Query 016557
Match_columns 387
No_of_seqs 294 out of 2062
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mhs_A Ubiquitin carboxyl-term 100.0 1.4E-46 4.8E-51 385.8 14.6 231 123-377 50-333 (476)
2 3ihp_A Ubiquitin carboxyl-term 100.0 4.6E-46 1.6E-50 407.4 18.9 243 95-363 186-514 (854)
3 2y6e_A Ubiquitin carboxyl-term 100.0 2.7E-32 9.2E-37 270.4 14.3 163 191-377 8-225 (367)
4 2gfo_A Ubiquitin carboxyl-term 100.0 1.9E-31 6.6E-36 268.3 13.7 164 190-377 61-262 (396)
5 3i3t_A Ubiquitin carboxyl-term 100.0 3.9E-31 1.3E-35 258.6 12.1 165 190-377 2-220 (355)
6 3nhe_A Ubiquitin carboxyl-term 100.0 5.3E-31 1.8E-35 257.0 12.2 165 190-377 8-210 (348)
7 1nb8_A Ubiquitin carboxyl-term 100.0 1E-29 3.6E-34 251.6 16.1 160 190-377 5-165 (353)
8 2ayn_A Ubiquitin carboxyl-term 100.0 1.6E-30 5.5E-35 260.0 10.4 162 190-376 13-207 (404)
9 1vjv_A Ubiquitin carboxyl-term 100.0 5.5E-29 1.9E-33 250.7 10.3 155 191-375 24-198 (415)
10 2f1z_A Ubiquitin carboxyl-term 99.9 1E-27 3.6E-32 249.1 14.8 161 189-377 173-334 (522)
11 3c5k_A HD6, histone deacetylas 99.9 3.3E-22 1.1E-26 167.2 6.5 91 101-191 3-94 (109)
12 2uzg_A Ubiquitin carboxyl-term 99.8 2.2E-20 7.4E-25 153.2 4.2 87 102-188 3-96 (97)
13 2g45_A Ubiquitin carboxyl-term 99.7 5.7E-19 2E-23 151.6 5.4 96 98-194 8-119 (129)
14 2ida_A Hypothetical protein; z 99.5 4E-15 1.4E-19 122.4 4.7 79 103-184 3-88 (102)
15 2i50_A Ubiquitin carboxyl-term 99.5 1.1E-14 3.6E-19 124.7 4.5 85 102-186 4-111 (126)
16 2vhf_A Ubiquitin carboxyl-term 99.4 2.7E-14 9.3E-19 141.5 3.0 97 191-293 9-114 (374)
17 2xzl_A ATP-dependent helicase 84.0 0.55 1.9E-05 51.0 3.3 58 122-179 12-79 (802)
18 3mp2_A Non-structural protein 81.7 1.6 5.5E-05 39.8 5.0 64 197-289 19-82 (211)
19 3ihp_A Ubiquitin carboxyl-term 81.2 0.87 3E-05 49.8 3.6 37 128-168 57-93 (854)
20 2wjy_A Regulator of nonsense t 77.8 1 3.4E-05 49.0 2.7 58 122-179 7-74 (800)
21 2fe8_A PP1AB, ORF1AB, replicas 74.0 5.7 0.00019 38.4 6.6 70 197-290 108-177 (315)
22 1qmy_A Protease, leader protea 56.7 3.8 0.00013 35.2 1.4 31 191-221 13-44 (167)
23 1wfh_A Zinc finger (AN1-like) 48.6 9.7 0.00033 28.2 2.3 24 122-146 16-41 (64)
24 1wg2_A Zinc finger (AN1-like) 46.3 11 0.00036 27.9 2.2 24 122-146 16-41 (64)
25 1wfp_A Zinc finger (AN1-like) 43.7 11 0.00038 28.6 2.0 24 122-146 26-51 (74)
26 2lvu_A Zinc finger and BTB dom 39.4 9 0.00031 20.9 0.0 14 133-146 2-15 (26)
27 1wff_A Riken cDNA 2810002D23 p 32.8 17 0.0006 28.3 1.6 24 122-146 26-52 (85)
28 3by4_A OTU1, ubiquitin thioest 31.3 10 0.00034 34.3 0.0 35 127-164 174-208 (212)
29 3c5t_B Exendin-4, exenatide; l 29.4 21 0.00071 22.6 1.2 13 277-289 9-21 (31)
30 2yqq_A Zinc finger HIT domain- 28.9 25 0.00084 25.2 1.7 23 122-145 13-35 (56)
31 1x4w_A Hypothetical protein FL 28.7 9.1 0.00031 28.6 -0.7 24 122-146 16-44 (67)
32 4ayb_P DNA-directed RNA polyme 28.4 13 0.00043 25.8 0.1 13 132-144 2-14 (48)
33 2lvt_A Zinc finger and BTB dom 33.8 13 0.00043 20.7 0.0 23 133-155 2-25 (29)
34 2lvr_A Zinc finger and BTB dom 33.0 13 0.00046 20.6 0.0 23 133-155 3-26 (30)
35 6rxn_A Rubredoxin; electron tr 26.6 24 0.00081 24.2 1.2 13 132-144 3-15 (46)
36 4gzn_C ZFP-57, zinc finger pro 26.4 10 0.00035 26.9 -0.7 14 131-144 30-43 (60)
37 1rik_A E6APC1 peptide; E6-bind 21.5 15 0.0005 20.3 -0.6 14 133-146 2-15 (29)
38 1t5q_A Gastric inhibitory poly 20.7 49 0.0017 20.7 1.7 14 276-289 16-29 (30)
39 2jun_A Midline-1; B-BOX, TRIM, 20.4 43 0.0015 25.7 1.8 23 123-145 5-30 (101)
No 1
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1.4e-46 Score=385.76 Aligned_cols=231 Identities=21% Similarity=0.286 Sum_probs=194.1
Q ss_pred cccccCCC--CceEEecccCcccccCCCCCcccccccccCCceEEecCCCceeecCCCcccCCCCcchh-----------
Q 016557 123 FCSVSLSN--LNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI----------- 189 (387)
Q Consensus 123 ~Cs~c~s~--~nl~~CL~CG~~~cGr~~~sHa~~H~~~~~H~v~inl~t~~vyC~~c~~eV~D~sL~~i----------- 189 (387)
.|+.|... .++|+||+|| ++||+.++||+.|+.+++|+++|++.++.||||+|+++|+|+.|...
T Consensus 50 ~C~~c~~~~~~~~~~cl~cg--~~~c~~~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l~~~~~~~~~~~~~~ 127 (476)
T 3mhs_A 50 KCGTCHEINSGATFMCLQCG--FCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKYWDDVC 127 (476)
T ss_dssp BCTTTCCBCSSSEEEESSSS--CEEETTTTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSCHHHHTGGGGGGHHHHH
T ss_pred CcccccCCCCCCceEeCCCC--CCccCCchHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccHHHHHHHHhhhccchhh
Confidence 59999876 8999999999 66666799999999999999999999999999999999999865320
Q ss_pred ------------cccccccCCCCcchhhHhhHhhccchhhhhhccCCC-----cCCCCChHHHHHHHHHHHHHhccCC--
Q 016557 190 ------------RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-----YRHCKSPLVHRFGDLTRKIWHARNF-- 250 (387)
Q Consensus 190 ------------~~vGL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~-----~~~~~~~l~~~L~~L~~~l~s~~~~-- 250 (387)
+++||.|+|||||||||||+|+|+|+||++|+...+ ......++.++|..+++++|+....
