BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016558
         (387 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q09285|YQK1_CAEEL KH domain-containing protein C56G2.1 OS=Caenorhabditis elegans
           GN=C56G2.1/C56G2.2 PE=4 SV=2
          Length = 867

 Score = 32.0 bits (71), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 36  NGGVKEKAIDDKSNENGKSGGAKGKTNDDKRSETDNGKIGVGKEKTGDKSDETENGKNGR 95
           NG  K     D   ENG    A G  N D +S      IGV +++     DE    K+  
Sbjct: 146 NGLPKTATASDVQTENGNVKKANGHVNGDVQS-----SIGVSQKQQQKDEDEKTQKKDAV 200

Query: 96  AKEKPIADKTNVTDN-------EKNGGVKEKSDKSNETDNGKNGGAKEKNTDDKSNEMDN 148
             EKP  DK             EK   +  ++++++    G +G   E    DK  +  N
Sbjct: 201 QNEKPSIDKKQPKSQAPTEKKEEKTVEIHTETEETDHVAAGDSGVVSEHKEHDKKTKQKN 260

Query: 149 GKNGGVKEKTIDDKSGSEFGV 169
            +   + +K+ + +   + GV
Sbjct: 261 DEPVSIDKKSEEIEVPKQAGV 281


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.129    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,509,916
Number of Sequences: 539616
Number of extensions: 8295370
Number of successful extensions: 29705
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 1127
Number of HSP's that attempted gapping in prelim test: 19620
Number of HSP's gapped (non-prelim): 6825
length of query: 387
length of database: 191,569,459
effective HSP length: 119
effective length of query: 268
effective length of database: 127,355,155
effective search space: 34131181540
effective search space used: 34131181540
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 62 (28.5 bits)