 (97)
81 1nkp_B MAX protein, MYC proto- 89.0 1.3 4.5E-05 34.7 7.2 33 319-351 49-81 (83)
82 4h22_A Leucine-rich repeat fli 88.8 2.1 7.3E-05 35.7 8.6 49 302-350 36-84 (103)
83 3u1c_A Tropomyosin alpha-1 cha 88.8 8 0.00027 31.6 12.1 35 307-341 27-61 (101)
84 2lw1_A ABC transporter ATP-bin 88.8 1.5 5.2E-05 34.9 7.6 54 302-355 21-80 (89)
85 3na7_A HP0958; flagellar bioge 88.8 4.5 0.00015 37.7 12.0 9 372-380 200-208 (256)
86 3efg_A Protein SLYX homolog; x 88.7 1.5 5E-05 34.7 7.2 53 306-358 10-62 (78)
87 3htk_A Structural maintenance 88.5 3.2 0.00011 30.4 8.6 48 301-348 10-57 (60)
88 3ghg_A Fibrinogen alpha chain; 88.5 1.5 5.1E-05 45.9 9.0 38 307-344 114-151 (562)
89 3o0z_A RHO-associated protein 88.4 6 0.00021 35.6 11.9 43 286-328 73-115 (168)
90 1nkp_B MAX protein, MYC proto- 88.3 0.55 1.9E-05 36.9 4.6 23 304-326 48-70 (83)
91 1wlq_A Geminin; coiled-coil; 2 88.3 2.2 7.4E-05 34.4 8.0 34 315-348 36-69 (83)
92 3trt_A Vimentin; cytoskeleton, 88.2 6.5 0.00022 30.1 10.7 56 286-344 21-76 (77)
93 3he5_B Synzip2; heterodimeric 88.2 1.3 4.3E-05 31.9 5.9 32 308-339 15-46 (52)
94 3s9g_A Protein hexim1; cyclin 88.1 2.8 9.4E-05 34.9 8.7 27 303-329 65-91 (104)
95 1joc_A EEA1, early endosomal a 88.1 3.1 0.00011 35.2 9.5 46 303-348 11-56 (125)
96 2oa5_A Hypothetical protein BQ 87.9 0.79 2.7E-05 38.7 5.5 26 303-328 8-33 (110)
97 1jcd_A Major outer membrane li 87.9 2.9 9.8E-05 30.9 7.8 37 304-340 5-41 (52)
98 3ghg_A Fibrinogen alpha chain; 87.8 1.2 4E-05 46.6 7.8 38 321-358 114-151 (562)
99 3he5_B Synzip2; heterodimeric 87.8 2.2 7.5E-05 30.6 6.9 41 307-347 7-47 (52)
100 2v66_B Nuclear distribution pr 87.8 3 0.0001 35.2 9.0 34 312-345 37-70 (111)
101 1ic2_A Tropomyosin alpha chain 87.8 8.4 0.00029 30.1 11.8 61 291-351 15-75 (81)
102 2xdj_A Uncharacterized protein 87.7 5.7 0.00019 31.7 10.2 46 305-350 22-67 (83)
103 3a7o_A Autophagy protein 16; c 87.7 2.1 7.2E-05 33.6 7.3 49 304-352 26-74 (75)
104 3oja_A Leucine-rich immune mol 87.7 5.9 0.0002 39.5 12.8 48 306-353 424-471 (487)
105 3u59_A Tropomyosin beta chain; 87.6 3 0.0001 34.0 8.8 35 306-340 26-60 (101)
106 2v4h_A NF-kappa-B essential mo 87.5 8.1 0.00028 32.6 11.4 64 289-352 31-104 (110)
107 3o0z_A RHO-associated protein 87.0 3.6 0.00012 37.0 9.6 54 292-349 27-80 (168)
108 3u1c_A Tropomyosin alpha-1 cha 86.8 12 0.00039 30.6 12.3 35 304-338 31-65 (101)
109 1nlw_A MAD protein, MAX dimeri 86.7 1.2 4E-05 35.3 5.6 29 321-349 51-79 (80)
110 3mq7_A Bone marrow stromal ant 86.1 15 0.00052 31.3 12.4 36 316-351 70-105 (121)
111 2wvr_A Geminin; DNA replicatio 86.0 2.9 9.8E-05 38.8 8.6 28 318-345 116-143 (209)
112 1lwu_C Fibrinogen gamma chain; 86.0 1.7 5.7E-05 42.8 7.5 47 303-349 12-58 (323)
113 4dzn_A Coiled-coil peptide CC- 85.9 1.5 5.3E-05 28.8 4.8 24 321-344 6-29 (33)
114 1nkp_A C-MYC, MYC proto-oncoge 85.9 3 0.0001 33.3 7.8 33 319-351 54-86 (88)
115 3ra3_A P1C; coiled coil domain 85.9 0.48 1.7E-05 30.2 2.3 26 312-337 2-27 (28)
116 2v71_A Nuclear distribution pr 85.9 13 0.00043 34.1 12.7 45 305-349 90-134 (189)
117 1dip_A Delta-sleep-inducing pe 85.8 0.45 1.5E-05 37.7 2.7 30 318-347 16-45 (78)
118 2j5u_A MREC protein; bacterial 85.8 0.35 1.2E-05 45.7 2.5 35 315-349 24-61 (255)
119 2ve7_C Kinetochore protein NUF 85.5 1.1 3.8E-05 42.4 5.8 73 280-352 118-197 (250)
120 1am9_A Srebp-1A, protein (ster 85.5 3 0.0001 32.8 7.4 65 286-350 6-76 (82)
121 2dfs_A Myosin-5A; myosin-V, in 85.4 5.7 0.0002 44.7 12.4 44 306-349 980-1023(1080)
122 3s4r_A Vimentin; alpha-helix, 85.4 9.6 0.00033 30.8 10.6 31 318-348 57-87 (93)
123 3tnu_B Keratin, type II cytosk 85.4 0.66 2.3E-05 39.4 3.8 26 329-354 80-105 (129)
124 1a93_B MAX protein, coiled coi 85.3 1.4 4.8E-05 30.0 4.6 18 330-347 13-30 (34)
125 1wt6_A Myotonin-protein kinase 85.2 5.7 0.00019 31.8 8.8 54 286-339 21-74 (81)
126 3iv1_A Tumor susceptibility ge 84.9 9.5 0.00033 30.3 10.0 59 297-355 12-70 (78)
127 1p9i_A Cortexillin I/GCN4 hybr 84.8 1.2 4.2E-05 28.9 3.9 22 308-329 4-25 (31)
128 2xdj_A Uncharacterized protein 84.8 8.8 0.0003 30.6 9.9 42 313-354 23-64 (83)
129 3mq9_A Bone marrow stromal ant 84.7 6 0.00021 39.2 11.1 24 330-353 442-465 (471)
130 1dh3_A Transcription factor CR 84.7 2.9 9.8E-05 30.8 6.5 28 325-352 23-50 (55)
131 3oja_A Leucine-rich immune mol 84.6 8.1 0.00028 38.5 12.0 35 300-334 432-466 (487)
132 4b4t_K 26S protease regulatory 84.5 1.4 4.8E-05 44.6 6.4 46 306-351 45-90 (428)
133 1nkp_A C-MYC, MYC proto-oncoge 84.5 1.5 5E-05 35.2 5.3 32 312-343 54-85 (88)
134 4etp_A Kinesin-like protein KA 84.4 1.7 6E-05 43.5 7.0 48 302-349 16-63 (403)
135 2eqb_B RAB guanine nucleotide 84.3 16 0.00055 30.1 12.3 47 304-350 13-59 (97)
136 3htk_A Structural maintenance 84.2 6.1 0.00021 28.8 8.2 48 304-351 6-53 (60)
137 3jsv_C NF-kappa-B essential mo 84.2 8.3 0.00028 31.7 9.6 51 288-338 8-61 (94)
138 2ve7_C Kinetochore protein NUF 84.0 0.54 1.8E-05 44.5 2.9 43 310-352 141-183 (250)
139 1g6u_A Domain swapped dimer; d 83.9 3.8 0.00013 29.0 6.4 26 325-350 21-46 (48)
140 1jcd_A Major outer membrane li 83.8 5 0.00017 29.5 7.4 41 310-350 4-44 (52)
141 3bas_A Myosin heavy chain, str 83.7 15 0.00051 29.3 12.6 55 300-354 32-86 (89)
142 1a93_B MAX protein, coiled coi 83.7 1.6 5.4E-05 29.7 4.2 26 317-342 7-32 (34)
143 2ve7_A Kinetochore protein HEC 83.7 2.2 7.6E-05 41.4 7.2 44 309-352 184-227 (315)
144 2v71_A Nuclear distribution pr 83.6 20 0.00068 32.8 13.0 32 314-345 92-123 (189)
145 2xzr_A Immunoglobulin-binding 83.5 15 0.00052 30.5 11.0 12 285-296 34-45 (114)
146 2xv5_A Lamin-A/C; structural p 82.9 6.7 0.00023 30.7 8.3 49 299-347 8-56 (74)
147 1fmh_B General control protein 82.7 2.1 7.2E-05 28.2 4.4 29 305-333 3-31 (33)
148 2wuj_A Septum site-determining 82.7 1.2 4E-05 33.1 3.7 29 303-331 27-55 (57)
149 3q8t_A Beclin-1; autophagy, AT 82.5 18 0.00062 29.3 12.3 31 307-337 22-52 (96)
150 3cve_A Homer protein homolog 1 82.3 9.2 0.00031 29.9 8.8 43 307-349 25-67 (72)
151 3qne_A Seryl-tRNA synthetase, 82.3 10 0.00035 39.2 11.8 54 297-350 41-104 (485)
152 3lay_A Zinc resistance-associa 82.2 11 0.00037 33.9 10.6 26 324-349 113-138 (175)
153 2v4h_A NF-kappa-B essential mo 82.0 17 0.00058 30.6 10.9 48 303-350 62-109 (110)
154 1wle_A Seryl-tRNA synthetase; 81.9 8.3 0.00028 39.9 11.0 28 322-349 121-148 (501)
155 3ra3_B P2F; coiled coil domain 81.5 1.2 4E-05 28.4 2.8 16 315-330 5-20 (28)
156 1ses_A Seryl-tRNA synthetase; 81.3 15 0.00053 36.8 12.5 52 299-350 38-97 (421)
157 1am9_A Srebp-1A, protein (ster 81.1 2.2 7.5E-05 33.6 5.0 28 303-330 50-77 (82)
158 3qh9_A Liprin-beta-2; coiled-c 81.0 7.4 0.00025 31.2 7.9 45 303-347 26-77 (81)
159 2fxo_A Myosin heavy chain, car 81.0 14 0.00047 31.2 10.3 16 334-349 107-122 (129)
160 2oxj_A Hybrid alpha/beta pepti 80.9 3.1 0.00011 28.2 4.8 27 321-347 5-31 (34)
161 1p9i_A Cortexillin I/GCN4 hybr 80.8 1.8 6E-05 28.2 3.5 25 329-353 4-28 (31)
162 3cvf_A Homer-3, homer protein 80.6 11 0.00037 30.0 8.8 46 305-350 29-74 (79)
163 1kd8_B GABH BLL, GCN4 acid bas 79.9 3.9 0.00013 28.0 5.1 28 321-348 5-32 (36)
164 3s4r_A Vimentin; alpha-helix, 79.8 20 0.00067 28.9 10.4 42 311-352 24-70 (93)
165 1nlw_A MAD protein, MAX dimeri 79.8 4.1 0.00014 32.1 6.2 33 303-335 47-79 (80)
166 1wle_A Seryl-tRNA synthetase; 79.6 13 0.00046 38.3 11.6 59 300-358 81-150 (501)
167 4dzn_A Coiled-coil peptide CC- 79.5 4.6 0.00016 26.6 5.2 23 307-329 6-28 (33)
168 4emc_A Monopolin complex subun 79.1 5.7 0.00019 36.4 7.6 39 309-347 19-57 (190)
169 1joc_A EEA1, early endosomal a 79.1 17 0.00058 30.6 10.2 33 304-336 19-51 (125)
170 3i00_A HIP-I, huntingtin-inter 78.8 13 0.00045 31.5 9.4 46 306-351 36-81 (120)
171 3w03_C DNA repair protein XRCC 78.6 5.4 0.00019 36.4 7.4 30 303-332 145-174 (184)
172 3u06_A Protein claret segregat 78.5 4.2 0.00014 41.0 7.3 47 303-349 17-63 (412)
173 3swf_A CGMP-gated cation chann 78.4 8.1 0.00028 30.4 7.3 30 306-335 3-32 (74)
174 2xv5_A Lamin-A/C; structural p 78.2 12 0.0004 29.3 8.2 49 303-351 5-53 (74)
175 1deq_A Fibrinogen (alpha chain 78.2 9.3 0.00032 38.5 9.5 17 277-293 61-77 (390)
176 2dq0_A Seryl-tRNA synthetase; 78.1 7.9 0.00027 39.4 9.3 51 300-350 42-102 (455)
177 1zxa_A CGMP-dependent protein 78.0 3 0.0001 32.3 4.7 32 300-331 22-53 (67)
178 1gmj_A ATPase inhibitor; coile 77.5 16 0.00055 29.4 9.0 59 271-331 19-79 (84)
179 3viq_B Mating-type switching p 77.4 13 0.00044 30.0 8.4 56 303-358 8-68 (85)
180 1go4_E MAD1 (mitotic arrest de 77.4 4.4 0.00015 33.7 5.8 30 304-333 13-42 (100)
181 3m48_A General control protein 77.4 2.6 8.9E-05 28.4 3.6 26 321-346 4-29 (33)
182 2ocy_A RAB guanine nucleotide 77.2 24 0.00081 31.3 10.9 22 331-352 108-129 (154)
183 3lss_A Seryl-tRNA synthetase; 77.1 28 0.00095 35.9 13.0 26 297-322 45-70 (484)
184 3tnu_A Keratin, type I cytoske 77.0 19 0.00067 30.3 10.1 21 332-352 85-105 (131)
185 3a2a_A Voltage-gated hydrogen 77.0 6.8 0.00023 29.3 6.1 29 303-331 18-46 (58)
186 3qh9_A Liprin-beta-2; coiled-c 76.3 16 0.00056 29.2 8.6 46 306-351 22-67 (81)
187 4e61_A Protein BIM1; EB1-like 76.3 10 0.00035 31.7 7.8 42 308-349 9-50 (106)
188 3u59_A Tropomyosin beta chain; 76.2 29 0.001 28.0 13.0 35 304-338 31-65 (101)
189 1uix_A RHO-associated kinase; 75.9 13 0.00045 29.0 7.8 45 308-352 2-49 (71)
190 3swy_A Cyclic nucleotide-gated 75.8 14 0.00046 26.6 7.3 41 307-350 2-42 (46)
191 1ik9_A DNA repair protein XRCC 75.6 7.1 0.00024 36.1 7.4 24 305-328 141-164 (213)
192 1kd8_A GABH AIV, GCN4 acid bas 75.5 6.3 0.00022 27.0 5.1 28 321-348 5-32 (36)
193 1fmh_A General control protein 75.4 3.9 0.00013 26.9 4.0 28 326-353 3-30 (33)
194 3w03_C DNA repair protein XRCC 75.3 6.4 0.00022 35.9 6.9 36 312-347 147-182 (184)
195 3mq9_A Bone marrow stromal ant 75.1 28 0.00095 34.4 12.1 27 324-350 443-469 (471)
196 1gk4_A Vimentin; intermediate 75.0 17 0.00057 28.6 8.5 49 300-348 23-71 (84)
197 3c3g_A Alpha/beta peptide with 74.9 6 0.00021 26.6 4.8 27 321-347 4-30 (33)
198 1x8y_A Lamin A/C; structural p 74.6 20 0.00069 28.3 8.9 46 302-347 27-72 (86)
199 3bbp_D GRIP and coiled-coil do 74.5 2.6 9E-05 32.9 3.5 46 306-351 18-63 (71)
200 2oto_A M protein; helical coil 74.4 15 0.0005 31.8 8.8 32 305-336 52-83 (155)
201 1gk6_A Vimentin; intermediate 74.1 8.5 0.00029 28.6 6.2 41 307-347 4-44 (59)
202 1wlq_A Geminin; coiled-coil; 2 74.0 16 0.00053 29.4 8.0 24 306-329 41-64 (83)
203 3qne_A Seryl-tRNA synthetase, 74.0 18 0.00061 37.4 10.6 22 307-328 44-65 (485)
204 3vkg_A Dynein heavy chain, cyt 73.9 19 0.00065 45.2 12.4 31 318-348 2036-2066(3245)
205 1s1c_X RHO-associated, coiled- 73.6 17 0.0006 28.3 8.0 45 307-351 3-48 (71)
206 2b5u_A Colicin E3; high resolu 73.5 23 0.0008 36.9 11.2 27 306-332 317-343 (551)
207 2zqm_A Prefoldin beta subunit 73.5 34 0.0012 27.5 12.2 39 314-352 74-112 (117)
208 2zvf_A Alanyl-tRNA synthetase; 73.1 3.9 0.00013 35.3 4.8 28 307-334 29-56 (171)
209 3c3f_A Alpha/beta peptide with 73.0 7.1 0.00024 26.4 4.8 27 321-347 5-31 (34)
210 1dip_A Delta-sleep-inducing pe 72.8 2.2 7.4E-05 33.8 2.7 25 305-329 17-41 (78)
211 1gk6_A Vimentin; intermediate 72.7 22 0.00074 26.3 8.1 47 302-348 6-52 (59)
212 3he4_A Synzip6; heterodimeric 72.5 4.3 0.00015 29.5 4.0 37 303-339 17-53 (56)
213 3hhm_B NISH2 P85alpha; PI3KCA, 72.4 13 0.00044 37.0 8.9 53 300-352 202-254 (373)
214 4dk0_A Putative MACA; alpha-ha 71.9 25 0.00086 33.2 10.6 27 324-350 122-148 (369)
215 1fxk_C Protein (prefoldin); ar 71.2 16 0.00056 30.3 8.1 33 307-339 92-124 (133)
216 3mud_A DNA repair protein XRCC 71.2 13 0.00046 33.6 7.9 39 303-341 128-166 (175)
217 4ati_A MITF, microphthalmia-as 71.2 3.1 0.00011 35.0 3.5 68 284-351 25-111 (118)
218 4b4t_K 26S protease regulatory 71.0 7 0.00024 39.5 6.7 43 303-345 49-91 (428)
219 2wvr_A Geminin; DNA replicatio 71.0 18 0.00063 33.4 8.8 49 303-355 115-163 (209)
220 2zqm_A Prefoldin beta subunit 70.8 14 0.00049 29.7 7.4 39 319-357 72-110 (117)
221 2fxo_A Myosin heavy chain, car 70.5 47 0.0016 27.9 13.0 43 306-348 65-107 (129)
222 2dq0_A Seryl-tRNA synthetase; 70.1 20 0.00069 36.4 9.9 22 307-328 42-63 (455)
223 1ses_A Seryl-tRNA synthetase; 70.1 34 0.0012 34.3 11.5 15 310-324 42-56 (421)
224 1uo4_A General control protein 70.0 5.4 0.00019 27.0 3.8 26 321-346 5-30 (34)
225 4g2k_A General control protein 70.0 21 0.00073 30.5 8.4 17 362-378 89-107 (125)
226 2wq1_A General control protein 69.8 9.4 0.00032 25.7 4.8 27 321-347 4-30 (33)
227 1fzc_C Fibrin; blood coagulati 69.7 2.2 7.7E-05 41.8 2.7 47 303-349 4-50 (319)
228 1hlo_A Protein (transcription 69.7 9.4 0.00032 29.6 5.8 14 302-315 28-41 (80)
229 1zme_C Proline utilization tra 69.0 4.1 0.00014 30.0 3.4 24 303-326 44-67 (70)
230 1m1j_A Fibrinogen alpha subuni 68.9 55 0.0019 33.8 12.6 47 303-349 111-157 (491)
231 2bni_A General control protein 68.5 7.1 0.00024 26.5 4.1 27 321-347 5-31 (34)
232 1gk7_A Vimentin; intermediate 68.1 9.8 0.00034 26.3 4.9 22 327-348 16-37 (39)
233 2hy6_A General control protein 68.0 10 0.00036 25.6 4.8 27 321-347 5-31 (34)
234 2fic_A Bridging integrator 1; 67.9 21 0.00071 32.4 8.7 56 294-352 149-211 (251)
235 3vmx_A Voltage-gated hydrogen 67.8 26 0.00089 25.4 7.2 30 302-331 10-39 (48)
236 2lz1_A Nuclear factor erythroi 67.5 0.093 3.2E-06 42.9 -6.3 25 279-303 63-87 (90)
237 3he5_A Synzip1; heterodimeric 67.4 26 0.00088 24.8 7.0 37 312-348 5-41 (49)
238 1m1j_C Fibrinogen gamma chain; 67.4 3.3 0.00011 42.0 3.4 45 308-352 89-133 (409)
239 3q0x_A Centriole protein; cent 67.2 20 0.0007 33.5 8.5 42 303-344 178-219 (228)
240 1m1j_B Fibrinogen beta chain; 67.1 64 0.0022 33.2 12.9 15 280-294 104-118 (464)
241 2z5i_A TM, general control pro 67.1 17 0.0006 26.4 6.4 36 307-349 9-44 (52)
242 3oa7_A Head morphogenesis prot 67.1 17 0.00058 33.6 7.7 47 312-358 32-78 (206)
243 1gk4_A Vimentin; intermediate 67.0 44 0.0015 26.2 11.8 41 304-344 34-74 (84)
244 1ik9_A DNA repair protein XRCC 67.0 23 0.00079 32.6 8.8 15 313-327 142-156 (213)
245 3sja_C Golgi to ER traffic pro 66.6 12 0.00042 28.7 5.7 23 327-349 35-57 (65)
246 2k48_A Nucleoprotein; viral pr 66.3 38 0.0013 28.3 9.0 16 335-350 86-101 (107)
247 2lf0_A Uncharacterized protein 66.2 10 0.00036 32.4 5.7 23 327-349 39-61 (123)
248 3tnu_A Keratin, type I cytoske 66.0 59 0.002 27.3 11.8 33 306-338 80-112 (131)
249 2dq3_A Seryl-tRNA synthetase; 65.6 11 0.00038 37.8 6.9 51 300-350 41-101 (425)
250 3he4_A Synzip6; heterodimeric 65.6 2.7 9.2E-05 30.6 1.7 48 305-352 5-52 (56)
251 2yko_A LINE-1 ORF1P; RNA-bindi 65.3 12 0.00039 35.4 6.4 48 306-353 2-49 (233)
252 3uux_B Mitochondrial division 65.1 23 0.00077 33.6 8.4 51 302-352 176-226 (242)
253 3plt_A Sphingolipid long chain 65.1 62 0.0021 30.4 11.4 84 272-357 83-176 (234)
254 2w83_C C-JUN-amino-terminal ki 64.9 45 0.0015 26.4 8.7 46 307-352 6-58 (77)
255 3q0x_A Centriole protein; cent 64.9 29 0.00099 32.5 9.1 45 306-350 174-218 (228)
256 4gkw_A Spindle assembly abnorm 64.8 40 0.0014 29.5 9.2 40 312-351 114-160 (167)
257 3mov_A Lamin-B1; LMNB1, B-type 64.8 51 0.0017 26.7 9.4 45 303-347 37-81 (95)
258 2b5u_A Colicin E3; high resolu 64.7 51 0.0017 34.4 11.5 26 292-317 317-342 (551)
259 3vkg_A Dynein heavy chain, cyt 64.7 27 0.00093 43.8 11.1 33 309-341 2034-2066(3245)
260 3tnu_B Keratin, type II cytosk 64.2 63 0.0022 27.0 11.8 22 312-333 84-105 (129)
261 3a5t_A Transcription factor MA 64.1 0.88 3E-05 38.2 -1.3 33 318-350 59-91 (107)
262 1m1j_C Fibrinogen gamma chain; 63.8 16 0.00055 36.9 7.6 43 304-346 92-134 (409)
263 2wuj_A Septum site-determining 63.7 7 0.00024 28.8 3.8 22 329-350 32-53 (57)
264 3ljm_A Coil Ser L9C; de novo d 63.7 9.9 0.00034 24.7 3.9 22 306-327 4-25 (31)
265 1uii_A Geminin; human, DNA rep 63.4 35 0.0012 27.4 7.9 29 303-331 46-74 (83)
266 1deq_A Fibrinogen (alpha chain 63.2 18 0.00062 36.4 7.7 40 303-342 113-152 (390)
267 2w6b_A RHO guanine nucleotide 63.2 32 0.0011 25.7 7.1 24 307-330 14-37 (56)
268 3fpp_A Macrolide-specific effl 63.1 46 0.0016 31.1 10.3 25 326-350 116-140 (341)
269 2oto_A M protein; helical coil 62.9 31 0.001 29.8 8.4 20 307-326 61-80 (155)
270 1x8y_A Lamin A/C; structural p 62.9 48 0.0016 26.1 8.8 49 300-348 32-80 (86)
271 2zxx_A Geminin; coiled-coil, c 62.8 40 0.0014 26.8 8.2 39 308-350 39-77 (79)
272 3ol1_A Vimentin; structural ge 62.1 68 0.0023 26.7 12.6 38 313-350 65-102 (119)
273 3k66_A Beta-amyloid-like prote 61.8 72 0.0025 30.2 11.1 57 302-358 37-98 (239)
274 3jsv_C NF-kappa-B essential mo 61.8 46 0.0016 27.2 8.6 46 303-348 40-85 (94)
275 4ani_A Protein GRPE; chaperone 61.8 21 0.00071 33.1 7.4 31 306-336 62-92 (213)
276 4b4t_M 26S protease regulatory 61.7 7.2 0.00025 39.5 4.7 41 309-349 31-71 (434)
277 4dci_A Uncharacterized protein 61.5 44 0.0015 29.4 9.1 14 372-385 117-130 (150)
278 3trt_A Vimentin; cytoskeleton, 61.4 50 0.0017 25.0 9.0 42 309-350 34-75 (77)
279 2no2_A HIP-I, huntingtin-inter 61.2 69 0.0024 26.4 12.6 45 311-355 55-99 (107)
280 2l5g_B Putative uncharacterize 61.0 19 0.00065 25.5 5.3 31 321-351 6-36 (42)
281 3swk_A Vimentin; cytoskeleton, 60.8 13 0.00046 29.5 5.2 39 312-350 44-82 (86)
282 3sjb_C Golgi to ER traffic pro 60.7 24 0.00081 28.9 6.7 22 328-349 53-74 (93)
283 2ke4_A CDC42-interacting prote 60.6 58 0.002 26.6 9.1 31 322-352 60-90 (98)
284 1fxk_A Prefoldin; archaeal pro 59.8 22 0.00074 28.2 6.4 37 314-350 69-105 (107)
285 2z5i_A TM, general control pro 59.6 16 0.00055 26.6 5.0 35 292-326 8-42 (52)
286 4ath_A MITF, microphthalmia-as 59.5 19 0.00066 28.8 5.9 25 306-330 52-76 (83)
287 3swk_A Vimentin; cytoskeleton, 59.4 64 0.0022 25.5 10.0 22 307-328 4-25 (86)
288 1f5n_A Interferon-induced guan 59.1 97 0.0033 32.5 12.8 6 60-65 77-82 (592)
289 3ol1_A Vimentin; structural ge 59.0 77 0.0026 26.3 12.9 12 277-288 18-29 (119)
290 1l8d_A DNA double-strand break 58.9 68 0.0023 25.6 11.9 28 324-351 71-98 (112)
291 2no2_A HIP-I, huntingtin-inter 58.7 76 0.0026 26.2 12.2 51 300-350 51-101 (107)
292 3lss_A Seryl-tRNA synthetase; 58.6 61 0.0021 33.4 10.9 28 323-350 109-137 (484)
293 2q6q_A Spindle POLE BODY compo 58.6 63 0.0022 25.2 9.4 45 300-351 14-58 (74)
294 2r2v_A GCN4 leucine zipper; co 58.5 21 0.00073 24.1 5.0 27 321-347 5-31 (34)
295 1fxk_C Protein (prefoldin); ar 58.4 34 0.0012 28.4 7.6 34 305-338 97-130 (133)
296 3sjb_C Golgi to ER traffic pro 58.3 44 0.0015 27.3 7.8 23 322-344 54-76 (93)
297 3mtu_A Tropomyosin alpha-1 cha 58.1 18 0.00062 28.1 5.4 46 304-349 17-62 (75)
298 2aze_A Transcription factor DP 58.0 34 0.0012 30.4 7.7 8 301-308 24-31 (155)
299 2oa5_A Hypothetical protein BQ 57.7 5.6 0.00019 33.6 2.5 24 326-349 10-33 (110)
300 2xnx_M M protein, M1-BC1; cell 57.6 76 0.0026 27.9 9.8 31 320-350 69-99 (146)
301 3ni0_A Bone marrow stromal ant 57.5 80 0.0027 26.0 10.8 55 299-353 35-89 (99)
302 2e7s_A RAB guanine nucleotide 57.4 16 0.00055 31.8 5.5 10 315-324 44-53 (135)
303 2zdi_C Prefoldin subunit alpha 57.3 20 0.00069 30.6 6.2 40 306-345 101-140 (151)
304 2ic6_A Nucleocapsid protein; h 57.3 65 0.0022 25.5 8.5 52 304-355 6-69 (78)
305 3lay_A Zinc resistance-associa 57.0 37 0.0013 30.4 8.0 18 332-349 114-131 (175)
306 4a3a_A Amphiphysin; structural 56.9 43 0.0015 31.0 8.8 52 298-352 139-197 (243)
307 2xu6_A MDV1 coiled coil; prote 56.8 27 0.00094 27.3 6.1 48 303-350 21-68 (72)
308 1ykh_B RNA polymerase II holoe 56.8 22 0.00075 30.4 6.2 30 322-351 97-126 (132)
309 1yke_B RNA polymerase II holoe 56.6 21 0.00072 31.3 6.2 38 320-357 95-132 (151)
310 3tq2_A KE1; parallel three hel 56.6 28 0.00096 23.2 5.3 30 321-350 5-34 (36)
311 2j5u_A MREC protein; bacterial 56.6 5.7 0.00019 37.3 2.7 6 332-337 51-56 (255)
312 3swf_A CGMP-gated cation chann 56.4 54 0.0018 25.8 7.8 28 303-330 7-34 (74)
313 4e61_A Protein BIM1; EB1-like 56.2 61 0.0021 27.0 8.6 30 303-332 11-40 (106)
314 2odv_A Plectin 1, HD1; plakin 56.0 1.2E+02 0.0039 28.1 11.5 37 278-314 99-135 (235)
315 1hs7_A Syntaxin VAM3; UP-and-D 55.9 22 0.00075 29.2 5.8 49 306-354 36-87 (97)
316 2aze_A Transcription factor DP 55.8 13 0.00044 33.1 4.7 23 315-337 10-32 (155)
317 3thf_A Protein shroom; coiled- 55.7 34 0.0012 31.3 7.6 31 298-328 14-44 (190)
318 1fxk_A Prefoldin; archaeal pro 55.6 73 0.0025 25.0 11.7 35 320-354 68-102 (107)
319 2wg5_A General control protein 55.1 10 0.00035 31.3 3.7 23 329-351 12-34 (109)
320 2er8_A Regulatory protein Leu3 55.0 6.4 0.00022 29.2 2.3 22 302-323 48-69 (72)
321 2akf_A Coronin-1A; coiled coil 54.5 30 0.001 22.8 5.0 24 308-331 4-27 (32)
322 4fi5_A Nucleoprotein; structur 54.5 64 0.0022 27.2 8.5 16 335-350 73-88 (113)
323 3ra3_A P1C; coiled coil domain 54.3 6.4 0.00022 25.0 1.7 19 311-329 8-26 (28)
324 2ic9_A Nucleocapsid protein; h 53.7 72 0.0025 26.2 8.5 16 336-351 57-72 (96)
325 2b9c_A Striated-muscle alpha t 53.6 1.1E+02 0.0038 26.5 11.7 71 280-350 35-120 (147)
326 3etw_A Adhesin A; antiparallel 53.1 1E+02 0.0036 26.1 10.2 28 289-316 34-61 (119)
327 2l5g_B Putative uncharacterize 52.4 30 0.001 24.4 5.2 33 306-338 5-37 (42)
328 3ljm_A Coil Ser L9C; de novo d 52.4 25 0.00085 22.8 4.3 23 328-350 5-27 (31)
329 1ytz_T Troponin T; muscle, THI 52.3 1E+02 0.0034 25.6 11.2 37 314-350 46-89 (107)
330 4ath_A MITF, microphthalmia-as 52.1 27 0.00092 28.0 5.5 39 302-351 38-76 (83)
331 1hlo_A Protein (transcription 51.6 12 0.00042 28.9 3.4 19 326-344 59-77 (80)
332 1l8d_A DNA double-strand break 51.4 91 0.0031 24.8 10.9 37 312-348 66-102 (112)
333 3v86_A De novo design helix; c 51.4 17 0.00059 22.9 3.4 20 308-327 5-24 (27)
334 3e98_A GAF domain of unknown f 51.0 36 0.0012 31.8 7.2 29 304-332 80-111 (252)
335 1lq7_A Alpha3W; three helix bu 50.7 51 0.0017 24.6 6.5 13 336-348 53-65 (67)
336 2dq3_A Seryl-tRNA synthetase; 50.2 20 0.00067 36.0 5.6 23 333-355 77-99 (425)
337 2yo3_A General control protein 50.2 43 0.0015 32.2 7.6 53 298-350 211-263 (268)
338 1cii_A Colicin IA; bacteriocin 50.0 2.1E+02 0.007 29.9 12.9 48 300-347 360-407 (602)
339 2lq4_p Lysophosphatidic acid r 49.8 3.1 0.00011 32.1 -0.2 29 320-348 51-79 (80)
340 2lw1_A ABC transporter ATP-bin 49.7 47 0.0016 26.1 6.7 48 303-350 29-82 (89)
