BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016557
(387 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39
PE=2 SV=2
Length = 564
Score = 281 bits (718), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 205/350 (58%), Gaps = 52/350 (14%)
Query: 70 RTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLS 129
R E D++ + E E NG + R R CPYLDT+NR VLDFDFEK CS+SLS
Sbjct: 73 REREADEDSEPEREVRAKNGRVDSEDRR----SRHCPYLDTINRSVLDFDFEKLCSISLS 128
Query: 130 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI 189
++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SLEDI
Sbjct: 129 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 188
Query: 190 RHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPL 216
+V GLNNIK D+ N +Q+L V PL
Sbjct: 189 TYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL 248
Query: 217 RNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269
RN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK
Sbjct: 249 RNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK 308
Query: 270 RFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECFQGELEV-VKEIPKNTISGND 327
F+I Q + V+F+SW LN LHS L KK +I+ + FQG + + K++P + +
Sbjct: 309 TFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQGSMRIFTKKLPHPDLPAEE 368
Query: 328 QNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQL 377
+ + D++ E++ F+ L LDLP PL+KD E+ IIPQ+
Sbjct: 369 K---EQLLHNDEYQETMVEST---FMYLTLDLPTAPLYKDEKEQLIIPQV 412
>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39
PE=1 SV=2
Length = 565
Score = 281 bits (718), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 205/350 (58%), Gaps = 52/350 (14%)
Query: 70 RTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLS 129
R E D++ + E E NG + R R CPYLDT+NR VLDFDFEK CS+SLS
Sbjct: 74 REREVDEDSEPEREVRAKNGRVDSEDRR----SRHCPYLDTINRSVLDFDFEKLCSISLS 129
Query: 130 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI 189
++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SLEDI
Sbjct: 130 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 189
Query: 190 RHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPL 216
+V GLNNIK D+ N +Q+L V PL
Sbjct: 190 TYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL 249
Query: 217 RNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269
RN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK
Sbjct: 250 RNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK 309
Query: 270 RFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECFQGELEV-VKEIPKNTISGND 327
F+I Q + V+F+SW LN LHS L KK +I+ + FQG + + K++P + +
Sbjct: 310 TFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLPHPDLPAEE 369
Query: 328 QNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQL 377
+ + D++ E++ F+ L LDLP PL+KD E+ IIPQ+
Sbjct: 370 K---EQLLHNDEYQETMVEST---FMYLTLDLPTAPLYKDEKEQLIIPQV 413
>sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39
PE=2 SV=1
Length = 565
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/350 (44%), Positives = 204/350 (58%), Gaps = 52/350 (14%)
Query: 70 RTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLS 129
R E D++ + E E NG + R R CPYLDT+NR VLDFDFEK CS+S S
Sbjct: 74 REREVDEDSEPEREVRAKNGRVDSEDRR----SRHCPYLDTINRSVLDFDFEKLCSISPS 129
Query: 130 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI 189
++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SLEDI
Sbjct: 130 HVNAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 189
Query: 190 RHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPL 216
+V GLNNIK D+ N +Q+L V PL
Sbjct: 190 TYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL 249
Query: 217 RNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269
RN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK
Sbjct: 250 RNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK 309
Query: 270 RFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECFQGELEV-VKEIPKNTISGND 327
F+I Q + V+F+SW LN LHS L KK +I+ + FQG + + K++P + +
Sbjct: 310 TFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLPHPDLPAEE 369
Query: 328 QNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQL 377
+ + D++ E++ F+ L LDLP PL+KD E+ IIPQ+
Sbjct: 370 K---EQLLHNDEYQETMVEST---FMYLTLDLPTAPLYKDEKEQLIIPQV 413
>sp|Q9USR2|UBP10_SCHPO Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubp10 PE=3 SV=1
Length = 502
Score = 248 bits (634), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/309 (43%), Positives = 181/309 (58%), Gaps = 47/309 (15%)
Query: 107 YLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYIN 166
YLDT+NR++LDFDFEK CSVSL+NL+VYACLVCG+Y+QGRG SHAY H+L HHV++N
Sbjct: 60 YLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVN 119
Query: 167 LRTEKVYCLPDGYEINDPSLEDIRHV---------------------------------G 193
T K Y LP+ Y++ +L+DI +V G
Sbjct: 120 CSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLDHTPQLSYDLMLKPYVPGFVG 179