T Consensus 128 ~~~~~~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 207 (476)
T 3mhs_A 128 TKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQ 207 (476)
T ss_dssp HHEECCCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--
T ss_pred hcccCCCccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccc
Confidence 135999999999999999999999999999986432 1233567999999999999985432
Q ss_pred -----CCCCchHHHHHH---HHHhhcCCCCCCCccCHHHHHHHHHHHHHHHhhcC------------CCCCcccccccce
Q 016557 251 -----KGQVSPHEFLQA---VMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT------------KKNTSIIYECFQG 310 (387)
Q Consensus 251 -----~~~vsP~~ll~~---l~~~s~~~F~~~~QqDA~EFL~~LLn~L~~el~~~------------~~~~siI~~~F~G 310 (387)
...+.|..++.. +++. .+.|.++.||||||||++||+.||+++... ....++|+++|+|
T Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G 286 (476)
T 3mhs_A 208 ASSSSTSTNRQTGFIYLLTCAWKI-NQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEG 286 (476)
T ss_dssp ------CCCSCHHHHHHHHHHHHH-CGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCE
T ss_pred cccccccccCcchHHHHHHHHHHh-ccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecce
Confidence 124566665554 4455 589999999999999999999999987531 2346799999999
Q ss_pred EEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCccc-eeeecceeeeecCCCCCChhHHhhhcCcccc
Q 016557 311 ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTE-TSRMPFLMLGLDLPPPPLFKDVMEKNIIPQL 377 (387)
Q Consensus 311 ~l~~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~s-~~~epFl~LSLdLP~~p~fkd~le~n~iPqv 377 (387)
+++++++|..|+ ..+ ++.+||++|+|+||+...+.++++....|++
T Consensus 287 ~l~~~~~C~~C~---------------------~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~ 333 (476)
T 3mhs_A 287 SLESSIVCPGCQ---------------------NNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQ 333 (476)
T ss_dssp EEEEEEECTTTC---------------------CCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEE
T ss_pred EEEEEEEECCCC---------------------CeeCCcccchhhhccchhhhhHHHHHHHHhcChhh
Confidence 999999999997 454 5689999999999999999999999888887
No 2
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.6e-46 Score=407.36 Aligned_cols=243 Identities=18% Similarity=0.218 Sum_probs=201.4
Q ss_pred CCcCcCCCCCCCchhhhcccccC--CCC-CccccccCCCCceEEecccCcccccCCC------CCcccccccccCCceEE
Q 016557 95 RSRLVEVRRDCPYLDTVNRQVLD--FDF-EKFCSVSLSNLNVYACLVCGKYYQGRGQ------KSHAYTHSLEAGHHVYI 165 (387)
Q Consensus 95 ~~~~~~~~~~c~~l~ti~~~~Ld--fd~-ek~Cs~c~s~~nl~~CL~CG~~~cGr~~------~sHa~~H~~~~~H~v~i 165 (387)
..+....+..|+|+.++.+.... ... ...|+.|+...|+|+||+||.++|||.. ++||+.|+.+++|+++|
T Consensus 186 ~~w~~~~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~ 265 (854)
T 3ihp_A 186 QAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAV 265 (854)
T ss_dssp ------CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHCCCEEE
T ss_pred HhhcCccCCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHHHhhcCCcEEE
Confidence 33445556889999877543311 111 2489999999999999999999998865 89999999999999999
Q ss_pred ecCC-----CceeecCCCcccCCCCcchh------------------------------------------------ccc
Q 016557 166 NLRT-----EKVYCLPDGYEINDPSLEDI------------------------------------------------RHV 192 (387)
Q Consensus 166 nl~t-----~~vyC~~c~~eV~D~sL~~i------------------------------------------------~~v 192 (387)
++.| ++||||+|+++|.|+.|.++ .++
T Consensus 266 ~l~t~~~~~~~~~cy~~~~~v~~~~l~~~l~~~gi~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l~p~~~~G~~ 345 (854)
T 3ihp_A 266 KLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYT 345 (854)
T ss_dssp ETTCCBTTBCCEEETTTTEECBCTTHHHHHHHTTCCC-----------------------------------CCCSTTCC
T ss_pred EcCCcCCCCCeEEEccCCCeeeCccHHHHHHHhCcccccccccchhhhhhhhhhccccchhhhhcccCcccccccCCCcc
Confidence 9999 99999999999988755431 124
Q ss_pred ccccCCCCcchhhHhhHhhccchhhhhhccCC------CcCCCCChHHHHHHHHHHHHHhcc------------------
Q 016557 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE------NYRHCKSPLVHRFGDLTRKIWHAR------------------ 248 (387)
Q Consensus 193 GL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~------~~~~~~~~l~~~L~~L~~~l~s~~------------------ 248 (387)
||.|+|||||||||||+|+++|+||++|+... .......++.++|.+|++.||+++
T Consensus 346 GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~ 425 (854)
T 3ihp_A 346 GIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQK 425 (854)
T ss_dssp CBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC------------------
T ss_pred ceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999999999999999999999999998532 122345689999999999999754
Q ss_pred CCCCCCchHHHHHHHHHhhcCCCCCCCccCHHHHHHHHHHHHHHHhhcCCCCCcccccccceEEEEEEEccCCCCCCCCC
Q 016557 249 NFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQ 328 (387)
Q Consensus 249 ~~~~~vsP~~ll~~l~~~s~~~F~~~~QqDA~EFL~~LLn~L~~el~~~~~~~siI~~~F~G~l~~~~~C~~c~~~~~~~ 328 (387)
.++..++|..|++.++.. .+.|.++.||||+|||++||+.|+++++. .++|.++|+|+++++++|..|+
T Consensus 426 ~~~~~isP~~f~~~l~~~-~~~F~~~~QQDA~EFl~~LLd~L~~el~~----~s~i~~lF~G~l~s~i~C~~C~------ 494 (854)
T 3ihp_A 426 EVQDGIAPRMFKALIGKG-HPEFSTNRQQDAQEFFLHLINMVERNCRS----SENPNEVFRFLVEEKIKCLATE------ 494 (854)
T ss_dssp ---CCBCCHHHHHHHTTT-CTTTTSSSCCBHHHHHHHHHHHHHHTCTT----SCCGGGGTCEEEEEEEEETTTT------
T ss_pred cCCCccChHHHHHHHhhh-ccccccccccCHHHHHHHHHHHHHHHhcc----cCCchhhcCceEEEEEEecCCC------
Confidence 245689999999999887 59999999999999999999999998843 5789999999999999999998
Q ss_pred CCCCCCCCCCCCCCCccceeeecceeeeecCCCCC
Q 016557 329 NTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363 (387)
Q Consensus 329 ~~~~~~~~~~~~~~~~~s~~~epFl~LSLdLP~~p 363 (387)
..+.+.++|++|+|+||..+
T Consensus 495 ---------------~vs~t~e~F~~LsL~Ip~~~ 514 (854)
T 3ihp_A 495 ---------------KVKYTQRVDYIMQLPVPMDA 514 (854)
T ss_dssp ---------------EEEEEEEEESEEEECCCGGG
T ss_pred ---------------CEeEEeeeceEEEeeCCccc
Confidence 78999999999999999754
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.98 E-value=2.7e-32 Score=270.44 Aligned_cols=163 Identities=28% Similarity=0.466 Sum_probs=140.1
Q ss_pred ccccccCCCCcchhhHhhHhhccchhhhhhccCCCc--------CCCCChHHHHHHHHHHHHHhccCCCCCCchHHHHHH
Q 016557 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY--------RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQA 262 (387)
Q Consensus 191 ~vGL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~--------~~~~~~l~~~L~~L~~~l~s~~~~~~~vsP~~ll~~ 262 (387)
++||.|+|||||||||||+|+|+|+||++|+..... ......++.+|..|++.||++. ...++|..|+.+
T Consensus 8 ~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~P~~~~~~ 85 (367)
T 2y6e_A 8 LCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR--DAHVAPRMFKTQ 85 (367)
T ss_dssp CCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS--CSEECCHHHHHH
T ss_pred CcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC--CCCcCHHHHHHH
Confidence 579999999999999999999999999999864311 1234579999999999999875 568999999999
Q ss_pred HHHhhcCCCCCCCccCHHHHHHHHHHHHHHHhhcCC----------------------------CCCcccccccceEEEE
Q 016557 263 VMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------------------------KNTSIIYECFQGELEV 314 (387)
Q Consensus 263 l~~~s~~~F~~~~QqDA~EFL~~LLn~L~~el~~~~----------------------------~~~siI~~~F~G~l~~ 314 (387)
++.. .+.|.++.||||||||++||+.||++++... ...++|.++|+|++++
T Consensus 86 l~~~-~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s 164 (367)
T 2y6e_A 86 VGRF-APQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKS 164 (367)
T ss_dssp HHHH-CGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEE
T ss_pred HHHh-hhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEee
Confidence 9987 5899999999999999999999999986321 1357899999999999
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCccceeeecceeeeecCCCCC-------------------ChhHHhhhcCcc
Q 016557 315 VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP-------------------LFKDVMEKNIIP 375 (387)
Q Consensus 315 ~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~s~~~epFl~LSLdLP~~p-------------------~fkd~le~n~iP 375 (387)
+++|..|+ ..+.+.+||++|+|+||... .+.++++...-|
T Consensus 165 ~~~C~~C~---------------------~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~ 223 (367)
T 2y6e_A 165 TLVCPECA---------------------KVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTM 223 (367)
T ss_dssp EEECTTTC---------------------CEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSC
T ss_pred eEEeCCCC---------------------CEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhccc
Confidence 99999998 78899999999999999743 477888888877
Q ss_pred cc
Q 016557 376 QL 377 (387)
Q Consensus 376 qv 377 (387)
++
T Consensus 224 E~ 225 (367)
T 2y6e_A 224 ET 225 (367)
T ss_dssp EE
T ss_pred cc
Confidence 76
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.97 E-value=1.9e-31 Score=268.27 Aligned_cols=164 Identities=23% Similarity=0.357 Sum_probs=142.5
Q ss_pred cccccccCCCCcchhhHhhHhhccchhhhhhccCCC--------cCCCCChHHHHHHHHHHHHHhccCCCCCCchHHHHH
Q 016557 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN--------YRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQ 261 (387)
Q Consensus 190 ~~vGL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~--------~~~~~~~l~~~L~~L~~~l~s~~~~~~~vsP~~ll~ 261 (387)
.++||.|+|||||||||||+|+++|+||+||+.... .......++.+|..|++.||++. ...++|..|+.