341 2ve7_A Kinetochore protein HEC 49.6 25 0.00087 33.9 6.1 31 302-332 184-214 (315)
342 4b4t_J 26S protease regulatory 49.6 17 0.0006 36.5 5.1 41 303-350 25-65 (405)
343 1fzc_C Fibrin; blood coagulati 49.3 9.7 0.00033 37.3 3.1 41 312-352 6-46 (319)
344 3iox_A AGI/II, PA; alpha helix 49.1 58 0.002 33.8 8.9 29 305-333 36-64 (497)
345 2pih_A Protein YMCA; regulate 49.0 1.3E+02 0.0044 25.8 11.2 17 364-380 129-145 (151)
346 3viq_B Mating-type switching p 49.0 95 0.0032 24.9 8.3 26 306-331 4-29 (85)
347 2j69_A Bacterial dynamin-like 48.8 58 0.002 34.5 9.2 44 308-351 350-393 (695)
348 4b4t_L 26S protease subunit RP 48.7 17 0.00059 36.8 4.9 16 335-350 83-98 (437)
349 3gp4_A Transcriptional regulat 48.4 1.1E+02 0.0039 25.7 9.4 34 312-345 83-116 (142)
350 3l4q_C Phosphatidylinositol 3- 48.4 62 0.0021 29.0 8.0 41 308-348 115-155 (170)
351 3vp9_A General transcriptional 47.9 72 0.0025 26.0 7.6 44 307-350 40-87 (92)
352 1j1d_B Troponin T, TNT; THIN f 47.7 1.2E+02 0.0041 25.1 9.5 37 314-350 46-89 (106)
353 3rrk_A V-type ATPase 116 kDa s 47.6 37 0.0013 32.4 6.9 28 319-346 101-128 (357)
354 2qyw_A Vesicle transport throu 47.6 1.1E+02 0.0038 24.7 10.1 79 272-350 15-97 (102)
355 2zvf_A Alanyl-tRNA synthetase; 47.5 12 0.0004 32.2 3.1 32 320-351 28-59 (171)
356 4dk0_A Putative MACA; alpha-ha 47.4 41 0.0014 31.7 7.2 33 316-348 121-153 (369)
357 2xus_A Breast cancer metastasi 47.4 57 0.0019 23.7 6.1 24 299-326 6-29 (49)
358 2i1j_A Moesin; FERM, coiled-co 47.3 15 0.0005 38.5 4.2 26 305-330 337-362 (575)
359 1zxa_A CGMP-dependent protein 46.6 28 0.00095 26.8 4.7 21 309-329 24-44 (67)
360 1m1j_B Fibrinogen beta chain; 46.3 1.3E+02 0.0044 30.9 11.0 16 337-352 174-189 (464)
361 3iox_A AGI/II, PA; alpha helix 46.3 1.7E+02 0.006 30.3 11.9 15 308-322 46-60 (497)
362 3mud_A DNA repair protein XRCC 46.0 86 0.0029 28.3 8.5 36 304-339 136-171 (175)
363 3ghg_C Fibrinogen gamma chain; 46.0 20 0.0007 36.3 4.9 38 316-353 97-134 (411)
364 1lrz_A FEMA, factor essential 45.9 59 0.002 32.0 8.2 23 303-325 247-269 (426)
365 3q4f_C DNA repair protein XRCC 45.8 36 0.0012 31.0 6.0 29 304-332 155-183 (186)
366 1lwu_B Fibrinogen beta chain; 45.7 29 0.001 33.9 5.9 14 327-340 38-51 (323)
367 2wg5_A General control protein 45.4 15 0.0005 30.3 3.2 20 312-331 9-28 (109)
368 3rrk_A V-type ATPase 116 kDa s 45.4 70 0.0024 30.5 8.5 30 303-332 226-255 (357)
369 3a7o_A Autophagy protein 16; c 45.1 59 0.002 25.4 6.3 41 303-343 32-72 (75)
370 3gp4_A Transcriptional regulat 45.1 1.4E+02 0.0048 25.2 10.5 30 307-336 85-114 (142)
371 4b4t_L 26S protease subunit RP 45.0 21 0.00072 36.1 4.9 27 318-344 73-99 (437)
372 3he4_B Synzip5; heterodimeric 45.0 65 0.0022 22.5 5.9 16 307-322 7-22 (46)
373 3swy_A Cyclic nucleotide-gated 44.9 83 0.0028 22.5 6.7 23 305-327 7-29 (46)
374 3l4f_A RHO guanine nucleotide 44.8 88 0.003 23.7 7.1 38 313-350 10-47 (61)
375 3pik_A Cation efflux system pr 43.9 2E+02 0.0068 27.1 11.4 25 303-327 351-375 (446)
376 2p22_A Suppressor protein STP2 43.7 43 0.0015 30.1 6.2 34 312-345 51-84 (174)
377 2gkw_A TNF receptor-associated 43.6 36 0.0012 30.0 5.7 33 306-338 3-35 (192)
378 3bas_A Myosin heavy chain, str 43.6 1.2E+02 0.0041 23.9 11.2 42 306-347 45-86 (89)
379 3fx0_A NF-kappa-B essential mo 43.6 14 0.00047 30.5 2.6 40 299-338 34-76 (96)
380 2q6q_A Spindle POLE BODY compo 43.3 1.2E+02 0.0039 23.7 8.6 47 306-352 6-52 (74)
381 2ocy_A RAB guanine nucleotide 43.1 1.7E+02 0.006 25.7 12.1 31 320-350 111-141 (154)
382 1t3j_A Mitofusin 1; coiled coi 43.0 85 0.0029 25.7 7.3 42 306-351 50-91 (96)
383 2akf_A Coronin-1A; coiled coil 42.9 32 0.0011 22.6 3.8 24 314-337 3-26 (32)
384 3onj_A T-snare VTI1; helix, HA 42.7 1.2E+02 0.0041 24.2 8.2 20 331-350 72-92 (97)
385 3q4f_C DNA repair protein XRCC 42.4 39 0.0013 30.8 5.7 27 300-326 158-184 (186)
386 4dzo_A Mitotic spindle assembl 42.3 46 0.0016 28.2 5.9 25 303-327 4-28 (123)
387 1fmh_B General control protein 42.2 38 0.0013 22.2 4.0 27 326-352 3-29 (33)
388 2xz3_A Maltose ABC transporter 42.0 77 0.0026 31.1 8.4 17 360-376 422-440 (463)
389 3iyn_Q Protein IX, PIX, hexon- 42.0 16 0.00055 31.6 2.9 25 306-330 101-125 (140)
390 3vlc_E Golgi to ER traffic pro 41.9 22 0.00074 29.2 3.6 23 327-349 59-81 (94)
391 1j1d_C Troponin I, TNI; THIN f 41.9 67 0.0023 27.7 6.9 42 313-354 61-109 (133)
392 1a93_A Coiled coil, LZ, MYC pr 41.9 46 0.0016 22.5 4.6 26 324-349 7-32 (34)
393 1vcs_A Vesicle transport throu 41.7 98 0.0034 24.9 7.6 51 300-350 35-93 (102)
394 3ni0_A Bone marrow stromal ant 41.6 81 0.0028 26.0 6.9 16 340-355 69-84 (99)
395 1f5n_A Interferon-induced guan 41.3 2.6E+02 0.0088 29.3 12.6 17 308-324 517-533 (592)
396 3sja_C Golgi to ER traffic pro 41.0 98 0.0033 23.7 6.9 22 332-353 33-54 (65)
397 3duz_A GP67, major envelope gl 40.8 69 0.0024 32.7 7.7 63 301-363 275-337 (487)
398 2a3d_A Protein (de novo three- 40.6 16 0.00054 27.8 2.4 59 289-350 8-70 (73)
399 2efr_A General control protein 40.4 1.9E+02 0.0065 25.4 11.8 16 306-321 73-88 (155)
400 2pnv_A Small conductance calci 40.2 36 0.0012 24.1 4.0 8 340-347 32-39 (43)
401 1x79_B RAB GTPase binding effe 40.1 1.7E+02 0.0057 24.6 11.3 45 308-352 36-80 (112)
402 3m0d_C TNF receptor-associated 40.0 1.1E+02 0.0039 22.7 9.1 37 303-339 6-42 (65)
403 3okq_A BUD site selection prot 40.0 1.9E+02 0.0065 25.2 10.9 59 290-348 8-78 (141)
404 4b4t_J 26S protease regulatory 39.9 41 0.0014 33.8 6.0 25 309-333 38-62 (405)
405 2yko_A LINE-1 ORF1P; RNA-bindi 39.9 54 0.0018 30.9 6.4 44 305-348 8-51 (233)
406 3tq7_B Microtubule-associated 39.9 54 0.0019 26.1 5.6 45 304-348 9-53 (82)
407 4fm3_A Uncharacterized hypothe 39.7 92 0.0032 25.6 7.1 38 302-339 56-93 (98)
408 3kin_B Kinesin heavy chain; mo 39.4 43 0.0015 27.9 5.2 11 306-316 99-109 (117)
409 2aze_B Transcription factor E2 39.3 68 0.0023 26.4 6.3 31 307-337 10-40 (106)
410 2fic_A Bridging integrator 1; 39.0 1.5E+02 0.0051 26.6 9.2 24 307-330 187-210 (251)
411 3aon_A V-type sodium ATPase su 39.0 1.3E+02 0.0045 27.4 8.9 50 304-353 32-81 (217)
412 1ytz_T Troponin T; muscle, THI 38.5 83 0.0028 26.1 6.7 29 321-349 46-74 (107)
413 2rft_B Influenza B hemagglutin 37.9 81 0.0028 28.2 6.9 75 305-384 77-157 (176)
414 4aj5_K Spindle and kinetochore 37.8 1.4E+02 0.0049 25.5 8.1 48 305-352 52-99 (123)
415 1d7m_A Cortexillin I; coiled-c 37.4 1.7E+02 0.0058 23.9 8.9 39 296-334 18-56 (101)
416 2xzr_A Immunoglobulin-binding 37.3 1.7E+02 0.0057 24.3 8.2 46 303-348 62-107 (114)
417 3vlc_E Golgi to ER traffic pro 37.3 26 0.00088 28.8 3.3 20 333-352 58-77 (94)
418 3hd7_B Syntaxin-1A; membrane p 37.1 55 0.0019 26.7 5.5 51 303-353 21-71 (109)
419 2zdi_C Prefoldin subunit alpha 37.1 89 0.0031 26.5 7.0 33 305-337 107-139 (151)
420 3ibp_A Chromosome partition pr 36.9 1.7E+02 0.0057 28.6 9.5 17 305-321 226-242 (302)
421 3mtu_E Head morphogenesis prot 36.7 1.2E+02 0.0042 23.9 7.1 43 312-354 32-74 (77)
422 1zhc_A Hypothetical protein HP 36.7 69 0.0024 24.7 5.7 42 306-348 27-68 (76)
423 2p22_A Suppressor protein STP2 36.5 91 0.0031 28.0 7.1 35 307-341 53-87 (174)
424 1qvr_A CLPB protein; coiled co 36.4 1.4E+02 0.0048 32.0 9.9 28 292-319 387-417 (854)
425 2w6a_A ARF GTPase-activating p 36.3 1.4E+02 0.0048 22.6 8.3 33 305-337 29-61 (63)
426 3n7n_E Monopolin complex subun 36.3 7.5 0.00026 31.9 0.0 35 313-347 39-73 (95)
427 2p4v_A Transcription elongatio 36.2 2E+02 0.007 24.8 9.3 20 330-349 52-71 (158)
428 2f1m_A Acriflavine resistance 36.2 96 0.0033 28.0 7.5 21 327-347 108-128 (277)
429 1dkg_A Nucleotide exchange fac 36.0 1.2E+02 0.0041 27.4 8.0 15 299-313 63-77 (197)
430 3umh_A Amyloid beta A4 protein 35.9 84 0.0029 29.2 7.0 55 302-358 42-96 (211)
431 2aze_B Transcription factor E2 35.7 60 0.0021 26.7 5.4 20 311-330 7-26 (106)
432 3l4f_A RHO guanine nucleotide 35.6 1.4E+02 0.0049 22.6 7.7 40 307-346 11-50 (61)
433 2ke4_A CDC42-interacting prote 35.4 1.8E+02 0.0061 23.6 8.6 52 303-354 22-85 (98)
434 2js5_A Uncharacterized protein 35.3 1.6E+02 0.0054 22.9 8.0 17 334-350 48-64 (71)
435 4gif_A Polycystic kidney disea 35.2 99 0.0034 22.1 5.7 31 303-333 7-37 (45)
436 1t3j_A Mitofusin 1; coiled coi 35.0 1.3E+02 0.0044 24.6 7.2 11 341-351 74-84 (96)
437 4ati_A MITF, microphthalmia-as 34.6 23 0.00079 29.6 2.8 16 303-318 74-89 (118)
438 1yke_B RNA polymerase II holoe 34.6 84 0.0029 27.4 6.5 38 310-347 92-129 (151)
439 1j1e_C Troponin I, TNI; THIN f 34.6 99 0.0034 28.0 7.1 39 314-352 62-107 (180)
440 1hwt_C Protein (heme activator 34.4 21 0.00073 26.7 2.3 23 300-322 55-77 (81)
441 1j1d_C Troponin I, TNI; THIN f 34.3 95 0.0033 26.8 6.6 43 303-345 65-107 (133)
442 1zhc_A Hypothetical protein HP 34.3 54 0.0018 25.4 4.7 50 303-353 17-66 (76)
443 3tul_A Cell invasion protein S 33.9 69 0.0023 28.4 5.7 56 302-357 75-133 (158)
444 2wrg_I Hemagglutinin HA2 chain 33.9 1E+02 0.0035 28.5 7.1 76 304-384 76-157 (222)
445 3ghg_C Fibrinogen gamma chain; 33.9 1.2E+02 0.0041 30.7 8.3 47 302-348 90-136 (411)
446 1jsd_B Haemagglutinin (HA2 cha 33.8 1.1E+02 0.0037 27.4 7.0 76 304-384 76-157 (176)
447 3k29_A Putative uncharacterize 33.7 2.6E+02 0.009 25.0 12.4 16 281-296 32-47 (169)
448 1uix_A RHO-associated kinase; 33.7 1.7E+02 0.0057 22.8 8.2 18 305-322 13-30 (71)
449 3gwk_C SAG1039, putative uncha 33.3 88 0.003 23.8 5.9 11 309-319 28-38 (98)
450 4g1a_A AQ-C16C19 peptide; heli 33.3 15 0.00051 24.0 1.0 22 307-328 4-25 (32)
451 3azd_A Short alpha-tropomyosin 33.0 12 0.00041 25.5 0.6 15 308-322 9-23 (37)
452 4b4t_M 26S protease regulatory 32.8 34 0.0012 34.6 4.2 31 310-340 39-69 (434)
453 3p7i_A PHND, subunit of alkylp 32.6 42 0.0014 31.7 4.6 51 273-323 261-311 (321)
454 3gpv_A Transcriptional regulat 32.4 67 0.0023 27.3 5.4 10 277-286 56-65 (148)
455 4g2k_A General control protein 32.2 1.6E+02 0.0056 25.1 7.6 6 364-369 98-103 (125)
456 2f1m_A Acriflavine resistance 32.1 93 0.0032 28.1 6.7 34 323-356 97-130 (277)
457 2xnx_M M protein, M1-BC1; cell 32.0 2.6E+02 0.0089 24.5 10.7 41 313-353 69-109 (146)
458 1ykh_B RNA polymerase II holoe 31.7 1.1E+02 0.0038 25.9 6.6 38 308-345 90-127 (132)
459 1gax_A Valrs, valyl-tRNA synth 31.7 73 0.0025 34.9 6.8 29 30-65 398-427 (862)
460 2c5k_T Syntaxin TLG1, T-snare 31.5 46 0.0016 26.9 4.0 80 272-352 6-89 (95)
461 1rtm_1 Mannose-binding protein 31.5 52 0.0018 27.0 4.5 19 305-323 6-24 (149)
462 2l5g_A GPS2 protein, G protein 31.4 54 0.0018 22.6 3.6 18 324-341 15-32 (38)
463 2j69_A Bacterial dynamin-like 31.3 1.6E+02 0.0054 31.1 9.2 47 303-349 352-398 (695)
464 3pjs_K KCSA, voltage-gated pot 31.3 89 0.003 26.8 6.1 21 303-323 138-158 (166)
465 4efa_E V-type proton ATPase su 31.3 2.9E+02 0.0099 24.8 11.2 22 313-334 87-108 (233)
466 4h10_A ARYL hydrocarbon recept 31.2 1E+02 0.0035 23.7 5.8 35 281-315 4-38 (73)
467 3pmr_A Amyloid-like protein 1; 31.1 1.3E+02 0.0046 28.0 7.5 53 303-357 50-102 (219)
468 1ez3_A Syntaxin-1A; three heli 30.9 1.5E+02 0.0053 23.7 7.2 53 302-354 18-73 (127)
469 4ad8_A DNA repair protein RECN 30.8 1.5E+02 0.0052 29.7 8.6 14 138-151 60-73 (517)
470 1a93_A Coiled coil, LZ, MYC pr 30.7 70 0.0024 21.6 4.1 15 313-327 17-31 (34)
471 3azd_A Short alpha-tropomyosin 30.7 14 0.00047 25.2 0.6 29 318-346 5-33 (37)
472 3iyn_Q Protein IX, PIX, hexon- 30.5 78 0.0027 27.3 5.3 29 311-339 99-127 (140)
473 3csx_A Putative uncharacterize 30.5 1.2E+02 0.0041 24.1 6.1 18 277-294 16-33 (81)
474 3etw_A Adhesin A; antiparallel 30.3 2.5E+02 0.0085 23.7 11.2 60 288-349 21-89 (119)
475 3fpp_A Macrolide-specific effl 30.2 3.3E+02 0.011 25.1 10.4 36 319-354 116-151 (341)
476 3m5g_B Hemagglutinin; influenz 30.2 1.1E+02 0.0038 27.5 6.5 80 303-384 75-157 (182)
477 3nr7_A DNA-binding protein H-N 30.1 2.1E+02 0.0071 22.8 7.7 45 305-349 26-70 (86)
478 1lwu_B Fibrinogen beta chain; 30.1 75 0.0026 31.0 6.0 45 294-338 7-56 (323)
479 2i1j_A Moesin; FERM, coiled-co 30.1 71 0.0024 33.3 6.1 71 287-357 302-375 (575)
480 3a5c_G V-type ATP synthase sub 29.9 1.6E+02 0.0055 26.9 7.9 57 302-358 8-64 (223)
481 3ku3_B Hemagglutinin HA2 chain 29.8 1.4E+02 0.0047 26.8 7.0 80 303-384 75-157 (174)
482 3pjs_K KCSA, voltage-gated pot 29.8 58 0.002 28.0 4.6 43 295-337 123-165 (166)
483 1zbt_A RF-1, peptide chain rel 29.8 1.2E+02 0.004 30.4 7.4 70 300-369 50-127 (371)
484 1ek9_A Outer membrane protein 29.7 3.4E+02 0.012 25.2 11.4 68 282-349 297-364 (428)
485 3hhm_B NISH2 P85alpha; PI3KCA, 29.5 1.8E+02 0.0061 28.8 8.6 54 304-357 199-252 (373)
486 3zwh_Q Myosin-9; Ca-binding pr 29.5 21 0.00071 25.6 1.4 25 302-326 5-29 (45)
487 1gk7_A Vimentin; intermediate 29.3 90 0.0031 21.4 4.6 37 300-336 3-39 (39)
488 1nfn_A Apolipoprotein E3; lipi 29.0 3.1E+02 0.01 24.4 9.9 73 292-364 95-176 (191)
489 4dzo_A Mitotic spindle assembl 28.8 1.3E+02 0.0045 25.3 6.6 38 310-347 4-41 (123)
490 1cii_A Colicin IA; bacteriocin 28.8 4.3E+02 0.015 27.5 11.3 70 286-357 341-410 (602)
491 4i0x_B ESAT-6-like protein MAB 28.8 2.1E+02 0.0071 22.3 9.0 56 302-357 17-86 (103)
492 4fla_A Regulation of nuclear P 28.7 2.9E+02 0.0099 24.0 9.2 69 287-355 63-131 (152)
493 3brv_B NF-kappa-B essential mo 28.6 2.1E+02 0.007 22.2 7.5 49 291-339 21-69 (70)
494 2f23_A Anti-cleavage anti-GREA 28.4 2.3E+02 0.0079 24.2 8.3 84 302-385 9-103 (156)
495 1avy_A Fibritin, gpwac M; bact 28.4 1.4E+02 0.0049 23.2 6.0 35 311-345 9-43 (74)
496 3zbh_A ESXA; unknown function, 28.4 1.2E+02 0.0042 22.7 5.9 34 306-339 12-45 (99)
497 3eff_K Voltage-gated potassium 28.3 1.4E+02 0.0047 24.6 6.6 39 278-318 95-133 (139)
498 3brv_B NF-kappa-B essential mo 28.2 2.1E+02 0.0072 22.2 8.8 53 302-354 11-63 (70)
499 3pzp_A DNA polymerase kappa; D 28.1 88 0.003 32.1 6.4 66 303-379 37-105 (517)
500 3u0c_A Invasin IPAB, 62 kDa an 27.9 3.4E+02 0.012 24.5 11.1 68 283-350 72-143 (201)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.51 E-value=1.9e-14 Score=108.28 Aligned_cols=52 Identities=37% Similarity=0.470 Sum_probs=49.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 282 KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
||++|+++||+||++||.||++|+++|+.+|..|+.||..|+.++..|++++
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999999988754
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.46 E-value=3e-13 Score=103.98 Aligned_cols=58 Identities=33% Similarity=0.479 Sum_probs=52.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 281 ~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
+||++|+++||+||++||.||++++++|+.+|+.|+.+|..|+.+|..|++++..|..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999888776665554
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.43 E-value=4.8e-13 Score=101.99 Aligned_cols=57 Identities=32% Similarity=0.471 Sum_probs=52.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 282 KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|++++..|+.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999988776665554
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.38 E-value=6.5e-13 Score=101.65 Aligned_cols=57 Identities=39% Similarity=0.500 Sum_probs=50.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 282 KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
|++||+++||+||++||.||++++++|+.+|+.|+.+|..|..++..|++++..|+.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999888776555443
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.33 E-value=1.8e-12 Score=99.88 Aligned_cols=50 Identities=34% Similarity=0.507 Sum_probs=44.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 284 ~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
++++.+||+||||||.||++++++|+.+|+.|+.+|..|..++..|++++
T Consensus 11 ~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 11 ALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445599999999999999999999999999999999999998887754
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.21 E-value=2.3e-11 Score=93.56 Aligned_cols=57 Identities=28% Similarity=0.467 Sum_probs=45.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 281 ~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
.|+.+++++||.||+|||.||++++++|+.+++.|+.+|..|+.+|..|+.++..|+
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999999988776655443
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.16 E-value=9.8e-11 Score=92.11 Aligned_cols=61 Identities=30% Similarity=0.353 Sum_probs=55.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 284 ~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
.||+.+||+|+|.+|.||++||.+|+.+|..|+.++..|..++..|+.++..|..||..|+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999999999999998888888888887764
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=99.02 E-value=8.6e-10 Score=90.09 Aligned_cols=65 Identities=28% Similarity=0.292 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 280 e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
+.+...|+.+|.+||+|||.++++...+++.+++.|+.||..|+.+|..|+.++..|+.-..+|.
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 33455567789999999999999999999999999999999999999988776655554444333
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.97 E-value=1.9e-09 Score=86.34 Aligned_cols=56 Identities=30% Similarity=0.385 Sum_probs=48.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 282 KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
+...|+.+|.+||+|||.++++...+++.+|..|+.||..|+.+|..|+.++..|+
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445778999999999999999999999999999999999999998877665554
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.80 E-value=1.2e-10 Score=98.39 Aligned_cols=60 Identities=27% Similarity=0.337 Sum_probs=46.9
Q ss_pred cccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (387)
Q Consensus 275 ~~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~ 334 (387)
.++..++|..||+++||++|++||.||.+++++||.++..|..+...|+.++..|+.+.+
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~ 89 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELD 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTT
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999997776666555555555544444433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.58 E-value=3.1e-07 Score=75.44 Aligned_cols=68 Identities=26% Similarity=0.366 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 276 ~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
++-..+|..||.++||.+|+.||.||.+++.+||.++..|..+...|+.++..+ ..|.+.++.+++.+
T Consensus 21 eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~-------~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL-------ARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 345688999999999999999999999999988887777766655555555554 45566666666554
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.23 E-value=0.00059 Score=48.40 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
|+|+.+||.+++.|+..|.+|..++..|+.|+..||
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 589999999999999999999999988776554444
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.92 E-value=0.00041 Score=56.80 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSR 310 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~ 310 (387)
-...|..||+.+||.+|++||.||.+.+++|+.
T Consensus 58 l~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 58 RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 356778899999999999999999999888763
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.66 E-value=0.0096 Score=43.91 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.++|-++|+.|+.||..|+.|++.-..++.+|+.|-..+++-|+.+.+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 578999999999999999999999999999999999999999887754
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.27 E-value=0.021 Score=45.90 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLS-------ENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~-------ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+.-|+.+++.|+.+|..|..+++.++ +++.+|+.|...+.++|..+.+
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666644 4444444444444455555444
No 16
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.16 E-value=0.026 Score=45.39 Aligned_cols=40 Identities=35% Similarity=0.394 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 342 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~ 342 (387)
+-++.|+.+|+.+-....-|+.++..|++++..|..|+..
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888877776666666666666666665544444
No 17
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.1 Score=46.43 Aligned_cols=81 Identities=16% Similarity=0.065 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
..+.+..++..+.+...++.-....+++.+-..-++.|+.|...|.-++..++++...|+.||..|-+++-......++.
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~ 143 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEA 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554445556666666778899999999999999999999999999999999988877776665
Q ss_pred c
Q 016555 358 L 358 (387)
Q Consensus 358 ~ 358 (387)
.
T Consensus 144 M 144 (152)
T 3a7p_A 144 M 144 (152)
T ss_dssp C
T ss_pred H
Confidence 4
No 18
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=95.95 E-value=0.028 Score=46.72 Aligned_cols=50 Identities=28% Similarity=0.315 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKS-------EINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~-------el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+++-+|+.+++.|+.||..|+. +|..|..++++|+.||..|+.+-+....
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556788999999888888887 7888888888899999888877554433
No 19
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=95.83 E-value=0.042 Score=41.21 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKV 312 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV 312 (387)
.+-+||.++|+||.|=+..++....-.
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~va 31 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVA 31 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999988777665544333