Query: 194 LNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQ 253
+NNIK D+ NV I L V P RN+FL+ +N+ +C LV R L RK+W+ + FK
Sbjct: 180 MNNIKNNDYFNVVIHMLAHVKPFRNYFLL-KNFDNCPQ-LVQRLAILIRKLWNHKAFKSH 237
Query: 254 VSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----KNTSIIYECFQ 309
VSP E +Q V S K++ I Q +PVEF+SW LNTLH+ L K K TSI++ FQ
Sbjct: 238 VSPQELIQEVTVLSHKKYSINEQKDPVEFLSWFLNTLHNCLGGKKSTIAKPTSIVHYSFQ 297
Query: 310 GELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVM 369
G + + + + Q+ EKG D + +T+ +PFL L LDLPP P+F+D
Sbjct: 298 GFVRIESQKIR-------QHAEKGEQVVFTGDRV-IQTNVVPFLYLTLDLPPKPIFQDEF 349
Query: 370 EKNIIPQLQ 378
E NIIPQ++
Sbjct: 350 EGNIIPQVE 358
>sp|P43589|SAD1_YEAST Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SAD1 PE=1 SV=1
Length = 448
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 145/308 (47%), Gaps = 64/308 (20%)
Query: 107 YLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYIN 166
YL+TV R+ LDFD EK C ++LS LNVY CLVCG YYQGR +KS A+ HS++ HHV++N
Sbjct: 31 YLETVVREKLDFDSEKICCITLSPLNVYCCLVCGHYYQGRHEKSPAFIHSIDENHHVFLN 90
Query: 167 LRTEKVYCLPDGYEI---------------NDPS-----LEDIR--------------HV 192
L + K Y LP +I P+ LED +
Sbjct: 91 LTSLKFYMLPQNVQILHDGEVQLLNSIKFAAYPTYCPKDLEDFPRQCFDLSNRTYLNGFI 150
Query: 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKG 252
G N D+ + + + + P+R+ FL+ N+ + + R +KIW + FK
Sbjct: 151 GFTNAATYDYAHSVLLLISHMVPVRDHFLL--NHFDNQGEFIKRLSICVKKIWSPKLFKH 208
Query: 253 QVSPHEFLQAVMKASKKRFRIGVQSNPVE---FMSWLLNTLHSDLRNTKKNTSIIYECFQ 309
+S +F+ S + R G+ NP++ F+ WL N + S + K SI+ +
Sbjct: 209 HLSVDDFV------SYLKVREGLNLNPIDPRLFLLWLFNKICSSSNDLK---SILNHSCK 259
Query: 310 GELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVM 369
G++++ K +N + S+ +T + PF +L LDLP F+D
Sbjct: 260 GKVKIAKV----------ENKPEASES------VTGKVIVKPFWVLTLDLPEFSPFEDGN 303
Query: 370 EKNIIPQL 377
+ +PQ+
Sbjct: 304 SVDDLPQI 311
>sp|Q9SUX7|FB245_ARATH Putative F-box protein At4g22420 OS=Arabidopsis thaliana
GN=At4g22420 PE=4 SV=1
Length = 184
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 71/118 (60%), Gaps = 7/118 (5%)
Query: 21 KVVEQSSPSPPRLGFENPLLPLANTYDDD-----DEEEEYGGRGDSGAKVGQNGR--TGE 73
+V+E+S PP LGF N LLPLAN YDDD +E ++ R + AK NG GE
Sbjct: 41 RVIERSDSPPPPLGFNNHLLPLANAYDDDDEEEGNELKKSQARRNGVAKGEGNGNKVNGE 100
Query: 74 DDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNL 131
+E DE++DD G+G+ SR VEVRRDCPYLDTVNRQV+ D V L+ +
Sbjct: 101 AQEEVDDEEDDDDDASKGRGKHSRHVEVRRDCPYLDTVNRQVIIIDQFLMLRVPLATM 158
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 98/262 (37%), Gaps = 67/262 (25%)
Query: 97 RLVEVRRDCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLV--CGKYYQGRGQ 148
++ R CP+LD+V + +K C V NL +ACL C G Q
Sbjct: 31 KMSAFRNHCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNL--WACLENRCSYVGCGESQ 88
Query: 149 KSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRH---------- 191
H+ HS E H++ +NL T +V+C E+ PSL +R
Sbjct: 89 VDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVRQPHQIQENSVQ 148
Query: 192 ------------------------------------VGLNNIKETDFVNVTIQSLMRVTP 215
GL NI T ++N +Q+L P
Sbjct: 149 DFKIPSNTTLKTPLVAVFDDLDIEADEEDELRARGLTGLKNIGNTCYMNAALQALSNCPP 208
Query: 216 LRNFFLIPENY-RHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRI 273
L FFL R K P + + + L ++WH ++ G V P Q + K FR
Sbjct: 209 LTQFFLDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTTLFQGI-KTVNPTFRG 266
Query: 274 GVQSNPVEFMSWLLNTLHSDLR 295
Q + EF+ L++ LH +L+
Sbjct: 267 YSQQDAQEFLRCLMDLLHEELK 288
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 97/261 (37%), Gaps = 67/261 (25%)
Query: 98 LVEVRRDCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLV--CGKYYQGRGQK 149
+ R CP+LD+V + +K C V NL +ACL C G Q
Sbjct: 1 MTTFRNHCPHLDSVGEITKEDLIQKSLGACQDCKVRGPNL--WACLENRCSYVGCGESQV 58
Query: 150 SHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRH----------- 191
H+ HS E H++ +NL T +V+C E+ PSL +R
Sbjct: 59 DHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTPPSLPHVRQPQQTQENSVQD 118
Query: 192 -----------------------------------VGLNNIKETDFVNVTIQSLMRVTPL 216
GL NI T ++N +Q+L PL
Sbjct: 119 FKIPSNPALKTPMVAVSEDLDIEVEEEDELKARGLTGLKNIGNTCYMNAALQALSNCPPL 178
Query: 217 RNFFL-IPENYRHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIG 274
FFL R K P + + + L ++WH ++ G V P Q + K FR
Sbjct: 179 TQFFLDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPANLFQGI-KTVNPTFRGY 236
Query: 275 VQSNPVEFMSWLLNTLHSDLR 295
Q + EF+ L++ LH +L+
Sbjct: 237 SQQDAQEFLRCLMDLLHEELK 257
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 96/257 (37%), Gaps = 67/257 (26%)
Query: 102 RRDCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLV--CGKYYQGRGQKSHAY 153
R CP+LD+V + +K C V NL +ACL C G Q H+
Sbjct: 5 RNHCPHLDSVGEITKEDLIQKSQGTCQDCKVRGPNL--WACLENRCSYVGCGESQVDHST 62
Query: 154 THSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRH--------------- 191
HS E H++ +NL T +V+C E+ PSL +R
