Query 016559
Match_columns 387
No_of_seqs 225 out of 1413
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:56:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06914 GT8_GNT1 GNT1 is a fun 100.0 1.5E-44 3.3E-49 349.4 18.8 246 31-300 1-274 (278)
2 PLN00176 galactinol synthase 100.0 7.2E-43 1.6E-47 344.9 20.9 231 24-278 16-294 (333)
3 cd02537 GT8_Glycogenin Glycoge 100.0 2.7E-40 5.9E-45 314.2 20.7 212 31-263 1-218 (240)
4 cd00505 Glyco_transf_8 Members 100.0 2.3E-32 5E-37 260.0 16.9 206 32-258 2-245 (246)
5 PF01501 Glyco_transf_8: Glyco 100.0 3.6E-31 7.7E-36 247.1 12.0 205 34-261 2-250 (250)
6 PRK15171 lipopolysaccharide 1, 100.0 1.4E-30 3.1E-35 259.0 16.1 218 34-277 28-288 (334)
7 cd04194 GT8_A4GalT_like A4GalT 100.0 7.8E-31 1.7E-35 249.0 13.0 201 34-258 3-247 (248)
8 cd06429 GT8_like_1 GT8_like_1 100.0 4E-28 8.7E-33 233.3 15.6 211 34-274 3-255 (257)
9 cd06431 GT8_LARGE_C LARGE cata 100.0 9.3E-28 2E-32 233.5 16.6 209 31-262 3-256 (280)
10 COG1442 RfaJ Lipopolysaccharid 100.0 1.1E-27 2.3E-32 236.4 16.5 217 34-276 5-262 (325)
11 cd06432 GT8_HUGT1_C_like The C 99.9 1.1E-22 2.4E-27 194.8 14.8 192 35-254 5-242 (248)
12 cd06430 GT8_like_2 GT8_like_2 99.9 8.1E-22 1.8E-26 192.9 17.1 214 36-280 6-274 (304)
13 PLN02523 galacturonosyltransfe 99.9 3.5E-21 7.6E-26 198.3 15.4 212 38-276 254-546 (559)
14 PLN02718 Probable galacturonos 99.8 3.9E-21 8.4E-26 200.1 11.5 199 38-262 319-578 (603)
15 PLN02659 Probable galacturonos 99.8 6.1E-20 1.3E-24 188.6 8.5 149 103-277 329-521 (534)
16 PLN02867 Probable galacturonos 99.8 6E-20 1.3E-24 189.3 7.5 146 103-274 330-520 (535)
17 PLN02870 Probable galacturonos 99.8 2.7E-19 5.9E-24 183.9 6.9 149 103-277 328-520 (533)
18 PLN02769 Probable galacturonos 99.8 1.6E-18 3.5E-23 181.3 12.3 149 103-277 437-618 (629)
19 COG5597 Alpha-N-acetylglucosam 99.8 6.7E-20 1.4E-24 176.1 1.6 205 28-262 68-341 (368)
20 PLN02829 Probable galacturonos 99.7 7.3E-18 1.6E-22 175.6 10.5 149 103-277 442-627 (639)
21 PLN02742 Probable galacturonos 99.7 4.8E-17 1E-21 167.7 14.0 220 29-277 226-523 (534)
22 PLN02910 polygalacturonate 4-a 99.7 4.9E-17 1.1E-21 169.3 7.7 147 103-275 460-643 (657)
23 KOG1950 Glycosyl transferase, 98.6 1.2E-08 2.5E-13 103.4 2.9 91 104-194 151-242 (369)
24 PF11051 Mannosyl_trans3: Mann 98.3 6.4E-06 1.4E-10 80.1 10.9 116 33-159 4-124 (271)
25 PF03407 Nucleotid_trans: Nucl 97.9 9.9E-05 2.2E-09 68.4 11.7 165 70-250 11-200 (212)
26 KOG1879 UDP-glucose:glycoprote 95.9 0.055 1.2E-06 61.7 10.8 200 26-258 1177-1424(1470)
27 KOG1928 Alpha-1,4-N-acetylgluc 93.1 0.098 2.1E-06 53.2 4.0 182 13-195 110-319 (409)
28 PLN03182 xyloglucan 6-xylosylt 91.3 0.67 1.5E-05 47.7 7.5 77 114-193 195-306 (429)
29 cd06439 CESA_like_1 CESA_like_ 84.7 4.7 0.0001 37.3 8.2 99 25-132 25-125 (251)
30 cd02515 Glyco_transf_6 Glycosy 84.6 6.5 0.00014 38.5 9.2 99 28-134 33-141 (271)
31 TIGR03111 glyc2_xrt_Gpos1 puta 83.7 4.5 9.7E-05 41.9 8.3 119 4-132 23-147 (439)
32 PF07801 DUF1647: Protein of u 83.0 9 0.00019 34.1 8.7 61 27-89 58-120 (142)
33 PF05637 Glyco_transf_34: gala 81.8 0.89 1.9E-05 43.6 2.1 91 103-194 58-193 (239)
34 PRK11204 N-glycosyltransferase 81.2 8.1 0.00018 39.3 9.0 96 28-132 53-150 (420)
35 cd02525 Succinoglycan_BP_ExoA 79.3 8.7 0.00019 35.0 7.8 93 31-131 2-96 (249)
36 TIGR03469 HonB hopene-associat 78.8 8.8 0.00019 39.0 8.3 101 27-132 38-149 (384)
37 cd04186 GT_2_like_c Subfamily 77.7 20 0.00043 30.1 9.1 82 43-132 9-90 (166)
38 PF00535 Glycos_transf_2: Glyc 75.0 9 0.0002 31.9 6.1 94 34-139 3-102 (169)
39 cd06421 CESA_CelA_like CESA_Ce 71.5 32 0.00069 31.1 9.3 95 30-131 2-99 (234)
40 cd00761 Glyco_tranf_GTA_type G 68.1 19 0.00041 29.0 6.4 82 43-133 9-94 (156)
41 PRK14583 hmsR N-glycosyltransf 67.9 15 0.00032 38.1 6.9 94 28-132 74-171 (444)
42 TIGR03472 HpnI hopanoid biosyn 67.3 37 0.0008 34.2 9.5 98 27-132 39-142 (373)
43 PLN03181 glycosyltransferase; 66.2 15 0.00033 38.2 6.4 87 104-193 181-307 (453)
44 cd04185 GT_2_like_b Subfamily 64.4 35 0.00076 30.2 7.9 82 46-132 12-95 (202)