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.77 E-value=0.049 Score=47.49 Aligned_cols=54 Identities=19% Similarity=0.055 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+.+++++.|+.+++.+..|+..|+.++..++.+++.++.|+..|++++..+...
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777777777777777766666666666666666666666555443
No 21
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=95.72 E-value=0.037 Score=39.35 Aligned_cols=45 Identities=27% Similarity=0.160 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.+.+|+.+|..|+.||..|+.+.---+.-+.-|+.|...||.+|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999887777777888889999988875
No 22
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.49 E-value=0.054 Score=41.19 Aligned_cols=40 Identities=33% Similarity=0.410 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
..-|.+|++|..-|..|.+|+..|+.++..|..||..||.
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 4447889999999999999999999999999999999983
No 23
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=95.48 E-value=0.016 Score=39.27 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
+++.+||.+|+.|-.+|..|..++.+|+.
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35788999999999999999999988865
No 24
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=95.46 E-value=0.014 Score=39.38 Aligned_cols=28 Identities=29% Similarity=0.518 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
++.+||.+|+.|..+|..|..++.+|+.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3578999999999999999999988865
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.43 E-value=0.15 Score=52.04 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+++++++.+.|+.|..+|+.+++..+++..+|+.|+..++++|+++..
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555666666666666665544
No 26
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=95.19 E-value=0.033 Score=44.58 Aligned_cols=54 Identities=26% Similarity=0.259 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
+++++..+++.|+.+|+.|..+|..|+..++.-+.+-..++.+|+.+...+...
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS 60 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 467788888899999999999999988888888888888888887776554443
No 27
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=95.09 E-value=0.031 Score=38.36 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
+++.+|+.+|+.|..+|..|..++.+|++.+
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3578899999999999999999998887644
No 28
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=95.03 E-value=0.086 Score=38.47 Aligned_cols=42 Identities=21% Similarity=0.137 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.++..|+.-|..|..++..|+..|..++.|+..|+.-|++.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqH 44 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQN 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHc
Confidence 578889999999999999999999999999999999887753
No 29
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.95 E-value=0.18 Score=43.96 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
.+.+++++.++..|+.++..++.+++.++++++.|+.++..|..++..+..++
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666666666666666666666665443
No 30
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=94.92 E-value=0.06 Score=40.35 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
++++..|++.|-.|..+++.|+..|.+.+.|+..|..-|++.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567888999999999999999999999999999998887763
No 31
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=94.83 E-value=0.076 Score=44.27 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 016555 331 ENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 331 ee~~~L~~EN~~Lr~~L~~l 350 (387)
++.++|+.|+..||++|..+
T Consensus 75 ~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666554
No 32
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=94.81 E-value=0.028 Score=38.54 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSE 334 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~ 334 (387)
++.+|+.+|+.|..+|..|..++.+|++.+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5678999999999999999999988876543
No 33
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=94.72 E-value=0.037 Score=37.49 Aligned_cols=29 Identities=7% Similarity=0.271 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
+++.+||.+|+.|-.+|..|..++.+|+.
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35788999999999999999999988875
No 34
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=94.54 E-value=0.14 Score=40.39 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
.++..+++.++.+|+.|..+|..|+..++.-+.+-..++.+|+.+...+...
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~K 54 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGK 54 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4677888888888888888888888888888877777777777765544433
No 35
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.42 E-value=0.11 Score=39.51 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..+.+.|+.+...|..+...|+.++..|+.|+..|+.-|.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34577777777777777777777777777777777766654
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.26 E-value=0.24 Score=50.59 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
++.+..++.+.+.++.+++.++++++.++++++.|+.|...|+.+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHH
Confidence 344445555555555555555555555544444444444444443
No 37
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=94.23 E-value=0.21 Score=42.67 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.+|+.|+.|+..|.++++.+..+.++|+.+|..|..+|..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 3466777777777777777777777777777777766643
No 38
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=94.22 E-value=0.057 Score=36.41 Aligned_cols=27 Identities=4% Similarity=0.244 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
+.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678999999999999999999888865
No 39
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=94.18 E-value=0.27 Score=36.76 Aligned_cols=36 Identities=33% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
++.|+.+...|..+...|..++..|+.|+..|+..|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555544
No 40
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=94.11 E-value=0.056 Score=36.70 Aligned_cols=29 Identities=7% Similarity=0.368 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
+++.+||.+|+.|-.+|..|..++.+|++
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 35778999999999999999999988865
No 41
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=93.96 E-value=0.062 Score=36.47 Aligned_cols=28 Identities=7% Similarity=0.318 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
++.+||.+|+.|-.+|..|..++.+|++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999999999999988865
No 42
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=93.92 E-value=0.45 Score=35.88 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+..|+.+...|..+...|+.++..|+.|...|+..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444443
No 43
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=93.78 E-value=0.07 Score=36.18 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
++.+|+.+|+.|-.+|..|..++.+|++
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678999999999999999999988875
No 44
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.77 E-value=0.23 Score=36.57 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
.+.+|+.++..|.+.|..|..-+...++++..|..|.+.|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345666666666666666666666665555555554443
No 45
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.68 E-value=0.054 Score=51.74 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
..+.+|+.++..|..+|..|..+++.|++++.+|+.|++.|+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666666555555555544443
No 46
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.68 E-value=0.26 Score=36.36 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.++..|+.++..|..++..|.+-+...+.|...|+++|..+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777888888888888888888888888888888888765
No 47
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=93.65 E-value=0.22 Score=35.33 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+..|+.+-..|..++.+|.+.+..|..||..||+-|+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4556666666666666666666666666666665543
No 48
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.63 E-value=0.56 Score=38.00 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
++..++..|++++..|+.++..|+.+|.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433333
No 49
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=93.53 E-value=0.091 Score=35.42 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
+.+||.+|+.|..+|..|..++.+|++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678999999999999999988888765
No 50
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=93.43 E-value=0.19 Score=39.82 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+++++||.++..++.-..+|...|.+.+.+++.|+.+...|.++|+.+..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57888999999999999999999998888999999999888888887654
No 51
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=93.42 E-value=0.47 Score=38.79 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 295 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 295 RRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
+|-|++-+-|...= +...+ .+...|..++..|..+.+.|+.|+..+..++..+....
T Consensus 29 ~RRtlKNRgyAq~C--R~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 29 KRRTLKNRGYAQSC--RYKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 22222 34466667777777777778888888888887776544
No 52
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.32 E-value=0.14 Score=37.82 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
..|+.|+.||.+|+.++..|+++++.|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655555544443333
No 53
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=92.83 E-value=0.3 Score=36.66 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 320 ASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 320 ~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..|..++..|..++..|..++..|+.++..
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 54
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=92.81 E-value=0.16 Score=37.55 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 317 DENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 317 ~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.+...|+.++..|+.+++.|..++..|+.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677888888888888888888887777775
No 55
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.72 E-value=0.75 Score=51.75 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 016555 333 SEKLRQENAALLVCHINVI 351 (387)
Q Consensus 333 ~~~L~~EN~~Lr~~L~~l~ 351 (387)
+..|+.||..|++++.++.
T Consensus 1025 v~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1025 VSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555544
No 56
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=92.53 E-value=0.94 Score=35.96 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
.+++|+.+-..|+.+...|..++..|+
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 57
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=92.30 E-value=0.55 Score=39.28 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
++-|..+++.++....+|+.++....++++.++..+..|+.++..+...
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444433
No 58
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=92.24 E-value=0.011 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 016555 279 RELKRERRKQSNRESARRSRLRKQA 303 (387)
Q Consensus 279 ~e~KR~RRk~rNRESARRSR~RKq~ 303 (387)
...+..||+-+||+||++||.||.+
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4677889999999999999999864
No 59
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=92.22 E-value=0.58 Score=36.49 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 016555 312 VDSLIDE 318 (387)
Q Consensus 312 V~~L~~E 318 (387)
+..|+.+
T Consensus 31 i~~LE~~ 37 (70)
T 1gd2_E 31 LKALETQ 37 (70)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 60
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=91.96 E-value=0.24 Score=34.08 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 316 IDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 316 ~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
-.||..|..+|..-.+++..|+.||..|++
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 468999999999999999999999998874
No 61
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=91.64 E-value=0.22 Score=32.85 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
++..|+.+|.+.++||-+|.+++..|..+|
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 356778888888888888888887776654
No 62
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.57 E-value=0.75 Score=34.93 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 316 IDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 316 ~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+.....|..++..|+.++..|+.|+..|+++|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666555555555555555554
No 63
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=91.47 E-value=1.5 Score=35.44 Aligned_cols=54 Identities=20% Similarity=0.181 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 290 NRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
-||+|+.-+-=++.+.+.|+.-.+.|..|...-+.+|.. |+.++..++..|..+
T Consensus 24 KrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~-------le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 24 KREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIER-------LQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 456666654334444444444333333333333333333 344444444444444
No 64
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=91.05 E-value=0.62 Score=42.75 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
.|..++..|..++.....|++.|+++++.|
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl 53 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSL 53 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 65
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=90.79 E-value=0.66 Score=46.61 Aligned_cols=58 Identities=14% Similarity=0.010 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
-.++++++|+++++.|+.++..|..++.+|++++.+.+.+.+.|..+|+++.+...+.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 3457778888888888888888888888888888888888888888888886644443
No 66
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.35 E-value=6.5 Score=33.14 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+..|+.++..|+.++..|+..|..|.+.++.|+...+..-.-|..+..
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~ 84 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQ 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHH
Confidence 556777777777777777777777777777777666666666655544
No 67
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=90.29 E-value=0.36 Score=32.76 Aligned_cols=28 Identities=7% Similarity=0.239 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
++.+|+.+|+.|-.++..|..++.+|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678888999998888888888888765
No 68
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=90.02 E-value=0.48 Score=37.65 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
|-.||+.|..|+..|+.++..+++-..+++..+..|.+
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333333333333333
No 69
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=89.78 E-value=4.6 Score=32.12 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+.+++++.|.+--+.|..=-+.|..-|.+|.++...|......|+.+.+++..
T Consensus 22 q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 22 RAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666777777788888888888888888888777654
No 70
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=89.60 E-value=1.8 Score=34.91 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 314 SLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.--.||..|..+|..|++++..|+.+|..|++-...
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334588889999999999999999999888876554
No 71
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=89.54 E-value=1.3 Score=35.34 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 315 LIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 315 L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
--.||..|..+|..+++++..|+.||..|++-+...
T Consensus 32 aL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 32 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888999988887766554
No 72
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=89.41 E-value=0.89 Score=45.89 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
+++++|+++++.|+.++..+..++..+++++.+.+.+.+.|..+|.++.+...+.
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~ 64 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVF 64 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5677777788888888888888888888888777788888888888876644333
No 73
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.41 E-value=0.59 Score=36.76 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el 326 (387)
+.+++|+.++..++.++..|+.++
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333333
No 74
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.37 E-value=2 Score=35.10 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
++.+|+.+-..|..+...|..+...|
T Consensus 26 eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 75
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.37 E-value=2.4 Score=33.28 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+++.++.++...+..+..+..+|..|+.++..|+.+...+.++|.....
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555554433
No 76
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.25 E-value=1.6 Score=34.32 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~ 335 (387)
|.+++...+.+++.|+.+.+++..+|..|+.++++
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555554444444444444444433
No 77
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=89.06 E-value=0.36 Score=46.10 Aligned_cols=44 Identities=23% Similarity=0.117 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+.+++.|+.++..|..++..|.+++..++.|+..|+++|+.+..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66889999999999999999999999999999999999999855
No 78
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=89.05 E-value=1.6 Score=35.06 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 290 NRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
|=.||-.+-.|-|+ -+..++...+..|..+.+++.....++..|..|...|+.+|+++..
T Consensus 14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444444333333 2344567778888888899999999999999999999999988643
No 79
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.00 E-value=1.7 Score=37.00 Aligned_cols=47 Identities=23% Similarity=0.186 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 298 R~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
...-+.++.+|+.+|..|+.|+..-+........+++.|+.|+..|+
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888877777776666666666666666553
No 80
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.98 E-value=2.4 Score=35.08 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016555 330 SENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 330 ~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+.+...++..|..|+++|.+
T Consensus 75 r~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666654
No 81
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=88.97 E-value=1.3 Score=34.68 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 319 NASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 319 N~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
...|..++..|+.+.+.|+.+|..|+.+|..+.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666667777777777778888888877653
No 82
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=88.85 E-value=2.1 Score=35.72 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
|..+++++..+.+|+.|+.+...++..++..+..|..+...|+++|.+-
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999999999999998863
No 83
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.82 E-value=8 Score=31.58 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~ 341 (387)
.|+.++..++.++..+..+|..|+.++..|+.+..
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 84
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=88.80 E-value=1.5 Score=34.90 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQL------SENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L------~ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
|.+++.|+.+++.|+.+...|..++..- -.++..|..+...|..+|..+...+.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999998888631 24566677777777777777666554
No 85
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.76 E-value=4.5 Score=37.72 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=5.3
Q ss_pred ccccccccc
Q 016555 372 ECFCCNLLI 380 (387)
Q Consensus 372 ~~f~~n~l~ 380 (387)
-|..|...+
T Consensus 200 ~C~GC~~~l 208 (256)
T 3na7_A 200 ACGGCFIRL 208 (256)
T ss_dssp BCTTTCCBC
T ss_pred ccCCCCeee
Confidence 566666554
No 86
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=88.68 E-value=1.5 Score=34.73 Aligned_cols=53 Identities=15% Similarity=0.028 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
++|+.|+..|+....-+..-|+.|.+.+.+...++..|+.+|+.+........