Sbjct: 63 IHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVRQPHQIQENSVQDFKIP 122
Query: 192 -------------------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFF 220
GL NI T ++N +Q+L PL FF
Sbjct: 123 SNTTLKTPLVAVFDDLDIEVDEEDELRARGLTGLKNIGNTCYMNAALQALSNCPPLTQFF 182
Query: 221 LIPENY-RHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSN 278
L R K P + + + L ++WH ++ G V P Q + K FR Q +
Sbjct: 183 LDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTNLFQGI-KTVNPTFRGYSQQD 240
Query: 279 PVEFMSWLLNTLHSDLR 295
EF+ L++ LH +L+
Sbjct: 241 AQEFLRCLMDLLHEELK 257
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 97/257 (37%), Gaps = 67/257 (26%)
Query: 102 RRDCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLV--CGKYYQGRGQKSHAY 153
R CP+LD+V + +K C V NL +ACL C G Q H+
Sbjct: 5 RSHCPHLDSVGEITKEDLIQKSHGSCQDCKVRGPNL--WACLENRCSYVGCGESQVDHST 62
Query: 154 THSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRHV-------------- 192
HS E H++ +NL T +V+C E+ PSL ++ +
Sbjct: 63 IHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVKPLHQIQENGVQDFKIP 122
Query: 193 --------------------------------GLNNIKETDFVNVTIQSLMRVTPLRNFF 220
GL NI T ++N +Q+L PL FF
Sbjct: 123 SNTTLKTPLVAVFDDLDIEVEEEDELKARGLTGLKNIGNTCYMNAALQALSNCPPLTQFF 182
Query: 221 LIPENY-RHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSN 278
L R K P + + + L ++WH ++ G V P Q + K FR Q +
Sbjct: 183 LDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTTLFQGI-KTVNPTFRGYSQQD 240
Query: 279 PVEFMSWLLNTLHSDLR 295
EF+ L++ LH +L+
Sbjct: 241 AQEFLRCLMDLLHEELK 257
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 95/256 (37%), Gaps = 68/256 (26%)
Query: 104 DCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLVCGKYYQGRGQK--SHAYTH 155
DCP+L+ V + +K C V NL +ACL G Y G G+ H+ H
Sbjct: 8 DCPHLECVGEITKEELIQKSHGQCQDCKVGGPNL--WACLENGCSYVGCGESHADHSTVH 65
Query: 156 SLEAGHHVYINLRTEKVYC------------------LPDGYEINDP------------- 184
S E H++ +NL T +V+C LP+ + P
Sbjct: 66 SQETRHNLTVNLTTLRVWCYACTKEVFLERKLGPHKQLPNAAKAVSPVQTPCQDLNTPGS 125
Query: 185 ----------SLEDIRH-------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFL 221
+ +D+ GL NI T ++N +Q+L PL FFL
Sbjct: 126 PTSLRVPSAGTCDDLDMETEEEDELRTRGLTGLKNIGNTCYMNAALQALSNCPPLTQFFL 185
Query: 222 IPENYRHC--KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNP 279
K L + L +WH +N V P Q + KA FR Q +
Sbjct: 186 ECGGLVKTDKKPALCKSYQKLITDLWH-KNRNAYVVPTNLFQGI-KAVNPMFRGYSQQDS 243
Query: 280 VEFMSWLLNTLHSDLR 295
EF+ L++ LH +L+
Sbjct: 244 QEFLRCLMDQLHEELK 259
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 95/249 (38%), Gaps = 61/249 (24%)
Query: 104 DCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLVCGKYYQGRGQK--SHAYTH 155
DCP+L++V + +K C V NL +ACL G Y G G+ H+ H
Sbjct: 7 DCPHLESVGEVTKEELIKKSHGSCQDCRVRGPNL--WACLENGCSYVGCGESHVDHSTLH 64
Query: 156 SLEAGHHVYINLRTEKVYCL---------------PDGYEINDPSLEDIRH--------- 191
S + H + +NL T +V+C P ++ D ++ +
Sbjct: 65 SQDTKHCLTVNLTTLRVWCYTCSKEVFLDRKLSTQPTSAKLQDSHTQESKMSSSLTLKIP 124
Query: 192 -----------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRH 228
GL NI T ++N +Q+L PL ++FL
Sbjct: 125 AAVVSENLDIELEEEDELKTRGLTGLKNIGNTCYMNAALQALSNCPPLTHYFLDCGGLAR 184
Query: 229 C--KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWL 286
K L + L IWH +N G V P Q + K+ FR Q + EF+ L
Sbjct: 185 TDKKPALCKSYQKLMSDIWH-KNRPGFVIPTNLFQGI-KSVNPTFRGYSQQDAQEFLRCL 242
Query: 287 LNTLHSDLR 295
++ LH +L+
Sbjct: 243 MDVLHEELK 251
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4
PE=2 SV=1
Length = 963
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 87/200 (43%), Gaps = 22/200 (11%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L PL ++FL E N K + + +L ++
Sbjct: 302 CGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQ 361
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+W R+ V+P F V + + + F Q + E +++LL+ LH DL KK +
Sbjct: 362 MWSGRD--AHVAPRMFKTQVGRFAPQ-FSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 418
Query: 304 IYECFQGELEVV--KEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-----PFLMLG 356
+ G +VV KE +N ND G + E +++ PF L
Sbjct: 419 ELKDANGRPDVVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 357 LDLPPPPLFKD-VMEKNIIP 375
L P PL KD VME ++P
Sbjct: 479 L---PLPLKKDRVMEVFLVP 495
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 95/250 (38%), Gaps = 54/250 (21%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L + C S +S N++ACL Y G G+ H+ H+
Sbjct: 8 CPHLDSIGEVTKEDLLLKSKSTCQSCGVSGPNLWACLQVSCSYVGCGESFADHSTLHAQA 67
Query: 159 AGHHVYINLRTEKVYCL---------------PDG------------------------- 178
H++ +NL T +V+C P G
Sbjct: 68 KKHNLTVNLTTFRVWCYACEKEVFLEPRLAAHPPGPAPKFSEQDSPPPSHPLKAVPIAVA 127
Query: 179 ----YEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-IPENYRHCKSP- 232
E D L+ G+ N+ + ++N +Q+L PL FFL R K P
Sbjct: 128 DEGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA 187