T Consensus 61 g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~--~~~i~P~~f~~ 138 (396)
T 2gfo_A 61 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ--YRYISPKDFKI 138 (396)
T ss_dssp TCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC--EEEECCHHHHH
T ss_pred CcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC--CceECHHHHHH
Confidence 357999999999999999999999999999986431 11234678999999999999875 56899999999
Q ss_pred HHHHhhcCCCCCCCccCHHHHHHHHHHHHHHHhhcCC----------------------------CCCcccccccceEEE
Q 016557 262 AVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------------------------KNTSIIYECFQGELE 313 (387)
Q Consensus 262 ~l~~~s~~~F~~~~QqDA~EFL~~LLn~L~~el~~~~----------------------------~~~siI~~~F~G~l~ 313 (387)
+++.. ++.|.++.||||||||++||+.||+++.... ...++|.++|+|+++
T Consensus 139 ~l~~~-~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 139 TIGKI-NDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHH-CGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHh-chhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 99987 6899999999999999999999999986321 236789999999999
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCCCCCCCCccceeeecceeeeecCCCCC--ChhHHhhhcCcccc
Q 016557 314 VVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP--LFKDVMEKNIIPQL 377 (387)
Q Consensus 314 ~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~s~~~epFl~LSLdLP~~p--~fkd~le~n~iPqv 377 (387)
++++|..|+ ..+.+.+||++|+|+||..+ .+.++++...-|++
T Consensus 218 s~i~C~~C~---------------------~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~ 262 (396)
T 2gfo_A 218 STVQCLTCH---------------------KKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK 262 (396)
T ss_dssp EEEEETTTC---------------------CEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEE
T ss_pred EEEEeCCCC---------------------ceecccccceeeeecccccccCCHHHHHHHhCCccc
Confidence 999999998 78899999999999999853 68999998888876
No 5
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.97 E-value=3.9e-31 Score=258.59 Aligned_cols=165 Identities=25% Similarity=0.363 Sum_probs=138.5
Q ss_pred cccccccCCCCcchhhHhhHhhccchhhhhhccCCC-----cCCCCChHHHHHHHHHHHHHhccCCCCCCchHHHHHHHH
Q 016557 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-----YRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVM 264 (387)
Q Consensus 190 ~~vGL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~-----~~~~~~~l~~~L~~L~~~l~s~~~~~~~vsP~~ll~~l~ 264 (387)
+++||.|+|||||||||||+|+++|+||++++.... ......++..+|..|++.||++.. ...++|..|+.++.
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDS-CEAVNPTRFRAVFQ 80 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSS-CCCBCCHHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHH
Confidence 468999999999999999999999999999986431 112345799999999999998752 35799999999998
Q ss_pred HhhcCCCCCCCccCHHHHHHHHHHHHHHHhhcCC-------------------------------------------CCC
Q 016557 265 KASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------------------------------------------KNT 301 (387)
Q Consensus 265 ~~s~~~F~~~~QqDA~EFL~~LLn~L~~el~~~~-------------------------------------------~~~ 301 (387)
.. .+.|.++.||||||||.+||+.||++++... ...
T Consensus 81 ~~-~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T 3i3t_A 81 KY-VPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED 159 (355)
T ss_dssp HH-CGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCC
T ss_pred Hh-ChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccC
Confidence 87 6999999999999999999999999986321 124
Q ss_pred cccccccceEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCccceeeecceeeeecCCCCC------ChhHHhhhcCcc
Q 016557 302 SIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP------LFKDVMEKNIIP 375 (387)
Q Consensus 302 siI~~~F~G~l~~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~s~~~epFl~LSLdLP~~p------~fkd~le~n~iP 375 (387)
++|.++|+|++.+.++|..|+ ..+.+.++|++|+|+||... .+.++++...-|
T Consensus 160 s~i~~~F~g~~~~~~~C~~C~---------------------~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~ 218 (355)
T 3i3t_A 160 SKIVDLFVGQLKSCLKCQACG---------------------YRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKE 218 (355)
T ss_dssp SHHHHHHCEEEEEEEEETTTC---------------------CEEEEEEEESSEEECCCC-------CBHHHHHHHHHCC
T ss_pred CcccccccEEEEeeEEeCCCC---------------------CCceeeccceeecccCCccccccCccCHHHHHHHhCCc
Confidence 679999999999999999998 78899999999999999854 788999887777
Q ss_pred cc
Q 016557 376 QL 377 (387)
Q Consensus 376 qv 377 (387)
++
T Consensus 219 e~ 220 (355)
T 3i3t_A 219 EE 220 (355)
T ss_dssp EE
T ss_pred cc
Confidence 66
No 6
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.97 E-value=5.3e-31 Score=256.96 Aligned_cols=165 Identities=26% Similarity=0.372 Sum_probs=141.1
Q ss_pred cccccccCCCCcchhhHhhHhhccchhhhhhccCCCc------CCCCChHHHHHHHHHHHHHhccCCCCCCchHHHHHHH
Q 016557 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY------RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAV 263 (387)
Q Consensus 190 ~~vGL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~------~~~~~~l~~~L~~L~~~l~s~~~~~~~vsP~~ll~~l 263 (387)
+++||.|+|||||||||||+|+++|+||++++..... .....++.++|..|++.||... ....++|..|+.++
T Consensus 8 g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~~~~p~~~~~~l 86 (348)
T 3nhe_A 8 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSS-PNDVVSPSEFKTQI 86 (348)
T ss_dssp SCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCC-TTCEECCHHHHHHH
T ss_pred CCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCC-CCCccCHHHHHHHH
Confidence 4579999999999999999999999999999864311 1234579999999999999532 36789999999999
Q ss_pred HHhhcCCCCCCCccCHHHHHHHHHHHHHHHhhcC----------------------------CCCCcccccccceEEEEE
Q 016557 264 MKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT----------------------------KKNTSIIYECFQGELEVV 315 (387)
Q Consensus 264 ~~~s~~~F~~~~QqDA~EFL~~LLn~L~~el~~~----------------------------~~~~siI~~~F~G~l~~~ 315 (387)
+.. .+.|.++.||||||||.+||+.||++++.. ....++|.++|+|++.++
T Consensus 87 ~~~-~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~ 165 (348)
T 3nhe_A 87 QRY-APRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSS 165 (348)
T ss_dssp HHH-SGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEE
T ss_pred HHh-hhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEEEE
Confidence 988 589999999999999999999999998632 123477999999999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCCCCCccceeeecceeeeecCCCCC----ChhHHhhhcCcccc
Q 016557 316 KEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP----LFKDVMEKNIIPQL 377 (387)
Q Consensus 316 ~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~s~~~epFl~LSLdLP~~p----~fkd~le~n~iPqv 377 (387)
++|..|+ ..+.+.+||++|+|+||... .+.++++...-+++
T Consensus 166 ~~C~~C~---------------------~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~ 210 (348)
T 3nhe_A 166 LTCTDCG---------------------YCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDV 210 (348)
T ss_dssp EEETTTC---------------------CEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEE