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46888888888888888888888888888888888888888888877655433
No 87
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=88.52 E-value=3.2 Score=30.37 Aligned_cols=48 Identities=25% Similarity=0.222 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.+..++++..++..++.+...++.++..+.+.+...+.+...|+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555543
No 88
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.45 E-value=1.5 Score=45.85 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
+|++++..|+.+.+.-.+.|+.|+.-++.++.+..+|.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333444444444444444444433
No 89
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.37 E-value=6 Score=35.63 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=25.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~ 328 (387)
.++.-=+.=|+.|.+-.+.+.+|+.++..|+.|...++..+..
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k 115 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK 115 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556666666676677777666666665555554433
No 90
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=88.31 E-value=0.55 Score=36.90 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el 326 (387)
||..|+.+++.|+.+...|+.++
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333333333333333
No 91
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=88.25 E-value=2.2 Score=34.42 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 315 LIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 315 L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
--.||..|..+|..+++++..|+.||..|++-..
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888888888888776544
No 92
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=88.25 E-value=6.5 Score=30.08 Aligned_cols=56 Identities=20% Similarity=0.119 Sum_probs=35.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
-..+||+-|-.-=. ..+++|...+..-..+....+.+|.+|+..+..|+.|...||
T Consensus 21 ia~knr~EaE~~y~---~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 21 VAAKNLQEAEEWYK---SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456655544222 235567777776666666677777777777777777776665
No 93
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=88.22 E-value=1.3 Score=31.88 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
|...--+|+..-+.|.+-|..|+.++.+|+.|
T Consensus 15 lkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 15 LKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444333
No 94
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=88.12 E-value=2.8 Score=34.89 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
..+.+|+.+|+.|+.||+.|+.+.+..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555544433
No 95
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=88.11 E-value=3.1 Score=35.23 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+++-..|.+++.|+.++.+|+.+++....-...|-.+|..|..++.
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~ 56 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHT 56 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 3444445566666666666766666655555556566666654443
No 96
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=87.91 E-value=0.79 Score=38.72 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~ 328 (387)
.-+|+|+.++..|+-||..|++++..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34799999999999999999999974
No 97
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=87.86 E-value=2.9 Score=30.86 Aligned_cols=37 Identities=8% Similarity=0.198 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 340 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN 340 (387)
.+++|..+|..|..+...|..++..|+.+......|-
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555554444443333
No 98
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.81 E-value=1.2 Score=46.59 Aligned_cols=38 Identities=16% Similarity=-0.023 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
+|+.+|..|+++++.-...++.|+..|++++.+-....
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665555555666666666554433333
No 99
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=87.79 E-value=2.2 Score=30.62 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
-|..++..|+..|-+|...-+.|.+-+..|+.|...|..++
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 35556777777777777777777766666666666666554
No 100
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.78 E-value=3 Score=35.25 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
+..|+.|...|+.....|+..+..|+..|+.|-.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 3444444444444444444444444444444443
No 101
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.77 E-value=8.4 Score=30.07 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 291 RESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+.|..--..-...+.+.+.+...++.+...|..+|..|..+++.+.........+|....
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455556677777788888888888888888888888888887777777777653
No 102
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=87.69 E-value=5.7 Score=31.75 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+-+|..+++.|+.|...|+-+++.+.-++..|......+-..|...
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777777777777766666666665555555443
No 103
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=87.68 E-value=2.1 Score=33.59 Aligned_cols=49 Identities=14% Similarity=0.054 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
++..-+.++..|+....--.+..++|..++-.|--||..|.++|..+..
T Consensus 26 eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 26 ELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3334445555555555555556678888888889999999999887643
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.68 E-value=5.9 Score=39.48 Aligned_cols=48 Identities=15% Similarity=0.109 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
.++|.+.+.++++....+.+++.|+++.++|+.++..|..++.+....
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 334444444445555555555555555555555555555555544443
No 105
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.58 E-value=3 Score=33.97 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 340 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN 340 (387)
+.|+.++..++.++..+..+|..|+.++..|..+.
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 106
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.45 E-value=8.1 Score=32.58 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhh
Q 016555 289 SNRESARRSRLRKQAEAEELSRKVDSLID---ENASLKSEINQLSENS-------EKLRQENAALLVCHINVII 352 (387)
Q Consensus 289 rNRESARRSR~RKq~~~eeLe~rV~~L~~---EN~~L~~el~~L~ee~-------~~L~~EN~~Lr~~L~~l~~ 352 (387)
.|=.+|.+.=..|+..|++|++++..++. +..-|++++...+... ++|-.|...|.++|..+..
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 34556666667788888888888877777 5666777777665443 4455666666666665544
No 107
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.96 E-value=3.6 Score=37.04 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 292 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 292 ESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
|++.| +||++ .+|...+..++..+.+|...+..|......|..|+..|..+|..
T Consensus 27 E~~~r--lkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 27 DTAVR--LRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 55554 45555555555555555555555555555555555555555444
No 108
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.80 E-value=12 Score=30.62 Aligned_cols=35 Identities=9% Similarity=0.267 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
.+..++.+...++.+...|..++..|..+++.+..
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333333
No 109
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=86.71 E-value=1.2 Score=35.27 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.|+.+...|..+.+.|+.|+..|+.+|.+
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444445555555555555543
No 110
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.13 E-value=15 Score=31.32 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 316 IDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 316 ~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
+.+.++|+.||..|.+++..+.+|...||.+.+.+.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 334566666666666666666666666666655443
No 111
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=86.05 E-value=2.9 Score=38.78 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 318 ENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 318 EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
||..|..+|..|++++..|+.||..|++
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544
No 112
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=85.95 E-value=1.7 Score=42.82 Aligned_cols=47 Identities=13% Similarity=-0.046 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+++..||..|...+.+...|+.++..++.++++|..+...|+.++..
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666666666667777777777766666666666666665543
No 113
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=85.95 E-value=1.5 Score=28.82 Aligned_cols=24 Identities=42% Similarity=0.434 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
.|++++..|++++..|+-|...|+
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 114
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=85.93 E-value=3 Score=33.35 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 319 NASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 319 N~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
...|..+...|..+.+.|+.+|..|+.+|.++.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666777777777778888888888888764
No 115
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=85.88 E-value=0.48 Score=30.18 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
++.|+-||..|.+++..|++++..|+
T Consensus 2 idalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHHHhc
Confidence 35677788888888877777666553
No 116
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.85 E-value=13 Score=34.08 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+..|+.++..|+..+..|+..|..|...++.|+...+.+..-|..
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 344444444444555555555544444444444444433333333
No 117
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=85.83 E-value=0.45 Score=37.68 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 318 ENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 318 EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
|...|+.+|.+|.+++.+|+.||..||.-.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445566777777777777888888887543
No 118
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=85.76 E-value=0.35 Score=45.69 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 016555 315 LIDENASLKSEINQLSE---NSEKLRQENAALLVCHIN 349 (387)
Q Consensus 315 L~~EN~~L~~el~~L~e---e~~~L~~EN~~Lr~~L~~ 349 (387)
|.+||++|++|+.+|+. +++.|+.||.+|++.|..
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455555555544443 345678899999887764
No 119
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=85.52 E-value=1.1 Score=42.36 Aligned_cols=73 Identities=14% Similarity=0.034 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 280 ELKRERRKQSNRESARRSRLRKQAEAEELS-------RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 280 e~KR~RRk~rNRESARRSR~RKq~~~eeLe-------~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+.||-||.++-=.==.|.|+-|...++++. .++++|+.||++|+.+|+.|+++..+.+.+..-.+..+.++..
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~ 197 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYH 197 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 356777776655445555555555555544 4455555555555555555554444444333322333344433
No 120
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=85.49 E-value=3 Score=32.83 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=35.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKVDSL---IDENASLKSE---INQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV~~L---~~EN~~L~~e---l~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
|+..-..+-|+-|.+=...+.+|..-|-.. ......|..- |..|+.+...|..|+..|+.++++.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344555555555566777777544321 1111222222 3456777777777888888777654
No 121
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.39 E-value=5.7 Score=44.67 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+.++.++..|+.|+..|+.+++.+.++.+.|+.++..|+++|++
T Consensus 980 ~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~ 1023 (1080)
T 2dfs_A 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555444443
No 122
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=85.38 E-value=9.6 Score=30.81 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 318 ENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 318 EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+...|+.+|..+..+...|..|...|.+.+.
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 123
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.38 E-value=0.66 Score=39.41 Aligned_cols=26 Identities=4% Similarity=-0.068 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 329 LSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 329 L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
++..+..|+.+...+|.++..+..+.
T Consensus 80 ~q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 80 ARNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444455556666666555554443
No 124
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=85.32 E-value=1.4 Score=29.95 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016555 330 SENSEKLRQENAALLVCH 347 (387)
Q Consensus 330 ~ee~~~L~~EN~~Lr~~L 347 (387)
+++++.|+.+|..|.+++
T Consensus 13 qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 333333334444444444
No 125
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=85.18 E-value=5.7 Score=31.84 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=36.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
.-++.+.+-++-=.+=+.....++.++...+..|..|..++..|+++.+.|+.+
T Consensus 21 aEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 21 EEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444444444444456666777888888888888888888888877776544
No 126
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=84.86 E-value=9.5 Score=30.31 Aligned_cols=59 Identities=20% Similarity=0.113 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 297 SR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
-|+|=++.+..-+.+++.|+.-.++|+.--..|..-+.+|..|-..|...|.-+.....
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566688888888899999888888888888888888888888888888877765443
No 127
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=84.80 E-value=1.2 Score=28.94 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L 329 (387)
|..-+..|++||.+|+.++++|
T Consensus 4 lnallasleaenkqlkakveel 25 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444554444444443
No 128
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=84.79 E-value=8.8 Score=30.63 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 313 DSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
-.|..++..|+.+|..|+-+++.+.-++..|+++.++++..+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555554433
No 129
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.75 E-value=6 Score=39.23 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 330 SENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 330 ~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+.++++|+.|...|..+|+.+..+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 130
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=84.66 E-value=2.9 Score=30.83 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 325 EINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 325 el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
-+..|..++..|+.||..|+.+|..+..
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666665543
No 131
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.59 E-value=8.1 Score=38.47 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~ 334 (387)
|.+++++..+.+++.|++||+.|+.++.++..+.+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 34444444455555555555555555554444433
No 132
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.53 E-value=1.4 Score=44.61 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+|..+++.|+.+...|..+.+.|+.+...|+.|...++++++.+.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555555566666666666666666666666666666666666553
No 133
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=84.47 E-value=1.5 Score=35.20 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
+..|+.++..|..++..|+.++..|+.+...|
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444555555555555444
No 134
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.42 E-value=1.7 Score=43.52 Aligned_cols=48 Identities=13% Similarity=-0.016 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
++++++|+++++.|+.++.+|.+++...+.+..+|-.+...|+..|+-
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 16 KEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 345566666666666666666666666666666666666666655544
No 135
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.35 E-value=16 Score=30.11 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
++..|+.++...+.+...|..++..-+......+.++..|..+|+.|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555444444444444444444444444444
No 136
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=84.20 E-value=6.1 Score=28.80 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+..|+..+..+..+...++.++..++.++.++..+....++.|..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666666666553
No 137
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=84.20 E-value=8.3 Score=31.68 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 016555 288 QSNRESARRSRLRKQAEAEELSRKVDSLI---DENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 288 ~rNRESARRSR~RKq~~~eeLe~rV~~L~---~EN~~L~~el~~L~ee~~~L~~ 338 (387)
..|-.+|-..=..|+..|++|...+..++ ..+..|+.++...++.+..=|+
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERa 61 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERH 61 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777789999999998888877 5667788888877665544333
No 138
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=84.04 E-value=0.54 Score=44.51 Aligned_cols=43 Identities=9% Similarity=-0.064 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
..++.+..+.+++..+++.|++++..++++++.|+.++.+...
T Consensus 141 ~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~t 183 (250)
T 2ve7_C 141 ETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTT 183 (250)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455666666677777777777766666666666666655443
No 139
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=83.87 E-value=3.8 Score=28.97 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 325 EINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 325 el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
++..|..+++.|+.....|+.+|+.+
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555556666666554
No 140
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=83.76 E-value=5 Score=29.55 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.+++.|..+.+.|..++..|+.+...|+.+...-+++..+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RA 44 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777777666666655543
No 141
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.75 E-value=15 Score=29.26 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
+-.....+|+.+...|..+...|..++..+.+.+..|......|-.+|..+...+
T Consensus 32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334556778888888888888888888888888888888888888888775543
No 142
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=83.67 E-value=1.6 Score=29.72 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 317 DENASLKSEINQLSENSEKLRQENAA 342 (387)
Q Consensus 317 ~EN~~L~~el~~L~ee~~~L~~EN~~ 342 (387)
.+|+...+.|+.|+.++..|+.+.+.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555554443
No 143
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=83.65 E-value=2.2 Score=41.44 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+++++.|+++|+.|+.++++|+++.+.+...|.+.+++|+....
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~ 227 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSAD 227 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45666777777777777777766666666655555555554443
No 144
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=83.61 E-value=20 Score=32.76 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 314 SLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
.|+.++..|+.....|+..+..|+..|..|..
T Consensus 92 ~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 92 VLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33333333333333333333334444443333
No 145
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=83.54 E-value=15 Score=30.47 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=7.7
Q ss_pred HHHHHhHHHHHH
Q 016555 285 RRKQSNRESARR 296 (387)
Q Consensus 285 RRk~rNRESARR 296 (387)
+|.-+|+.|-+.
T Consensus 34 ~ri~~NtqaI~~ 45 (114)
T 2xzr_A 34 GRVTRNTQSIEK 45 (114)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHh
Confidence 466677777663
No 146
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=82.88 E-value=6.7 Score=30.70 Aligned_cols=49 Identities=14% Similarity=-0.006 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
...+..+..|+.++..++.+.+....+.+.|-.-...|..|+...+.-|
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444455544444445555555555443
No 147
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=82.73 E-value=2.1 Score=28.18 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
+..|..+|+.|++.|-.-+++++.|+.+|
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45677777778877777777777776655
No 148
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=82.69 E-value=1.2 Score=33.09 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
+.++++...++.|..||..|+.++..|++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666665544
No 149
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.47 E-value=18 Score=29.31 Aligned_cols=31 Identities=10% Similarity=0.339 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
.|..++..|+.+...|..+|..++.+...|.
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444443
No 150
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=82.30 E-value=9.2 Score=29.95 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.|+.+++.-+.+-..++.++..|.+.++.--.|...|+..|..
T Consensus 25 ~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 25 EMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333333333333334444444444433333444444444433
No 151
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=82.27 E-value=10 Score=39.17 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 297 SRLRKQAEAEELSRKVDSLIDENAS----------LKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 297 SR~RKq~~~eeLe~rV~~L~~EN~~----------L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
-|+.-+.++++|+.+.+.+..+... |..++..|++++..|+.+...|.++|..+
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666655433 44444555555555555555555555443
No 152
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=82.24 E-value=11 Score=33.94 Aligned_cols=26 Identities=23% Similarity=0.159 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 324 SEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 324 ~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.+|+.|.+++..|+.+...++.++..
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~k~~~ 138 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRVKRDV 138 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443
No 153
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.98 E-value=17 Score=30.63 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.+.-|+++|+.++..-..=+.--+++..+.+.|..+++.|+.++..+
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 467777888888877777767777788888888888888888887654
No 154
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=81.92 E-value=8.3 Score=39.87 Aligned_cols=28 Identities=14% Similarity=0.065 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 322 LKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 322 L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
|+.++..|++++..|+.+...|.++|..
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 155
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=81.52 E-value=1.2 Score=28.42 Aligned_cols=16 Identities=50% Similarity=0.598 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 016555 315 LIDENASLKSEINQLS 330 (387)
Q Consensus 315 L~~EN~~L~~el~~L~ 330 (387)
|++.|..|++++..|.
T Consensus 5 lkqknarlkqeiaale 20 (28)
T 3ra3_B 5 LKQKNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHH
Confidence 4444444444444443
No 156
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=81.30 E-value=15 Score=36.82 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 299 LRKQAEAEELSRKVDSLIDE--------NASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~~L~~E--------N~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.-+.++++|+.+.+.+..+ ..+|+.++..|++++..|+.+...|.++|..+
T Consensus 38 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 38 QELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555444432 23455555566666666666666666665544
No 157
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=81.14 E-value=2.2 Score=33.60 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
+||..|+.+++.|+.++..|+.+++..+
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6778888888888888877777776543
No 158
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=81.03 E-value=7.4 Score=31.17 Aligned_cols=45 Identities=27% Similarity=0.244 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLK-------SEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~-------~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+++.+|.-+|..|+.|-.+.. .++..|+++++.-.+|...|+.+|
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444443333 333344444444444444444443
No 159
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=81.02 E-value=14 Score=31.23 Aligned_cols=16 Identities=25% Similarity=0.100 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 016555 334 EKLRQENAALLVCHIN 349 (387)
Q Consensus 334 ~~L~~EN~~Lr~~L~~ 349 (387)
..|..++..|+.+|..
T Consensus 107 kkle~e~~~Lk~~led 122 (129)
T 2fxo_A 107 RKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 160
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=80.90 E-value=3.1 Score=28.17 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+|..+++.|-.++..|+.|+..|++-|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455555666566666666666666544
No 161
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=80.75 E-value=1.8 Score=28.20 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 329 LSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 329 L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
|..-+..|++||.+|+.+++++...
T Consensus 4 lnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667888888888888887653
No 162
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=80.64 E-value=11 Score=30.03 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+..|+.+++.-+.+-..++.++..|.+.++.---|...|+..|..+
T Consensus 29 v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 29 LRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3344444444444444444555555444444445555555555443
No 163
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=79.89 E-value=3.9 Score=28.00 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+|..++++|..+...|+.|...|++-|.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4555566666666666666666665554
No 164
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=79.77 E-value=20 Score=28.94 Aligned_cols=42 Identities=24% Similarity=0.154 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhh
Q 016555 311 KVDSLIDENASLKSEINQLSENSE-----KLRQENAALLVCHINVII 352 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L~ee~~-----~L~~EN~~Lr~~L~~l~~ 352 (387)
+|..|+++|..|..++..|+.+.. ....+...||.+|..+..
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ 70 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTN 70 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555543221 123444444444444433
No 165
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=79.76 E-value=4.1 Score=32.06 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEK 335 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~ 335 (387)
+||..|+.+...|+.|+..|+.++..|+.++.+
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667777777777777766666666666655443
No 166
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=79.62 E-value=13 Score=38.31 Aligned_cols=59 Identities=8% Similarity=0.141 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKS-----------EINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~-----------el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
.-+.++++|+.+.+.+..+...|+. +.+.|.++...|..+...|.+++.++..+....+
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544432 2334555555555555555555555555444333
No 167
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=79.48 E-value=4.6 Score=26.55 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L 329 (387)
.|.+++..|+.|...|+-++..|
T Consensus 6 alkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 168
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.15 E-value=5.7 Score=36.43 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
..-|..|..||..|.++++....+++.|+.+...|++++
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334555555555555555555555555555555555544
No 169
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=79.06 E-value=17 Score=30.59 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
+++.|+.++..|+.........+.+|..++..|
T Consensus 19 e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~l 51 (125)
T 1joc_A 19 EIEKLQTKVLELQRKLDNTTAAVQELGRENQSL 51 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 344444444444444443333333333333333
No 170
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.78 E-value=13 Score=31.54 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+-+..|..|+..+..|..++..-+........||..|+.++..+.
T Consensus 36 ~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 36 TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567777777777888887777777788888999998888763
No 171
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=78.59 E-value=5.4 Score=36.36 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
+.++.|-.++..|+.+|..|.+++++|+.+
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444444433
No 172
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=78.47 E-value=4.2 Score=40.97 Aligned_cols=47 Identities=19% Similarity=0.074 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+++++|+++++.++.++..|.+++.....+..+|-.+...|+..|+-
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 44456666666666666666666666666666666666666655443
No 173
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=78.43 E-value=8.1 Score=30.45 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEK 335 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~ 335 (387)
++||.+|+.|+.-...|..++.+|-.++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s 32 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYES 32 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777776655543
No 174
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=78.22 E-value=12 Score=29.30 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+.+.++..+..|+.+...++.++.....+++.|..-...|-.+|..-.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668888899999999999999999888888888887777777776543
No 175
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=78.16 E-value=9.3 Score=38.47 Aligned_cols=17 Identities=6% Similarity=0.055 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHHHhHHH
Q 016555 277 NERELKRERRKQSNRES 293 (387)
Q Consensus 277 dE~e~KR~RRk~rNRES 293 (387)
-|++.+....+++|+..
T Consensus 61 ~er~~~~rIe~L~~~L~ 77 (390)
T 1deq_A 61 VDQDFTSRINKLRDSLF 77 (390)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 34566666666666554
No 176
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=78.09 E-value=7.9 Score=39.39 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 300 RKQAEAEELSRKVDSLIDENA----------SLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~----------~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.-+.++++|+.+.+.+..+.. +|+.++..|++++..|+.+...|.++|..+
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445544444444433 334444444444444444444444444443
No 177
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=77.96 E-value=3 Score=32.30 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
.|.+.+.+||..++.-..++.+|+.++..++.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888887777777766544
No 178
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=77.48 E-value=16 Score=29.40 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=30.4
Q ss_pred CccccccHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 271 PETWIQNERELKRERRKQSNRESARRSRLRKQ--AEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 271 ~e~~~~dE~e~KR~RRk~rNRESARRSR~RKq--~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
++.| -.+|.-++-+=.+.++..+--.+|++ ++++.-..+++.|+.+...++..|..|+.
T Consensus 19 ggaF--gKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 19 GGAF--GKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc--ccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445 33344444443333444444445555 55566666666666666666666655543
No 179
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=77.41 E-value=13 Score=30.00 Aligned_cols=56 Identities=7% Similarity=-0.003 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQ-----LSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~-----L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
+++..|+.+++.|+.+...|+.++.. .-++.-.|..|-+.||+--+.+.+..++..
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 44455555555555555555443221 123445566666667766666666555443
No 180
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.40 E-value=4.4 Score=33.66 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
.+..|..+++.|+.||..|+.+++.|.-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555554443
No 181
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=77.36 E-value=2.6 Score=28.43 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
+|..+++.|..++..|+.|...|++-
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 182
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.21 E-value=24 Score=31.31 Aligned_cols=22 Identities=9% Similarity=-0.159 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 016555 331 ENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 331 ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+...++..|..|+.+|.+...
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~~~ 129 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREKDT 129 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655433
No 183
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=77.07 E-value=28 Score=35.93 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 297 SRLRKQAEAEELSRKVDSLIDENASL 322 (387)
Q Consensus 297 SR~RKq~~~eeLe~rV~~L~~EN~~L 322 (387)
-|+.-+.++++|+.+.+.+..+...+
T Consensus 45 ~~r~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 45 KWRRTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566665555555554443
No 184
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.02 E-value=19 Score=30.32 Aligned_cols=21 Identities=10% Similarity=-0.165 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 016555 332 NSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 332 e~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+..|+.+...+|.++..+..
T Consensus 85 ~i~~lE~eL~~~r~em~~ql~ 105 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQQNQ 105 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555544444433
No 185
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=76.98 E-value=6.8 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
+.-..|..+|+.|+..|.+..+||.+|..
T Consensus 18 q~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 18 QMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478899999999999999999998864
No 186
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=76.33 E-value=16 Score=29.18 Aligned_cols=46 Identities=24% Similarity=0.084 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
++|-++|..|+-...+|..+-.+...++..-..|...|+.+|..-.
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd 67 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKD 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhH
Confidence 4555555555555555555555555555556677777777766543
No 187
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=76.25 E-value=10 Score=31.72 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
|++++..++.+...|..++..|+..++.|+.|-+..=.+|+.
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455444444333333
No 188
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.15 E-value=29 Score=28.00 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
.+..++.+...++.+...|..++..|..+++.+..
T Consensus 31 ~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e 65 (101)
T 3u59_A 31 DKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333333
No 189
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=75.87 E-value=13 Score=29.02 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQE---NAALLVCHINVII 352 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~E---N~~Lr~~L~~l~~ 352 (387)
|...|+.|..|+.+|..++..+++++..++.| +..|++.|+....