Query: 233 LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHS 292
L + L ++WH R V P + K FR Q + EF+ L++ LH
Sbjct: 188 LCKSYQKLVSEVWH-RKRPSYVVPTSLSHGI-KLVNPMFRGYAQQDTQEFLRCLMDQLHE 245
Query: 293 DLRNTKKNTS 302
+L+ T+
Sbjct: 246 ELKEPVVATA 255
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 22/200 (11%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L PL ++FL E N K + + +L ++
Sbjct: 302 CGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQ 361
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+W R+ V+P F V + + + F Q + E +++LL+ LH DL KK +
Sbjct: 362 MWSGRD--AHVAPRMFKTQVGRFAPQ-FSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 418
Query: 304 IYECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-----PFLMLG 356
+ G + V KE +N ND G + E +++ PF L
Sbjct: 419 ELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 357 LDLPPPPLFKD-VMEKNIIP 375
L P PL KD VME ++P
Sbjct: 479 L---PLPLKKDRVMEIFLVP 495
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4
PE=1 SV=3
Length = 963
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 22/200 (11%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L PL ++FL E N K + + +L ++
Sbjct: 302 CGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQ 361
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+W R+ V+P F V + + + F Q + E +++LL+ LH DL KK +
Sbjct: 362 MWSGRD--AHVAPRMFKTQVGRFAPQ-FSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 418
Query: 304 IYECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-----PFLMLG 356
+ G + V KE +N ND G + E +++ PF L
Sbjct: 419 ELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 357 LDLPPPPLFKD-VMEKNIIP 375
L P PL KD VME ++P
Sbjct: 479 L---PLPLKKDRVMEVFLVP 495
>sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis
thaliana GN=UBP11 PE=3 SV=2
Length = 892
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 21/184 (11%)
Query: 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HCKSPLVHR------FGDLTRK 243
GL N+ T F+N T+Q L P+ +FL ++YR + K+PL R FG+L RK
Sbjct: 302 GLQNLGNTCFMNSTLQCLAHTPPIVEYFL--QDYRSDINAKNPLGMRGELAIAFGELLRK 359
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+W + + V+P F + + + + F Q + E +++LL+ LH DL K+ I
Sbjct: 360 LWSSG--QNTVAPRAFKTKLARFAPQ-FSGYNQHDSQEMLAFLLDGLHEDLNKVKRKPYI 416
Query: 304 IYECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-----PFLMLG 356
+ G + EV +E K + ND G + + ++ PF+ L
Sbjct: 417 EAKDSDGRPDDEVAEEKWKYHKARNDSVIVDVFQGQYKSTLVCPDCGKISITFDPFMYLS 476
Query: 357 LDLP 360
L LP
Sbjct: 477 LPLP 480
>sp|A5PN09|UBP20_DANRE Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio GN=usp20
PE=2 SV=1
Length = 911
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 99/265 (37%), Gaps = 63/265 (23%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L + C S + N++ACL C Y G G+ H+ H+
Sbjct: 8 CPHLDSIGEVTKEELIQKSKGTCQSCGVGGPNLWACLQCDCPYVGCGESYSDHSTIHAQA 67
Query: 159 AGHHVYINLRTEKVYCLPDGYEI--------------------NDPSLEDIRH------- 191
H++ +NL T +V+C E+ DP + +
Sbjct: 68 KKHNLTVNLTTFRVWCYVCEREVFLEPKPVTPVSSAHRCKPHDQDPVSQTTCYPLKAVPI 127
Query: 192 --------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCK 230
G+ NI + ++N +Q+L PL FF R K
Sbjct: 128 AVADEEGSESEEDELKPRGLTGMKNIGNSCYMNAALQALSNCPPLTQFFQDCSGLVRTDK 187
Query: 231 SP-LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNT 289
P L + L ++WH + V P + K FR Q + EF+ L++
Sbjct: 188 KPALCKSYQKLISELWHKKR-PSYVVPTTLFHGI-KLVNPMFRGYAQQDTQEFLRCLMDQ 245
Query: 290 LHSDLRNTKKNTSIIYECFQGELEV 314
LH +L+ +++C G EV
Sbjct: 246 LHEELKEP------LFDCSGGISEV 264
>sp|A0JM59|UBP20_XENTR Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus tropicalis
GN=usp20 PE=2 SV=1
Length = 884
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 54/243 (22%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L + C S + N++ACL G G G+ H+ H+
Sbjct: 8 CPHLDSIGEVTKEDLILKSKGTCESCGVGGPNLWACLQDGCQSVGCGESYVDHSTLHAQA 67
Query: 159 AGHHVYINLRTEKVYCL------------PDGYEINDPSL-------------------- 186
H++ +NL T +V+C P + P L
Sbjct: 68 KKHNLTVNLTTFRVWCYACEKEVFLDPRGPPASQTTSPRLSHRDFPTSAHPLKSVPIAVG 127
Query: 187 ---------EDIRH---VGLNNIKETDFVNVTIQSLMRVTPLRNFFL-IPENYRHCKSP- 232
+DI+ G+ NI + ++N +Q+L PL FFL R K P
Sbjct: 128 DDGESESDEDDIKPRGLTGMKNIGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA 187
Query: 233 LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHS 292
L + L ++WH + V P + K FR Q + EF+ L++ LH
Sbjct: 188 LCKSYQKLISELWHKKR-PSYVVPSSLYHGI-KLINPLFRGYSQQDTQEFLRCLMDQLHE 245
Query: 293 DLR 295
+L+
Sbjct: 246 ELK 248
>sp|Q9Y2K6|UBP20_HUMAN Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens GN=USP20
PE=1 SV=2
Length = 914
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 54/254 (21%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L + C S ++ N++ACL Y G G+ H+ H+
Sbjct: 8 CPHLDSIGEVTKEDLLLKSKGTCQSCGVTGPNLWACLQVACPYVGCGESFADHSTIHAQA 67
Query: 159 AGHHVYINLRTEKVYCLPDGYEI---------------------NDPSLEDIRHV----- 192