T ss_pred EEcCCCC---------------------CEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceE
Confidence 9999998 78899999999999999854 68889888777765
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.96 E-value=1e-29 Score=251.62 Aligned_cols=160 Identities=14% Similarity=0.156 Sum_probs=139.3
Q ss_pred cccccccCCCCcchhhHhhHhhccchhhhhhccCCCc-CCCCChHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhhc
Q 016557 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (387)
Q Consensus 190 ~~vGL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~-~~~~~~l~~~L~~L~~~l~s~~~~~~~vsP~~ll~~l~~~s~ 268 (387)
+++||.|+|||||||||||+|+|+|+||++++..... .....++.++|+.||..||.+. ..++|..|+..+. +
T Consensus 5 g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~---~ 78 (353)
T 1nb8_A 5 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG---W 78 (353)
T ss_dssp SCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHHT---C
T ss_pred CCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHhhcC---CCCCCHHHHhhcC---C
Confidence 4679999999999999999999999999999764321 2234578999999999999863 5789999998873 4
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHHHhhcCCCCCcccccccceEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCcccee
Q 016557 269 KRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS 348 (387)
Q Consensus 269 ~~F~~~~QqDA~EFL~~LLn~L~~el~~~~~~~siI~~~F~G~l~~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~s~~ 348 (387)
+.|.++.||||||||.+||+.|+++++.. ...++|.++|+|+++++++|..|+ ..+.+
T Consensus 79 ~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-~~~s~i~~~F~g~~~~~i~C~~C~---------------------~~s~~ 136 (353)
T 1nb8_A 79 ETLDSFMQHDVQELCRVLLDNVENKMKGT-CVEGTIPKLFRGKMVSYIQCKEVD---------------------YRSDR 136 (353)
T ss_dssp CBTTTTTTSCHHHHHHHHHHHHHHHTTTS-TTTTHHHHHHCEEEEEEEEESSSC---------------------CEEEE
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhcCC-CccchhhhhceeEEEEEEEeccCC---------------------Ceece
Confidence 68999999999999999999999988643 346789999999999999999998 78889
Q ss_pred eecceeeeecCCCCCChhHHhhhcCcccc
Q 016557 349 RMPFLMLGLDLPPPPLFKDVMEKNIIPQL 377 (387)
Q Consensus 349 ~epFl~LSLdLP~~p~fkd~le~n~iPqv 377 (387)
.++|++|+|+||....+.+++...+.|+.
T Consensus 137 ~e~f~~LsL~i~~~~~l~~~L~~~~~~E~ 165 (353)
T 1nb8_A 137 REDYYDIQLSIKGKKNIFESFVDYVAVEQ 165 (353)
T ss_dssp EEEESCEEECCTTCSBHHHHHHHHTCCEE
T ss_pred eeeeEEEEEEECCCcchHHHHHHhhCccc
Confidence 99999999999999999999998888776
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.96 E-value=1.6e-30 Score=260.02 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=136.3
Q ss_pred cccccccCCCCcchhhHhhHhhccchhhhhhccCCCc--CC----CCChHHHHHHHHHHHHHhccCCCCCCchHHHHHHH
Q 016557 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY--RH----CKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAV 263 (387)
Q Consensus 190 ~~vGL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~--~~----~~~~l~~~L~~L~~~l~s~~~~~~~vsP~~ll~~l 263 (387)
..+||.|+|||||||||||+|+|+|+||++|+..... .. ...+++++|+.||+.||.+ ...++|..|+.++
T Consensus 13 ~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~---~~~v~P~~~~~~l 89 (404)
T 2ayn_A 13 LPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKT---SSSIPPIILLQFL 89 (404)
T ss_dssp CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHH---CSEECCHHHHHHH
T ss_pred CCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcC---CCcCChHHHHHHH
Confidence 3579999999999999999999999999999875432 11 1347999999999999987 3689999999999
Q ss_pred HHhhcCCCC------CCCccCHHHHHHHHHHHHHHHhhcCC------------------CCCcccccccceEEEEEEEcc
Q 016557 264 MKASKKRFR------IGVQSNPVEFMSWLLNTLHSDLRNTK------------------KNTSIIYECFQGELEVVKEIP 319 (387)
Q Consensus 264 ~~~s~~~F~------~~~QqDA~EFL~~LLn~L~~el~~~~------------------~~~siI~~~F~G~l~~~~~C~ 319 (387)
+.. .+.|. ++.||||||||++||+.||+++.... ...++|+++|+|+++++++|.
T Consensus 90 ~~~-~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~ 168 (404)
T 2ayn_A 90 HMA-FPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCT 168 (404)
T ss_dssp HHH-CGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEES
T ss_pred HHh-CchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEec
Confidence 987 58887 58999999999999999999986432 245799999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcc--ceeeecceeeeecCCCC-CChhHHhhhcCccc
Q 016557 320 KNTISGNDQNTEKGSDGGDDHDNITT--ETSRMPFLMLGLDLPPP-PLFKDVMEKNIIPQ 376 (387)
Q Consensus 320 ~c~~~~~~~~~~~~~~~~~~~~~~~~--s~~~epFl~LSLdLP~~-p~fkd~le~n~iPq 376 (387)
.|+ .. +.+.+||++|+|+||.. ..+.++++...-.+
T Consensus 169 ~C~---------------------~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~ 207 (404)
T 2ayn_A 169 ESE---------------------EEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEE 207 (404)
T ss_dssp SSC---------------------CCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEEC
T ss_pred CCC---------------------CccCceeeccCceEEeecCCCcccHHHHHHHhcccc
Confidence 998 34 57899999999999986 57888888765433
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.95 E-value=5.5e-29 Score=250.67 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=133.2
Q ss_pred ccccccCCCCcchhhHhhHhhccchhhhhhccCCCcCCC----------CChHHHHHHHHHHHHHhccCCCCCCchHHHH
Q 016557 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC----------KSPLVHRFGDLTRKIWHARNFKGQVSPHEFL 260 (387)
Q Consensus 191 ~vGL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~~~~----------~~~l~~~L~~L~~~l~s~~~~~~~vsP~~ll 260 (387)
.+||.|+|||||||||||+|+++|+||++|+........ ..+++++|+.||..||.+. ...++|..|+
T Consensus 24 ~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~v~p~~~~ 101 (415)
T 1vjv_A 24 PVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS--FKSVLPVVLL 101 (415)
T ss_dssp CCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---CCEECCHHHH
T ss_pred CCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCC--CCccCHHHHH
Confidence 579999999999999999999999999999875432211 2379999999999999864 5789999999
Q ss_pred HHHHHhhcCCCC-------CCCccCHHHHHHHHHHHHHHHhhcCCCCCcccccccceEEEEEEEccCCCCCCCCCCCCCC
Q 016557 261 QAVMKASKKRFR-------IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKG 333 (387)
Q Consensus 261 ~~l~~~s~~~F~-------~~~QqDA~EFL~~LLn~L~~el~~~~~~~siI~~~F~G~l~~~~~C~~c~~~~~~~~~~~~ 333 (387)
.+++.. .+.|. ++.||||+|||.+||+.|++++.. ++|.++|+ +++++++|..|+
T Consensus 102 ~~l~~~-~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-----~~i~~~F~-~~~~~~~C~~C~----------- 163 (415)
T 1vjv_A 102 NTLRKC-YPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-----KFSEDFRI-QFKTTIKDTAND----------- 163 (415)
T ss_dssp HHHHHH-CGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-----HHHTTTCE-EEEEEEEETTEE-----------
T ss_pred HHHHHh-CchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-----chHHHHHH-hheEEEEECCCC-----------
Confidence 999988 48898 899999999999999999999853 78999999 999999999997
Q ss_pred CCCCCCCCCCccc--eeeecceeeeecCCCC-CChhHHhhhcCcc
Q 016557 334 SDGGDDHDNITTE--TSRMPFLMLGLDLPPP-PLFKDVMEKNIIP 375 (387)
Q Consensus 334 ~~~~~~~~~~~~s--~~~epFl~LSLdLP~~-p~fkd~le~n~iP 375 (387)
..+ .+.++|++|+|+||.. ..+.++++...-.
