Query 016558
Match_columns 387
No_of_seqs 35 out of 37
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 15:35:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ys4_A Hydrocephalus-inducing 91.0 2.6 8.9E-05 33.8 10.6 87 171-257 17-107 (122)
2 3lge_E Sorting nexin-9; comple 86.8 0.23 7.8E-06 34.0 1.3 12 339-350 8-19 (31)
3 2qsv_A Uncharacterized protein 81.9 6.9 0.00024 34.5 9.0 51 194-244 18-69 (220)
4 2e6j_A Hydin protein; PAPD, st 70.4 26 0.00088 26.9 8.4 54 191-244 22-80 (112)
5 2klu_A T-cell surface glycopro 57.3 1.8 6.2E-05 34.4 -0.5 34 279-315 7-41 (70)
6 2qsv_A Uncharacterized protein 37.5 51 0.0018 28.9 5.6 49 195-243 134-184 (220)
7 2r39_A FIXG-related protein; s 36.9 1.4E+02 0.0049 23.7 7.7 47 197-243 33-82 (118)
8 3j0c_A E1 envelope glycoprotei 34.2 87 0.003 31.9 7.1 123 184-313 302-441 (442)
9 3qbt_B Inositol polyphosphate 32.6 1.7E+02 0.0059 24.2 7.8 48 196-243 44-99 (140)
10 3rgh_A Filamin-A; cell adhesio 31.2 1.2E+02 0.0042 23.5 6.3 46 198-246 28-73 (100)
11 2jwa_A Receptor tyrosine-prote 29.6 6 0.00021 28.8 -1.4 27 286-313 14-40 (44)
12 2l8s_A Integrin alpha-1; trans 28.9 6.4 0.00022 29.8 -1.4 22 293-314 21-42 (54)
13 2knc_A Integrin alpha-IIB; tra 28.2 9.2 0.00032 28.8 -0.7 21 294-314 25-45 (54)
14 2ks1_B Epidermal growth factor 26.5 8.9 0.00031 27.7 -1.0 19 288-306 16-34 (44)
15 2dia_A Filamin-B; beta-sandwic 23.2 2.1E+02 0.0073 22.4 6.4 56 197-255 30-87 (113)
16 2l2t_A Receptor tyrosine-prote 23.1 11 0.00038 27.3 -1.0 14 293-306 20-33 (44)
17 1cd1_A CD1, MCD1D.1; immunolog 23.1 28 0.00095 32.2 1.3 7 256-262 257-263 (315)
18 3cnk_A Filamin-A; FLNA24, X-RA 22.9 1.8E+02 0.0061 21.8 5.7 45 199-246 20-64 (89)
19 3t5v_C 26S proteasome complex 22.2 33 0.0011 28.2 1.5 11 338-348 57-67 (89)
20 2k9y_A Ephrin type-A receptor 20.7 17 0.00058 24.6 -0.4 8 299-306 30-37 (41)
No 1
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.01 E-value=2.6 Score=33.81 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=62.1
Q ss_pred cccCCCCccccccceeeeeeccCCCCcceEEEEEcCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEecCC----
Q 016558 171 ETCNGLHKCEDLKALIACIQNFDTGSGELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSARK---- 246 (387)
Q Consensus 171 eeCD~s~kC~d~~kmiACL~v~gn~S~~lsLLVQNkG~~~L~V~ItaPd~V~~~~~~L~L~K~qskKV~IS~s~~~---- 246 (387)
-.|.+..-..+...-+-|...+-.......|+|+|.|.-+...++..+..+.+.+..-.|.-+++.+|+|++.-..
