Query 016558
Match_columns 387
No_of_seqs 35 out of 37
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 15:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016558.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016558hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w8oa1 b.1.18.2 (A:403-505) S 72.1 4.4 0.00032 30.8 6.4 53 195-247 17-72 (103)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 41.6 1.7 0.00012 32.9 -1.1 27 288-314 34-60 (100)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 40.0 1.6 0.00012 33.6 -1.5 26 289-314 41-66 (107)
4 d2dica1 b.1.18.10 (A:8-105) Fi 32.9 50 0.0036 23.6 6.1 63 173-244 2-65 (98)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 31.4 1.1 8E-05 33.7 -3.7 23 292-314 27-49 (91)
6 d2d7ma1 b.1.18.10 (A:8-109) Fi 26.2 65 0.0047 23.3 5.8 56 197-255 25-82 (102)
7 d2w0pa1 b.1.18.10 (A:2237-2328 25.4 55 0.004 23.4 5.2 53 197-254 21-75 (92)
8 d2dmba1 b.1.18.10 (A:8-118) Fi 25.0 1.1E+02 0.0082 22.2 7.1 37 204-243 31-67 (111)
9 d2di8a1 b.1.18.10 (A:8-105) Fi 21.5 89 0.0065 22.4 5.7 43 197-244 23-65 (98)
10 d1v05a_ b.1.18.10 (A:) Filamin 20.8 99 0.0072 21.8 5.8 44 197-243 25-68 (96)
No 1
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=72.12 E-value=4.4 Score=30.80 Aligned_cols=53 Identities=6% Similarity=0.042 Sum_probs=45.5
Q ss_pred CCcceEEEEEcCCCceE---EEEEEcCccccCCCceeeecccceeEEEEEEecCCC
Q 016558 195 GSGELTILVQNEGEKTL---IVTITIPTAVENPLKQLKISKHQTQKINISLSARKN 247 (387)
Q Consensus 195 ~S~~lsLLVQNkG~~~L---~V~ItaPd~V~~~~~~L~L~K~qskKV~IS~s~~~s 247 (387)
++..+.+.|.|.|...+ .+.+.+|..+...+..+.|..+++..|.+.++.+.+
T Consensus 17 ~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~Vt~p~~ 72 (103)
T d1w8oa1 17 QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTITVPAG 72 (103)
T ss_dssp CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEEECCTT
T ss_pred CeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEEECCCC
Confidence 56789999999998764 688899999999999999999999999999985443
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=41.64 E-value=1.7 Score=32.92 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=17.5
Q ss_pred hhHHHHHHHHhhhceeEEEeecccccC
Q 016558 288 GAYFLILSVLIFGVTWACCKCRKRRWN 314 (387)
Q Consensus 288 GAYfLv~tvVliGgvwaCCkfRkrr~~ 314 (387)
..-++|+++|....+++|++||+++..
T Consensus 34 ~i~~~I~~~V~~~l~~~~~~~r~~~~~ 60 (100)
T d3dtub2 34 VIIAAITIFVTLLILYAVWRFHEKRNK 60 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 344455666666777778888877654
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=40.03 E-value=1.6 Score=33.61 Aligned_cols=26 Identities=4% Similarity=-0.047 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhhceeEEEeecccccC
Q 016558 289 AYFLILSVLIFGVTWACCKCRKRRWN 314 (387)
Q Consensus 289 AYfLv~tvVliGgvwaCCkfRkrr~~ 314 (387)
+-++|+++|....+|++++||+++..