H++ +NL T +++C E+ + P ++ V
Sbjct: 68 KKHNLTVNLTTFRLWCYACEKEVFLEQRLAAPLLGSSSKFSEQDSPPPSHPLKAVPIAVA 127
Query: 193 ------------------GLNNIKETDFVNVTIQSLMRVTPLRNFFL-IPENYRHCKSP- 232
G+ N+ + ++N +Q+L PL FFL R K P
Sbjct: 128 DEGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA 187
Query: 233 LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHS 292
L + L ++WH + V P + K FR Q + EF+ L++ LH
Sbjct: 188 LCKSYQKLVSEVWHKKR-PSYVVPTSLSHGI-KLVNPMFRGYAQQDTQEFLRCLMDQLHE 245
Query: 293 DLRNTKKNTSIIYE 306
+L+ T + E
Sbjct: 246 ELKEPVVATVALTE 259
>sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis
GN=usp15 PE=2 SV=2
Length = 982
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 46/244 (18%)
Query: 173 YCLPD-----GYEINDPSLEDIRH------VGLNNIKETDFVNVTIQSLMRVTPLRNFFL 221
YCLP YE ++P RH GL+N+ T F+N IQ L PL +FL
Sbjct: 262 YCLPSYAAYKNYEYSEPG----RHNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFL 317
Query: 222 IP--------ENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRI 273
+N + + + +L +++W + V+P F V + + +F
Sbjct: 318 NDKYQDELNMDNPLGMRGEIAKSYAELIKQMWSGK--YSYVTPRAFKTQVGRFA-PQFSG 374
Query: 274 GVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELE--VVKEIPKNTISGNDQNTE 331
Q + E +++LL+ LH DL +K I + G + V +E +N I ND
Sbjct: 375 YQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHIKRNDSIIV 434
Query: 332 KGSDGGDDHDNITTETSRM-----PFLMLGLDLPPP-------------PLFKDVMEKNI 373
G + E S++ PF L L LP PL K + K I
Sbjct: 435 DIFHGLFKSTLVCPECSKISVTFDPFCYLTLPLPMKKERALEVYLVRMDPLAKPMQYKVI 494
Query: 374 IPQL 377
+P++
Sbjct: 495 VPKI 498
>sp|Q5R5Z6|UBP20_PONAB Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii GN=USP20
PE=2 SV=1
Length = 913
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 53/253 (20%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L C S ++ N++ACL Y G G+ H+ H+
Sbjct: 8 CPHLDSIGEVTKEDLLLKSMGTCQSCGVTGPNLWACLQVACPYVGCGESFADHSTIHAQA 67
Query: 159 AGHHVYINLRTEKVYCLPDGYEI--------------------NDPSLEDIRHV------ 192
H++ +NL T +++C E+ + P ++ V
Sbjct: 68 KKHNLTVNLTTFRLWCYACEKEVFLEQRLAAPLLGSSKFSEQDSPPPSHPLKAVPIAVAD 127
Query: 193 -----------------GLNNIKETDFVNVTIQSLMRVTPLRNFFL-IPENYRHCKSP-L 233
G+ N+ + ++N +Q+L PL FFL R K P L
Sbjct: 128 EGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPAL 187
Query: 234 VHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSD 293
+ L ++WH + V P + K FR Q + EF+ L++ LH +
Sbjct: 188 CKSYQKLVSEVWHKKR-PSYVVPTSLSHGI-KLVNPMFRGYAQQDTQEFLRCLMDQLHEE 245
Query: 294 LRNTKKNTSIIYE 306
L+ T + E
Sbjct: 246 LKEPVVATVALTE 258
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36
PE=1 SV=3
Length = 1121
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHA-RNF 250
GL+N+ T F+N TIQ L PL N+ L E+ R C + I A N
Sbjct: 122 AGLHNLGNTCFLNATIQCLTYTPPLANYLLSKEHARSCHQGSFCMLCVMQNHIVQAFANS 181
Query: 251 KGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLH-------SDLRNTKKNTSI 303
+ P F++ + K + + FR G Q + EF+ + ++ + + L + T++
Sbjct: 182 GNAIKPVSFIRDLKKIA-RHFRFGNQEDAHEFLRYTIDAMQKACLNGCAKLDRQTQATTL 240
Query: 304 IYECFQGEL 312
+++ F G L
Sbjct: 241 VHQIFGGYL 249
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4
PE=1 SV=3
Length = 962
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 22/200 (11%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L PL +FL E N K + + +L ++
Sbjct: 302 CGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQ 361
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+W R+ V+P F V + + + F Q + E ++++L+ LH DL KK +
Sbjct: 362 MWSGRD--THVAPRMFKTQVGRFAPQ-FSGYQQQDSQELLAFILDGLHEDLNRVKKKPYL 418
Query: 304 IYECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-----PFLMLG 356
+ G + V KE +N ND G + E +++ PF L
Sbjct: 419 EPKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 357 LDLPPPPLFKD-VMEKNIIP 375
L P PL KD +ME ++P
Sbjct: 479 L---PLPLKKDRIMEVFLVP 495
>sp|Q8C6M1|UBP20_MOUSE Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20
PE=1 SV=1
Length = 916
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 95/248 (38%), Gaps = 54/248 (21%)
Query: 100 EVRRDCPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAY 153
+ R CP+LD V ++ L + C S ++ N++ACL Y G G+ H+
Sbjct: 3 DARDLCPHLDCIGEVTKEDLLLKSKGTCQSCGVAGPNLWACLQVTCPYVGCGESFADHSS 62
Query: 154 THSLEAGHHVYINLRTEKVYCLPDGYEI---------------------NDPSLEDIRHV 192
H+ H++ +NL T +V+C E+ + P ++ V
Sbjct: 63 IHAQVKKHNLTVNLTTFRVWCYACEREVFLEQRLAVHLASSSARLSEQDSPPPSHPLKAV 122
Query: 193 -----------------------GLNNIKETDFVNVTIQSLMRVTPLRNFFL-IPENYRH 228
G+ N+ + ++N +Q+L PL FFL R
Sbjct: 123 PIAVADEGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRT 182
Query: 229 CKSP-LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLL 287
K P L + L ++WH + V P + K FR Q + EF+ L+
Sbjct: 183 DKKPALCKSYQKLISEVWHKKR-PSYVVPTSLSHGI-KLVNPMFRGYAQQDTQEFLRCLM 240
Query: 288 NTLHSDLR 295
+ LH +L+
Sbjct: 241 DQLHEELK 248