T Consensus 164 ----------~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e 198 (415)
T 1vjv_A 164 ----------NDITVKENESDSKLQCHISGTTNFMRNGLLEGLNE 198 (415)
T ss_dssp ----------EEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEE
T ss_pred ----------CCccccccccceeeeeccccccchHHHHHHHHhhh
Confidence 443 6899999999999986 4688888765433
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=249.07 Aligned_cols=161 Identities=14% Similarity=0.154 Sum_probs=137.2
Q ss_pred hcccccccCCCCcchhhHhhHhhccchhhhhhccCCCc-CCCCChHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhh
Q 016557 189 IRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKAS 267 (387)
Q Consensus 189 i~~vGL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~-~~~~~~l~~~L~~L~~~l~s~~~~~~~vsP~~ll~~l~~~s 267 (387)
.+++||.|+|||||||||||+|+++|+||++++..... .....++.++|+.||..||.+. ..++|..|+..+.
T Consensus 173 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~--- 246 (522)
T 2f1z_A 173 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG--- 246 (522)
T ss_dssp TSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHHCS---SCBCCTTHHHHTC---
T ss_pred CCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCCcccchHHHHHHHHHHHHhcCC---CccCcHHHHhhcC---
Confidence 45679999999999999999999999999998764321 2234578999999999999863 5789999988763
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHHHHhhcCCCCCcccccccceEEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCccce
Q 016557 268 KKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTET 347 (387)
Q Consensus 268 ~~~F~~~~QqDA~EFL~~LLn~L~~el~~~~~~~siI~~~F~G~l~~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~s~ 347 (387)
++.|.++.||||||||++||+.|+++++.. ...++|.++|+|+++++++|..|+ ..+.
T Consensus 247 ~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-~~~s~i~~lF~G~~~s~i~C~~C~---------------------~~s~ 304 (522)
T 2f1z_A 247 WETLDSFMQHDVQELCRVLLDNVENKMKGT-CVEGTIPKLFRGKMVSYIQCKEVD---------------------YRSD 304 (522)
T ss_dssp CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-TTTTHHHHHHCEEEEEEECCSSSC---------------------CCCC
T ss_pred CccCCCcccccHHHHHHHHHHHHHhhccCC-ccccchhhheeEEEEEEEEcCCCC---------------------ceee
Confidence 368999999999999999999999998643 346789999999999999999998 6788
Q ss_pred eeecceeeeecCCCCCChhHHhhhcCcccc
Q 016557 348 SRMPFLMLGLDLPPPPLFKDVMEKNIIPQL 377 (387)
Q Consensus 348 ~~epFl~LSLdLP~~p~fkd~le~n~iPqv 377 (387)
+.++|++|+|+||....+.++++..+.|+.
T Consensus 305 ~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~ 334 (522)
T 2f1z_A 305 RREDYYDIQLSIKGKKNIFESFVDYVAVEQ 334 (522)
T ss_dssp EEEEESCEEECCTTCCBHHHHHHHHTCEEE
T ss_pred eeeeeEEEEEEeCCcccchHHHHHhhceee
Confidence 999999999999999999999998887776
No 11
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.86 E-value=3.3e-22 Score=167.18 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=84.8
Q ss_pred CCCCCCchhhhccccc-CCCCCccccccCCCCceEEecccCcccccCCCCCcccccccccCCceEEecCCCceeecCCCc
Q 016557 101 VRRDCPYLDTVNRQVL-DFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGY 179 (387)
Q Consensus 101 ~~~~c~~l~ti~~~~L-dfd~ek~Cs~c~s~~nl~~CL~CG~~~cGr~~~sHa~~H~~~~~H~v~inl~t~~vyC~~c~~ 179 (387)
....||||++|++... ++++.+.|+.|.+..|+|+||+||+++|||+.++||+.|+.+++|+++|++.++.||||+|++
T Consensus 3 ~~~~C~Hl~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~ 82 (109)
T 3c5k_A 3 PLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQA 82 (109)
T ss_dssp CBSCCTTGGGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTE
T ss_pred CCCCCcCcccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCC
Confidence 4568999999988664 678889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhcc
Q 016557 180 EINDPSLEDIRH 191 (387)
Q Consensus 180 eV~D~sL~~i~~ 191 (387)
+|.+++|.+++.
T Consensus 83 ~V~~~~L~d~~~ 94 (109)
T 3c5k_A 83 YVHHQALLDVKN 94 (109)
T ss_dssp EBCCGGGHHHHH
T ss_pred EEecccccChHH
Confidence 999999998863
No 12
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.79 E-value=2.2e-20 Score=153.19 Aligned_cols=87 Identities=31% Similarity=0.446 Sum_probs=77.6
Q ss_pred CCCCCchhhhccccc---CCCCCccccccC-CCCceEEecc--cCcccccCCCCCcccccccccCCceEEecCCCceeec
Q 016557 102 RRDCPYLDTVNRQVL---DFDFEKFCSVSL-SNLNVYACLV--CGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCL 175 (387)
Q Consensus 102 ~~~c~~l~ti~~~~L---dfd~ek~Cs~c~-s~~nl~~CL~--CG~~~cGr~~~sHa~~H~~~~~H~v~inl~t~~vyC~ 175 (387)
+..||||+++.+... .++..+.|+.|. ...|+|+||+ ||.++|||+.++||+.|+.+++|+++|++.+++||||
T Consensus 3 ~~~C~Hl~~~~~~~~~~~~~~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy 82 (97)
T 2uzg_A 3 RNHCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCY 82 (97)
T ss_dssp CCSCHHHHHSCCCCHHHHHHHTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEET
T ss_pred CCCCcCcchhcccCcccccCCCCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEEC
Confidence 468999999886543 345677999999 8889999999 9999999999999999999999999999999999999
Q ss_pred CCCccc-CCCCcch
Q 016557 176 PDGYEI-NDPSLED 188 (387)
Q Consensus 176 ~c~~eV-~D~sL~~ 188 (387)
+|+++| .|+.|..