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~ 49 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLL 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777666655433 2245555554433
No 190
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=75.75 E-value=14 Score=26.63 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+||.+|+.|+.-...|..++.+|-.++.. -...|+.+|..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 56777777777766666666666554432 234555555544
No 191
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=75.60 E-value=7.1 Score=36.11 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~ 328 (387)
...|..+++.|+.+...|..++++
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 192
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=75.49 E-value=6.3 Score=27.00 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+|..+++.|..+...|+.|...|+.-|.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3445555555555555555555555543
No 193
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=75.45 E-value=3.9 Score=26.88 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 326 INQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 326 l~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+..|.++..+.++||-+|..++.++.++
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4556666666777777777777766553
No 194
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=75.33 E-value=6.4 Score=35.88 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
++.|-..+..|+.++..|++++++|+.|-+...++|
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444444443
No 195
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.06 E-value=28 Score=34.40 Aligned_cols=27 Identities=7% Similarity=0.051 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 324 SEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 324 ~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
++|++|+.++..|..+...++.+++++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555544
No 196
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=75.04 E-value=17 Score=28.62 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
|-...+..++..+..|+.+...++.++.....+++.|..-.-.|-.+|.
T Consensus 23 ~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 23 NFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3345566777777777777777777777777777666555555554443
No 197
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=74.87 E-value=6 Score=26.61 Aligned_cols=27 Identities=4% Similarity=0.138 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+|..+++.|-.++..|+.|...|++-|
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445555555555555666666665544
No 198
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=74.56 E-value=20 Score=28.33 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
...++.++..+..|+.+...++.++.....++..|..-...|-.+|
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3455666667777777777777777666666665554444444443
No 199
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=74.46 E-value=2.6 Score=32.87 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
++|.+++..++..+..|..-+.+-..-+.+|..+|..||++|.++.
T Consensus 18 eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 18 EELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555556666666666666666654
No 200
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=74.37 E-value=15 Score=31.84 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
.++|+.++..|+..|..|+.++..++.++..|
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888888777666444
No 201
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=74.09 E-value=8.5 Score=28.57 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+++..+..|+.+...++.++.....+++.|..-...|-.+|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EI 44 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEI 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44555556666666666666555555554444434444333
No 202
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=74.05 E-value=16 Score=29.43 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
+.|..+++.++.|...|+.++..|
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 203
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=73.99 E-value=18 Score=37.39 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~ 328 (387)
+|+.+++.|+++-..+.++|..
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 204
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.88 E-value=19 Score=45.15 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 318 ENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 318 EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+.++|.++++.|+++++.+..|...|+.+++
T Consensus 2036 ~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433
No 205
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=73.61 E-value=17 Score=28.32 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQE-NAALLVCHINVI 351 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E-N~~Lr~~L~~l~ 351 (387)
+|...|+.|..|+.+|..++..+++++..++.| ...|++.|+...
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L 48 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNI 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888888888877766533 444455554433
No 206
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=73.48 E-value=23 Score=36.89 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
+.+|++.+++++|..+-.+-+.++++.
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~er 343 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQER 343 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 207
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=73.45 E-value=34 Score=27.45 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 314 SLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.|+.....|..++..|..+...++.+...|+.+|.++.+
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555566666666777777777777777777777776654
No 208
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=73.06 E-value=3.9 Score=35.32 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSE 334 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~ 334 (387)
+|..+|+.|..|+.+|+.+++.|+.++.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666665555555555555443
No 209
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=72.99 E-value=7.1 Score=26.41 Aligned_cols=27 Identities=7% Similarity=0.116 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+|..+++.|-.++..|+.|...|++-|
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344555555555555555655555543
No 210
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=72.82 E-value=2.2 Score=33.81 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L 329 (387)
+|.|..++..|+..|.+|..|...|
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 211
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=72.72 E-value=22 Score=26.34 Aligned_cols=47 Identities=28% Similarity=0.140 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+..+..|+.++..++.+.+....+.+.|-.-...|..|+...|.-|+
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 46778889999999999988888999888888889999988887665
No 212
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=72.47 E-value=4.3 Score=29.48 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
.+-..||.-|..|+..|..|...|..|...+..|+..
T Consensus 17 kenaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 3445677778888888888888888887777666543
No 213
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=72.42 E-value=13 Score=37.04 Aligned_cols=53 Identities=11% Similarity=0.235 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
|=+.-.+.|..+++.|......|..++......+..|+.+...|+-+|.++..
T Consensus 202 ~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 202 RIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 33444556666666666666666666666666666666666666666655443
No 214
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=71.89 E-value=25 Score=33.25 Aligned_cols=27 Identities=4% Similarity=0.028 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 324 SEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 324 ~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.++..++.+++.++++...++.+|..+
T Consensus 122 ~~~~~a~a~~~~~~~~l~~~~~~l~~a 148 (369)
T 4dk0_A 122 ATLNNAKAEMDVVQENIKQAEIEVNTA 148 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 215
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=71.24 E-value=16 Score=30.34 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
.|++|++.|+.....|...+..+++++..+..+
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333
No 216
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=71.18 E-value=13 Score=33.58 Aligned_cols=39 Identities=8% Similarity=-0.059 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~ 341 (387)
+-+..-++.|..|+.+|..|..++...++++..+..+..
T Consensus 128 eli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 128 ELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666776666666666666655555554433
No 217
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=71.18 E-value=3.1 Score=35.04 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=21.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 016555 284 ERRKQSNRESARRSRLRKQAEAEELSRKVD-------------SLIDE---NASLKSEINQLSEN---SEKLRQENAALL 344 (387)
Q Consensus 284 ~RRk~rNRESARRSR~RKq~~~eeLe~rV~-------------~L~~E---N~~L~~el~~L~ee---~~~L~~EN~~Lr 344 (387)
..|+..--.+-|+-|.+=...+.+|..-|- .|+.- ...|+.+++.|+++ ...|+.+|..|.
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~ 104 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLL 104 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556656555677777765332 23222 23455555555443 556778888888
Q ss_pred HHHHhhh
Q 016555 345 VCHINVI 351 (387)
Q Consensus 345 ~~L~~l~ 351 (387)
.+|+++.
T Consensus 105 ~riqeLE 111 (118)
T 4ati_A 105 LRVQELE 111 (118)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 8887764
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.02 E-value=7 Score=39.48 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
.++..|+++.+.|+.|+..|+.++..|++++..++.|+..|+.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456788888888889999999999999999888888877764
No 219
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=70.95 E-value=18 Score=33.44 Aligned_cols=49 Identities=20% Similarity=0.115 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
++-+.|..+|+.|+.|+..|+.++..|++ |..+...|.+-|.++.+...
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke----Lae~~q~la~vi~~l~~~~~ 163 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAE----VAEHVQYMAELIERLNGEPL 163 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCc
Confidence 34445555566666666666665555543 33344455555555555433
No 220
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=70.77 E-value=14 Score=29.73 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 319 NASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 319 N~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
...|..+++.|..++..|..+...|..++.++...+...
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777777777766555443
No 221
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=70.54 E-value=47 Score=27.89 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.+.+.++..|......|..+|..|...++..+..|..|...-.
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kk 107 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKR 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555554444444444333
No 222
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=70.09 E-value=20 Score=36.38 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~ 328 (387)
+|..+++.|+++...+.++|..
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555543
No 223
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=70.09 E-value=34 Score=34.27 Aligned_cols=15 Identities=7% Similarity=0.302 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 016555 310 RKVDSLIDENASLKS 324 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~ 324 (387)
.+++.|+++...+.+
T Consensus 42 ~~~~~l~~~~n~~sk 56 (421)
T 1ses_A 42 KRLQEVQTERNQVAK 56 (421)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 224
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=70.00 E-value=5.4 Score=27.02 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
+|..+++.|-.++..|+.|...|++-
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34445555555555555555555543
No 225
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=69.98 E-value=21 Score=30.55 Aligned_cols=17 Identities=6% Similarity=-0.011 Sum_probs=10.9
Q ss_pred cCCCccceec--ccccccc
Q 016555 362 EANRSCVFVC--ECFCCNL 378 (387)
Q Consensus 362 ~~~~~~~~~~--~~f~~n~ 378 (387)
...-.|..+. +||+.|-
T Consensus 89 ~qGG~C~~l~e~CCfyind 107 (125)
T 4g2k_A 89 RWGGTCKVLGPDCSIGIED 107 (125)
T ss_dssp GGTCHHHHHCGGGGCCCCC
T ss_pred HcCCcHHHhcccceeeccc
Confidence 4466677765 7777653
No 226
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=69.77 E-value=9.4 Score=25.69 Aligned_cols=27 Identities=15% Similarity=0.001 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+|..++++|..++..|+.|...|++-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 455566666666666666666665543
No 227
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=69.66 E-value=2.2 Score=41.83 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+++..||.+|..++++...|+..++.|++++..|......|..++..
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667777777777777777777777777777776666666655443
No 228
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=69.65 E-value=9.4 Score=29.58 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSL 315 (387)
Q Consensus 302 q~~~eeLe~rV~~L 315 (387)
...+++|..-|-.+
T Consensus 28 n~~f~~Lr~lvP~~ 41 (80)
T 1hlo_A 28 KDSFHSLRDSVPSL 41 (80)
T ss_dssp HHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHCcCC
Confidence 45556666555433
No 229
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=68.99 E-value=4.1 Score=29.96 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el 326 (387)
.+++.|+.+++.|+.++..|+..|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888888777776654
No 230
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=68.88 E-value=55 Score=33.78 Aligned_cols=47 Identities=21% Similarity=0.125 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
++.++|+.++.-|+.....--..|..|+.-++.++.+...|..-|..
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666555544443355555555555555555555544443
No 231
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=68.49 E-value=7.1 Score=26.47 Aligned_cols=27 Identities=7% Similarity=0.171 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+|..+++.|-.+...|+.|...|++-|
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 344555555555555555555555433
No 232
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=68.14 E-value=9.8 Score=26.31 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 327 NQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 327 ~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
....++...|+.+|..|..+|.
T Consensus 16 AsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 16 ANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555543
No 233
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=67.99 E-value=10 Score=25.63 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+|..++++|-.++..|+.|...|++-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 445556666666666666666666544
No 234
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=67.88 E-value=21 Score=32.42 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 294 ARRSRLRKQAEAEELSRKVDSLIDE-------NASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 294 ARRSR~RKq~~~eeLe~rV~~L~~E-------N~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+.+-|.+|+-..+....+++.|+.. ......+++..+++++.| |..|+++|..+..
T Consensus 149 ~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~l---n~~L~~eLp~l~~ 211 (251)
T 2fic_A 149 RIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM---NVDLQEELPSLWN 211 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3334444555555555555554322 122334444444444433 5666666665544
No 235
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=67.77 E-value=26 Score=25.43 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
++-.+.|..+|..|+..+..+.+|+.+|+.
T Consensus 10 Ke~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 10 KQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 345577888888888888888888888754
No 236
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=67.52 E-value=0.093 Score=42.87 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 016555 279 RELKRERRKQSNRESARRSRLRKQA 303 (387)
Q Consensus 279 ~e~KR~RRk~rNRESARRSR~RKq~ 303 (387)
.-.+-.||+-+||++|++||.||..
T Consensus 63 ~lIrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 63 ALIRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHHHhhhhHHHHHHcchhhcc
Confidence 3556788999999999999998853
No 237
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=67.44 E-value=26 Score=24.82 Aligned_cols=37 Identities=27% Similarity=0.137 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
|.+|+.|...|..+.+.|+.++..-..-...|..+|.
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeia 41 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIA 41 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHH
Confidence 4444444444444444444444333333333333333
No 238
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=67.41 E-value=3.3 Score=41.96 Aligned_cols=45 Identities=9% Similarity=-0.025 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+..++..|+........+|..|+..+..+...+..|+.+|.++..
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333344444433334445555555555555555555555555443
No 239
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=67.17 E-value=20 Score=33.55 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
+++..|+++++..+.|++.+.+.+.+.++...+|+.....+.
T Consensus 178 ~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 178 GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456778888888888888888888777776666665555544
No 240
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=67.10 E-value=64 Score=33.18 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhHHHH
Q 016555 280 ELKRERRKQSNRESA 294 (387)
Q Consensus 280 e~KR~RRk~rNRESA 294 (387)
++|..-..+.|+.+.
T Consensus 104 eLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 104 DLKDRVAKFSDTSTT 118 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhH
Confidence 344444445554443
No 241
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=67.09 E-value=17 Score=26.42 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.-|+.|..|+.+...|..++.. -+.++..+.++|..
T Consensus 9 fAERsV~KLek~ID~LEdeL~~-------eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYA-------QKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHH
Confidence 3344444444444444444333 33344445554444
No 242
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=67.08 E-value=17 Score=33.61 Aligned_cols=47 Identities=21% Similarity=0.113 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
+++|+++--....+.+.|+...+.|++|++.|+..|+.+.|-....+
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~I 78 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERI 78 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhcc
Confidence 45566666677777888888888899999999999999888555444
No 243
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=67.03 E-value=44 Score=26.17 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
.+..|+.++..++.+......+.+.|-.-...|..|+...|
T Consensus 34 ~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33334444444444444444444444333334444444333
No 244
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=67.00 E-value=23 Score=32.64 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 016555 313 DSLIDENASLKSEIN 327 (387)
Q Consensus 313 ~~L~~EN~~L~~el~ 327 (387)
..|+.+|..|..++.
T Consensus 142 ~~L~~e~~~l~~~~~ 156 (213)
T 1ik9_A 142 EHLQKENERLLRDWN 156 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 245
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=66.61 E-value=12 Score=28.74 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016555 327 NQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 327 ~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..|++++++|..|...|..+|..
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666666666666666666654
No 246
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=66.33 E-value=38 Score=28.34 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 016555 335 KLRQENAALLVCHINV 350 (387)
Q Consensus 335 ~L~~EN~~Lr~~L~~l 350 (387)
.|+....+|+.+|.+.
T Consensus 86 alq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 86 TLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 247
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=66.19 E-value=10 Score=32.38 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016555 327 NQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 327 ~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.++.+|.+.|..|+..|+.+-..
T Consensus 39 ~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 39 AELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555444433
No 248
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.05 E-value=59 Score=27.30 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
..++..+..|+.+...++.++.....++..|..
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555554444444444433
No 249
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=65.64 E-value=11 Score=37.83 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 300 RKQAEAEELSRKVDSLIDENA----------SLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~----------~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.-+.++++|+.+.+.+..+.. +|+.++..|++++..|+.+...|.++|..+
T Consensus 41 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 41 EIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444432 334445555555555555555555555544
No 250
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=65.58 E-value=2.7 Score=30.56 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+.+|..+|.--..||..|..-+.+|...+..|+.....|...|..+..
T Consensus 5 vaqlknrvayklkenaklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 5 VAQLKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 345555555555688888888888888888888888777777766543
No 251
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=65.32 E-value=12 Score=35.42 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+.|-.+|+.++.....|..++.++.+..+..+.....|.+.|++++..
T Consensus 2 e~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 2 ASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555544444455555555555555443
No 252
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=65.12 E-value=23 Score=33.61 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
..+|.+|..+++.|...-..+.++|..|+++=..|+.++..++++|..+..
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999999877643
No 253
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=65.07 E-value=62 Score=30.44 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred ccccccHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 272 ETWIQNERELKRERRKQSNRESA-RRSRLRKQAEAEELS---------RKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (387)
Q Consensus 272 e~~~~dE~e~KR~RRk~rNRESA-RRSR~RKq~~~eeLe---------~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~ 341 (387)
+...+.-.+-|-.=.-++|||.. +.+|.||+.-..++. .++..|++|......+....+.++..++. .
T Consensus 83 ~~~a~~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR--~ 160 (234)
T 3plt_A 83 DQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITR--E 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH--H
Q ss_pred HHHHHHHhhhhhhhhh
Q 016555 342 ALLVCHINVIIFWTVS 357 (387)
Q Consensus 342 ~Lr~~L~~l~~~~~~~ 357 (387)
.||+-+.-..+...+.
T Consensus 161 ~lKEa~~~~f~Al~E~ 176 (234)
T 3plt_A 161 KLKAAYSYMFDSLREL 176 (234)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 254
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=64.93 E-value=45 Score=26.41 Aligned_cols=46 Identities=28% Similarity=0.227 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 307 ELSRKVDSLIDENASLKSEIN-------QLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~-------~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+-.+|+.|-.||.+|.+--. .|..+.+.|..|+..|+.+|..+..
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345566666667766655333 3445566666777777766665543
No 255
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=64.89 E-value=29 Score=32.51 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
..+..++..|+...+.++.|.+.++.++++.+...++||++...+
T Consensus 174 ~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 174 SEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555555555555555555555555555554443
No 256
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=64.81 E-value=40 Score=29.47 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 312 VDSLIDENASLKSEIN-------QLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 312 V~~L~~EN~~L~~el~-------~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
|+.|..-.-.|+.+++ +.-..+++|..||..++++|..-.
T Consensus 114 Ve~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 114 VESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 4444444444444443 233346778899999999987543
No 257
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=64.79 E-value=51 Score=26.69 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
.+++.++..+..|+.+...++.++.....++..|..-...|-.+|
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EI 81 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEI 81 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666665555555544444444443
No 258
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=64.71 E-value=51 Score=34.43 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 292 ESARRSRLRKQAEAEELSRKVDSLID 317 (387)
Q Consensus 292 ESARRSR~RKq~~~eeLe~rV~~L~~ 317 (387)
|.|+|-=.|-++++++.+..++.++.
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~e 342 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQE 342 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666555555555555444444443
No 259
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=64.69 E-value=27 Score=43.81 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~ 341 (387)
+.+++.|+++.+.|+++++.+..|.+.|+.|.+
T Consensus 2034 ~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2034 VATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333333333
No 260
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.20 E-value=63 Score=27.00 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~ 333 (387)
+..|+.+...++.++.....++
T Consensus 84 i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 84 LAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 261
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=64.09 E-value=0.88 Score=38.24 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 318 ENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 318 EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+...|..++..|+.+.+.|..||..|+.++..+
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555444433
No 262
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=63.82 E-value=16 Score=36.91 Aligned_cols=43 Identities=16% Similarity=0.018 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
++..||..+...+.+...|+..+..++.+++.|+.+...|..+
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 263
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=63.73 E-value=7 Score=28.83 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 016555 329 LSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 329 L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.++++.|..||..|+++|..+
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544
No 264
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=63.72 E-value=9.9 Score=24.69 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEIN 327 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~ 327 (387)
+.|+.++..|+...+.|..+++
T Consensus 4 ealekkcaalesklqalekkle 25 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 265
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=63.41 E-value=35 Score=27.42 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
++-+.|..+|+.|+.|+..|+.++..|++
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666555543
No 266
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=63.21 E-value=18 Score=36.40 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 342 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~ 342 (387)
++.++|++++..|+.....-...|..|+..++.++.+..+
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqR 152 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKR 152 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544443333222333443333333333333
No 267
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=63.18 E-value=32 Score=25.67 Aligned_cols=24 Identities=21% Similarity=0.381 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
.|..+|..|++||..|+.-+++-+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEq 37 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQ 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665555433
No 268
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=63.05 E-value=46 Score=31.10 Aligned_cols=25 Identities=0% Similarity=-0.093 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 326 INQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 326 l~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
++..+.++..++++...++.+|+.+
T Consensus 116 ~~~a~~~~~~~~a~l~~~~a~l~~a 140 (341)
T 3fpp_A 116 LDNAATEMAVKQAQIGTIDAQIKRN 140 (341)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433
No 269
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=62.92 E-value=31 Score=29.79 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el 326 (387)
+|+...+.|+.++..++.+.
T Consensus 61 ~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 61 ALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 270
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=62.88 E-value=48 Score=26.14 Aligned_cols=49 Identities=14% Similarity=0.003 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.-+..+..|+.++..++.+.+....+.+.|-.-...|..|+...|.-|+
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 4456677778888888888877777877777777778888877776654
No 271
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=62.81 E-value=40 Score=26.76 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
|..+|+.++.|+..|+.++..|++ |..+...|.+-|+++
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~e----l~~~~~~laevl~~l 77 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAE----VAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 334444444444444444443322 333444444444443
No 272
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.07 E-value=68 Score=26.67 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 313 DSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
..++.+...|++.+..+.-....|+.+...|+++|..+
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666554444455666666666666554
No 273
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=61.84 E-value=72 Score=30.16 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 302 QAEAEELSRKVDSLIDEN----ASLKSE-INQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN----~~L~~e-l~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
.+++++++.+++.|..-. +.++++ ++..++.+..|+.|+..-+.+|.+.+.......
T Consensus 37 MkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH~qRV~a~ 98 (239)
T 3k66_A 37 MKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAM 98 (239)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 356788888888887755 234444 346777788888888888888887766544443
No 274
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=61.77 E-value=46 Score=27.25 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+.+.-|+.+|+.++..-..=|.--+++..+.+.|..+++.|+.++.
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~ 85 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444444444444444444444444444433
No 275
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=61.76 E-value=21 Score=33.13 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
+.|+.+++.|+.++.+|+.++.+|+.+++.+
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~ 92 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENF 92 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 276
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.71 E-value=7.2 Score=39.51 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+.+++.|+.|...|+.++.+++.++..|+.+...++++++.
T Consensus 31 ~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~ 71 (434)
T 4b4t_M 31 QTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKN 71 (434)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444444444444444443
No 277
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=61.48 E-value=44 Score=29.41 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=7.1
Q ss_pred cccccccccccccc
Q 016555 372 ECFCCNLLIGLTYR 385 (387)
Q Consensus 372 ~~f~~n~l~~~~y~ 385 (387)
.-.||.+.+|-.|.
T Consensus 117 vE~~v~V~vGDn~~ 130 (150)
T 4dci_A 117 LESSCEIKVGDNLV 130 (150)
T ss_dssp EEECCEECTTCBHH
T ss_pred eeEEEEEecCCCHH
Confidence 34455555555443
No 278
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=61.40 E-value=50 Score=24.95 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.+++.|+.....-...+...+.++..|+.....|..+|..+
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666666666666666666666666666666654
No 279
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=61.16 E-value=69 Score=26.44 Aligned_cols=45 Identities=20% Similarity=0.098 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
.++.|+.|...=..+|..|+..++.+..++..|..+|..+..+..
T Consensus 55 ~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~ 99 (107)
T 2no2_A 55 VLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERD 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554555566666677777777777777766555433
No 280
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=61.02 E-value=19 Score=25.46 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
+|.+++.++-.++++.+.+...|+.+|+++.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555666665555553
No 281
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=60.80 E-value=13 Score=29.52 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
...++.+...|++.+..+.-....|+.+...|+++|.-+
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666555666677777777776554
No 282
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=60.66 E-value=24 Score=28.91 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016555 328 QLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 328 ~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.|++++++|..|.+.|..+|..
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544
No 283
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=60.61 E-value=58 Score=26.55 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 322 LKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 322 L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+..+|.++..+++.|+.+...|...|.++.+
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666667777777777777777776644
No 284
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=59.84 E-value=22 Score=28.22 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 314 SLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.|+.....|..++..|..+...++.+...|+.+|.+.
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555666666666655543
No 285
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=59.65 E-value=16 Score=26.61 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 292 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 292 ESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el 326 (387)
|-|-|+=.|-+..+++||.++..-+.++..+..++
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555555555555554444444444443
No 286
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=59.52 E-value=19 Score=28.83 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
.+++.+...|+..|..|..++++|+
T Consensus 52 ~e~e~r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 52 KDLENRQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3344444444445555544444443
No 287
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=59.44 E-value=64 Score=25.51 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~ 328 (387)
+|..+++.|..+|..|..++..
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn 25 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDN 25 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444444443333
No 288
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=59.07 E-value=97 Score=32.52 Aligned_cols=6 Identities=33% Similarity=0.944 Sum_probs=2.9
Q ss_pred CCCCcC
Q 016555 60 QPYMWG 65 (387)
Q Consensus 60 hPymWg 65 (387)
.-|||+
T Consensus 77 gi~~~~ 82 (592)
T 1f5n_A 77 GIWMWC 82 (592)
T ss_dssp SEEEEE
T ss_pred EEEEee
Confidence 345554
No 289
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=58.96 E-value=77 Score=26.32 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=5.4
Q ss_pred cHHHHHHHHHHH
Q 016555 277 NERELKRERRKQ 288 (387)
Q Consensus 277 dE~e~KR~RRk~ 288 (387)
-+.+++..||++
T Consensus 18 ye~~I~~LR~qi 29 (119)
T 3ol1_A 18 YEEEMRELRRQV 29 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 290
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=58.86 E-value=68 Score=25.62 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 324 SEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 324 ~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.++..|+.++..|+.+...|..++..+.
