BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016558
         (387 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MVM|A Chain A, Mvm(Strain I), Complex(Viral CoatDNA), VP2, PH7.5, T4
           Degrees C
 pdb|1Z1C|A Chain A, Structural Determinants Of Tissue Tropism And In Vivo
           Pathogenicity For The Parvovirus Minute Virus Of Mice
          Length = 587

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 11  ENVSGTDFLSPSPVKTHVNGTDNRKNGGVKEKAIDDKSNENGKSGGAKGKTNDDKRSETD 70
           E  +GT +   +PVK       NR+ G     +   +++ +  +  A+G  +   + E +
Sbjct: 264 EFATGTYYFDTNPVKLTHTWQTNRQLGQPPLLSTFPEADTDAGTLTAQGSRHGATQMEVN 323

Query: 71  --NGKIGVGKEKTG--DKSDETENGKNG-RAKEKPIADKTNVTDNEKNGGVKEKSDKSNE 125
             +  I     + G     ++ E  + G  A  K  AD T   D E NG V+    K + 
Sbjct: 324 WVSEAIRTRPAQVGFCQPHNDFEASRAGPFAAPKVPADVTQGMDREANGSVRYSYGKQHG 383

Query: 126 TDNGKNGGAKEKNTDDKSN 144
            +   +G A E+ T D++N
Sbjct: 384 ENWAAHGPAPERYTWDETN 402


>pdb|2XGK|A Chain A, Virus Like Particle Of L172w Mutant Of Minute Virus Of
           Mice - The Immunosuppressive Strain
          Length = 587

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 11  ENVSGTDFLSPSPVKTHVNGTDNRKNGGVKEKAIDDKSNENGKSGGAKGKTNDDKRSETD 70
           E  +GT +   +PVK       NR+ G     +   +++ +  +  A+G  +   + E +
Sbjct: 264 EFATGTYYFDTNPVKLTHTWQTNRQLGQPPLLSTFPEADTDAGTLTAQGSRHGATQMEVN 323

Query: 71  --NGKIGVGKEKTG--DKSDETENGKNG-RAKEKPIADKTNVTDNEKNGGVKEKSDKSNE 125
             +  I     + G     ++ E  + G  A  K  AD T   D E NG V+    K + 
Sbjct: 324 WVSEAIRTRPAQVGFCQPHNDFEASRAGPFAAPKVPADVTQGMDREANGSVRYSYGKQHG 383

Query: 126 TDNGKNGGAKEKNTDDKSN 144
            +   +G A E+ T D++N
Sbjct: 384 ENWAAHGPAPERYTWDETN 402


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.128    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,772,539
Number of Sequences: 62578
Number of extensions: 598902
Number of successful extensions: 588
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 31
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 52 (24.6 bits)