T Consensus 83 ~cdd~V~~d~~L~~ 96 (97)
T 2uzg_A 83 ACSKEVFLDRKLGT 96 (97)
T ss_dssp TTTEEECCCSCCCC
T ss_pred CCCcEeecCccccc
Confidence 999998 6887753
No 13
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.75 E-value=5.7e-19 Score=151.59 Aligned_cols=96 Identities=26% Similarity=0.257 Sum_probs=79.4
Q ss_pred CcCCCCCCCchhhhccc----ccCCCCCccccccCCCCceEEecccCcccccCCC------CCcccccccccCCceEEec
Q 016557 98 LVEVRRDCPYLDTVNRQ----VLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQ------KSHAYTHSLEAGHHVYINL 167 (387)
Q Consensus 98 ~~~~~~~c~~l~ti~~~----~Ldfd~ek~Cs~c~s~~nl~~CL~CG~~~cGr~~------~sHa~~H~~~~~H~v~inl 167 (387)
..+.+..|+|++++.+. .++.+.. .|+.|.+..|+|+||+||.++|||.. ++||+.|+.+++|+++|++
T Consensus 8 ~~e~~~~C~h~~~l~q~~~~~~~~~~~~-~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l 86 (129)
T 2g45_A 8 DGEVRQVSKHAFSLKQLDNPARIPPCGW-KCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKL 86 (129)
T ss_dssp ---CCEECTTTTTCCCCSSCCCCCCCBC-CCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEET
T ss_pred cCCCCCCCCCcCcccccccccccCCCCC-cCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEEC
Confidence 34455689999988764 3444544 59999999999999999999999986 8999999999999999999
Q ss_pred CC-----CceeecCCCcccCCCCcchh-ccccc
Q 016557 168 RT-----EKVYCLPDGYEINDPSLEDI-RHVGL 194 (387)
Q Consensus 168 ~t-----~~vyC~~c~~eV~D~sL~~i-~~vGL 194 (387)
.| +.||||+|+++|.|+.|..+ .+.|+
T Consensus 87 ~t~~~~~~~vwcY~cd~~V~dp~L~~hl~~fgi 119 (129)
T 2g45_A 87 GTITPDGADVYSYDEDDMVLDPSLAEHLSHFGI 119 (129)
T ss_dssp TCCBTTBCCEEETTTTEEEECTTHHHHHHTTTC
T ss_pred CCCCCCCCeEEECCCCCEeECccHHHHHHHHCC
Confidence 99 69999999999999988664 34453
No 14
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.53 E-value=4e-15 Score=122.36 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=66.8
Q ss_pred CCCCchhhhcccccCCCCCccccccCCCC----ceEEecccCcccccCC-CCCcccccccccCCceEEecC--CCceeec
Q 016557 103 RDCPYLDTVNRQVLDFDFEKFCSVSLSNL----NVYACLVCGKYYQGRG-QKSHAYTHSLEAGHHVYINLR--TEKVYCL 175 (387)
Q Consensus 103 ~~c~~l~ti~~~~Ldfd~ek~Cs~c~s~~----nl~~CL~CG~~~cGr~-~~sHa~~H~~~~~H~v~inl~--t~~vyC~ 175 (387)
..||||..+....- ....|+.|.... |+|+||+||.++|||+ .++||+.|+.+++|+|.+.+. +..||||
T Consensus 3 ~~C~Hl~~~~~~~p---~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY 79 (102)
T 2ida_A 3 MGCRHVAGIRTVTP---SALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCY 79 (102)
T ss_dssp CCCGGGGGCCCCCC---SSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEET
T ss_pred CcCcCccccccCCC---CCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEc
Confidence 35999988765432 145799998775 9999999999999998 799999999999999887766 5789999
Q ss_pred CCCcccCCC
Q 016557 176 PDGYEINDP 184 (387)
Q Consensus 176 ~c~~eV~D~ 184 (387)
.|+.+|.++
T Consensus 80 ~cd~~V~~p 88 (102)
T 2ida_A 80 VDEVMFDLS 88 (102)
T ss_dssp TTTEEEECT
T ss_pred CCCcEEECc
Confidence 999999775
No 15
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=124.67 Aligned_cols=85 Identities=25% Similarity=0.344 Sum_probs=67.3
Q ss_pred CCCCCchhhh-cc----cccCCCCCccccccCC--------------CCceEEecccCcccccCC-CCCcccccccc---
Q 016557 102 RRDCPYLDTV-NR----QVLDFDFEKFCSVSLS--------------NLNVYACLVCGKYYQGRG-QKSHAYTHSLE--- 158 (387)
Q Consensus 102 ~~~c~~l~ti-~~----~~Ldfd~ek~Cs~c~s--------------~~nl~~CL~CG~~~cGr~-~~sHa~~H~~~--- 158 (387)
...|+|+..+ +. ..+.-.....|+.|.. ..++|+||+||.++|||. .++||+.|+.+
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~~ 83 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRS 83 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCCS
T ss_pred CCCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCcCC
Confidence 4679999643 21 1111112246888875 699999999999999997 68999999998
Q ss_pred cCCceEEecCCCceeecCCCcccCCCCc
Q 016557 159 AGHHVYINLRTEKVYCLPDGYEINDPSL 186 (387)
Q Consensus 159 ~~H~v~inl~t~~vyC~~c~~eV~D~sL 186 (387)
++|+++|++.+..||||.|+.+|.++..
T Consensus 84 t~H~l~~~l~t~~vwCY~cd~~V~~~~~ 111 (126)
T 2i50_A 84 EPHCLVLSLDNWSVWCYVCDNEVQYCSS 111 (126)
T ss_dssp SCCCEEEETTTCCEEETTTTEEECCCTT
T ss_pred CCCcEEEECCCCeEEeCCCCcEEEcCcc
Confidence 8999999999999999999999987643
No 16
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.43 E-value=2.7e-14 Score=141.46 Aligned_cols=97 Identities=10% Similarity=0.160 Sum_probs=75.3
Q ss_pred ccccccCCCCcchhhHhhHhhccchhhhhhccCCCcCCC-C--ChHHHHH-HHHHHHHHhccCCCCCCchHHHHHHHHHh
Q 016557 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC-K--SPLVHRF-GDLTRKIWHARNFKGQVSPHEFLQAVMKA 266 (387)
Q Consensus 191 ~vGL~NlGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~~~~-~--~~l~~~L-~~L~~~l~s~~~~~~~vsP~~ll~~l~~~ 266 (387)
..||.|+||||||||.||+|+.+|.+++.++........ . ..+...| ..|+..|-. ..+.|..|+..+++.
T Consensus 9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk-----~~~~P~~~l~~LR~~ 83 (374)
T 2vhf_A 9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI-----YGYVCATKIMKLRKI 83 (374)
T ss_dssp SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH-----TSEECHHHHHHHHHH
T ss_pred CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh-----cCCCcHHHHHHHHHH
Confidence 359999999999999999999999999999876422211 1 1366666 566666642 689999999999988
Q ss_pred hcCCCC-----CCCccCHHHHHHHHHHHHHHH
Q 016557 267 SKKRFR-----IGVQSNPVEFMSWLLNTLHSD 293 (387)
Q Consensus 267 s~~~F~-----~~~QqDA~EFL~~LLn~L~~e 293 (387)
. |+|. +++||||.|||..||+.|...
T Consensus 84 ~-pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ 114 (374)
T 2vhf_A 84 L-EKVEAASGFTSEEKDPEEFLNILFHHILRV 114 (374)
T ss_dssp H-HHHC--------CCCHHHHHHHHHTTTTCC
T ss_pred h-HHHhcccCCCccccCHHHHHHHHHHHHhhc
Confidence 5 6664 488999999999999999875
No 17
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=83.96 E-value=0.55 Score=50.99 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=42.3
Q ss_pred ccccccC--CCCceEEecccCcccc-cCC--CCCcccccccccCCceEE-e----cCCCceeecCCCc
Q 016557 122 KFCSVSL--SNLNVYACLVCGKYYQ-GRG--QKSHAYTHSLEAGHHVYI-N----LRTEKVYCLPDGY 179 (387)
Q Consensus 122 k~Cs~c~--s~~nl~~CL~CG~~~c-Gr~--~~sHa~~H~~~~~H~v~i-n----l~t~~vyC~~c~~ 179 (387)
..|.-|. ....|.-|+.|+|.|| |++ ..||...|-..++|.-.. . ++...+-||.|+.