T Consensus 17 l~a~~~~~~l~~p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g~~ 96 (122)
T 2ys4_A 17 IKARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIEPAIGTLNVGESMQLEVEFEPQSVGDH 96 (122)
T ss_dssp SCCCSCCCCCCCCSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECCTTEEEESSEEEECTTCEEEEEEEECCSSSBCC
T ss_pred EEEEcCCcEECCCCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecCCCeEEECCcCEECCCCEEEEEEEEEcCCCccE
Confidence 4454443333322344455555567788999999999999999998887888999999999999999999998322
Q ss_pred CceEEEEeccC
Q 016558 247 NSKLVLNAGNG 257 (387)
Q Consensus 247 s~~IvL~aGkG 257 (387)
...|++...++
T Consensus 97 ~~~l~v~~~~g 107 (122)
T 2ys4_A 97 SGRLIVCYDTG 107 (122)
T ss_dssp CCBCEEEESSS
T ss_pred EEEEEEEECCC
Confidence 24455554443
No 2
>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus}
Probab=86.81 E-value=0.23 Score=34.04 Aligned_cols=12 Identities=58% Similarity=1.498 Sum_probs=10.1
Q ss_pred CCcCCCCCCCCC
Q 016558 339 EGWDEGWDDDWD 350 (387)
Q Consensus 339 DGWDdgWDDDWD 350 (387)
-|=|+.||||||
T Consensus 8 ~G~DDDWDdeWD 19 (31)
T 3lge_E 8 TGDDDDWDEDWD 19 (31)
T ss_pred CCCccccccccc
Confidence 466889999999
No 3
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=81.86 E-value=6.9 Score=34.45 Aligned_cols=51 Identities=22% Similarity=0.462 Sum_probs=43.2
Q ss_pred CCCcceEEEEEcCCCceEEEEE-EcCccccCCCceeeecccceeEEEEEEec
Q 016558 194 TGSGELTILVQNEGEKTLIVTI-TIPTAVENPLKQLKISKHQTQKINISLSA 244 (387)
Q Consensus 194 n~S~~lsLLVQNkG~~~L~V~I-taPd~V~~~~~~L~L~K~qskKV~IS~s~ 244 (387)
.+...+.+.+.|.|+.+|.++. .+|.++.....+-.|.-++...|+|+|..
T Consensus 18 g~~~~~~~~i~N~g~~pl~i~~~~~p~~~~~~~~~~~I~PG~~g~I~vt~~~ 69 (220)
T 2qsv_A 18 EDEGVVRLVVNNTDESDLQVAVVSLPSFVSLDDRAFRLQAREPRELNLSLAV 69 (220)
T ss_dssp TCCCEEEEEEEECSSSCEEEEEEECCTTEECSCCEEEECSSSCEEEEEEECC
T ss_pred CCcceEEEEEEeCCCCceEEEeccCCCceEeeeCcceeCCCCceEEEEEEcc
Confidence 4556789999999999999997 47888888777788888999999999874
No 4
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.42 E-value=26 Score=26.85 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=40.8
Q ss_pred ccCCCCcceEEEEEcCCCceEEEEEEcCc-----cccCCCceeeecccceeEEEEEEec
Q 016558 191 NFDTGSGELTILVQNEGEKTLIVTITIPT-----AVENPLKQLKISKHQTQKINISLSA 244 (387)
Q Consensus 191 v~gn~S~~lsLLVQNkG~~~L~V~ItaPd-----~V~~~~~~L~L~K~qskKV~IS~s~ 244 (387)
++-.......+.++|.|.-++...+..+. .+...+.+=.|.-+++..|+|++..
T Consensus 22 v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~ 80 (112)
T 2e6j_A 22 VFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSS 80 (112)
T ss_dssp EESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECC
T ss_pred EEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEEC
Confidence 33345678899999999999999985321 2455666777888889999999884
No 5
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=57.29 E-value=1.8 Score=34.37 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=15.9
Q ss_pred ceeecccchhhHHHHHHHHhhhceeE-EEeecccccCC
Q 016558 279 YDKILTPINGAYFLILSVLIFGVTWA-CCKCRKRRWND 315 (387)
Q Consensus 279 Y~~iltPI~GAYfLv~tvVliGgvwa-CCkfRkrr~~~ 315 (387)
|..++ -+.|+.++++.+.-+. -. |.++|+||+|+
T Consensus 7 ~p~~L-ivlGg~~~lll~~glc--I~ccvkcrhRrrqA 41 (70)
T 2klu_A 7 GSMAL-IVLGGVAGLLLFIGLG--IFFSVRSRHRRRQA 41 (70)
T ss_dssp CSSHH-HHHHHHHHHHHHHHHH--HHHHHHSSCCSSSC
T ss_pred hHHHH-HHHhHHHHHHHHHHHH--HHHhhHHHHHHHHH
Confidence 33444 2445554443332222 23 33477777774
No 6
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=37.53 E-value=51 Score=28.86 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=35.9
Q ss_pred CCcceEEEEEcCCCceEEE-EEEcC-ccccCCCceeeecccceeEEEEEEe
Q 016558 195 GSGELTILVQNEGEKTLIV-TITIP-TAVENPLKQLKISKHQTQKINISLS 243 (387)
Q Consensus 195 ~S~~lsLLVQNkG~~~L~V-~ItaP-d~V~~~~~~L~L~K~qskKV~IS~s 243 (387)
......+.+.|.|..+|.+ +|.++ .-......+-.|.-+++.+|+|+|.