45 PF04488 Gly_transf_sug: Glyco 63.9 3.7 8E-05 33.7 1.3 86 47-138 5-98 (103)
46 cd06423 CESA_like CESA_like is 62.8 38 0.00083 27.9 7.5 82 44-132 10-94 (180)
47 PRK05454 glucosyltransferase M 62.2 55 0.0012 36.4 10.3 101 26-132 121-236 (691)
48 cd06427 CESA_like_2 CESA_like_ 60.8 51 0.0011 30.5 8.6 96 30-132 2-100 (241)
49 PRK15382 non-LEE encoded effec 58.6 6.5 0.00014 38.0 2.0 47 117-163 211-260 (326)
50 cd04192 GT_2_like_e Subfamily 58.6 38 0.00082 30.3 7.1 83 44-132 10-98 (229)
51 PRK15384 type III secretion sy 58.6 6.1 0.00013 38.2 1.9 47 117-163 216-265 (336)
52 PRK11498 bcsA cellulose syntha 58.2 87 0.0019 35.7 11.1 95 28-132 259-355 (852)
53 PRK15383 type III secretion sy 57.8 6.7 0.00014 38.0 2.0 47 117-163 219-268 (335)
54 PRK10063 putative glycosyl tra 54.8 68 0.0015 30.4 8.5 94 30-133 2-99 (248)
55 PF10111 Glyco_tranf_2_2: Glyc 52.7 51 0.0011 31.8 7.3 89 44-138 17-111 (281)
56 cd06420 GT2_Chondriotin_Pol_N 52.7 57 0.0012 28.1 7.0 89 34-132 2-95 (182)
57 cd04184 GT2_RfbC_Mx_like Myxoc 51.4 63 0.0014 28.4 7.2 93 30-132 2-99 (202)
58 cd04196 GT_2_like_d Subfamily 49.2 58 0.0013 28.7 6.7 97 34-138 3-102 (214)
59 cd06433 GT_2_WfgS_like WfgS an 48.3 92 0.002 26.8 7.7 93 34-137 3-97 (202)
60 cd06434 GT2_HAS Hyaluronan syn 48.0 1.1E+02 0.0024 27.6 8.5 96 32-137 3-99 (235)
61 cd04195 GT2_AmsE_like GT2_AmsE 47.6 86 0.0019 27.5 7.5 81 45-132 14-96 (201)
62 cd02520 Glucosylceramide_synth 46.2 55 0.0012 29.1 6.1 97 30-131 2-101 (196)
63 cd06437 CESA_CaSu_A2 Cellulose 46.0 1.1E+02 0.0024 27.8 8.2 93 30-132 2-103 (232)
64 PF03414 Glyco_transf_6: Glyco 45.5 2.1E+02 0.0046 29.0 10.4 173 28-229 98-313 (337)
65 cd06438 EpsO_like EpsO protein 44.3 1.1E+02 0.0024 26.8 7.6 88 36-131 4-96 (183)
66 COG0463 WcaA Glycosyltransfera 43.3 1.2E+02 0.0025 24.9 7.3 94 29-132 3-98 (291)
67 PF05704 Caps_synth: Capsular 43.2 1.2E+02 0.0026 29.7 8.2 140 17-174 33-187 (276)
68 PF13704 Glyco_tranf_2_4: Glyc 41.7 66 0.0014 25.3 5.2 70 59-133 18-88 (97)
69 cd06442 DPM1_like DPM1_like re 41.5 49 0.0011 29.6 5.0 79 46-130 12-92 (224)
70 cd02514 GT13_GLCNAC-TI GT13_GL 40.9 1.5E+02 0.0033 29.9 8.8 104 32-137 3-118 (334)
71 cd02511 Beta4Glucosyltransfera 40.8 1.8E+02 0.0038 26.8 8.7 86 31-132 2-87 (229)
72 COG2247 LytB Putative cell wal 40.8 1.5E+02 0.0033 29.9 8.5 82 1-88 1-106 (337)
73 PRK10073 putative glycosyl tra 39.6 85 0.0018 31.2 6.7 95 29-132 6-101 (328)
74 PF01793 Glyco_transf_15: Glyc 39.5 90 0.0019 31.6 6.8 55 26-81 52-109 (328)
75 cd02510 pp-GalNAc-T pp-GalNAc- 39.0 1.1E+02 0.0023 29.5 7.1 97 36-138 5-106 (299)
76 cd06913 beta3GnTL1_like Beta 1 39.0 94 0.002 28.0 6.5 87 44-132 10-100 (219)
77 PF02485 Branch: Core-2/I-Bran 38.5 1.2E+02 0.0026 28.3 7.3 103 31-139 1-111 (244)
78 PF04765 DUF616: Protein of un 36.9 54 0.0012 32.8 4.7 100 27-138 61-174 (305)
79 PF03071 GNT-I: GNT-I family; 35.3 1.8E+02 0.004 30.6 8.5 108 28-139 92-214 (434)
80 COG1215 Glycosyltransferases, 35.2 2.4E+02 0.0053 28.3 9.4 98 29-132 54-153 (439)
81 PF03314 DUF273: Protein of un 33.7 27 0.00059 33.2 1.9 88 114-207 39-136 (222)
82 cd06435 CESA_NdvC_like NdvC_li 33.5 3.6E+02 0.0078 24.3 9.8 16 116-131 84-99 (236)
83 KOG1950 Glycosyl transferase, 33.1 16 0.00034 37.1 0.3 71 104-174 112-192 (369)
84 cd04179 DPM_DPG-synthase_like 32.0 91 0.002 26.8 5.0 88 45-138 11-102 (185)
85 KOG1349 Gpi-anchor transamidas 30.9 98 0.0021 30.4 5.2 52 22-73 19-77 (309)
86 PLN02726 dolichyl-phosphate be 29.5 1.6E+02 0.0035 27.2 6.5 96 27-129 7-106 (243)
87 cd06436 GlcNAc-1-P_transferase 29.3 1.8E+02 0.0038 25.9 6.5 34 45-79 11-44 (191)
88 TIGR03030 CelA cellulose synth 29.2 4.4E+02 0.0096 29.3 10.8 19 114-132 226-244 (713)
89 cd02071 MM_CoA_mut_B12_BD meth 24.9 4.1E+02 0.0089 22.2 7.9 78 5-84 15-104 (122)
90 COG2943 MdoH Membrane glycosyl 24.6 5.5E+02 0.012 28.1 9.8 100 27-132 142-256 (736)
91 TIGR00640 acid_CoA_mut_C methy 22.8 2.6E+02 0.0056 24.2 6.1 46 38-84 62-107 (132)