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 22/200 (11%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L PL +FL E N K + + +L ++
Sbjct: 302 CGLGNLGNTCFMNSALQCLSNTGPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQ 361
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+W R+ V+P F V + + + F Q + E ++++L+ LH DL KK +
Sbjct: 362 MWSGRD--THVAPRMFKTQVGRFAPQ-FSGYQQQDSQELLAFILDGLHEDLNRVKKKPYL 418
Query: 304 IYECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-----PFLMLG 356
+ G + V KE +N ND G + E +++ PF L
Sbjct: 419 EPKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 357 LDLPPPPLFKD-VMEKNIIP 375
L P PL KD +ME ++P
Sbjct: 479 L---PLPLKKDRIMEVFLVP 495
>sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana
GN=UBP8 PE=1 SV=2
Length = 871
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP-------ENYRHCKSPLVHRFGDLTRKI 244
GL N+ T F+N ++Q L L +FFL +N K + FGDL R +
Sbjct: 279 TGLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSL 338
Query: 245 WHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSII 304
W V+P F +A + +F Q + E +++LL+ LH DL K +
Sbjct: 339 WAPG--ASTVAPRTF-KAKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVE 395
Query: 305 YECFQG--ELEVVKEIPKNTISGNDQ---NTEKGSDGGDDHDNITTETSRM--PFLMLGL 357
+ G + EV E +N ++ ND + +G I + S M PF+ L L
Sbjct: 396 AKDGDGRPDAEVADEYWRNHVARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSL 455
Query: 358 DLP 360
LP
Sbjct: 456 PLP 458
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 II 304
I+
Sbjct: 327 IL 328
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 II 304
I+
Sbjct: 327 IL 328
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 II 304
I+
Sbjct: 327 IL 328
>sp|B1AQJ2|UBP36_MOUSE Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36
PE=2 SV=1
Length = 1098
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHA-RNF 250
GL+N+ T F+N TIQ L PL N+ L E+ R C + + A N
Sbjct: 122 AGLHNLGNTCFLNSTIQCLTYTPPLANYLLSKEHARSCHQGGFCMLCLMQNHMVQAFANS 181
Query: 251 KGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTL-------HSDLRNTKKNTSI 303
+ P F++ + K + + FR G Q + EF+ + ++ + ++ L + T++
Sbjct: 182 GNAIKPVSFIRDLKKIA-RHFRFGNQEDAHEFLRYTIDAMQKACLNGYAKLDRQTQATTL 240
Query: 304 IYECFQGEL 312
+++ F G L
Sbjct: 241 VHQIFGGYL 249
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 II 304
I+
Sbjct: 327 IL 328
>sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus
GN=Usp15 PE=1 SV=1
Length = 952
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 97/240 (40%), Gaps = 38/240 (15%)
Query: 173 YCLPD-----GYEINDPSL--EDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP-- 223
YCLP Y+ ++P E GL+N+ T F+N IQ L PL +FL
Sbjct: 234 YCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKY 293
Query: 224 ------ENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQS 277
+N + + + +L +++W + V+P F V + + + F Q
Sbjct: 294 QEELNFDNPLGMRGEIAKSYAELIKQMWSGKF--SYVTPRAFKTQVGRFAPQ-FSGYQQQ 350
Query: 278 NPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELE--VVKEIPKNTISGNDQNTEKGSD 335
+ E +++LL+ LH DL +K I + G + V +E +N + ND
Sbjct: 351 DCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFH 410
Query: 336 GGDDHDNITTETSRM-----PFLMLGLDLPPP-------------PLFKDVMEKNIIPQL 377
G + E +++ PF L L LP PL K + K I+P++
Sbjct: 411 GLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKI 470
>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15
PE=2 SV=1
Length = 981
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 97/240 (40%), Gaps = 38/240 (15%)
Query: 173 YCLPD-----GYEINDPSL--EDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP-- 223
YCLP Y+ ++P E GL+N+ T F+N IQ L PL +FL
Sbjct: 263 YCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKY 322
Query: 224 ------ENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQS 277
+N + + + +L +++W + V+P F V + + + F Q
Sbjct: 323 QEELNFDNPLGMRGEIAKSYAELIKQMWSGKF--SYVTPRAFKTQVGRFAPQ-FSGYQQQ 379
Query: 278 NPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELE--VVKEIPKNTISGNDQNTEKGSD 335
+ E +++LL+ LH DL +K I + G + V +E +N + ND
Sbjct: 380 DCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFH 439
Query: 336 GGDDHDNITTETSRM-----PFLMLGLDLPPP-------------PLFKDVMEKNIIPQL 377
G + E +++ PF L L LP PL K + K I+P++
Sbjct: 440 GLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKI 499
>sp|O94966|UBP19_HUMAN Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo sapiens GN=USP19
PE=1 SV=2
Length = 1318
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 24/148 (16%)
Query: 155 HSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVT 214
HS +G V EK CLP G+ GL N+ T F+N IQSL
Sbjct: 473 HSPVSGDSVEEEEEEEKKVCLP-GF------------TGLVNLGNTCFMNSVIQSLSNTR 519
Query: 215 PLRNFF--------LIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKA 266
LR+FF + N L F L R +W + Q S L+A++ +
Sbjct: 520 ELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLLRALWKGTHHAFQPSK---LKAIVAS 576
Query: 267 SKKRFRIGVQSNPVEFMSWLLNTLHSDL 294