T Consensus 12 ~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~ 79 (802)
T 2xzl_A 12 NSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGR 79 (802)
T ss_dssp CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCC
T ss_pred hhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCC
Confidence 4687776 4589999999999999 444 368999998888776443 2 2234667998864
No 18
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=81.71 E-value=1.6 Score=39.81 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=42.8
Q ss_pred CCCCcchhhHhhHhhccchhhhhhccCCCcCCCCChHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhhcCCCCCCCc
Q 016557 197 IKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQ 276 (387)
Q Consensus 197 lGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~L~~L~~~l~s~~~~~~~vsP~~ll~~l~~~s~~~F~~~~Q 276 (387)
.-|+||+||++-+|=++.+. +..+..++.. =.|..|...+-... ....++-
T Consensus 19 ~dNNCwVNaa~l~LQ~~~~~--------------------~~~aw~~f~~-------Gd~~~fV~~~Ya~~--~~~~G~~ 69 (211)
T 3mp2_A 19 GDNNCWINACCYQLQAFDFF--------------------NNEAWEKFKK-------GDVMDFVNLCYAAT--TLARGHS 69 (211)
T ss_dssp CTTCHHHHHHHHHHTTCTTC--------------------CCHHHHHHTT-------TCCHHHHHHHHHHH--TCCTTSC
T ss_pred cCCCcHHHHHHHHHHhcChh--------------------HHHHHHHHhC-------CChHHHHHHHHHHc--CCCCCCC
Confidence 45899999998877665443 1223333322 25677777776654 5556788
Q ss_pred cCHHHHHHHHHHH
Q 016557 277 SNPVEFMSWLLNT 289 (387)
Q Consensus 277 qDA~EFL~~LLn~ 289 (387)
-||+++|..||+.
T Consensus 70 gDa~~~L~~Ll~~ 82 (211)
T 3mp2_A 70 GDAEYLLELMLND 82 (211)
T ss_dssp CCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999844
No 19
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=81.16 E-value=0.87 Score=49.79 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=31.7
Q ss_pred CCCCceEEecccCcccccCCCCCcccccccccCCceEEecC
Q 016557 128 LSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLR 168 (387)
Q Consensus 128 ~s~~nl~~CL~CG~~~cGr~~~sHa~~H~~~~~H~v~inl~ 168 (387)
.+..-||+||.|-.-|| ..|+..|+..++|++|+|+.
T Consensus 57 ~~~~gl~vcl~~f~~~~----~~~~~~~~~~~~~~~~l~i~ 93 (854)
T 3ihp_A 57 ESEGGLYICMNTFLGFG----KQYVERHFNKTGQRVYLHLR 93 (854)
T ss_dssp TSTTCEEEETTTCCEEC----TTTHHHHHHHHCCCEEEEEE
T ss_pred CCCCCeEEccccccccc----HHHHHHHHhccCCceEEEEE
Confidence 36789999999987777 38999999999999999764
No 20
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=77.78 E-value=1 Score=48.95 Aligned_cols=58 Identities=24% Similarity=0.317 Sum_probs=41.6
Q ss_pred ccccccCC--CCceEEecccCcccc-cCC--CCCcccccccccCCceEE-ecC----CCceeecCCCc
Q 016557 122 KFCSVSLS--NLNVYACLVCGKYYQ-GRG--QKSHAYTHSLEAGHHVYI-NLR----TEKVYCLPDGY 179 (387)
Q Consensus 122 k~Cs~c~s--~~nl~~CL~CG~~~c-Gr~--~~sHa~~H~~~~~H~v~i-nl~----t~~vyC~~c~~ 179 (387)
..|.-|.. ...+--|+.|++.|| |++ ..||...|-..+.|.-.. .-. ...+=||.|+.
T Consensus 7 ~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~ 74 (800)
T 2wjy_A 7 HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGC 74 (800)
T ss_dssp TSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCC
T ss_pred hhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCC
Confidence 46887764 478999999999999 343 378999998888776433 222 23567888864
No 21
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=73.95 E-value=5.7 Score=38.37 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=46.2
Q ss_pred CCCCcchhhHhhHhhccchhhhhhccCCCcCCCCChHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhhcCCCCCCCc
Q 016557 197 IKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQ 276 (387)
Q Consensus 197 lGNTCYmNSVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~L~~L~~~l~s~~~~~~~vsP~~ll~~l~~~s~~~F~~~~Q 276 (387)
.-|+||+||++-+|=++.+. + +.+ .|+++..++..+ .|..|...+-... ....++-
T Consensus 108 ~dNNCwVNaa~l~LQ~~~~~----F--------~~~---~l~~aw~~f~~G-------d~~~FVa~~Ya~~--~~~~G~~ 163 (315)
T 2fe8_A 108 ADNNCYLSSVLLALQQLEVK----F--------NAP---ALQEAYYRARAG-------DAANFCALILAYS--NKTVGEL 163 (315)
T ss_dssp CTTTHHHHHHHHHHHTSCCC----B--------SSH---HHHHHHHHHHHT-------CCHHHHHHHHHHT--TCCTTSC
T ss_pred cCCccHHHHHHHHHHhcCCc----c--------CCH---HHHHHHHHHhCC-------ChHHHHHHHHHhc--CCCCCCC
Confidence 45899999998776554321 0 111 445555555444 5777888876664 4456788
Q ss_pred cCHHHHHHHHHHHH
Q 016557 277 SNPVEFMSWLLNTL 290 (387)
Q Consensus 277 qDA~EFL~~LLn~L 290 (387)
-||.++|..||+..
T Consensus 164 gDa~~~L~~Ll~~~ 177 (315)
T 2fe8_A 164 GDVRETMTHLLQHA 177 (315)
T ss_dssp CCHHHHHHHHHTTB
T ss_pred ccHHHHHHHHHhcC
Confidence 99999999995544
No 22
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=56.70 E-value=3.8 Score=35.15 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=22.1
Q ss_pred ccccccCCCCcchhhHhhHhhccc-hhhhhhc
Q 016557 191 HVGLNNIKETDFVNVTIQSLMRVT-PLRNFFL 221 (387)
Q Consensus 191 ~vGL~NlGNTCYmNSVLQ~L~~ip-~fr~~~l 221 (387)
+-|+.|.-++|++|++||....+- ||-++.+
T Consensus 13 fys~pN~hdncWLNtilQLfryvdepfFd~~y 44 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLFRYVEEPFFDWVY 44 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHH
T ss_pred cccCCCCCcchHHHHHHHHHHHcCccchhhcc
Confidence 348999999999999999765432 3434433
No 23
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=48.63 E-value=9.7 Score=28.15 Aligned_cols=24 Identities=25% Similarity=0.701 Sum_probs=18.2
Q ss_pred ccccccCCCCc--eEEecccCcccccC
Q 016557 122 KFCSVSLSNLN--VYACLVCGKYYQGR 146 (387)
Q Consensus 122 k~Cs~c~s~~n--l~~CL~CG~~~cGr 146 (387)
..|+.|..... .+-| .||..||+.
T Consensus 16 ~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 16 NRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp CCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred CcChhhCCccCccCEEe-ecCCEeccc
Confidence 46888875433 4899 799999974
No 24
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=46.35 E-value=11 Score=27.94 Aligned_cols=24 Identities=21% Similarity=0.585 Sum_probs=18.4
Q ss_pred ccccccCCCCc--eEEecccCcccccC
Q 016557 122 KFCSVSLSNLN--VYACLVCGKYYQGR 146 (387)
Q Consensus 122 k~Cs~c~s~~n--l~~CL~CG~~~cGr 146 (387)
..|+.|..... .+.| .||..||+.
T Consensus 16 ~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 16 NRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred CcChhhCCcccccCeEe-ecCCEeccc
Confidence 46888876543 4899 899999974
No 25
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.69 E-value=11 Score=28.62 Aligned_cols=24 Identities=21% Similarity=0.581 Sum_probs=17.8
Q ss_pred ccccccCCCCc--eEEecccCcccccC
Q 016557 122 KFCSVSLSNLN--VYACLVCGKYYQGR 146 (387)
Q Consensus 122 k~Cs~c~s~~n--l~~CL~CG~~~cGr 146 (387)
..|+.|..... .+.| .||..||+.