92 cd02522 GT_2_like_a GT_2_like_ 21.4 4.3E+02 0.0094 23.3 7.6 84 34-132 4-88 (221)
93 cd02526 GT2_RfbF_like RfbF is 21.2 2.1E+02 0.0045 25.8 5.5 21 116-136 75-96 (237)
94 PF04724 Glyco_transf_17: Glyc 20.5 7.8E+02 0.017 25.1 9.8 105 27-140 76-194 (356)
No 1
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=100.00 E-value=1.5e-44 Score=349.36 Aligned_cols=246 Identities=25% Similarity=0.369 Sum_probs=190.9
Q ss_pred EEEEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHH-------HHHhcCcEEEEeeeeCCCCCCCCcchh
Q 016559 31 QAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKK-------LLKADGWIVEKISLLENPNQVRPKRFW 103 (387)
Q Consensus 31 ~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~-------~L~~~g~~v~~I~~i~~p~~~~~~~~~ 103 (387)
+||||++||++|+|||+|+++||++++|++|+|+|+++++++.... .+.+.++.++.++.+..+. ...+|.
T Consensus 1 fAYvtl~Tn~~YL~gAlvL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~~--~~~~~~ 78 (278)
T cd06914 1 YAYVNYATNADYLCNALILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIASG--GDAYWA 78 (278)
T ss_pred CeEEEEecChhHHHHHHHHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccCCC--CCccHH
Confidence 6999999999999999999999999999999999999999875432 2334577787777655443 335677
Q ss_pred hhhhhhhccccccccEEEEEcCCeeecCCchHHhcCh-hh-hhccCCCCcccceEEEEeCCHHHHHHHHHHHHhcCC--C
Q 016559 104 GVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCR-KF-CANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGS--Y 179 (387)
Q Consensus 104 ~sy~KL~~~~L~eydRVLYLDaD~lVl~nLdeLF~l~-~~-~Aa~~~~~yfNSGVmvinps~~~~~~ile~~~~~~~--~ 179 (387)
.+|+||.+|++++||||||||||++|++||||||+++ .. .|+.....|||||||||+|+...|+++++.+.+..+ .
T Consensus 79 ~~~tKl~~~~l~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~Aap~~~~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~ 158 (278)
T cd06914 79 KSLTKLRAFNQTEYDRIIYFDSDSIIRHPMDELFFLPNYIKFAAPRAYWKFASHLMVIKPSKEAFKELMTEILPAYLNKK 158 (278)
T ss_pred HHHHHHHhccccceeeEEEecCChhhhcChHHHhcCCcccceeeecCcceecceeEEEeCCHHHHHHHHHHHHHhcccCC
Confidence 7899999999999999999999999999999999998 32 233333459999999999999999999999887533 3
Q ss_pred CCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCccccccc-ccccccccc--------c-----ccccccCC--CC
Q 016559 180 TGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTL-YNADVGLYM--------L-----ANKWMVDE--SE 243 (387)
Q Consensus 180 ~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~-YN~~~~~y~--------~-----~~~w~~~~--~~ 243 (387)
.++|||+||.+|.++.+. |.| ++..||.+ ||...|.+. . .++|+++. ++
T Consensus 159 ~~~DQdiLN~~~~~~~~~--~~~-------------~~~~Lp~~~y~llt~~~r~~~~~~~l~~~~~~~~~w~~~~~~~~ 223 (278)
T cd06914 159 NEYDMDLINEEFYNSKQL--FKP-------------SVLVLPHRQYGLLTGEFREKLHKSFLSNAQHLYEKWDPDDVFKE 223 (278)
T ss_pred CCCChHHHHHHHhCCccc--cCc-------------ceEEcCccccccCChhhcccCHHHhhccccccccccCHHHHHhh
Confidence 578999999999997321 222 35566654 666655321 1 34676543 89
Q ss_pred cEEEEeeCCCC-CCCCcccccCCCchhHHHHHHHHhhhcCCCCCCCCCCcchhhhhhh
Q 016559 244 LHVIHYTLGPL-KPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVL 300 (387)
Q Consensus 244 ~~IIHft~gp~-KPW~~w~~~~~~~~~~W~~~~~~l~~~~~g~~~~~~~~~~~~~~~l 300 (387)
+++||||+||. |||..++. +.+.+..+.|. ..++.+++++|++|.+|+.+
T Consensus 224 ~k~vHFSd~Pl~KPW~~~~~------~~~~~~~~~~~-~~~~~~~~~~c~~~~iW~~~ 274 (278)
T cd06914 224 SKVIHFSDSPLPKPWNYNNL------EDIYCIEKIYC-KMVKPRLEDDCRACDLWNSL 274 (278)
T ss_pred CeEEEecCCCCCCCcCCcCH------HHHHHhCCccc-cCCCCCccCcchHHHHHHHH
Confidence 99999999997 99999986 34444444432 12345567799999999988
No 2
>PLN00176 galactinol synthase
Probab=100.00 E-value=7.2e-43 Score=344.92 Aligned_cols=231 Identities=27% Similarity=0.454 Sum_probs=186.5
Q ss_pred CCCCCCCEEEEEEe-eCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCC---CC
Q 016559 24 IGSQSTDQAYVTLL-YGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQV---RP 99 (387)
Q Consensus 24 ~~~~~~~~Ayvt~~-tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~---~~ 99 (387)
....++++||||++ +|++|++|+++|++||+++++++++|++++++++++.++.|++.|+.+++|+.+.++... ..