T Consensus 134 ~~~~~~f~i~N~G~~pL~I~~v~~scgct~~~~~~~~i~PGe~~~i~v~~~ 184 (220)
T 2qsv_A 134 ETTKAAIEIRNVGAGPLRLHSVTTRNPALTAVPDRTEIKPGGSTLLRIAVD 184 (220)
T ss_dssp SCEEEEEEEEECSSSCEEEEEEEECSTTEEEEESCSEECTTCEEEEEEEEC
T ss_pred CeEEEEEEEEECCCCCEEEEEEEeCCCCEeeecCCccCCCCCEEEEEEEEe
Confidence 5567799999999999999 66666 3333333444566888888888887
No 7
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=36.90 E-value=1.4e+02 Score=23.72 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=34.3
Q ss_pred cceEEEEEcCCCceEEEEEEcC--ccccCC-CceeeecccceeEEEEEEe
Q 016558 197 GELTILVQNEGEKTLIVTITIP--TAVENP-LKQLKISKHQTQKINISLS 243 (387)
Q Consensus 197 ~~lsLLVQNkG~~~L~V~ItaP--d~V~~~-~~~L~L~K~qskKV~IS~s 243 (387)
-.|.|-+.|+.+.+-.+.|++. ..+... ...|+|..++...+.|.+.
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~ 82 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLG 82 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEE
Confidence 3689999999999888888663 223321 2358888888888887776
No 8
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=34.16 E-value=87 Score=31.89 Aligned_cols=123 Identities=14% Similarity=0.213 Sum_probs=69.2
Q ss_pred ceeeeeeccCCCCcceEEEEEcCCCceEEEEEEcCc-cccCCCceeeecccceeEEEEEEecCC-CceEEEE--eccCce
Q 016558 184 ALIACIQNFDTGSGELTILVQNEGEKTLIVTITIPT-AVENPLKQLKISKHQTQKINISLSARK-NSKLVLN--AGNGEC 259 (387)
Q Consensus 184 kmiACL~v~gn~S~~lsLLVQNkG~~~L~V~ItaPd-~V~~~~~~L~L~K~qskKV~IS~s~~~-s~~IvL~--aGkG~C 259 (387)
.+..|.-.++= +=...++=+..+.=+.-|..++ .+.+.+..++|. +.-++++.++... ....+|. ...-.|
T Consensus 302 ~v~~CtySsDf---GGvatl~Y~~~k~GkCaVHs~S~~atl~e~~v~v~--~~g~~t~hFSTas~~~~F~v~iC~~~~tC 376 (442)
T 3j0c_A 302 TLNECVYSSDF---GGIATVKYSASKSGKCAVHVPSGTATLKEAAVELT--EQGSATIHFSTANIHPEFRLQICTSYVTC 376 (442)
T ss_dssp EEEEEBCSSSC---CEEEEEEEEESSCEEEEEECSSTTEEESCSEEEEC--SSCEEEEEEEESCSSCEEEEEETTEEEEE
T ss_pred EEEEeEeccCc---CceEEEEEecCCCcccceeccCCceEeeeeeeeee--ccceEEEEEecCCCCCCEEEEeccCccee
Confidence 45677777663 3356666666666677776663 333444455555 5556666666433 3454444 444445
Q ss_pred EEecCCCC--------cccccccccccceee-----cccchhhHHHHHHHHhhhceeEEEeeccccc
Q 016558 260 VLHMGRPA--------SEEKIFIYLPSYDKI-----LTPINGAYFLILSVLIFGVTWACCKCRKRRW 313 (387)
Q Consensus 260 ~Lhi~~~v--------sd~~~f~~~pSY~~i-----ltPI~GAYfLv~tvVliGgvwaCCkfRkrr~ 313 (387)
.-.-++|- .+.+.|+ |+.+.- ..-+.|+.+|+++.||+.++-+|+.|+|+|+
T Consensus 377 ~a~C~PPkDHIV~~p~~h~~~~~--~~vS~Taw~W~~~l~GG~~~~~~i~~~~~~~v~~~~~~r~~~ 441 (442)
T 3j0c_A 377 KGDCHPPKDHIVTHPQYHAQTFT--AAVSKTAWTWLTSLLGGSAVIIIIGLVLATIVAMYVLTNQKH 441 (442)
T ss_dssp ECCCBCCSCCEESSCCCCCCCCS--CCCCHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccCCcccccCCccccccccc--ccchhhHHHHHHHHhcccHHHHHHHHHHHHHHhhhhhhhccc
Confidence 44433321 2222121 221221 1235577788888888888889999988876
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=32.55 E-value=1.7e+02 Score=24.23 Aligned_cols=48 Identities=8% Similarity=0.051 Sum_probs=36.9
Q ss_pred CcceEEEEEcCCCceEEEEEEcC--------ccccCCCceeeecccceeEEEEEEe
Q 016558 196 SGELTILVQNEGEKTLIVTITIP--------TAVENPLKQLKISKHQTQKINISLS 243 (387)
Q Consensus 196 S~~lsLLVQNkG~~~L~V~ItaP--------d~V~~~~~~L~L~K~qskKV~IS~s 243 (387)
..-.+|.|+|.|+-+....+..+ ..+.+.+..-.|.-+++..|.|++.