+F Q + EFM++LL+ LH DL
Sbjct: 577 KASQFTGYAQHDAQEFMAFLLDGLHEDL 604
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42
PE=1 SV=3
Length = 1324
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 111 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNP 170
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 171 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 230
Query: 305 YECFQGEL 312
+ F G L
Sbjct: 231 CQIFGGYL 238
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42
PE=3 SV=1
Length = 1333
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 111 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNP 170
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 171 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 230
Query: 305 YECFQGEL 312
+ F G L
Sbjct: 231 CQIFGGYL 238
>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15
PE=1 SV=3
Length = 981
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 97/240 (40%), Gaps = 38/240 (15%)
Query: 173 YCLPD-----GYEINDPSL--EDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP-- 223
YCLP Y+ ++P E GL+N+ T F+N IQ L PL +FL
Sbjct: 263 YCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKY 322
Query: 224 ------ENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQS 277
+N + + + +L +++W + V+P F V + + + F Q
Sbjct: 323 QEELNFDNPLGMRGEIAKSYAELIKQMWSGKF--SYVTPRAFKTQVGRFAPQ-FSGYQQQ 379
Query: 278 NPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELE--VVKEIPKNTISGNDQNTEKGSD 335
+ E +++LL+ LH DL +K I + G + V +E +N + ND
Sbjct: 380 DCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFH 439
Query: 336 GGDDHDNITTETSRM-----PFLMLGLDLPPP-------------PLFKDVMEKNIIPQL 377
G + E +++ PF L L LP PL K + K ++P++
Sbjct: 440 GLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKI 499
>sp|Q3UJD6|UBP19_MOUSE Ubiquitin carboxyl-terminal hydrolase 19 OS=Mus musculus GN=Usp19
PE=2 SV=1
Length = 1360
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 155 HSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVT 214
HS +G V + EK CLP G+ GL N+ T F+N IQSL
Sbjct: 515 HSPVSGDSVEEDEEEEKKVCLP-GF------------TGLVNLGNTCFMNSVIQSLSNTR 561
Query: 215 PLRNFF--------LIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKA 266
LR+FF + N L F L R +W + Q S L+A++ +
Sbjct: 562 ELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLLRALWKGTHQAFQPSK---LKAIVAS 618
Query: 267 SKKRFRIGVQSNPVEFMSWLLNTLHSDL 294
+F Q + EFM++LL+ LH DL
Sbjct: 619 KASQFTGYAQHDAQEFMAFLLDGLHEDL 646
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42
PE=2 SV=1
Length = 1324
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 110 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNP 169
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 170 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 229
Query: 305 YECFQGEL 312
+ F G L
Sbjct: 230 CQIFGGYL 237
>sp|B1WBD7|UBP20_XENLA Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus laevis GN=usp20
PE=2 SV=1
Length = 840
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 16/202 (7%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLV--CGKYYQGRGQKSHAYTHSLE 158
CP+LD+ V ++ L + C S + N++ACL C G H+ H+ +
Sbjct: 8 CPHLDSIGEVTKEDLILKSKGTCESCGVGGPNLWACLQDGCQSVGCGESYADHSTLHAQD 67
Query: 159 AGHHVYINLRTEKVYCLPDGYEINDPSLEDIRH---VGLNNIKETDFVNVTIQSLMRVTP 215
+ L++ + DG +D +DI+ G+ NI + ++N +Q+L P
Sbjct: 68 FPSPAH-PLKSVPIAVGDDGESESDE--DDIKPRGLTGMKNIGNSCYMNAALQALSNCPP 124
Query: 216 LRNFFL-IPENYRHCKSP-LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRI 273
L FFL R K P L + L ++WH + V P + K FR
Sbjct: 125 LTQFFLECGGLVRTDKKPALCKSYQKLVSELWHKKR-PSYVVPSSLYHGI-KLINPLFRG 182
Query: 274 GVQSNPVEFMSWLLNTLHSDLR 295
Q + EF+ L++ LH +L+
Sbjct: 183 YSQQDTQEFLRCLMDQLHEELK 204
>sp|Q6J1Y9|UBP19_RAT Ubiquitin carboxyl-terminal hydrolase 19 OS=Rattus norvegicus
GN=Usp19 PE=1 SV=1
Length = 1357
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 155 HSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVT 214
HS +G V + EK CLP G+ GL N+ T F+N IQSL
Sbjct: 512 HSPVSGDSVEEDEEEEKKVCLP-GF------------TGLVNLGNTCFMNSVIQSLSNTR 558
Query: 215 PLRNFF--------LIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKA 266
LR+FF + N L F L R +W + Q S L+A++ +
Sbjct: 559 ELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLLRALWKGTHQAFQPSK---LKAIVAS 615
Query: 267 SKKRFRIGVQSNPVEFMSWLLNTLHSDL 294
+F Q + EFM++LL+ LH DL
Sbjct: 616 KASQFTGYAQHDAQEFMAFLLDGLHEDL 643
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus
GN=Usp42 PE=3 SV=1
Length = 1325
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 110 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNP 169
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 170 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 229
Query: 305 YECFQGEL 312
+ F G L
Sbjct: 230 CQIFGGYL 237
>sp|Q70EL4|UBP43_HUMAN Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43