T Consensus 16 ~~~~~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~~ 95 (333)
T PLN00176 16 ALAKPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAM 95 (333)
T ss_pred cccccCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCccccccccc
Confidence 33447899999976 578999999999999999999999999999999999999999999999998887655322 12
Q ss_pred cchhhhhhhhhccccccccEEEEEcCCeeecCCchHHhcChh--hhhcc--------------------------C----
Q 016559 100 KRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRK--FCANL--------------------------K---- 147 (387)
Q Consensus 100 ~~~~~sy~KL~~~~L~eydRVLYLDaD~lVl~nLdeLF~l~~--~~Aa~--------------------------~---- 147 (387)
.++..+|+||++|++++||||||||+|++|++||||||+++. ++|++ +
T Consensus 96 ~~~~i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~ 175 (333)
T PLN00176 96 AYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAE 175 (333)
T ss_pred chhhhhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhh
Confidence 344568999999999999999999999999999999999863 22211 0
Q ss_pred ----CCCcccceEEEEeCCHHHHHHHHHHHHhcCCCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCccccccc
Q 016559 148 ----HSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTL 223 (387)
Q Consensus 148 ----~~~yfNSGVmvinps~~~~~~ile~~~~~~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~ 223 (387)
.+.||||||||+||+..+++++++.+.......++|||+||.+|++ .|.+||..
T Consensus 176 ~g~~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~~----------------------~~~~Lp~~ 233 (333)
T PLN00176 176 LGPPPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRD----------------------IYKPIPPV 233 (333)
T ss_pred ccCCCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcC----------------------cEEECCch
Confidence 1359999999999999999999999887666778999999999998 47889999
Q ss_pred cccccccc-ccccccccCCCCcEEEEeeCCCCCCCCccccc-------CCCchhHHHHHHHHh
Q 016559 224 YNADVGLY-MLANKWMVDESELHVIHYTLGPLKPWDWWTSW-------LLKPVDVWQDIRVKL 278 (387)
Q Consensus 224 YN~~~~~y-~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~~-------~~~~~~~W~~~~~~l 278 (387)
||+..... ...+.|. .++++||||+.++.|||+.-... ....++.|++++.+-
T Consensus 234 YN~~~~~~~~~~~~~~--~~~vkIIHY~~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~ 294 (333)
T PLN00176 234 YNLVLAMLWRHPENVE--LDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDE 294 (333)
T ss_pred hcCchhhhhhChhhcc--cCCcEEEEeeCCCCCCCCCCCcccCCChHHHHHHHHHHHHHhccc
Confidence 99986543 2233343 57899999974457999853322 122357899998874
No 3
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=100.00 E-value=2.7e-40 Score=314.19 Aligned_cols=212 Identities=44% Similarity=0.766 Sum_probs=177.6
Q ss_pred EEEEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCC---CCcchhhhhh
Q 016559 31 QAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQV---RPKRFWGVYT 107 (387)
Q Consensus 31 ~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~---~~~~~~~sy~ 107 (387)
+||||+++|++|++++.|+++||++++++++++++++++++++.++.|++.+.++..++.++.+... ...++.++|+
T Consensus 1 ~ay~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 80 (240)
T cd02537 1 EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVEPIDPPDSANLLKRPRFKDTYT 80 (240)
T ss_pred CEEEEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEEEecCccCCcchhhhccchHHHHHhH
Confidence 5999999999999999999999999999999999999999999999999999888888877654321 1234467999
Q ss_pred hhhccccccccEEEEEcCCeeecCCchHHhcChh-hhhccC--CCCcccceEEEEeCCHHHHHHHHHHHHhcCCCCCChH
Q 016559 108 KLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRK-FCANLK--HSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQ 184 (387)
Q Consensus 108 KL~~~~L~eydRVLYLDaD~lVl~nLdeLF~l~~-~~Aa~~--~~~yfNSGVmvinps~~~~~~ile~~~~~~~~~~~DQ 184 (387)
||.+|++++||||||||+|++|++|||+||+++. ++|+.. .+.|||||||+++|+...++++++.+.+..++.++||
T Consensus 81 kl~~~~l~~~drvlylD~D~~v~~~i~~Lf~~~~~~~a~~d~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~DQ 160 (240)
T cd02537 81 KLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAAPDCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPSFDGGDQ 160 (240)
T ss_pred HHHhccccccceEEEEeCCeeEccCHHHHhCCCCceeeecccCccccccceEEEEcCCHHHHHHHHHHHhccCCCCCCCH
Confidence 9999999999999999999999999999999954 444332 2479999999999999999999999988766788999
Q ss_pred HHHHHHhcCCCCCcccCCCCCcccccCCCCCCcccccccccccccccccccccccCCCCcEEEEeeCCCCCCCCccccc
Q 016559 185 GFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSW 263 (387)
Q Consensus 185 diLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~~ 263 (387)
|+||.+|++.. .+..||..||+..+.+.....+....++++||||+ |+.|||+.++.+
T Consensus 161 diLN~~~~~~~--------------------~~~~l~~~yN~~~~~~~~~~~~~~~~~~~~iiHf~-g~~KPW~~~~~~ 218 (240)
T cd02537 161 GLLNSYFSDRG--------------------IWKRLPFTYNALKPLRYLHPEALWFGDEIKVVHFI-GGDKPWSWWRDP 218 (240)
T ss_pred HHHHHHHcCCC--------------------CEeECCcceeeehhhhccCchhhcccCCcEEEEEe-CCCCCCCCCcCC
Confidence 99999999831 27889999999876544322222246789999996 878999977665