T Consensus 44 ~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~ 99 (140)
T 3qbt_B 44 LQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99 (140)
T ss_dssp CEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred eeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence 34669999999999999999754 2344556666778888888888877
No 10
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=31.24 E-value=1.2e+02 Score=23.51 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEecCC
Q 016558 198 ELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSARK 246 (387)
Q Consensus 198 ~lsLLVQNkG~~~L~V~ItaPd~V~~~~~~L~L~K~qskKV~IS~s~~~ 246 (387)
.++|--.+.|...|.|.|+.|+.. ..++++..+..-.-.|+|+-..
T Consensus 28 ~F~V~~~~aG~~~l~v~i~~~~g~---~~~~~v~d~~dGty~V~Y~p~~ 73 (100)
T 3rgh_A 28 QFQVDCSSAGSAELTIEICSEAGL---PAEVYIQDHGDGTHTITYIPLC 73 (100)
T ss_dssp EEEEECTTSCSCCEEEEEECTTSC---BCEEEEEECSSSEEEEEEECCS
T ss_pred EEEEEECCCCCceEEEEEECCCCC---EeEEEEEeCCCCEEEEEEEeCC
Confidence 355556677899999999988653 2356776777777788887433
No 11
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=29.57 E-value=6 Score=28.78 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=15.1
Q ss_pred chhhHHHHHHHHhhhceeEEEeeccccc
Q 016558 286 INGAYFLILSVLIFGVTWACCKCRKRRW 313 (387)
Q Consensus 286 I~GAYfLv~tvVliGgvwaCCkfRkrr~ 313 (387)
|.++...++.+||++.+|+++ +||||.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~-~RRR~~ 40 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGIL-IKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHhh-eehhhh
Confidence 344444566677777776654 444443
No 12
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=28.94 E-value=6.4 Score=29.77 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=16.0
Q ss_pred HHHHHhhhceeEEEeecccccC
Q 016558 293 ILSVLIFGVTWACCKCRKRRWN 314 (387)
Q Consensus 293 v~tvVliGgvwaCCkfRkrr~~ 314 (387)
++.+||+.+.|-|-.|+|+|..
T Consensus 21 LLL~Lii~~LwK~GFFKR~~~~ 42 (54)
T 2l8s_A 21 LLLMLLILALWKIGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHcCcccCCCcc
Confidence 3444567788999999888754
No 13
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.17 E-value=9.2 Score=28.80 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=15.6
Q ss_pred HHHHhhhceeEEEeecccccC
Q 016558 294 LSVLIFGVTWACCKCRKRRWN 314 (387)
Q Consensus 294 ~tvVliGgvwaCCkfRkrr~~ 314 (387)
+.+||+.+.|-|-.|+|+|..