T Consensus 41 i~~~I~~~V~~~~~~~~~~~r~~~~~ 66 (107)
T d3ehbb2 41 IITAVTIFVCLLLLICIVRFNRRANP 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHSBTTTSS
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCc
Confidence 33444555556777888888877653
No 4
>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.86 E-value=50 Score=23.64 Aligned_cols=63 Identities=11% Similarity=0.219 Sum_probs=36.3
Q ss_pred cCCCCcccccc-ceeeeeeccCCCCcceEEEEEcCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEec
Q 016558 173 CNGLHKCEDLK-ALIACIQNFDTGSGELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSA 244 (387)
Q Consensus 173 CD~s~kC~d~~-kmiACL~v~gn~S~~lsLLVQNkG~~~L~V~ItaPd~V~~~~~~L~L~K~qskKV~IS~s~ 244 (387)
|||+ +|+..+ -|..+. + .....+.|...+.|...|.|.|..|..+ ++.+.....-...|+|+-
T Consensus 2 ~Dps-kv~v~G~Gl~~~~-v--g~~~~F~V~~~~ag~g~l~v~v~~p~~~-----~~~v~~~~dg~y~v~y~P 65 (98)
T d2dica1 2 CQPS-RVQAQGPGLKEAF-T--NKPNVFTVVTRGAGIGGLGITVEGPSES-----KINCRDNKDGSCSAEYIP 65 (98)
T ss_dssp CCTT-SCEEESHHHHCEE-T--TCCEEEEEECTTTCSSCEEEEEESSSCC-----CCEEEECSSSCEEEEECC
T ss_pred CCCC-eeEEECCCcCceE-C--CCeEEEEEEcCCCCCCCcEEEEEeCCCc-----EEEEEECCCCEEEEEEEE
Confidence 6666 466522 232222 2 1233455555678888999999999653 334444455556777773
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=31.39 E-value=1.1 Score=33.72 Aligned_cols=23 Identities=13% Similarity=0.067 Sum_probs=14.1
Q ss_pred HHHHHHhhhceeEEEeecccccC
Q 016558 292 LILSVLIFGVTWACCKCRKRRWN 314 (387)
Q Consensus 292 Lv~tvVliGgvwaCCkfRkrr~~ 314 (387)
++|.+|.....|+..+||+++..
T Consensus 27 iv~v~V~~~~~~~~~ryR~~~~~ 49 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRASNKD 49 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTSTTT
T ss_pred HHHHHHHHHHHhhheeeeccCCc
Confidence 33444555556677778877655
No 6
>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.22 E-value=65 Score=23.28 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=34.9
Q ss_pred cceEEEEEcCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEecCC--CceEEEEec
Q 016558 197 GELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSARK--NSKLVLNAG 255 (387)
Q Consensus 197 ~~lsLLVQNkG~~~L~V~ItaPd~V~~~~~~L~L~K~qskKV~IS~s~~~--s~~IvL~aG 255 (387)
..+.+-..+.|...|+|.|..|+.-. .++.|.......-.|+|+-.. .-.|.|..+
T Consensus 25 ~~F~Vd~~~aG~g~l~v~i~~p~g~~---~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~ 82 (102)
T d2d7ma1 25 VEFTIDARDAGEGLLTVQILDPEGKP---KKANIRDNGDGTYTVSYLPDMSGRYTITIKYG 82 (102)
T ss_dssp EEEEEEESSSCSSCEEEEEECTTSCB---CCEEEEECSSSCEEEEECCCSCEEEEEEEEES
T ss_pred EEEEEEeCCCCCCcEEEEEEeCCCCE---eeeEEEeCCCcEEEEEEEECCCEeEEEEEEEC
Confidence 34555567889999999999995422 245555555556677777322 234444443
No 7
>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.38 E-value=55 Score=23.44 Aligned_cols=53 Identities=9% Similarity=0.280 Sum_probs=35.0
Q ss_pred cceEEEEEcCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEecCCC--ceEEEEe
Q 016558 197 GELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSARKN--SKLVLNA 254 (387)
Q Consensus 197 ~~lsLLVQNkG~~~L~V~ItaPd~V~~~~~~L~L~K~qskKV~IS~s~~~s--~~IvL~a 254 (387)
..+.|-..+.|...|.|.|..|+.+ ++.+.........|+|+-... =.|.|..