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=2.3e-32 Score=259.96 Aligned_cols=206 Identities=28% Similarity=0.443 Sum_probs=151.4
Q ss_pred EEEEEeeCcchHHHHHHHHHHHHHhCCCCcE-EEEEcCCCCHHHHHHHHhc----CcEE--EEeeeeCCCCCCCC-cc-h
Q 016559 32 AYVTLLYGDEFLLGVRVLGKSIRDTGSNKDM-VVLVSDGVSDYSKKLLKAD----GWIV--EKISLLENPNQVRP-KR-F 102 (387)
Q Consensus 32 Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dl-VvLv~d~vs~e~~~~L~~~----g~~v--~~I~~i~~p~~~~~-~~-~ 102 (387)
+++++++|++|++++.|+++||++++++ ++ +++++++++++.++.|++. +..+ .+++.......... .+ .
T Consensus 2 ~i~~~a~d~~y~~~~~v~i~Sl~~~~~~-~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (246)
T cd00505 2 AIVIVATGDEYLRGAIVLMKSVLRHRTK-PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIK 80 (246)
T ss_pred eEEEEecCcchhHHHHHHHHHHHHhCCC-CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccc
Confidence 7899999999999999999999999876 33 4466788999999999874 2332 23321110000011 22 3
Q ss_pred hhhhhhhhccccc-cccEEEEEcCCeeecCCchHHhcCh---hhhhccC-------------------CCCcccceEEEE
Q 016559 103 WGVYTKLKIFNMT-NYKKVVYLDADTIVIKNIEDLFKCR---KFCANLK-------------------HSERLNSGVMVV 159 (387)
Q Consensus 103 ~~sy~KL~~~~L~-eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~~-------------------~~~yfNSGVmvi 159 (387)
..+|+||+++++. +|+||||||+|+||++||+|||+++ ..+|+.. ...||||||||+
T Consensus 81 ~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsGVmli 160 (246)
T cd00505 81 IVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSGVFVV 160 (246)
T ss_pred cceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeeeeEEE
Confidence 5789999999984 5999999999999999999999997 3333321 246999999999
Q ss_pred eCCHHHHHHHHHHHHh-----cCCCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCcccccccccccccccccc
Q 016559 160 EPSAAVFNDMMTKVNT-----LGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLA 234 (387)
Q Consensus 160 nps~~~~~~ile~~~~-----~~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~y~~~ 234 (387)
|++..+++++++...+ ..+..++|||+||.+|.+.. ..+..||.+||++.+.+...
T Consensus 161 nl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~~-------------------~~i~~L~~~wN~~~~~~~~~ 221 (246)
T cd00505 161 NLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQVP-------------------FIVKSLPCIWNVRLTGCYRS 221 (246)
T ss_pred echHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcCC-------------------CeEEECCCeeeEEecCcccc
Confidence 9999887777665432 23567899999999998841 14789999999986543211
Q ss_pred c-ccccCCCCcEEEEeeCCCCCCCC
Q 016559 235 N-KWMVDESELHVIHYTLGPLKPWD 258 (387)
Q Consensus 235 ~-~w~~~~~~~~IIHft~gp~KPW~ 258 (387)
. ......++++||||+ |+.|||+
T Consensus 222 ~~~~~~~~~~~~iiHy~-g~~KPW~ 245 (246)
T cd00505 222 LNCFKAFVKNAKVIHFN-GPTKPWN 245 (246)
T ss_pred ccchhhhcCCCEEEEeC-CCCCCCC
Confidence 1 112246799999995 8899996
No 5
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.97 E-value=3.6e-31 Score=247.09 Aligned_cols=205 Identities=27% Similarity=0.449 Sum_probs=144.5
Q ss_pred EEEeeCcchHHHHHHHHHHHHHhCCC-CcE-EEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCC----------CCCCcc
Q 016559 34 VTLLYGDEFLLGVRVLGKSIRDTGSN-KDM-VVLVSDGVSDYSKKLLKADGWIVEKISLLENPN----------QVRPKR 101 (387)
Q Consensus 34 vt~~tdd~Yl~~a~VL~~SL~~~ns~-~dl-VvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~----------~~~~~~ 101 (387)
+++++|++|+++++|++.||++++++ .++ +++++++++++.++.|++.+..+..+..+..+. .....+
T Consensus 2 i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T PF01501_consen 2 IVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRH 81 (250)
T ss_dssp EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTC
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhccccccc
Confidence 67889999999999999999999985 555 557888999999999988765442222111111 111223
Q ss_pred h-hhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcChh---hhhc---------------------cCCCCcccce
Q 016559 102 F-WGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCRK---FCAN---------------------LKHSERLNSG 155 (387)
Q Consensus 102 ~-~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~~---~~Aa---------------------~~~~~yfNSG 155 (387)
+ ..+|.|+.++++ ++||||||||+|++|++||++||+++. ++|+ .+...+||||
T Consensus 82 ~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fNsG 161 (250)
T PF01501_consen 82 FSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPYFNSG 161 (250)
T ss_dssp GGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTSEEEE
T ss_pred ccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCcccccccCc
Confidence 3 578999999999 999999999999999999999999752 2221 1356899999
Q ss_pred EEEEeCCHHHHHHHHHHHHh----c-CCCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCcccccccccccccc
Q 016559 156 VMVVEPSAAVFNDMMTKVNT----L-GSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGL 230 (387)
Q Consensus 156 Vmvinps~~~~~~ile~~~~----~-~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~ 230 (387)
||+++++....+++.+.+.+ . .....+||++||.+|.+ ++..||..||+..+.