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 291
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=58.66 E-value=76 Score=26.16 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.+...++.|.+++..-..|...|+..+..+......|...+..|..+...+
T Consensus 51 eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 51 EQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666555666666666666666666665555555554444
No 292
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=58.63 E-value=61 Score=33.40 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=14.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 323 KSE-INQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 323 ~~e-l~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.++ ...|++++..|+.+...|.++|..+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4555555555555555555555443
No 293
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=58.60 E-value=63 Score=25.16 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.||+++++|..-|..| +.++....+-+.+|+.++.-++..+..+.
T Consensus 14 ~Kq~EI~rLnvlvgsl-------R~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 14 EKQNEIFELKKIAETL-------RSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4555555555555443 34444444445555555555555554443
No 294
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=58.52 E-value=21 Score=24.12 Aligned_cols=27 Identities=7% Similarity=0.044 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+|..++++|-.+...|..|...|++-|
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 445556666666666666666665544
No 295
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=58.44 E-value=34 Score=28.37 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
++.|+.+++.|+.+...|+.++..+.++..++..
T Consensus 97 ~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 97 KNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555666666666666666666666666665543
No 296
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=58.29 E-value=44 Score=27.35 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 322 LKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 322 L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
|+.++..|.++++.|..+...-+
T Consensus 54 L~Rk~DKl~~ele~l~~~l~~~k 76 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEIQSEN 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 297
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=58.10 E-value=18 Score=28.08 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+.+++..+++.|+.|..-.-.++..+...|+..+.++..|..+|..
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ 62 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVD 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444445555555554444445555555555544455455555444
No 298
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=58.00 E-value=34 Score=30.39 Aligned_cols=8 Identities=50% Similarity=0.700 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 016555 301 KQAEAEEL 308 (387)
Q Consensus 301 Kq~~~eeL 308 (387)
|++++.+|
T Consensus 24 K~~~LqeL 31 (155)
T 2aze_A 24 KQSQLQEL 31 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 299
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=57.75 E-value=5.6 Score=33.57 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 326 INQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 326 l~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+++|..++.+|+.||..||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555566666666666653
No 300
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=57.62 E-value=76 Score=27.88 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 320 ASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 320 ~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
..|+..+..++.....++.+...|+.++..+
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~L 99 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQL 99 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence 3344444444444444444444444333333
No 301
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=57.48 E-value=80 Score=26.00 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+++.++...--+-|..|.+-...-+.+-..-+.+++.|+.|+..|..+|++....
T Consensus 35 ~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 35 LQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444343333444444443333322332233455777788888888888776643
No 302
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.40 E-value=16 Score=31.77 Aligned_cols=10 Identities=30% Similarity=0.215 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 016555 315 LIDENASLKS 324 (387)
Q Consensus 315 L~~EN~~L~~ 324 (387)
+..+...|..
T Consensus 44 ~~~e~~~L~~ 53 (135)
T 2e7s_A 44 RDDEVKRLRE 53 (135)
T ss_dssp HHHHHHTHHH
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 303
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=57.30 E-value=20 Score=30.65 Aligned_cols=40 Identities=5% Similarity=0.131 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
+.|++|++.|+.....|...+..+++++..++.....|..
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554444444444443
No 304
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=57.27 E-value=65 Score=25.54 Aligned_cols=52 Identities=8% Similarity=-0.009 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhhhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSEN------------SEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee------------~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
.+++|+.++...+.+...-++++....+. +..-+.+...|+.+|.++...++
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444444433222 22334455555555555544443
No 305
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=57.02 E-value=37 Score=30.41 Aligned_cols=18 Identities=11% Similarity=-0.086 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016555 332 NSEKLRQENAALLVCHIN 349 (387)
Q Consensus 332 e~~~L~~EN~~Lr~~L~~ 349 (387)
++.+|..|...|+.+|..
T Consensus 114 kI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 306
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=56.85 E-value=43 Score=30.97 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 298 RLRKQAEAEELSRKVDSLID-------ENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 298 R~RKq~~~eeLe~rV~~L~~-------EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
|.+|+--.+....+++.|+. .......+++..++++ +.-|..|+++|-.+..
T Consensus 139 R~~KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Y---e~lN~~L~eELP~l~~ 197 (243)
T 4a3a_A 139 RSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVF---EEFNVDLQEELPSLWS 197 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 55677777777777777762 1222333333333333 3446777777776654
No 307
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=56.84 E-value=27 Score=27.32 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.++.++..+++.|...-+-+..++..|.++=..|+.+...+..+|..+
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~ 68 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888888877777777777777776554
No 308
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=56.78 E-value=22 Score=30.38 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 322 LKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 322 L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
|..|+..+.+++.....|.+.|.++++.+.
T Consensus 97 L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 126 (132)
T 1ykh_B 97 LQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 126 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444555555555443
No 309
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=56.64 E-value=21 Score=31.29 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 320 ASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 320 ~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
..|..|+..+.+++.....|.+.|.++++.+....+..
T Consensus 95 ~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~ 132 (151)
T 1yke_B 95 DMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDG 132 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555666666666665544443
No 310
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=56.62 E-value=28 Score=23.23 Aligned_cols=30 Identities=23% Similarity=0.135 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.|+.++..|+++...|.-....|++++..+
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666777666543
No 311
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=56.57 E-value=5.7 Score=37.34 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=2.2
Q ss_pred HHHHHH
Q 016555 332 NSEKLR 337 (387)
Q Consensus 332 e~~~L~ 337 (387)
|+++|+
T Consensus 51 En~rLr 56 (255)
T 2j5u_A 51 ENKDLK 56 (255)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 312
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=56.37 E-value=54 Score=25.78 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
+.++.|+..++.|+..-+.|..++...+
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666665443
No 313
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=56.18 E-value=61 Score=27.04 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
+++.++..++..|..+...|+..+..|.++
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666554
No 314
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=56.05 E-value=1.2e+02 Score=28.13 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDS 314 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~ 314 (387)
++...+.-+.+..|+-|-+...++++.++.|..+...
T Consensus 99 ~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~r 135 (235)
T 2odv_A 99 EKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQM 135 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888889999999999998888888766553
No 315
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=55.90 E-value=22 Score=29.15 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=29.6
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhh
Q 016555 306 EELSRKVD-SLIDENASLKSEINQLSE--NSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 306 eeLe~rV~-~L~~EN~~L~~el~~L~e--e~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
.+|+.+|+ +|......|..++..|.. ..++|..+-..|...++.+....
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y 87 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSY 87 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666666 666666666666664444 55666666666666665554433
No 316
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=55.78 E-value=13 Score=33.06 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 315 LIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 315 L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
|+.|...++.+|+.-++++++|.
T Consensus 10 Le~Ek~~~~~rI~~K~~~LqeL~ 32 (155)
T 2aze_A 10 LEVERQRRLERIKQKQSQLQELI 32 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 317
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=55.69 E-value=34 Score=31.28 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 298 R~RKq~~~eeLe~rV~~L~~EN~~L~~el~~ 328 (387)
+.+|.+-++.|.+++..|+.|-..|..++..
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999999999888888777754
No 318
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=55.60 E-value=73 Score=25.02 Aligned_cols=35 Identities=6% Similarity=0.153 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 320 ASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 320 ~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
..|..+++.+..++..|..+...|..++.++...+
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666677777777777777776665433
No 319
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=55.13 E-value=10 Score=31.32 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 016555 329 LSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 329 L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
|+.+...|+.|...|+++|+.+.
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444454443
No 320
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=54.99 E-value=6.4 Score=29.19 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLK 323 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~ 323 (387)
+.++++|+.+|+.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888776665553
No 321
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=54.55 E-value=30 Score=22.80 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~e 331 (387)
||..+..|..-.++|.+++.+|.+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554443
No 322
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=54.50 E-value=64 Score=27.21 Aligned_cols=16 Identities=6% Similarity=-0.053 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 016555 335 KLRQENAALLVCHINV 350 (387)
Q Consensus 335 ~L~~EN~~Lr~~L~~l 350 (387)
.|+.....|+.+|...
T Consensus 73 ~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 73 SIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 323
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=54.26 E-value=6.4 Score=25.05 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016555 311 KVDSLIDENASLKSEINQL 329 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L 329 (387)
+-+.|++....|++++..|
T Consensus 8 endaleqkiaalkqkiasl 26 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 3333444444444444333
No 324
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=53.74 E-value=72 Score=26.20 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 016555 336 LRQENAALLVCHINVI 351 (387)
Q Consensus 336 L~~EN~~Lr~~L~~l~ 351 (387)
|+.....|+.+|...+
T Consensus 57 lq~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 57 LETKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 325
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=53.62 E-value=1.1e+02 Score=26.49 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 280 ELKRERRKQSNRESARRSRLRKQ---------------AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 280 e~KR~RRk~rNRESARRSR~RKq---------------~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
+..|.++.+-||.-+---|..-. ...++..+++..++.+......++.....++..|+.+...+-
T Consensus 35 E~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~ 114 (147)
T 2b9c_A 35 ESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVT 114 (147)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777666554322 122334444555555555555555555555555555555555
Q ss_pred HHHHhh
Q 016555 345 VCHINV 350 (387)
Q Consensus 345 ~~L~~l 350 (387)
..|+.+
T Consensus 115 ~nlKsL 120 (147)
T 2b9c_A 115 NNLKSL 120 (147)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555544
No 326
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=53.13 E-value=1e+02 Score=26.06 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=10.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 289 SNRESARRSRLRKQAEAEELSRKVDSLI 316 (387)
Q Consensus 289 rNRESARRSR~RKq~~~eeLe~rV~~L~ 316 (387)
.++|+|++-=...++..+.++.+++.++
T Consensus 34 a~AE~A~~~La~~~~l~~~i~er~~~i~ 61 (119)
T 3etw_A 34 AQADAARQALAQNEQVYNELSQRAQRLQ 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333333333443333
No 327
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.42 E-value=30 Score=24.43 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
++|-++++..-+|.+.-+++|..|+.+...|+.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666777776666655543
No 328
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=52.39 E-value=25 Score=22.82 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 016555 328 QLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 328 ~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.|.++|..|++....|..+|+.+
T Consensus 5 alekkcaalesklqalekkleal 27 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555444
No 329
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=52.26 E-value=1e+02 Score=25.60 Aligned_cols=37 Identities=19% Similarity=0.071 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 016555 314 SLIDENASLKSEINQLSEN-------SEKLRQENAALLVCHINV 350 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee-------~~~L~~EN~~Lr~~L~~l 350 (387)
.|+.-+.+|.+.|..|.++ ...-.-|+..|+.++.++
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 3444444555555444443 333345566666666655
No 330
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=52.05 E-value=27 Score=28.00 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
-+|+..|+.+++.+..+.. +...|+..|..|..+|+++.
T Consensus 38 vdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHH
Confidence 4676666665554443322 23446677777777777664
No 331
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.62 E-value=12 Score=28.94 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016555 326 INQLSENSEKLRQENAALL 344 (387)
Q Consensus 326 l~~L~ee~~~L~~EN~~Lr 344 (387)
|..|++++..|..|+..|+
T Consensus 59 I~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 332
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.43 E-value=91 Score=24.84 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
++.++.+...|..++..|+.+...|..+...|+.++.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666677777777777777777777777766
No 333
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=51.35 E-value=17 Score=22.89 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEIN 327 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~ 327 (387)
|..+|-+|+.|...|+.++.
T Consensus 5 lkdevgelkgevralkdevk 24 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHh
Confidence 33444444444444444433
No 334
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=51.03 E-value=36 Score=31.83 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLI---DENASLKSEINQLSEN 332 (387)
Q Consensus 304 ~~eeLe~rV~~L~---~EN~~L~~el~~L~ee 332 (387)
++.+||.++..|. .+|..+..++..|...
T Consensus 80 r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~ 111 (252)
T 3e98_A 80 RNIEMRHRLSQLMDVARENDRLFDKTRRLVLD 111 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333 3555555555555443
No 335
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=50.70 E-value=51 Score=24.62 Aligned_cols=13 Identities=15% Similarity=-0.087 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 016555 336 LRQENAALLVCHI 348 (387)
Q Consensus 336 L~~EN~~Lr~~L~ 348 (387)
++.|...|.++|+
T Consensus 53 veeevkkleeeik 65 (67)
T 1lq7_A 53 VEEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3445555555544
No 336
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=50.20 E-value=20 Score=36.05 Aligned_cols=23 Identities=17% Similarity=-0.055 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 016555 333 SEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 333 ~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
...|..+...|.+++.++..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEELK 99 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 337
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=50.15 E-value=43 Score=32.17 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 298 R~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.--..++.+|..++..++.+-.++.+.++++.+.+..|+.|..+++.-|+-.
T Consensus 211 n~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (268)
T 2yo3_A 211 NTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIKLH 263 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455678888888888888888888888888888888888888887655543
No 338
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=50.00 E-value=2.1e+02 Score=29.88 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+++.++..++.-|+.|+.....+..+.+..+.....++.|-..|+.+|
T Consensus 360 dArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~ 407 (602)
T 1cii_A 360 DARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQL 407 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555444444444444444444444444444444333
No 339
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=49.75 E-value=3.1 Score=32.09 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 320 ASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 320 ~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+.|+.++..|+=++..|...|.+|+.+|+
T Consensus 51 qalkkklaqlkwklqalkkknaqlkkklq 79 (80)
T 2lq4_p 51 QALKKKLAQLKWKLQALKKKNAQLKKKLQ 79 (80)
T ss_dssp TTTHHHHHTTHHHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 35677777777777788888888887775
No 340
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.65 E-value=47 Score=26.07 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENAS------LKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~------L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.|+.|+.++..|+.+... =..++..|..++..+..+...+-++-..|
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888877643 12466667777777777776666554443
No 341
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=49.61 E-value=25 Score=33.93 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
.++++.|+.+.+.|+.|.++|+.++..+++.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4578888888888888888888877777664
No 342
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.59 E-value=17 Score=36.50 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.+++++.++..+......|..+...|. .+...|+++|+.+
T Consensus 25 ~~i~~~~~~~~~~~~~~~~l~~~~~~l~-------~~~~~~~~e~~~l 65 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVRRLEAQRNALN-------DKVRFIKDELRLL 65 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 3445555555555444444444444444 4444445554443
No 343
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=49.33 E-value=9.7 Score=37.34 Aligned_cols=41 Identities=15% Similarity=-0.044 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+..|+.....+..++..|+..++.|+.+...|+++|.++..
T Consensus 6 ~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 6 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555544433
No 344
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=49.14 E-value=58 Score=33.83 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
+.+++.+-+.+++||..++++....+..+
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Y 64 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADY 64 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666665555554443
No 345
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=48.96 E-value=1.3e+02 Score=25.84 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCccceecccccccccc
Q 016555 364 NRSCVFVCECFCCNLLI 380 (387)
Q Consensus 364 ~~~~~~~~~~f~~n~l~ 380 (387)
.++|....-++-|++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~ 145 (151)
T 2pih_A 129 ETGSKVKHSNNSCSLLE 145 (151)
T ss_dssp -----------------
T ss_pred cCCCCCCCCCCcchHHH
Confidence 34444333345555553
No 346
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=48.95 E-value=95 Score=24.92 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~e 331 (387)
+.|+.+++.|+.+...|.+++..++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544
No 347
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=48.80 E-value=58 Score=34.47 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
++..+..|+.+...++.+++.++.+.++|+.....++++|.+..
T Consensus 350 i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~ 393 (695)
T 2j69_A 350 VARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTR 393 (695)
T ss_dssp HHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555554443
No 348
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.68 E-value=17 Score=36.76 Aligned_cols=16 Identities=6% Similarity=-0.222 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 016555 335 KLRQENAALLVCHINV 350 (387)
Q Consensus 335 ~L~~EN~~Lr~~L~~l 350 (387)
.|+.+...++++|+.+
T Consensus 83 ~l~~~~~~~~~~~~~l 98 (437)
T 4b4t_L 83 DLEKLYDKTENDIKAL 98 (437)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333334444444443
No 349
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=48.40 E-value=1.1e+02 Score=25.72 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
.+.|+.....|.+++..|++..+.|......+..
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333333
No 350
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=48.36 E-value=62 Score=29.03 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
|+..+.....+|..|..++..|+-++..|...-+.....|.
T Consensus 115 L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~ 155 (170)
T 3l4q_C 115 LEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLT 155 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555554444444444444443
No 351
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=47.86 E-value=72 Score=25.97 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKL----RQENAALLVCHINV 350 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L----~~EN~~Lr~~L~~l 350 (387)
+.+.++..--.|.+.++..|-.|.....++ +.|+..||.+|+..
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444444444455555555554443333 45677777777653
No 352
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=47.70 E-value=1.2e+02 Score=25.13 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 016555 314 SLIDENASLKSEINQLSEN-------SEKLRQENAALLVCHINV 350 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee-------~~~L~~EN~~Lr~~L~~l 350 (387)
.|+.-+.+|.+.|..|.++ ...-.-|+..|+.++.++
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444455544444443 333344555555555554
No 353
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=47.64 E-value=37 Score=32.44 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 319 NASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 319 N~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
...|..++..|.++..+|+.+...|+++
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3334444444444444444444444444
No 354
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=47.62 E-value=1.1e+02 Score=24.69 Aligned_cols=79 Identities=6% Similarity=-0.018 Sum_probs=39.8
Q ss_pred ccccccHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 016555 272 ETWIQNERELKRERRKQSNRESARR---SRLRKQAEAEELSRKVDSLIDENASLKSEINQLS-ENSEKLRQENAALLVCH 347 (387)
Q Consensus 272 e~~~~dE~e~KR~RRk~rNRESARR---SR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~-ee~~~L~~EN~~Lr~~L 347 (387)
+++..-|.+-+....-+..+.+.-. ....|++.+.+++..+++.+.-..++.-|+..+- .....+....+..|.+|
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL 94 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDL 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444444321 2255566677777777776666666666665442 11223334444444444
Q ss_pred Hhh
Q 016555 348 INV 350 (387)
Q Consensus 348 ~~l 350 (387)
..+
T Consensus 95 ~~l 97 (102)
T 2qyw_A 95 AKL 97 (102)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 355
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=47.54 E-value=12 Score=32.24 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 320 ASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 320 ~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+|..+++.|.+++..|+.|+..|+.++....
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888888888887766543
No 356
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.43 E-value=41 Score=31.71 Aligned_cols=33 Identities=15% Similarity=0.024 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 316 IDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 316 ~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+.+...++.++..++.++..++.+...++.+|.
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444555555555555555555554443
No 357
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=47.42 E-value=57 Score=23.73 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 299 LRKQAEAEELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~~L~~EN~~L~~el 326 (387)
+||.+-+++ +..|+.+...|+.++
T Consensus 6 rrr~e~ld~----l~~LEkqF~~LkEql 29 (49)
T 2xus_A 6 RRRSECVSE----MLDLEKQFSELKEKL 29 (49)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 355555555 345666666666554
No 358
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=47.26 E-value=15 Score=38.50 Aligned_cols=26 Identities=8% Similarity=0.208 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
..+|+.++.+++.+......++.+.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQ 362 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45566666666666655555554433
No 359
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=46.61 E-value=28 Score=26.85 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016555 309 SRKVDSLIDENASLKSEINQL 329 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L 329 (387)
+.++..|+.++..-..+|..|
T Consensus 24 de~I~eLE~~L~~kd~eI~eL 44 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333333333
No 360
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=46.33 E-value=1.3e+02 Score=30.92 Aligned_cols=16 Identities=13% Similarity=-0.180 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhhhh
Q 016555 337 RQENAALLVCHINVII 352 (387)
Q Consensus 337 ~~EN~~Lr~~L~~l~~ 352 (387)
+.....|+.+|..+..
T Consensus 174 ~~~~~~l~~ki~~l~~ 189 (464)
T 1m1j_B 174 RAVIDSLHKKIQKLEN 189 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 361
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=46.33 E-value=1.7e+02 Score=30.30 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASL 322 (387)
Q Consensus 308 Le~rV~~L~~EN~~L 322 (387)
++++-+.++++|...
T Consensus 46 i~aeNeaikkrNa~a 60 (497)
T 3iox_A 46 LTAENTAIKKRNADA 60 (497)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 362
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=46.02 E-value=86 Score=28.29 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
.+..|+.+++.|+.++..++.+...+.+++++...|
T Consensus 136 tV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~e 171 (175)
T 3mud_A 136 TTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLE 171 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554444433
No 363
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=45.95 E-value=20 Score=36.30 Aligned_cols=38 Identities=16% Similarity=-0.073 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 316 IDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 316 ~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+.-+......|..|+..+.........|++.+.++...
T Consensus 97 ~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 97 EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444445544555555555555555555443
No 364
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=45.93 E-value=59 Score=31.98 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSE 325 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~e 325 (387)
+++++|+.+++.|+.+...|..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKD 269 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555433
No 365
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=45.81 E-value=36 Score=30.99 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
.+...-.++..|+++|..|.+|.++|.++
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555555443
No 366
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=45.67 E-value=29 Score=33.92 Aligned_cols=14 Identities=7% Similarity=0.283 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 016555 327 NQLSENSEKLRQEN 340 (387)
Q Consensus 327 ~~L~ee~~~L~~EN 340 (387)
+.|++++.+|+.+.
T Consensus 38 e~L~~KI~~LE~~v 51 (323)
T 1lwu_B 38 EHLRAKMQRMEEAI 51 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 367
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=45.38 E-value=15 Score=30.34 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSE 331 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~e 331 (387)
.++|+.+...|+.++..|++
T Consensus 9 ~~~l~~~~~~l~~~i~~lke 28 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLEN 28 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 368
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=45.35 E-value=70 Score=30.45 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSEN 332 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee 332 (387)
+.+.+|+.+++.|+.+...+..++..+.++
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555444
No 369
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=45.13 E-value=59 Score=25.43 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~L 343 (387)
.++..|+..+..--..-..|-.++-.|.-|+.-|......|
T Consensus 32 ~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 32 QEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 34444444433333333334444444444444444333333
No 370
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=45.09 E-value=1.4e+02 Score=25.16 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
-|+.+++.|+++..+|...+..|...++.+
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 371
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.03 E-value=21 Score=36.09 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 318 ENASLKSEINQLSENSEKLRQENAALL 344 (387)
Q Consensus 318 EN~~L~~el~~L~ee~~~L~~EN~~Lr 344 (387)
+...++.++..|+++...++.|+..|+
T Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 73 QLKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444455555555555555544
No 372
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=44.98 E-value=65 Score=22.48 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASL 322 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L 322 (387)
+|..-++.|+..|.+|
T Consensus 7 elknyiqeleernael 22 (46)
T 3he4_B 7 ELKNYIQELEERNAEL 22 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3333444444444443
No 373
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=44.95 E-value=83 Score=22.51 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEIN 327 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~ 327 (387)
++.|+..++.|+..-+.|..++.
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 374
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=44.81 E-value=88 Score=23.71 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 313 DSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
=.|+.|.++|+++...+++-++.....+..|..-+..+
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~ 47 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333344444434333
No 375
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=43.85 E-value=2e+02 Score=27.13 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEIN 327 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~ 327 (387)
....++..+|...-.+...++.++.
T Consensus 351 ~~~~~~~~~v~~a~~~~~~~~~~~~ 375 (446)
T 3pik_A 351 QKIQNAFKEVADALALRQSLNDQIS 375 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333333
No 376
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=43.72 E-value=43 Score=30.11 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
-+.|...-..|+..+..|.++...|..+...|++
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555
No 377
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=43.63 E-value=36 Score=29.98 Aligned_cols=33 Identities=6% Similarity=-0.025 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
..||+++..|+.....+..+|..|+++.+.|+.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666666666666666666666555555443
No 378
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=43.59 E-value=1.2e+02 Score=23.92 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
..|..+...|..+.......+..|......|..+...|.++|
T Consensus 45 ~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 45 VTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444555555555555555555555444
No 379
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=43.57 E-value=14 Score=30.48 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 016555 299 LRKQAEAEELSRKVDSLI---DENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~~L~---~EN~~L~~el~~L~ee~~~L~~ 338 (387)
..|+..|++|..++..++ ..+..|+.++...+..+..-|+
T Consensus 34 ~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERa 76 (96)
T 3fx0_A 34 VAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQ 76 (96)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665555 3444455555555554444333
No 380
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=43.29 E-value=1.2e+02 Score=23.69 Aligned_cols=47 Identities=26% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.+|..++..-+.|...|..-+..|+.++.+...-|..|..++.-...
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~ 52 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56778888888888888888888888888888778888777755443
No 381
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.09 E-value=1.7e+02 Score=25.71 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 320 ASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 320 ~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
..+..++..|+++....+.-...|..+|..+
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 382
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=42.97 E-value=85 Score=25.73 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVI 351 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~ 351 (387)
.+|+.+++.|+.+...|.. ++.+...|+.+-..|..+|..+.