T Consensus 21 ~~F~V~~~~ag~g~l~v~v~gp~~~-----~v~v~d~~dg~y~v~ytP~~~G~y~i~V~~ 75 (92)
T d2w0pa1 21 AEFSIWTREAGAGGLAIAVEGPSKA-----EISFEDRKDGSCGVAYVVQEPGDYEVSVKF 75 (92)
T ss_dssp EEEEEECGGGCSCCEEEEEEESSCC-----EEEEEECTTSCEEEEEECSSCEEEEEEEEE
T ss_pred EEEEEEeCCCCCCceEEEEEeCCce-----EEEEEECCCCEEEEEEEECCCceEEEEEEE
Confidence 3455555678999999999988542 456656666777888874333 3344444
No 8
>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.99 E-value=1.1e+02 Score=22.21 Aligned_cols=37 Identities=14% Similarity=0.315 Sum_probs=24.5
Q ss_pred EcCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEe
Q 016558 204 QNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLS 243 (387)
Q Consensus 204 QNkG~~~L~V~ItaPd~V~~~~~~L~L~K~qskKV~IS~s 243 (387)
.+.|...|.|.|..|..-.+ ++.|.+...-...|+|.
T Consensus 31 ~~ag~g~l~v~v~~p~g~~~---~~~v~d~~~G~y~v~f~ 67 (111)
T d2dmba1 31 KTAGKGKVTCTVLTPDGTEA---EADVIENEDGTYDIFYT 67 (111)
T ss_dssp SSSCSCCEEEEEECTTSCBC---CCEEEECTTSCEEEEEE
T ss_pred CCCCCCcEEEEEEECCCCEE---EeEEEECCCCEEEEEEE
Confidence 48899999999998854322 44444444445666666
No 9
>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.54 E-value=89 Score=22.36 Aligned_cols=43 Identities=9% Similarity=0.232 Sum_probs=30.9
Q ss_pred cceEEEEEcCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEec
Q 016558 197 GELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLSA 244 (387)
Q Consensus 197 ~~lsLLVQNkG~~~L~V~ItaPd~V~~~~~~L~L~K~qskKV~IS~s~ 244 (387)
..+.+-..+.|...|+|.|..|+.+ ++++.......-.|+|+-
T Consensus 23 ~~F~V~~~~aG~g~l~v~i~gp~~~-----~v~v~~~~dg~y~v~y~P 65 (98)
T d2di8a1 23 SDFIVDTRDAGYGGISLAVEGPSKV-----DIQTEDLEDGTCKVSYFP 65 (98)
T ss_dssp EEEEEECTTTCBCCEEEEEESSSCC-----CEECCBCTTSCEEEEECC
T ss_pred EEEEEEeCCCCCCceEEEEEeCCCc-----eEEEEECCCCEEEEEEEE
Confidence 3455555677899999999998543 466666666777888874
No 10
>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.85 E-value=99 Score=21.77 Aligned_cols=44 Identities=11% Similarity=0.266 Sum_probs=29.3
Q ss_pred cceEEEEEcCCCceEEEEEEcCccccCCCceeeecccceeEEEEEEe
Q 016558 197 GELTILVQNEGEKTLIVTITIPTAVENPLKQLKISKHQTQKINISLS 243 (387)
Q Consensus 197 ~~lsLLVQNkG~~~L~V~ItaPd~V~~~~~~L~L~K~qskKV~IS~s 243 (387)
..+.|...+.|...|+|.|+.|+.-. .+++|.....-.-.|+|+
T Consensus 25 ~~F~I~~~~ag~g~l~v~v~~p~g~~---v~~~v~~~~~g~y~v~y~ 68 (96)
T d1v05a_ 25 NSFTVDCSKAGTNMMMVGVHGPKTPC---EEVYVKHMGNRVYNVTYT 68 (96)
T ss_dssp EEEEEECTTSBSCCEEEEEECSSSCC---SEEEEEECSTTEEEEEEE
T ss_pred EEEEEEECCCCCCceEEEEEECCCCe---eeeEEEECCCCEEEEEEE
Confidence 34555567888889999999995422 245555555556666666
Done!