T Consensus 162 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln~~~~~----------------------~~~~L~~~~N~~~~~ 219 (250)
T PF01501_consen 162 VMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILNIVFYG----------------------NIKPLPCRYNCQPSW 219 (250)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHHHHHTT----------------------GEEEEEGGGSEEHHH
T ss_pred EEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHHhhhccc----------------------eeEEECchhcccccc
Confidence 99999998776666655542 2 24678999999999997 478999999998765
Q ss_pred cccc-cccccCCCCcEEEEeeCCCCCCCCccc
Q 016559 231 YMLA-NKWMVDESELHVIHYTLGPLKPWDWWT 261 (387)
Q Consensus 231 y~~~-~~w~~~~~~~~IIHft~gp~KPW~~w~ 261 (387)
+... .......++++||||+ |+.|||..|+
T Consensus 220 ~~~~~~~~~~~~~~~~iiHy~-g~~KPW~~~~ 250 (250)
T PF01501_consen 220 YNQSDDYFNPILEDAKIIHYS-GPPKPWKSTS 250 (250)
T ss_dssp HHHTHHHHHHHGCC-SEEE---SSS-TTSTT-
T ss_pred ccccchhhHhhcCCeEEEEeC-CCCcCCCCCC
Confidence 4111 1111246799999995 8889999773
No 6
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=99.97 E-value=1.4e-30 Score=259.03 Aligned_cols=218 Identities=22% Similarity=0.332 Sum_probs=154.6
Q ss_pred EEEeeCcchHHHHHHHHHHHHHhCCCCcEE-EEEcCCCCHHHHHHHHhc----CcEEEEeeeeCCC--C-CCCCcch-hh
Q 016559 34 VTLLYGDEFLLGVRVLGKSIRDTGSNKDMV-VLVSDGVSDYSKKLLKAD----GWIVEKISLLENP--N-QVRPKRF-WG 104 (387)
Q Consensus 34 vt~~tdd~Yl~~a~VL~~SL~~~ns~~dlV-vLv~d~vs~e~~~~L~~~----g~~v~~I~~i~~p--~-~~~~~~~-~~ 104 (387)
+.+++|++|+.++.|++.||..+|++.++. .+++++++++.++.|++. +..+..+. ++.. . .....++ .+
T Consensus 28 Iv~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~-id~~~~~~~~~~~~~s~a 106 (334)
T PRK15171 28 IAYGIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYL-INCERLKSLPSTKNWTYA 106 (334)
T ss_pred EEEECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEE-eCHHHHhCCcccCcCCHH
Confidence 557889999999999999999998876553 356789999998887763 44443222 2110 0 0112234 57
Q ss_pred hhhhhhcccc-c-cccEEEEEcCCeeecCCchHHhcCh----hhhhcc---------------C----CCCcccceEEEE
Q 016559 105 VYTKLKIFNM-T-NYKKVVYLDADTIVIKNIEDLFKCR----KFCANL---------------K----HSERLNSGVMVV 159 (387)
Q Consensus 105 sy~KL~~~~L-~-eydRVLYLDaD~lVl~nLdeLF~l~----~~~Aa~---------------~----~~~yfNSGVmvi 159 (387)
+|.||.++++ + ++|||||||+|+||.+||++||+++ .++|++ + ...|||||||||
T Consensus 107 tY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~~~~~~~~~l~~~~~~~~YFNsGVlli 186 (334)
T PRK15171 107 TYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAEWWSKRAQSLQTPGLASGYFNSGFLLI 186 (334)
T ss_pred HHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchhHHHHHHHhcCCccccccceecceEEE
Confidence 8999999997 4 7999999999999999999999996 233321 1 125999999999
Q ss_pred eCCHHH----HHHHHHHHHhc---CCCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCccccccccccccccc-
Q 016559 160 EPSAAV----FNDMMTKVNTL---GSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLY- 231 (387)
Q Consensus 160 nps~~~----~~~ile~~~~~---~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~y- 231 (387)
|.+... .+++++.+.+. ..+.++|||+||.+|++ ++..||.+||++.+..