T Consensus 25 lL~li~~~LwK~GFFkR~~~~ 45 (54)
T 2knc_A 25 LLTILVLAMWKVGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHHcCcccCCCCC
Confidence 444566778999989888864
No 14
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.52 E-value=8.9 Score=27.69 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=8.3
Q ss_pred hhHHHHHHHHhhhceeEEE
Q 016558 288 GAYFLILSVLIFGVTWACC 306 (387)
Q Consensus 288 GAYfLv~tvVliGgvwaCC 306 (387)
|+..-++.+++++++|.++
T Consensus 16 gVVgGv~~~~ii~~~~~~~ 34 (44)
T 2ks1_B 16 GMVGALLLLLVVALGIGLF 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHH
Confidence 3333344444444554443
No 15
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=23.18 E-value=2.1e+02 Score=22.40 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=36.8
Q ss_pred cceEEEEEcCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEecCCC--ceEEEEec
Q 016558 197 GELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSARKN--SKLVLNAG 255 (387)
Q Consensus 197 ~~lsLLVQNkG~~~L~V~ItaPd~V~~~~~~L~L~K~qskKV~IS~s~~~s--~~IvL~aG 255 (387)
..++|-..+.|...|.|.|..|+.. ..++++.....-...|+|+-... -.|.|+.+
T Consensus 30 ~~F~V~~~daG~~~l~v~i~~~~g~---~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~ 87 (113)
T 2dia_A 30 GLLSVDCSEAGPGALGLEAVSDSGT---KAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYG 87 (113)
T ss_dssp CCEEEEESSCCSCCEEEEEEETTTE---ECEEEEEECTTSEEEEEEECSSCEEEEEEEEET
T ss_pred EEEEEEECCCCCccEEEEEECCCCC---EeeEEEEECCCCEEEEEEEeCCCccEEEEEEEC
Confidence 3477778888999999999887542 23556666666777777774333 33444443
No 16
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.11 E-value=11 Score=27.30 Aligned_cols=14 Identities=29% Similarity=0.645 Sum_probs=6.3
Q ss_pred HHHHHhhhceeEEE
Q 016558 293 ILSVLIFGVTWACC 306 (387)
Q Consensus 293 v~tvVliGgvwaCC 306 (387)
++.+++++++|.++
T Consensus 20 v~~v~ii~~~~~~~ 33 (44)
T 2l2t_A 20 LFILVIVGLTFAVY 33 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 17
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=23.06 E-value=28 Score=32.18 Aligned_cols=7 Identities=14% Similarity=0.377 Sum_probs=4.4
Q ss_pred cCceEEe
Q 016558 256 NGECVLH 262 (387)
Q Consensus 256 kG~C~Lh 262 (387)
.=.|.+.
T Consensus 257 ~ysC~V~ 263 (315)
T 1cd1_A 257 GLACRVK 263 (315)
T ss_dssp TEEEEEE
T ss_pred EEEEEEE
Confidence 3467776
No 18
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=22.91 E-value=1.8e+02 Score=21.75 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=29.6
Q ss_pred eEEEEEcCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEecCC
Q 016558 199 LTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSARK 246 (387)
Q Consensus 199 lsLLVQNkG~~~L~V~ItaPd~V~~~~~~L~L~K~qskKV~IS~s~~~ 246 (387)
++|..-+.|...|.|.|..|+.. ..++++.....-...|+|+-..
T Consensus 20 F~v~~~~aG~~~l~v~v~~p~g~---~~~~~v~d~~dGty~v~Y~p~~ 64 (89)
T 3cnk_A 20 FTVDCSKAGNNMLLVGVHGPRTP---CEEILVKHVGSRLYSVSYLLKD 64 (89)
T ss_dssp EEEECTTSCSCCEEEEEECSSSC---CSEEEEEEEETTEEEEEEECCS
T ss_pred EEEEECcCCCCcEEEEEECCCCC---ceeEEEEECCCCEEEEEEEECC
Confidence 34444455889999999988541 2356665666667888887433
No 19
>3t5v_C 26S proteasome complex subunit SEM1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.23 E-value=33 Score=28.24 Aligned_cols=11 Identities=45% Similarity=1.169 Sum_probs=6.1
Q ss_pred CCCcCCCCCCC
Q 016558 338 AEGWDEGWDDD 348 (387)
Q Consensus 338 aDGWDdgWDDD 348 (387)
..-|.++||||
T Consensus 57 ~~lWEddWDDD 67 (89)
T 3t5v_C 57 TNIWEENWDDV 67 (89)
T ss_dssp CCCBCTTTTTC
T ss_pred ccccccccccc
Confidence 44566666443
No 20
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=20.72 E-value=17 Score=24.59 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=3.7
Q ss_pred hhceeEEE
Q 016558 299 FGVTWACC 306 (387)
Q Consensus 299 iGgvwaCC 306 (387)
+.+.|.||
T Consensus 30 v~~~~~~~ 37 (41)
T 2k9y_A 30 AGVGFFIH 37 (41)
T ss_dssp HHHHHSSS
T ss_pred HHHheeEe
Confidence 34445554
Done!