T Consensus 50 ~eL~~EI~~L~~eI~~LE~----iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEK----MQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444332 23334445555555555555543
No 383
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=42.93 E-value=32 Score=22.62 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 314 SLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
.|+.+...|..-++.|++..++|+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544444443
No 384
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=42.67 E-value=1.2e+02 Score=24.16 Aligned_cols=20 Identities=0% Similarity=-0.059 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHH-HHHHHHhh
Q 016555 331 ENSEKLRQENAA-LLVCHINV 350 (387)
Q Consensus 331 ee~~~L~~EN~~-Lr~~L~~l 350 (387)
.++...+.+... |+.+|+.+
T Consensus 72 ~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 72 AKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555 55555544
No 385
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=42.36 E-value=39 Score=30.78 Aligned_cols=27 Identities=22% Similarity=0.110 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el 326 (387)
.-...+.+|+++...|+.||+.|..+-
T Consensus 158 ~~L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 158 YCLDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677888888888888888887764
No 386
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=42.32 E-value=46 Score=28.15 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEIN 327 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~ 327 (387)
+++.+|+.+|+.++..++.|++-..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~ 28 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQ 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655555555544433
No 387
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=42.23 E-value=38 Score=22.23 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 326 INQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 326 l~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
++.|+...+.|.+.|-.-+++++.+.+
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444455555666666666666554
No 388
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=42.02 E-value=77 Score=31.09 Aligned_cols=17 Identities=18% Similarity=0.250 Sum_probs=9.6
Q ss_pred cccCCCccceec--ccccc
Q 016555 360 SNEANRSCVFVC--ECFCC 376 (387)
Q Consensus 360 ~~~~~~~~~~~~--~~f~~ 376 (387)
...+-..|.+.. |||..
T Consensus 422 ~~~~~~~~~~~~~~~~~~~ 440 (463)
T 2xz3_A 422 RLGFQSLCPTINEPCCFLR 440 (463)
T ss_dssp HTTSCCHHHHHTCCCCCCC
T ss_pred HhCcCccchhhcCCceEEe
Confidence 333346677754 66665
No 389
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=41.98 E-value=16 Score=31.57 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
..|-.+++.|.++.++|.+++.+|+
T Consensus 101 ~~~laqLe~ls~qL~~ls~~v~~L~ 125 (140)
T 3iyn_Q 101 TALLAQLDSLTRELNVVSQQLLDLR 125 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 390
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=41.94 E-value=22 Score=29.21 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016555 327 NQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 327 ~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
..|++++++|..|.+.|+.+|..
T Consensus 59 AKL~Rk~DKl~~ele~l~~~L~s 81 (94)
T 3vlc_E 59 TKNNRKLDSLDKEINNLKDEIQS 81 (94)
T ss_dssp HHHHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555543
No 391
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=41.93 E-value=67 Score=27.73 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhh
Q 016555 313 DSLIDENASLKSEINQLSEN-------SEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee-------~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
+.|+.-+.+|.+.|..|.++ ...-.-|+..|+.++.++.+..
T Consensus 61 ~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKf 109 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKF 109 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHccc
Confidence 34444444454544444433 3333456677777777765543
No 392
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=41.88 E-value=46 Score=22.50 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 324 SEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 324 ~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
++-..|..+.+.|+..+..|+.+|+.
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444445555555666666554
No 393
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=41.75 E-value=98 Score=24.94 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhh
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQ--------LSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~--------L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
.|++.+.+.+..+++.+.-..+|.-|+.. +..++...+.+...|+.+|+.+
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666555555555555444432 3334444444555555555443
No 394
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=41.58 E-value=81 Score=25.97 Aligned_cols=16 Identities=6% Similarity=-0.342 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhhhhh
Q 016555 340 NAALLVCHINVIIFWT 355 (387)
Q Consensus 340 N~~Lr~~L~~l~~~~~ 355 (387)
...|..+|+.+...+.
T Consensus 69 v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 69 IKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444333333
No 395
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=41.33 E-value=2.6e+02 Score=29.32 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKS 324 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~ 324 (387)
++.+-..++....+|..
T Consensus 517 ~~~~~~~~~e~~~ql~~ 533 (592)
T 1f5n_A 517 MEQKERSYQEHLKQLTE 533 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 396
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=41.05 E-value=98 Score=23.70 Aligned_cols=22 Identities=14% Similarity=-0.232 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 016555 332 NSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 332 e~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
++.+|+.....|.++|+.+...
T Consensus 33 KWaKL~Rk~DKl~~ele~l~~~ 54 (65)
T 3sja_C 33 KWTKNNRKLDSLDKEINNLKDE 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665443
No 397
>3duz_A GP67, major envelope glycoprotein; fusion protein, coiled-coil, fusion peptide, trimer, viral, lipoprotein; 2.95A {Autographa californica nuclearpolyhedrosis virus}
Probab=40.75 E-value=69 Score=32.70 Aligned_cols=63 Identities=24% Similarity=0.210 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccC
Q 016555 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSLFSNEA 363 (387)
Q Consensus 301 Kq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~ 363 (387)
|-+-+++|..-++.|.-||+.|+--+..|.+++.+|..-...|-.-|..+-.++.-.++.+-.
T Consensus 275 ~aAs~~Dl~~I~~~lm~e~~~lr~Nl~~L~~~~n~l~~~l~~vI~SVaKIDeRLIGrLmg~~v 337 (487)
T 3duz_A 275 DTATKGDLMHIQEELMYENDLLKMNIELMHAHINKLNNMLHDLIVSVAKVDERLIGNLMNNSV 337 (487)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHTTSCE
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc
Confidence 346688999999999999999999999999999888888888887777766666666655543
No 398
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=40.62 E-value=16 Score=27.78 Aligned_cols=59 Identities=24% Similarity=0.246 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Q 016555 289 SNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS----ENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 289 rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~----ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.|.+|-+.|+.- +..-+.++..++.|......+++..+ -+.+.|+.|-..++++|+..
T Consensus 8 kqrlaaiktrlqa---lggseaelaafekeiaafeselqaykgkgnpevealrkeaaairdelqay 70 (73)
T 2a3d_A 8 KQRLAAIKTRLQA---LGGSEAELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAY 70 (73)
T ss_dssp HHHHHHHHHHHHH---CSSGGGTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHh
Confidence 3566666655432 22333445555555555555555442 24567778888888888754
No 399
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=40.40 E-value=1.9e+02 Score=25.40 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENAS 321 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~ 321 (387)
+.++.++..|+.....
T Consensus 73 d~yEeqIk~L~~kLKE 88 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKE 88 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 400
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=40.17 E-value=36 Score=24.05 Aligned_cols=8 Identities=13% Similarity=-0.039 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 016555 340 NAALLVCH 347 (387)
Q Consensus 340 N~~Lr~~L 347 (387)
...|.+.|
T Consensus 32 Ld~L~~~l 39 (43)
T 2pnv_A 32 LETLIGSI 39 (43)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 401
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=40.13 E-value=1.7e+02 Score=24.60 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+..+.+.-..+.+.|..++..-...+..|+.....++..+.....
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~ 80 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMA 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444444554444444444444333
No 402
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=40.01 E-value=1.1e+02 Score=22.72 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
.-+.+|+.++..++.-...|..+++.+.-+.+.+..+
T Consensus 6 ~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq 42 (65)
T 3m0d_C 6 KLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQ 42 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455566666665555555555555554444444333
No 403
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=40.00 E-value=1.9e+02 Score=25.24 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 016555 290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI------------NQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 290 NRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el------------~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
||-.--.++.+=-.+.+.|-.+|+.|+.-...||..+ ..+.+++..+..+...|.+-|.
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666677777777777666666543 3444555555555555444443
No 404
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.90 E-value=41 Score=33.80 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 309 SRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 309 e~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
++.+..|+.+...|..++..+++++
T Consensus 38 ~~~~~~l~~~~~~l~~~~~~~~~e~ 62 (405)
T 4b4t_J 38 TENVRRLEAQRNALNDKVRFIKDEL 62 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666666655544
No 405
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=39.88 E-value=54 Score=30.87 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
++++|.++..|+....++.+..+....+...++...+.|...++
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iR 51 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVK 51 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555555555555555555555555555554555544443
No 406
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=39.87 E-value=54 Score=26.09 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
++.+|...|+.|+.|..-.-.+|..+.--|+....++..|..+|.
T Consensus 9 ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~ 53 (82)
T 3tq7_B 9 QLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGII 53 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 345555555555555555444444444444433333333444443
No 407
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=39.74 E-value=92 Score=25.58 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
.++-.+|..++..-+.+...-+..+..|++.+..|+.|
T Consensus 56 lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqE 93 (98)
T 4fm3_A 56 LAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQ 93 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544444443
No 408
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=39.44 E-value=43 Score=27.89 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 016555 306 EELSRKVDSLI 316 (387)
Q Consensus 306 eeLe~rV~~L~ 316 (387)
+.|..+++.|+
T Consensus 99 ~~L~~~i~~Le 109 (117)
T 3kin_B 99 KALKSVIQHLE 109 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 409
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=39.29 E-value=68 Score=26.41 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
.|+.+++.|+.+-+.|-..+..+++.+..|.
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444333333
No 410
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=38.99 E-value=1.5e+02 Score=26.64 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ 330 (387)
+|+.--+.++.-|..|+.++..|.
T Consensus 187 el~~ak~~ye~ln~~L~~eLp~l~ 210 (251)
T 2fic_A 187 ELIKAQKVFEEMNVDLQEELPSLW 210 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556667777776663
No 411
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=38.98 E-value=1.3e+02 Score=27.35 Aligned_cols=50 Identities=22% Similarity=0.119 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
-..-|+.+.+.|..|-..|..++..++++...+..+-...........+.
T Consensus 32 G~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~ 81 (217)
T 3aon_A 32 GHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEE 81 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcH
Confidence 34567777777777777777777777777777666655555555544443
No 412
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=38.50 E-value=83 Score=26.11 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 321 SLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 321 ~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+|+..+.+|=+.+..|+.|--.|..++..
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~k 74 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKR 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 45555555555555555555555544433
No 413
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB: 2rfu_B* 3bt6_B*
Probab=37.92 E-value=81 Score=28.23 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccee---cccccccc
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSEN---SEKLRQENAALLVCHINVIIFWTVSLFSNEANRSCVFV---CECFCCNL 378 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee---~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~~~~~~~~---~~~f~~n~ 378 (387)
+..|..+|+....+.=....|+-.|-+. ++.-.++...|-++++.+..+.++.. ...|..+ ||..|+.+
T Consensus 77 I~~l~~~vdD~~~DvwsynaELlVlleNq~tid~~Ds~~~~L~ekvk~~Lr~nA~d~-----GnGCFe~~HKCd~~Cmes 151 (176)
T 2rft_B 77 ILELDEKVDDLRADTISSQIELAVLLSNEGIINSEDEHLLALERKLKKMLGPSAVDI-----GNGCFETKHKCNQTCLDR 151 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEC-----SSSEEECSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHhhhHhh-----CCchhhhHhhccHHHHHH
Confidence 3444555544444443333444333222 23334666777777777766555443 4455543 45556655
Q ss_pred cccccc
Q 016555 379 LIGLTY 384 (387)
Q Consensus 379 l~~~~y 384 (387)
.--.||
T Consensus 152 IrNgTY 157 (176)
T 2rft_B 152 IAAGTF 157 (176)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 555554
No 414
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=37.84 E-value=1.4e+02 Score=25.47 Aligned_cols=48 Identities=4% Similarity=-0.044 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVII 352 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+..++.++..|..+...|..+-+++...+..-...+..|-++|+...+
T Consensus 52 LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~td 99 (123)
T 4aj5_K 52 LSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTD 99 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444444444444444444444444444444555555555555433
No 415
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=37.35 E-value=1.7e+02 Score=23.91 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 296 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (387)
Q Consensus 296 RSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~ 334 (387)
-||.-=-.+.++|+.-+..|+.||..-...|..|+.+++
T Consensus 18 ~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akid 56 (101)
T 1d7m_A 18 VSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333334456666667777777666666666555443
No 416
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=37.35 E-value=1.7e+02 Score=24.29 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
+++...++++++-..|-.++..+++.|-.++--|+.|...|+.-++
T Consensus 62 aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 62 ARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555666665554443
No 417
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=37.26 E-value=26 Score=28.77 Aligned_cols=20 Identities=15% Similarity=-0.203 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 016555 333 SEKLRQENAALLVCHINVII 352 (387)
Q Consensus 333 ~~~L~~EN~~Lr~~L~~l~~ 352 (387)
+.+|+...+.|.++|+.+..
T Consensus 58 WAKL~Rk~DKl~~ele~l~~ 77 (94)
T 3vlc_E 58 WTKNNRKLDSLDKEINNLKD 77 (94)
T ss_dssp HHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444
No 418
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=37.12 E-value=55 Score=26.73 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
+++.+|++.+.+|..--..|...+..=.+..+.++.-...-...++.-..+
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~e 71 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 71 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666555555444444444433333344443333333333333333
No 419
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=37.11 E-value=89 Score=26.52 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
++.|+.+++.|+.....|+.++..+.....+|.
T Consensus 107 i~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 107 LKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666665555554
No 420
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=36.87 E-value=1.7e+02 Score=28.58 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENAS 321 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~ 321 (387)
++.|+.+.+.+...-..
T Consensus 226 le~L~~ere~~~e~~a~ 242 (302)
T 3ibp_A 226 IESLHAEREVLSERFAT 242 (302)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 421
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=36.72 E-value=1.2e+02 Score=23.88 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 312 V~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
+++|+..--...++|..|..++...+.++..+.+.|.+...++
T Consensus 32 ~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~EL 74 (77)
T 3mtu_E 32 LQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
No 422
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=36.68 E-value=69 Score=24.72 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.+|..+|..|+....... ++.+|+.+...|+.|...|..+..
T Consensus 27 ~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~ 68 (76)
T 1zhc_A 27 NQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYR 68 (76)
T ss_dssp HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445555555544332222 555665555555555555544433
No 423
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=36.55 E-value=91 Score=28.01 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~ 341 (387)
+|......|+.+...|..+...|..+++.|+.+..
T Consensus 53 ~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 53 IIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555554333
No 424
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=36.43 E-value=1.4e+02 Score=32.02 Aligned_cols=28 Identities=36% Similarity=0.345 Sum_probs=14.7
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 016555 292 ESARRSRLR---KQAEAEELSRKVDSLIDEN 319 (387)
Q Consensus 292 ESARRSR~R---Kq~~~eeLe~rV~~L~~EN 319 (387)
+++.+.|.+ +-..+++|++++..|+.|.
T Consensus 387 ea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~ 417 (854)
T 1qvr_A 387 EAAARLRMALESAPEEIDALERKKLQLEIER 417 (854)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence 344444443 3455666666666555543
No 425
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=36.28 E-value=1.4e+02 Score=22.62 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
+.+|-+=-..|..|...|..++..|+.++..|+
T Consensus 29 iQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 29 VQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 344444444555555566666666666665554
No 426
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=36.26 E-value=7.5 Score=31.94 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 313 DSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
..+..|.-.|+.++..|..++..++.||+.||+--
T Consensus 39 ~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~q 73 (95)
T 3n7n_E 39 KKVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQ 73 (95)
T ss_dssp -----------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777777777777543
No 427
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=36.24 E-value=2e+02 Score=24.76 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016555 330 SENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 330 ~ee~~~L~~EN~~Lr~~L~~ 349 (387)
+++...++.....|..+|..
T Consensus 52 k~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 52 KKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33334444444555554443
No 428
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=36.19 E-value=96 Score=27.99 Aligned_cols=21 Identities=5% Similarity=-0.045 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016555 327 NQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 327 ~~L~ee~~~L~~EN~~Lr~~L 347 (387)
..++.+++.++++...++.+|
T Consensus 108 ~~a~a~l~~a~a~l~~a~~~l 128 (277)
T 2f1m_A 108 QQANAAVTAAKAAVETARINL 128 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333334444444433
No 429
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=36.02 E-value=1.2e+02 Score=27.41 Aligned_cols=15 Identities=47% Similarity=0.716 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 016555 299 LRKQAEAEELSRKVD 313 (387)
Q Consensus 299 ~RKq~~~eeLe~rV~ 313 (387)
+|-+++++.+.+|.+
T Consensus 63 lR~~Ae~eN~rkR~~ 77 (197)
T 1dkg_A 63 LRVKAEMENLRRRTE 77 (197)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555444
No 430
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=35.91 E-value=84 Score=29.15 Aligned_cols=55 Identities=24% Similarity=0.210 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
.+++++++.+++.|... .-+.-++..++.+..|+.|+..-+.+|.+.+.......
T Consensus 42 mkEW~eae~q~k~l~ka--dkk~~~~rFQ~~v~aLE~E~~~ErqqL~etH~qRV~a~ 96 (211)
T 3umh_A 42 MREWEEAERQAKNLPKA--DKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAM 96 (211)
T ss_dssp HHHHHHHHHTTSSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 35667777776666442 22233455666777788888877777777655444333
No 431
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=35.69 E-value=60 Score=26.71 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016555 311 KVDSLIDENASLKSEINQLS 330 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L~ 330 (387)
++..|++|...|..+-+.|-
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD 26 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLD 26 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333
No 432
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=35.57 E-value=1.4e+02 Score=22.55 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
.|.-+|..|+.++..++.-++.-+.....|+.-...+..+
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~ 50 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667788888888888887777766666666655555444
No 433
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=35.42 E-value=1.8e+02 Score=23.60 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQ------------LSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~------------L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
+.+.+|+.+++.....-..|..-+.. +..++..+..+...|+.+|..+..-+
T Consensus 22 ~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L 85 (98)
T 2ke4_A 22 QQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWL 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444443332 23345555566666666665554433
No 434
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=35.34 E-value=1.6e+02 Score=22.93 Aligned_cols=17 Identities=0% Similarity=-0.091 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 016555 334 EKLRQENAALLVCHINV 350 (387)
Q Consensus 334 ~~L~~EN~~Lr~~L~~l 350 (387)
-..-.+...++.+|..+
T Consensus 48 yda~~~l~~ak~~L~~~ 64 (71)
T 2js5_A 48 YEAYRQLDEFRKSTASL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344455555555554
No 435
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=35.18 E-value=99 Score=22.09 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENS 333 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~ 333 (387)
++...|.+||.+|+.-......+++.+-.++
T Consensus 7 eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl 37 (45)
T 4gif_A 7 EEFYMLTRRVLQLETVLEGVVSQIDAVGSKL 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666655555555555444433
No 436
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=35.03 E-value=1.3e+02 Score=24.63 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=4.2
Q ss_pred HHHHHHHHhhh
Q 016555 341 AALLVCHINVI 351 (387)
Q Consensus 341 ~~Lr~~L~~l~ 351 (387)
..||.+...+.
T Consensus 74 K~LRnKA~~L~ 84 (96)
T 1t3j_A 74 KLLRNKAVQLE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 437
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=34.64 E-value=23 Score=29.64 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDE 318 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~E 318 (387)
+||..|+.+++.|+.+
T Consensus 74 eYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 74 DYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666655543
No 438
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=34.63 E-value=84 Score=27.43 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
+++..|+.||.....++....++.+.|..+...+...+
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655555555555555544443
No 439
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=34.56 E-value=99 Score=27.99 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhh
Q 016555 314 SLIDENASLKSEINQLSEN-------SEKLRQENAALLVCHINVII 352 (387)
Q Consensus 314 ~L~~EN~~L~~el~~L~ee-------~~~L~~EN~~Lr~~L~~l~~ 352 (387)
.|+.-+.+|.+.|..|.++ ...-.-|+..|+.++.++.+
T Consensus 62 ~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 62 ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHh
Confidence 3444444444444444333 23334556666666666654
No 440
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=34.41 E-value=21 Score=26.73 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASL 322 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L 322 (387)
.+..+++.|+.+|+.|+.....|
T Consensus 55 ~~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 55 LKDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888888877665544
No 441
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=34.33 E-value=95 Score=26.77 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
+.|.+|-.++..|+.|.=.|..++..-.-++..|+.....|+.
T Consensus 65 e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 65 DLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 3344444444455555444444444444445555555544443
No 442
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=34.28 E-value=54 Score=25.36 Aligned_cols=50 Identities=12% Similarity=0.103 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
.++..|..+-..|..+...|........ +...|+.+--.||++|..+...
T Consensus 17 ~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~ 66 (76)
T 1zhc_A 17 PHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIE 66 (76)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHH
Confidence 3445555555555555555544433233 6777888888888888776654
No 443
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=33.94 E-value=69 Score=28.37 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKS---EINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~---el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
++.++.|+.++++++.+...|.- +...++...++|+.|...+++.+..........
T Consensus 75 ~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~A~~~a 133 (158)
T 3tul_A 75 KSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKA 133 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 444
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=33.92 E-value=1e+02 Score=28.55 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccee---ccccccc
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSEN---SEKLRQENAALLVCHINVIIFWTVSLFSNEANRSCVFV---CECFCCN 377 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee---~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~~~~~~~~---~~~f~~n 377 (387)
+++.|..+|+....+.=....|+-.|-+. ++.-.++...|-++++.+..+.+... ...|..+ ||..|+.
T Consensus 76 rI~~l~~~vdD~~~DvwsyNaELLVlleNq~Tld~~Ds~v~~L~ekvr~qLr~NA~d~-----GnGCFe~~HKCd~~Cme 150 (222)
T 2wrg_I 76 RIENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLKNNAKEI-----GNGCFEFYHKCDDACME 150 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEC-----SSSEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhccHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHhhhHhh-----CCccchhhhhccHHHHH
Confidence 34555555555444444444444433222 23334667777788777776655543 4456553 4666666
Q ss_pred ccccccc
Q 016555 378 LLIGLTY 384 (387)
Q Consensus 378 ~l~~~~y 384 (387)
+.--.||
T Consensus 151 sIrNgTY 157 (222)
T 2wrg_I 151 SVRNGTY 157 (222)
T ss_dssp HHTTTCC
T ss_pred HHHcCCC
Confidence 6555555
No 445
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=33.88 E-value=1.2e+02 Score=30.71 Aligned_cols=47 Identities=13% Similarity=-0.001 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHI 348 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~ 348 (387)
.+++..|+..+...+.....|+..+.....++..|+.....|..+..
T Consensus 90 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 90 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555555555566666666655555556555555555443
No 446
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Probab=33.77 E-value=1.1e+02 Score=27.42 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccee---ccccccc
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSEN---SEKLRQENAALLVCHINVIIFWTVSLFSNEANRSCVFV---CECFCCN 377 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee---~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~~~~~~~~---~~~f~~n 377 (387)
+++.|..+|+....+.=....|+-.|-+. ++.-.++...|-++++.+.++.+... ...|..+ ||..|+.
T Consensus 76 ri~~l~~~vdD~~~DiwsynaELlVlleNq~tld~~Dsnv~nL~ekvk~~Lr~nA~e~-----GnGCFe~~HKCdn~Cme 150 (176)
T 1jsd_B 76 RLNMINNKIDDQIQDIWTYNAELLVLLENQKTLDEHDANVNNLYNKVKRALGSNAMED-----GKGCFELYHKCDDQCME 150 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEC-----SSSEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHhhhHhh-----CCchhhhhhcccHHHHH
Confidence 44455555554444444444444433322 22234556677777777666554433 4556654 3555665
Q ss_pred ccccccc
Q 016555 378 LLIGLTY 384 (387)
Q Consensus 378 ~l~~~~y 384 (387)
+.--.||
T Consensus 151 sIrNgTY 157 (176)
T 1jsd_B 151 TIRNGTY 157 (176)
T ss_dssp HHHTTCC
T ss_pred HHHcCCC
Confidence 5555554
No 447
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=33.74 E-value=2.6e+02 Score=25.04 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=7.9
Q ss_pred HHHHHHHHHhHHHHHH
Q 016555 281 LKRERRKQSNRESARR 296 (387)
Q Consensus 281 ~KR~RRk~rNRESARR 296 (387)
+.+++-+++.++++|-
T Consensus 32 le~ek~~l~~~e~~r~ 47 (169)
T 3k29_A 32 LELEQEKLRERESERD 47 (169)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555555554
No 448
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=33.73 E-value=1.7e+02 Score=22.77 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASL 322 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L 322 (387)
.++|-.++..++.+...+
T Consensus 13 ~eel~~klk~~~ee~~~~ 30 (71)
T 1uix_A 13 KEELNNKLKEAQEQLSRL 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 449
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=33.34 E-value=88 Score=23.83 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 016555 309 SRKVDSLIDEN 319 (387)
Q Consensus 309 e~rV~~L~~EN 319 (387)
+..+..|+.+.