T Consensus 187 Nl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN~~~~~----------------------~~~~L~~~wN~~~~~~~ 244 (334)
T PRK15171 187 NIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLNILLAG----------------------KVKFIDAKYNTQFSLNY 244 (334)
T ss_pred cHHHHHHhhHHHHHHHHHhccccccceeecChhHHHHHHcC----------------------CeEECCHhhCCccchhH
Confidence 999754 44555555543 35678999999999998 4788999999876532
Q ss_pred ccccc-cccCCCCcEEEEeeCCCCCCCCcccccCCCchhHHHHHHHH
Q 016559 232 MLANK-WMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVK 277 (387)
Q Consensus 232 ~~~~~-w~~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~W~~~~~~ 277 (387)
..... .....++++||||+ |+.|||+.|+.+.. -+.|+++..+
T Consensus 245 ~~~~~~~~~~~~~p~IIHy~-G~~KPW~~~~~~~~--~~~f~~~~~~ 288 (334)
T PRK15171 245 ELKDSVINPVNDETVFIHYI-GPTKPWHSWADYPV--SQYFLKAKEA 288 (334)
T ss_pred HHHhcccccccCCCEEEEEC-CCCCCCCCCCCCch--HHHHHHHHhc
Confidence 11111 11234689999995 99999997765432 2455565555
No 7
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=99.97 E-value=7.8e-31 Score=249.02 Aligned_cols=201 Identities=28% Similarity=0.459 Sum_probs=149.4
Q ss_pred EEEeeCcchHHHHHHHHHHHHHhCCCCcE-EEEEcCCCCHHHHHHHHhc----CcEEEEeeeeCCCCCC----CCcch-h
Q 016559 34 VTLLYGDEFLLGVRVLGKSIRDTGSNKDM-VVLVSDGVSDYSKKLLKAD----GWIVEKISLLENPNQV----RPKRF-W 103 (387)
Q Consensus 34 vt~~tdd~Yl~~a~VL~~SL~~~ns~~dl-VvLv~d~vs~e~~~~L~~~----g~~v~~I~~i~~p~~~----~~~~~-~ 103 (387)
+.+++|++|+.++.+++.||+++++..++ +++++++++++.++.|++. +..+..++ ++.+... ...++ .
T Consensus 3 I~~~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~-i~~~~~~~~~~~~~~~~~ 81 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIK-IDNDDFKFFPATTDHISY 81 (248)
T ss_pred EEEEecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEE-cCHHHHhcCCcccccccH
Confidence 45778999999999999999999985444 2345678999999999885 44443222 2222111 12334 4
Q ss_pred hhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhhhcc------------------CCCCcccceEEEEeC
Q 016559 104 GVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFCANL------------------KHSERLNSGVMVVEP 161 (387)
Q Consensus 104 ~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~------------------~~~~yfNSGVmvinp 161 (387)
.+|.||+++++ ++|+||||||+|++|++||++||+++ ..+|+. ....||||||||+|+
T Consensus 82 ~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGv~l~nl 161 (248)
T cd04194 82 ATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFNSGVLLINL 161 (248)
T ss_pred HHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCcccceeeecchheeH
Confidence 68999999997 56999999999999999999999996 233332 135799999999999
Q ss_pred CHHH----HHHHHHHHHhcC-CCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCccccccccccccccccccc-
Q 016559 162 SAAV----FNDMMTKVNTLG-SYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLAN- 235 (387)
Q Consensus 162 s~~~----~~~ile~~~~~~-~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~y~~~~- 235 (387)
+... .+++++.+.+.. .+.++|||+||.+|.+ ++..||..||+..+.+....
T Consensus 162 ~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~----------------------~~~~L~~~~N~~~~~~~~~~~ 219 (248)
T cd04194 162 KKWREENITEKLLELIKEYGGRLIYPDQDILNAVLKD----------------------KILYLPPRYNFQTGFYYLLKK 219 (248)
T ss_pred HHHHHhhhHHHHHHHHHhCCCceeeCChHHHHHHHhC----------------------CeEEcCcccccchhHhHHhhc
Confidence 9644 556666666543 4678999999999998 37889999999877543221
Q ss_pred ------ccccCCCCcEEEEeeCCCCCCCC
Q 016559 236 ------KWMVDESELHVIHYTLGPLKPWD 258 (387)
Q Consensus 236 ------~w~~~~~~~~IIHft~gp~KPW~ 258 (387)
......++++||||+ |+.|||+
T Consensus 220 ~~~~~~~~~~~~~~~~iiHf~-g~~KPW~ 247 (248)
T cd04194 220 KSKEEQELEEARKNPVIIHYT-GSDKPWN 247 (248)
T ss_pred cchhHHHHHHHhcCCEEEEeC-CCCCCCC
Confidence 112246799999995 8889996
No 8
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.95 E-value=4e-28 Score=233.35 Aligned_cols=211 Identities=16% Similarity=0.172 Sum_probs=145.7
Q ss_pred EEEeeCcchHHHHHHHHHHHHHhCCC-CcEEE-EEcCCCCHHHHHHHHhc----CcEE--EEeeeeC---CCC--C----
Q 016559 34 VTLLYGDEFLLGVRVLGKSIRDTGSN-KDMVV-LVSDGVSDYSKKLLKAD----GWIV--EKISLLE---NPN--Q---- 96 (387)
Q Consensus 34 vt~~tdd~Yl~~a~VL~~SL~~~ns~-~dlVv-Lv~d~vs~e~~~~L~~~----g~~v--~~I~~i~---~p~--~---- 96 (387)
+.+++| +|+ +++|.+.|+..+|++ .++++ +++++++.+.++.+.+. +.++ ..++... ... .