T Consensus 26 ~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 26 TRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred ccchhhcCcccccceEe-ccCCEeccc
Confidence 36887864433 5999 899999974
No 26
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.41 E-value=9 Score=20.91 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=10.6
Q ss_pred eEEecccCcccccC
Q 016557 133 VYACLVCGKYYQGR 146 (387)
Q Consensus 133 l~~CL~CG~~~cGr 146 (387)
.|.|-.||+.|...
T Consensus 2 p~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 2 PYVCERCGKRFVQS 15 (26)
Confidence 47788999888753
No 27
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=32.82 E-value=17 Score=28.27 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=18.1
Q ss_pred ccccccCCCC---ceEEecccCcccccC
Q 016557 122 KFCSVSLSNL---NVYACLVCGKYYQGR 146 (387)
Q Consensus 122 k~Cs~c~s~~---nl~~CL~CG~~~cGr 146 (387)
..|+.|.... +.+.| .||..||+.
T Consensus 26 ~rC~~C~kkvgl~~~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 26 KHCFLCGKKTGLATSFEC-RCGNNFCAS 52 (85)
T ss_dssp CBCSSSCCBCSSSSCEEC-TTCCEECTT
T ss_pred ccchhhCCeecccCCeEc-CCCCEeccc
Confidence 4788887433 46999 599999974
No 28
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=31.34 E-value=10 Score=34.34 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=0.4
Q ss_pred cCCCCceEEecccCcccccCCCCCcccccccccCCceE
Q 016557 127 SLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVY 164 (387)
Q Consensus 127 c~s~~nl~~CL~CG~~~cGr~~~sHa~~H~~~~~H~v~ 164 (387)
+....-...|++||+.+.| ...|..|+.+++|.-|
T Consensus 174 t~~~~~~l~C~~C~~~~~g---~~~a~~ha~~tgH~~f 208 (212)
T 3by4_A 174 FNTHKAQIKCNTCQMTFVG---EREVARHAESTGHVDF 208 (212)
T ss_dssp C-------------------------------------
T ss_pred ccccCeEEEcccCCCcccC---HHHHHHHHHHhCCCCC
Confidence 4444556679999999987 4677899999999655
No 29
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=29.36 E-value=21 Score=22.59 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=10.4
Q ss_pred cCHHHHHHHHHHH
Q 016557 277 SNPVEFMSWLLNT 289 (387)
Q Consensus 277 qDA~EFL~~LLn~ 289 (387)
+=|++|+.||++.
T Consensus 9 ~aakdFv~WL~ng 21 (31)
T 3c5t_B 9 EAVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 3478999999874
No 30
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.93 E-value=25 Score=25.22 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=20.6
Q ss_pred ccccccCCCCceEEecccCccccc
Q 016557 122 KFCSVSLSNLNVYACLVCGKYYQG 145 (387)
Q Consensus 122 k~Cs~c~s~~nl~~CL~CG~~~cG 145 (387)
+.|.+|.. ...|.|..|+..+|.
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCCEESS
T ss_pred CccCcCcC-CCeeeCCCCCCCeeC
Confidence 46999999 999999999999984
No 31
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.66 E-value=9.1 Score=28.56 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=19.0
Q ss_pred ccccccCCCCce-----EEecccCcccccC
Q 016557 122 KFCSVSLSNLNV-----YACLVCGKYYQGR 146 (387)
Q Consensus 122 k~Cs~c~s~~nl-----~~CL~CG~~~cGr 146 (387)
..|+.|.....+ +.| .||..||+.
T Consensus 16 ~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp TBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred CcchhhCCeecccccCceEe-cCCCEehhc
Confidence 368888766655 689 999999974
No 32
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.41 E-value=13 Score=25.84 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=8.2
Q ss_pred ceEEecccCcccc
Q 016557 132 NVYACLVCGKYYQ 144 (387)
Q Consensus 132 nl~~CL~CG~~~c 144 (387)
.+|.||.||+.|-
T Consensus 2 ~iY~C~rCg~~fs 14 (48)
T 4ayb_P 2 AVYRCGKCWKTFT 14 (48)
T ss_dssp ---CCCCTTTTCC
T ss_pred cEEEeeccCCCcc
Confidence 4799999996664
No 33
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=33.81 E-value=13 Score=20.74 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=14.2
Q ss_pred eEEecccCcccccCCC-CCccccc
Q 016557 133 VYACLVCGKYYQGRGQ-KSHAYTH 155 (387)
Q Consensus 133 l~~CL~CG~~~cGr~~-~sHa~~H 155 (387)
.|.|-.||+.|..... ..|...|
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H 25 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLIAHVRQH 25 (29)
Confidence 3678889988875433 3444444
No 34
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=32.95 E-value=13 Score=20.62 Aligned_cols=23 Identities=26% Similarity=0.745 Sum_probs=14.3
Q ss_pred eEEecccCcccccCCC-CCccccc
Q 016557 133 VYACLVCGKYYQGRGQ-KSHAYTH 155 (387)
Q Consensus 133 l~~CL~CG~~~cGr~~-~sHa~~H 155 (387)
.|.|-.||+.|..... ..|...|
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~h 26 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGALQRHVRIH 26 (30)
Confidence 4788899988875433 3344444
No 35
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=26.59 E-value=24 Score=24.22 Aligned_cols=13 Identities=46% Similarity=1.045 Sum_probs=10.9
Q ss_pred ceEEecccCcccc
Q 016557 132 NVYACLVCGKYYQ 144 (387)
Q Consensus 132 nl~~CL~CG~~~c 144 (387)
..|.|.+||.++-
T Consensus 3 ~~y~C~vCGyvyd 15 (46)
T 6rxn_A 3 QKYVCNVCGYEYD 15 (46)
T ss_dssp CCEEETTTCCEEC
T ss_pred CEEECCCCCeEEe
Confidence 4799999997775
No 36
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=26.36 E-value=10 Score=26.92 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=8.1
Q ss_pred CceEEecccCcccc
Q 016557 131 LNVYACLVCGKYYQ 144 (387)
Q Consensus 131 ~nl~~CL~CG~~~c 144 (387)
...|.|-.||+.|.
T Consensus 30 ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 30 YRPRSCPECGKCFR 43 (60)
T ss_dssp CCCEECTTTCCEES
T ss_pred CcCeECCCCCCCcC
Confidence 34566666665554
No 37
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.53 E-value=15 Score=20.31 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=10.7
Q ss_pred eEEecccCcccccC
Q 016557 133 VYACLVCGKYYQGR 146 (387)
Q Consensus 133 l~~CL~CG~~~cGr 146 (387)
.|.|-.||+.|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 1rik_A 2 KFACPECPKRFMRS 15 (29)
T ss_dssp CEECSSSSCEESCS
T ss_pred CccCCCCCchhCCH
Confidence 37889999888743
No 38
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=20.71 E-value=49 Score=20.67 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=10.6
Q ss_pred ccCHHHHHHHHHHH
Q 016557 276 QSNPVEFMSWLLNT 289 (387)
Q Consensus 276 QqDA~EFL~~LLn~ 289 (387)
|.=|.+|+.||++.
T Consensus 16 ~~~ak~fv~wLl~~ 29 (30)
T 1t5q_A 16 KIHQQDFVNWLLAQ 29 (30)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 45578899999873
No 39
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=20.42 E-value=43 Score=25.69 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=19.4
Q ss_pred cccccCC---CCceEEecccCccccc
Q 016557 123 FCSVSLS---NLNVYACLVCGKYYQG 145 (387)
Q Consensus 123 ~Cs~c~s---~~nl~~CL~CG~~~cG 145 (387)
.|++|.. ...+..|+.|+..||.
T Consensus 5 ~C~~C~~~~~~~av~~C~~C~~~~C~ 30 (101)
T 2jun_A 5 LCQFCDQDPAQDAVKTCVTCEVSYCD 30 (101)
T ss_dssp BCTTCCSSSCCBCCEEETTTTEEECH
T ss_pred CCcCCCCCCCCCceEECCcCChHHhH
Confidence 6999984 5788899999999993
Done!