T Consensus 28 ~~~l~~L~~~~ 38 (98)
T 3gwk_C 28 TEVLNLLTQEQ 38 (98)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 450
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=33.29 E-value=15 Score=24.02 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 307 ELSRKVDSLIDENASLKSEINQ 328 (387)
Q Consensus 307 eLe~rV~~L~~EN~~L~~el~~ 328 (387)
.||+++..|++.+..-.+++..
T Consensus 4 aleqkiaaleqkcaaceqkiaa 25 (32)
T 4g1a_A 4 ALEQKIAALEQKCAACEQKIAA 25 (32)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333
No 451
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=33.03 E-value=12 Score=25.51 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASL 322 (387)
Q Consensus 308 Le~rV~~L~~EN~~L 322 (387)
|..++..|+.++..+
T Consensus 9 vKkKiq~lq~q~d~a 23 (37)
T 3azd_A 9 VRRKIRSLQEQNYHL 23 (37)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 452
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.80 E-value=34 Score=34.56 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQEN 340 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN 340 (387)
.++..|+.|+..|..++..|++++..++.+.
T Consensus 39 ~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i 69 (434)
T 4b4t_M 39 NEIRIFRSELQRLSHENNVMLEKIKDNKEKI 69 (434)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333
No 453
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=32.65 E-value=42 Score=31.73 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=26.8
Q ss_pred cccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 273 TWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLK 323 (387)
Q Consensus 273 ~~~~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~ 323 (387)
.+.+.=++..+.+.+++-+..+.-+..-|++++.+|++++..|+.+...|.
T Consensus 261 ~dy~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (321)
T 3p7i_A 261 LQLVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALS 311 (321)
T ss_dssp GGGHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544444444444555556666666666666665544443
No 454
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.37 E-value=67 Score=27.27 Aligned_cols=10 Identities=40% Similarity=0.305 Sum_probs=5.2
Q ss_pred cHHHHHHHHH
Q 016555 277 NERELKRERR 286 (387)
Q Consensus 277 dE~e~KR~RR 286 (387)
++++..+.++
T Consensus 56 ~~~dl~~l~~ 65 (148)
T 3gpv_A 56 NEEALKYLEM 65 (148)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4555555553
No 455
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=32.21 E-value=1.6e+02 Score=25.12 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=2.3
Q ss_pred CCccce
Q 016555 364 NRSCVF 369 (387)
Q Consensus 364 ~~~~~~ 369 (387)
+..|-|
T Consensus 98 ~e~CCf 103 (125)
T 4g2k_A 98 GPDCSI 103 (125)
T ss_dssp CGGGGC
T ss_pred ccccee
Confidence 333443
No 456
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=32.07 E-value=93 Score=28.07 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016555 323 KSEINQLSENSEKLRQENAALLVCHINVIIFWTV 356 (387)
Q Consensus 323 ~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~ 356 (387)
+.+++..+.+++.++++...++.+|+.+...+..
T Consensus 97 ~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~ 130 (277)
T 2f1m_A 97 KQEYDQALADAQQANAAVTAAKAAVETARINLAY 130 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666777777777777777777766554433
No 457
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=31.99 E-value=2.6e+02 Score=24.49 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016555 313 DSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIF 353 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~ 353 (387)
..|..+...++.....+..++..|+.++..|..++..+..+
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEe 109 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEE 109 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44445555566666666666666666666666555554433
No 458
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=31.73 E-value=1.1e+02 Score=25.93 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 308 Le~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
-.+++..|+.||.....++....++.+.|..+...+..
T Consensus 90 Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 90 QLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777776666666666655544
No 459
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=31.67 E-value=73 Score=34.91 Aligned_cols=29 Identities=24% Similarity=0.542 Sum_probs=19.0
Q ss_pred CChh-hhhhccCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 016555 30 TDWA-AMQAYYGPRVAIPPYYNSPIASGHAPQPYMWG 65 (387)
Q Consensus 30 pdWs-~~QaYygp~~~~pp~f~s~vas~~~phPymWg 65 (387)
.||. +=|-|.|= ++|-||... ..+-|+|-
T Consensus 398 ~DW~ISRqr~WG~--pIP~w~~~~-----~~~i~v~~ 427 (862)
T 1gax_A 398 KDWNISRQLWWGH--QIPAWYCED-----CQAVNVPR 427 (862)
T ss_dssp CCCCCBCCCSSSC--CCCCEEETT-----TCCEECCC
T ss_pred cceeEecccCCCc--ccCceecCC-----CCEEEEec
Confidence 6898 78999864 666666421 12567775
No 460
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=31.49 E-value=46 Score=26.86 Aligned_cols=80 Identities=10% Similarity=0.113 Sum_probs=42.8
Q ss_pred ccccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 016555 272 ETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS----ENSEKLRQENAALLVCH 347 (387)
Q Consensus 272 e~~~~dE~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~----ee~~~L~~EN~~Lr~~L 347 (387)
|++.+=..+.+.+-+.+.+....+.. .--+....+|+.-++.|+.....|..-|...+ .++..-+.....|+.+|
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~~~~-~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i 84 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITRHNT-AGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQL 84 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCC-C--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 44555556666666655554322100 01136667888888888888888888777632 22223333344444444
Q ss_pred Hhhhh
Q 016555 348 INVII 352 (387)
Q Consensus 348 ~~l~~ 352 (387)
..+..
T Consensus 85 ~~lk~ 89 (95)
T 2c5k_T 85 DALKL 89 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 461
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=31.45 E-value=52 Score=26.95 Aligned_cols=19 Identities=5% Similarity=0.144 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016555 305 AEELSRKVDSLIDENASLK 323 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~ 323 (387)
+..|+.+++.|+.+...|+
T Consensus 6 l~~l~~~~~~l~~~l~~l~ 24 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTN 24 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444433333
No 462
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.41 E-value=54 Score=22.64 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016555 324 SEINQLSENSEKLRQENA 341 (387)
Q Consensus 324 ~el~~L~ee~~~L~~EN~ 341 (387)
.+|..|+.+...|+.|..
T Consensus 15 eQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKH 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 463
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=31.35 E-value=1.6e+02 Score=31.13 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
.++..|+...+.++.+...++.+++.|++....++.+...+.+++..
T Consensus 352 ~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 398 (695)
T 2j69_A 352 RRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQAR 398 (695)
T ss_dssp HHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666666666666655555555555554444
No 464
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=31.35 E-value=89 Score=26.81 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016555 303 AEAEELSRKVDSLIDENASLK 323 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~ 323 (387)
+..+.|+++++.|..+.++|+
T Consensus 138 ~~~~~l~~~i~~L~~~l~~le 158 (166)
T 3pjs_K 138 AAEEAYTRTTRALHERFDRLE 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 465
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=31.30 E-value=2.9e+02 Score=24.80 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016555 313 DSLIDENASLKSEINQLSENSE 334 (387)
Q Consensus 313 ~~L~~EN~~L~~el~~L~ee~~ 334 (387)
..|.+...-|..-+..+++++.
T Consensus 87 ~vL~ar~e~i~~v~~~a~~~L~ 108 (233)
T 4efa_E 87 KVLSAREQSLDGIFEETKEKLS 108 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 466
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=31.22 E-value=1e+02 Score=23.65 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=22.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSL 315 (387)
Q Consensus 281 ~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L 315 (387)
.|+.+|+..-.++.||-|.|=...+++|..-|-..
T Consensus 4 ~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~ 38 (73)
T 4h10_A 4 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 38 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 34555555566677777777677777777766543
No 467
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=31.07 E-value=1.3e+02 Score=27.95 Aligned_cols=53 Identities=6% Similarity=-0.026 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
+++++++.++..|..- .-+.-++..++.+..|+.|+..-+.+|.+.+......
T Consensus 50 kEW~eae~q~k~lpka--dkk~m~~rFQ~~v~aLE~E~~~ErqqL~etH~~RV~a 102 (219)
T 3pmr_A 50 REWAMADNQSKNLPKA--DRQALNEHFQSILQTLEEQVSGERQRLVETHATRVIA 102 (219)
T ss_dssp HHHHHHHHTTTTSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchh--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4556666555544331 1122245566667777777777777777665543333
No 468
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=30.87 E-value=1.5e+02 Score=23.71 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKS---EINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~---el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
+..++.|+..|+.|...+..+.. ....++++++.|..+...+-..|+......
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l 73 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSI 73 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=30.85 E-value=1.5e+02 Score=29.70 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=8.6
Q ss_pred CCcccccCCCCCCC
Q 016555 138 DGLAMSIGNASAES 151 (387)
Q Consensus 138 ~Gl~ms~g~~~~~~ 151 (387)
.|+++.+|.+-++|
T Consensus 60 ~g~n~i~G~NGaGK 73 (517)
T 4ad8_A 60 GGFCAFTGETGAGK 73 (517)
T ss_dssp CSEEEEEESHHHHH
T ss_pred CCeEEEEcCCCCCH
Confidence 35677777665554
No 470
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=30.74 E-value=70 Score=21.60 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 016555 313 DSLIDENASLKSEIN 327 (387)
Q Consensus 313 ~~L~~EN~~L~~el~ 327 (387)
+.|+..+..|+.+++
T Consensus 17 E~l~~r~eqL~~kLe 31 (34)
T 1a93_A 17 DLLRKRREQLKHKLE 31 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 471
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=30.74 E-value=14 Score=25.20 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 318 ENASLKSEINQLSENSEKLRQENAALLVC 346 (387)
Q Consensus 318 EN~~L~~el~~L~ee~~~L~~EN~~Lr~~ 346 (387)
+...|+.+|..|+.+++.+..+...|..+
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666655555555554444443
No 472
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=30.50 E-value=78 Score=27.31 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 311 KVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
++..|..+.+.|.++++.|.++.++|++|
T Consensus 99 ~L~~~laqLe~ls~qL~~ls~~v~~L~~q 127 (140)
T 3iyn_Q 99 KLTALLAQLDSLTRELNVVSQQLLDLRQQ 127 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555554433
No 473
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=30.48 E-value=1.2e+02 Score=24.13 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=8.3
Q ss_pred cHHHHHHHHHHHHhHHHH
Q 016555 277 NERELKRERRKQSNRESA 294 (387)
Q Consensus 277 dE~e~KR~RRk~rNRESA 294 (387)
|-+++|++-||++-|-..
T Consensus 16 di~eLkkevkKL~~~A~q 33 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQ 33 (81)
T ss_dssp --CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666555444433
No 474
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=30.34 E-value=2.5e+02 Score=23.73 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHh
Q 016555 288 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS---------ENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 288 ~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~---------ee~~~L~~EN~~Lr~~L~~ 349 (387)
+.|+|-+|=.-+|.. .+.-++++..++..-..+..++..+. .++..|..+...++.+|..
T Consensus 21 L~~~E~qry~~eka~--AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~ 89 (119)
T 3etw_A 21 LANQEEARFNEERAQ--ADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEA 89 (119)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 334555444333222 23334444444444444444444442 3555565555555555544
No 475
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=30.25 E-value=3.3e+02 Score=25.11 Aligned_cols=36 Identities=3% Similarity=-0.161 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 319 NASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 319 N~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
....+.++..++.++..++++...++.+|+.....+
T Consensus 116 ~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555666666666666777776666554433
No 476
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST cell membrane, HOST membrane, membrane, transmembrane, viral protein; HET: NAG; 2.60A {Influenza a virus} PDB: 3m5h_B* 3m5i_B* 3m5j_B* 4dj6_B* 4dj7_B* 4dj8_B* 4fqv_B 1ti8_B*
Probab=30.19 E-value=1.1e+02 Score=27.53 Aligned_cols=80 Identities=11% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCccceeccccccccc
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQL---SENSEKLRQENAALLVCHINVIIFWTVSLFSNEANRSCVFVCECFCCNLL 379 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L---~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~~~~~~~~~~~f~~n~l 379 (387)
.+++.|..+|+....+.=....||-.| +.-++.-.++...|-++++.+.+..+.-.-+.-++. -+-||..|+.+.
T Consensus 75 ~ri~~l~~kvdD~~~DiWsYnaELLVlLENq~TlD~hDsnv~nLyekvr~~L~~NA~e~GnGCFE~--yHKCdn~CmesI 152 (182)
T 3m5g_B 75 QQIGNVINWTRDAMTEIWSYNAELLVAMENQHTIDLADSEMSKLYERVKKQLRENAEEDGTGCFEI--FHKCDDQCMESI 152 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECSSSEEEE--SSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhHHHHHHHhcccccchhhHHHHHHHHHHHHHHhcchhhhcCchhhh--hhcccHHHHHHH
Q ss_pred ccccc
Q 016555 380 IGLTY 384 (387)
Q Consensus 380 ~~~~y 384 (387)
--.||
T Consensus 153 rNgTY 157 (182)
T 3m5g_B 153 RNNTY 157 (182)
T ss_dssp HTTCC
T ss_pred HcCCC
No 477
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=30.14 E-value=2.1e+02 Score=22.75 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 305 ~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
++.|+.-++.|..-..+-+.+....+.+.+.-......+++.|.+
T Consensus 26 le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 26 LETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=30.10 E-value=75 Score=31.00 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 294 ARRSRLRKQAEAEEL-----SRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (387)
Q Consensus 294 ARRSR~RKq~~~eeL-----e~rV~~L~~EN~~L~~el~~L~ee~~~L~~ 338 (387)
||..=+....+++++ .+.++.|+.+...|+++|..|+.++..+..
T Consensus 7 ~~~~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 7 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp CHHHHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=30.10 E-value=71 Score=33.30 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 287 KQSNRESARRSRLRKQAEAEELS---RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 287 k~rNRESARRSR~RKq~~~eeLe---~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
.++=+.-||..|.||+.+-+.|. ...+..+.+..+|..++..++++..+...+...-.+....|..+....
T Consensus 302 ~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~ 375 (575)
T 2i1j_A 302 VQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQL 375 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 480
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=29.93 E-value=1.6e+02 Score=26.94 Aligned_cols=57 Identities=11% Similarity=-0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVSL 358 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~ 358 (387)
+..+-.|..++...+.=-.-|+.+-+.|..++..+..++..|++++.+....-...+
T Consensus 8 R~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l 64 (223)
T 3a5c_G 8 RMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAAL 64 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=29.83 E-value=1.4e+02 Score=26.79 Aligned_cols=80 Identities=15% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCccceeccccccccc
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQL---SENSEKLRQENAALLVCHINVIIFWTVSLFSNEANRSCVFVCECFCCNLL 379 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L---~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~~~~~~~~~~~f~~n~l 379 (387)
.++..|..+|+....+.=....|+-.| +.-++.-.++...|-++++.+.+..+.-.-+.-++. -+-||..|+.+.
T Consensus 75 ~ri~~l~~kvdD~~~DvwsYnAELLVllENq~TlD~hDsnv~nLyekvr~qLr~NA~e~GnGCFE~--yHKCD~~CmesI 152 (174)
T 3ku3_B 75 RRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDNVKELGNGCFEF--YHKCDDECMNSV 152 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEECSSSEEEE--SSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhHHHHHHHhcccccchhhHHHHHHHHHHHHHHhcchhhhcCchhhh--hhcccHHHHHHH
Q ss_pred ccccc
Q 016555 380 IGLTY 384 (387)
Q Consensus 380 ~~~~y 384 (387)
--.||
T Consensus 153 rNGTY 157 (174)
T 3ku3_B 153 KNGTY 157 (174)
T ss_dssp HTTCC
T ss_pred HcCCC
No 482
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=29.82 E-value=58 Score=28.02 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 295 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (387)
Q Consensus 295 RRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~ 337 (387)
+..+++++..-...+..++.|+.+..+|.+++++|+++.+.-|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~~l~~le~~~~~~r 165 (166)
T 3pjs_K 123 QEQQQQQQFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNR 165 (166)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 483
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=29.80 E-value=1.2e+02 Score=30.36 Aligned_cols=70 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhhhhhhc--ccccCCCccce
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSE------NSEKLRQENAALLVCHINVIIFWTVSL--FSNEANRSCVF 369 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~e------e~~~L~~EN~~Lr~~L~~l~~~~~~~~--l~~~~~~~~~~ 369 (387)
|....++.+-...+.|+.....|..-.+.+.+ -.+.++.|...|+.+|..+..++...+ -+..+..+|..
T Consensus 50 ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~~~l~~~l~~le~~l~~lLlp~~~~D~~nail 127 (371)
T 1zbt_A 50 REEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIIL 127 (371)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCTTTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceEE
No 484
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Probab=29.70 E-value=3.4e+02 Score=25.16 Aligned_cols=68 Identities=9% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016555 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHIN 349 (387)
Q Consensus 282 KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~ 349 (387)
++..+...-+...+..+...+....++..+|...-.+...++.++..+++..+..+...+..+.+++.
T Consensus 297 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~ 364 (428)
T 1ek9_A 297 MVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSV 364 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 485
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=29.46 E-value=1.8e+02 Score=28.80 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 304 ~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
++..|....+.|+....+|+.....|.+++....+++..|..++..+.-++...
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql 252 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQL 252 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHH
No 486
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=29.45 E-value=21 Score=25.58 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEI 326 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el 326 (387)
|.++++++.+.+.++.++..|+.++
T Consensus 5 QrELeEa~Erae~ae~~vnkLR~k~ 29 (45)
T 3zwh_Q 5 QRELEDATETADAMNREVSSLKNKL 29 (45)
T ss_dssp SSHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=29.34 E-value=90 Score=21.39 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (387)
Q Consensus 300 RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L 336 (387)
..|+.+..|-.+....-.....|.++...|..++..|
T Consensus 3 ~EKe~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~l 39 (39)
T 1gk7_A 3 NEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 488
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=28.99 E-value=3.1e+02 Score=24.36 Aligned_cols=73 Identities=10% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 016555 292 ESARRSRLRKQAEAEELSRKVDSLIDEN--------ASLKSEINQLSENS-EKLRQENAALLVCHINVIIFWTVSLFSNE 362 (387)
Q Consensus 292 ESARRSR~RKq~~~eeLe~rV~~L~~EN--------~~L~~el~~L~ee~-~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~ 362 (387)
.-...-|.|=++.+++|..++.-+..|. .+|+.++.-+.+++ .+|......|+.+|.-...+....+...+
T Consensus 95 ~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~eelk~~l~~~v 174 (191)
T 1nfn_A 95 KELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGL 174 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred CC
Q 016555 363 AN 364 (387)
Q Consensus 363 ~~ 364 (387)
..
T Consensus 175 ee 176 (191)
T 1nfn_A 175 SA 176 (191)
T ss_dssp --
T ss_pred HH
No 489
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=28.83 E-value=1.3e+02 Score=25.27 Aligned_cols=38 Identities=18% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCH 347 (387)
Q Consensus 310 ~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L 347 (387)
++|++|+++...+..++++|++-..+.-.|-+.---.|
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~L 41 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=28.83 E-value=4.3e+02 Score=27.55 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 286 Rk~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
.++-|-|-|---|+|++ +.+...++..++...+.|+..+..+..+.+..+.....+..+-..+.......
T Consensus 341 Kki~naevae~~~lrQR--lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~ 410 (602)
T 1cii_A 341 KKIYNAEVAEWDKLRQR--LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGI 410 (602)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 491
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=28.75 E-value=2.1e+02 Score=22.31 Aligned_cols=56 Identities=7% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhhhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSEN--------------SEKLRQENAALLVCHINVIIFWTVS 357 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee--------------~~~L~~EN~~Lr~~L~~l~~~~~~~ 357 (387)
+....+|......|+.+...|+..+..|... ..++...-..|++-|..+...+...
T Consensus 17 ~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a 86 (103)
T 4i0x_B 17 EQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTA 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=28.67 E-value=2.9e+02 Score=23.97 Aligned_cols=69 Identities=13% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016555 287 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFWT 355 (387)
Q Consensus 287 k~rNRESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~~ 355 (387)
+++.|+++.+.-..=.+.+.-|+.-+..|++|...-+.-+..|..-....+......+..|++-.....
T Consensus 63 klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~ 131 (152)
T 4fla_A 63 KITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLA 131 (152)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=28.59 E-value=2.1e+02 Score=22.24 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 291 RESARRSR~RKq~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
|+|-|.+-+-=++++++|..=-+.-+.|-.-|..++.+.++.+..|..|
T Consensus 21 reAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~~E 69 (70)
T 3brv_B 21 RDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcC
No 494
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=28.42 E-value=2.3e+02 Score=24.18 Aligned_cols=84 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhhhhhc-ccccCCCccceecc
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSEN--------SEKLRQENAALLVCHINVIIFWTVSL-FSNEANRSCVFVCE 372 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee--------~~~L~~EN~~Lr~~L~~l~~~~~~~~-l~~~~~~~~~~~~~ 372 (387)
++-++.|+.+++.+..+..++.+++...++. ++..+.+...|..+|..+...+.... ++........+.+.
T Consensus 9 ~~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~vi~~~~~~~V~~Gs~ 88 (156)
T 2f23_A 9 KAGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVILEEGSGEVIGLGSV 88 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCTTCSCCCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCCCEEEeCcE
Q ss_pred ccccccccc--cccc
Q 016555 373 CFCCNLLIG--LTYR 385 (387)
Q Consensus 373 ~f~~n~l~~--~~y~ 385 (387)
..+.+...+ .+|+
T Consensus 89 V~l~~~~~~~~~~~~ 103 (156)
T 2f23_A 89 VELEDPLSGERLSVQ 103 (156)
T ss_dssp EEEECTTTCCEEEEE
T ss_pred EEEEEcCCCCEEEEE
No 495
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=28.42 E-value=1.4e+02 Score=23.24 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLV 345 (387)
Q Consensus 311 rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~ 345 (387)
.|+.|+.....++.|+..++..+..|+.+...|.+
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHHHh
No 496
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=28.40 E-value=1.2e+02 Score=22.73 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (387)
Q Consensus 306 eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~E 339 (387)
++|+.-...|.....+|...+..|...+..|...
T Consensus 12 ~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~ 45 (99)
T 3zbh_A 12 EELRGVARQYNVESSNVTELIARLDQMSHTLQGI 45 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 497
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=28.26 E-value=1.4e+02 Score=24.58 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016555 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDE 318 (387)
Q Consensus 278 E~e~KR~RRk~rNRESARRSR~RKq~~~eeLe~rV~~L~~E 318 (387)
++..++.++..++.+.+......++- ++|..+++.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~--~~l~~~l~~le~~ 133 (139)
T 3eff_K 95 GREQERRGHFVRHSEKAAEEAYTRTT--RALHERFDRLERM 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHH
No 498
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=28.18 E-value=2.1e+02 Score=22.19 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016555 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINVIIFW 354 (387)
Q Consensus 302 q~~~eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l~~~~ 354 (387)
|.-+.+=..-.+.|+.-|+.|+.+++.|..=-++-+.|-.-|..++++....+
T Consensus 11 q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv 63 (70)
T 3brv_B 11 QRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLV 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 499
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=28.08 E-value=88 Score=32.11 Aligned_cols=66 Identities=8% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCccceec--cccccccc
Q 016555 303 AEAEELSRKVDSLIDENASLKSEINQL-SENSEKLRQENAALLVCHINVIIFWTVSLFSNEANRSCVFVC--ECFCCNLL 379 (387)
Q Consensus 303 ~~~eeLe~rV~~L~~EN~~L~~el~~L-~ee~~~L~~EN~~Lr~~L~~l~~~~~~~~l~~~~~~~~~~~~--~~f~~n~l 379 (387)
.+.+.-+++-+++.+..+.++++...| ..+..+.+.+.+.+-.+|+.... -..+..+. ||||+..+
T Consensus 37 ~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~r~-----------~~r~I~hiDmDaFYAsvE 105 (517)
T 3pzp_A 37 RFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRN-----------LSNTIVHIDMDAFYAAVE 105 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCC-----------CSCCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhccC-----------cCcEEEEEecCcHHHHHH
No 500
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=27.88 E-value=3.4e+02 Score=24.54 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016555 283 RERRKQSNRESARRSRLRKQAEA----EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLVCHINV 350 (387)
Q Consensus 283 R~RRk~rNRESARRSR~RKq~~~----eeLe~rV~~L~~EN~~L~~el~~L~ee~~~L~~EN~~Lr~~L~~l 350 (387)
+.--++.|+.+....|..|-.++ ..+-.+.+.+...-..--..+......++.|+....++..+|..+
T Consensus 72 qL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L 143 (201)
T 3u0c_A 72 ALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSEL 143 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Done!