PE=1 SV=2
Length = 1123
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC--KSPLVHRFGDLTRKIWHARNF 250
GL N T F+N +Q L L F + YR ++ + + L R +W R +
Sbjct: 102 GLKNHGNTCFMNAVVQCLSNTDLLAEFLAL-GRYRAAPGRAEVTEQLAALVRALW-TREY 159
Query: 251 KGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKN 300
Q+S EF AV K + F+ Q + +EF+ WLL+ +H DL + +
Sbjct: 160 TPQLS-AEFKNAVSKYGSQ-FQGNSQHDALEFLLWLLDRVHEDLEGSSRG 207
>sp|Q8BUM9|UBP43_MOUSE Ubiquitin carboxyl-terminal hydrolase 43 OS=Mus musculus GN=Usp43
PE=2 SV=2
Length = 1132
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC--KSPLVHRFGDLTRKIWHARNF 250
GL N T F+N +Q L L F + YR ++ + + L R +W R +
Sbjct: 102 GLKNHGNTCFMNAVVQCLSNTDLLAEFLAL-GRYRAAPGRAEVTEQLAALVRALW-TREY 159
Query: 251 KGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQG 310
Q+S EF AV K + F+ Q + +EF+ WLL+ +H DL + ++ E
Sbjct: 160 TPQLS-AEFKNAVSKYGSQ-FQGNSQHDALEFLLWLLDRVHEDLEGSAHG--LVSEQLPP 215
Query: 311 ELEVVKE 317
E+ + E
Sbjct: 216 EVSKISE 222
>sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana
GN=UBP10 PE=2 SV=2
Length = 923
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP-------ENYRHCKSPLVHRFGDLTRKI 244
GL+N+ T F+N +Q L P+ +FL +N L FGDL +K+
Sbjct: 304 AGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKL 363
Query: 245 WHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
W + + V+P F + + + + F Q + E +++LL+ LH DL K+ I
Sbjct: 364 WSSG--RNAVAPRAFKTKLARFAPQ-FSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYI 419
>sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15
PE=2 SV=1
Length = 952
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 38/240 (15%)
Query: 173 YCLPD-----GYEINDPSL--EDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP-- 223
YCLP Y+ ++P E GL+N+ T F+N Q L PL +FL
Sbjct: 234 YCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAFQCLSNTPPLTEYFLNDKY 293
Query: 224 ------ENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQS 277
+N + + + +L +++W + V+P F V + + + F Q
Sbjct: 294 QEELNFDNPLGMRGEIAKSYAELIKQMWSGK--YSYVTPRAFKTQVGRFAPQ-FSGYQQQ 350
Query: 278 NPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELE--VVKEIPKNTISGNDQNTEKGSD 335
+ E +++LL+ LH DL +K I + G + V +E +N + ND
Sbjct: 351 DCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFH 410
Query: 336 GGDDHDNITTETSRM-----PFLMLGLDLPPP-------------PLFKDVMEKNIIPQL 377
G + E +++ PF L L LP PL K + K ++P++
Sbjct: 411 GLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKI 470
>sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana
GN=UBP9 PE=2 SV=1
Length = 910
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP-------ENYRHCKSPLVHRFGDLTRKI 244
GL+N+ T F+N +Q L P+ +FL +N L FGDL +K+
Sbjct: 303 AGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKL 362
Query: 245 WHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
W + + V+P F + + + + F Q + E +++LL+ LH DL K+ I
Sbjct: 363 WSSG--RNSVAPRAFKTKLARFAPQ-FSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYI 418
>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana
GN=UBP5 PE=1 SV=2
Length = 924
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRH---CKSPL------VHRFGDLTR 242
GL N+ T F+N IQ L+ ++F E+Y ++PL FGDL R
Sbjct: 317 TGLLNLGNTCFMNSAIQCLVHTPEFASYF--QEDYHQEINWQNPLGMVGELALAFGDLLR 374
Query: 243 KIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTS 302
K+W + ++P F +A + +F Q + E +++LL+ LH DL K
Sbjct: 375 KLWAPG--RTPIAPRPF-KAKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPY 431
Query: 303 IIYECFQG--ELEVVKEIPKNTISGND 327
I G + EV E KN I+ ND
Sbjct: 432 INSRDADGRPDEEVADEFWKNHIARND 458
>sp|Q6P8X6|UBP50_MOUSE Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Mus musculus
GN=Usp50 PE=2 SV=1
Length = 390
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 27/143 (18%)
Query: 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFL----IPENYRHCKSPLVHRFGDLTRKIWHAR 248
GL N+ T ++N +Q L V+PL +FL I + C S + F L +W
Sbjct: 46 GLRNLGNTCYMNAILQCLCSVSPLVEYFLSGKYITALKKDC-SEVTTAFAYLMTDMWLGD 104
Query: 249 NFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR-------NTKKN- 300
+ VSP FL AV + F Q + EF+ ++LN LH L+ N K+
Sbjct: 105 S--DCVSPEIFLSAV-GSLYPAFLKKTQQDAQEFLIYVLNELHEALKKHCRRRVNEKRTG 161
Query: 301 -----------TSIIYECFQGEL 312
TSII F+G+L
Sbjct: 162 QSCCRKVPAQETSIITRLFEGQL 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,746,192
Number of Sequences: 539616
Number of extensions: 7544728
Number of successful extensions: 48056
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 301
Number of HSP's that attempted gapping in prelim test: 42372
Number of HSP's gapped (non-prelim): 3954
length of query: 387
length of database: 191,569,459
effective HSP length: 119
effective length of query: 268
effective length of database: 127,355,155
effective search space: 34131181540
effective search space used: 34131181540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)