T Consensus 3 iv~~~D-n~l-~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 3 VVIFSD-NRL-AAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred EEEEec-chh-HHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 345667 999 566677777777765 67654 78899998888877653 3333 3332110 000 0
Q ss_pred -----------CCCcch-hhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhhhccCCCCcccceEEEEe
Q 016559 97 -----------VRPKRF-WGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFCANLKHSERLNSGVMVVE 160 (387)
Q Consensus 97 -----------~~~~~~-~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~~~~~yfNSGVmvin 160 (387)
.+++.+ ..+|.||.++++ ++++||||||+|+||.+||+|||+++ ..+||+.+ ||||||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d--yfNsGV~lin 158 (257)
T cd06429 81 ESEADTSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET--SWNPGVNVVN 158 (257)
T ss_pred hccccccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh--hcccceEEEe
Confidence 123444 478999999996 78999999999999999999999996 35666666 9999999999
Q ss_pred CCHHHHH----HHHHHHHhcC-----CCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCccccccccccccccc
Q 016559 161 PSAAVFN----DMMTKVNTLG-----SYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLY 231 (387)
Q Consensus 161 ps~~~~~----~ile~~~~~~-----~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~y 231 (387)
+++...+ ++++.+.... ....+|||+||..|.+ ++..||..||...-.+
T Consensus 159 l~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~----------------------~~~~L~~~wN~~~l~~ 216 (257)
T cd06429 159 LTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYG----------------------LTSPLDPSWHVRGLGY 216 (257)
T ss_pred HHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccC----------------------eeEECChHHcccCCcc
Confidence 9975543 3444443321 1456899999999998 4788999999863112
Q ss_pred ccccccccCCCCcEEEEeeCCCCCCCCcccccCCCchhHHHHH
Q 016559 232 MLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDI 274 (387)
Q Consensus 232 ~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~W~~~ 274 (387)
..... ....++++||||+ |+.|||+.|..... -+.|+.+
T Consensus 217 ~~~~~-~~~~~~~~IIHy~-G~~KPW~~~~~~~~--~~~w~~y 255 (257)
T cd06429 217 NYGIR-PQDIKAAAVLHFN-GNMKPWLRTAIPSY--KELWEKY 255 (257)
T ss_pred ccccc-ccccCCcEEEEEC-CCCCCcCCCCCChH--HHHHHHH
Confidence 11111 1235689999995 99999998864321 2567654
No 9
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=99.95 E-value=9.3e-28 Score=233.51 Aligned_cols=209 Identities=19% Similarity=0.160 Sum_probs=141.8
Q ss_pred EEEEEEeeCcchHHHHHHHHHHHHHhCCCCcE-EEEEcCCCCHHHHHHHHhc----CcEEEEeeee--CCC-CCCCCcch
Q 016559 31 QAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDM-VVLVSDGVSDYSKKLLKAD----GWIVEKISLL--ENP-NQVRPKRF 102 (387)
Q Consensus 31 ~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dl-VvLv~d~vs~e~~~~L~~~----g~~v~~I~~i--~~p-~~~~~~~~ 102 (387)
.|+|+.. ++|++++.|++.||.+++. .++ +.+++++++++..+.|.+. ++++..+++- ... ......++
T Consensus 3 ~~iv~~~--~~y~~~~~~~i~Sil~n~~-~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~ 79 (280)
T cd06431 3 VAIVCAG--YNASRDVVTLVKSVLFYRR-NPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKHY 79 (280)
T ss_pred EEEEEcc--CCcHHHHHHHHHHHHHcCC-CCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccCcccch
Confidence 3555444 8999999999999999874 444 3367789999998888753 4444433321 011 00112234
Q ss_pred hh--hhhhhhcccc-c-cccEEEEEcCCeeecCCchHHhcC-----hh-hhhccC-------------------CCCccc
Q 016559 103 WG--VYTKLKIFNM-T-NYKKVVYLDADTIVIKNIEDLFKC-----RK-FCANLK-------------------HSERLN 153 (387)
Q Consensus 103 ~~--sy~KL~~~~L-~-eydRVLYLDaD~lVl~nLdeLF~l-----~~-~~Aa~~-------------------~~~yfN 153 (387)
.. +|.||.++++ + ++|||||||+|+||++||+|||++ +. ++|++. ...|||
T Consensus 80 s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~yFN 159 (280)
T cd06431 80 SGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGFN 159 (280)
T ss_pred hhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchhhhhhhhhhccCCCccccccee
Confidence 32 5689999996 4 699999999999999999999987 11 222210 124999
Q ss_pred ceEEEEeCCHHHHHHHHHHH----Hh----cCCCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCccccccccc
Q 016559 154 SGVMVVEPSAAVFNDMMTKV----NT----LGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYN 225 (387)
Q Consensus 154 SGVmvinps~~~~~~ile~~----~~----~~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN 225 (387)
||||+||.++...+++.+.+ .+ .....++|||+||.++.+... .+..||.+||
T Consensus 160 sGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~~~~-------------------~~~~L~~~wN 220 (280)
T cd06431 160 TGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPF-------------------LVYQLPCAWN 220 (280)
T ss_pred eeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcCCcc-------------------eeEECCCccc
Confidence 99999999975544443332 22 235678999999999998410 2678999999
Q ss_pred ccccccccccccccCCCCcEEEEeeCCCCCCCCcccc
Q 016559 226 ADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTS 262 (387)
Q Consensus 226 ~~~~~y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~ 262 (387)
++.+.....+.-....++++||||+ |+.|||..-+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~p~IIHf~-g~~KPW~~~~~ 256 (280)
T cd06431 221 VQLSDHTRSEQCYRDVSDLKVIHWN-SPKKLRVKNKH 256 (280)
T ss_pred cccCccchHhHhhcCcCCCEEEEeC-CCCCCCCcCCC
Confidence 9865432221111135789999996 99999986543
No 10
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.1e-27 Score=236.43 Aligned_cols=217 Identities=24% Similarity=0.366 Sum_probs=157.3
Q ss_pred EEEeeCcchHHHHHHHHHHHHHhCC--CCcEEEEEcCCCCHHHHHHHHhc----CcEE--EEeeeeCCCC-CC-CCcchh
Q 016559 34 VTLLYGDEFLLGVRVLGKSIRDTGS--NKDMVVLVSDGVSDYSKKLLKAD----GWIV--EKISLLENPN-QV-RPKRFW 103 (387)
Q Consensus 34 vt~~tdd~Yl~~a~VL~~SL~~~ns--~~dlVvLv~d~vs~e~~~~L~~~----g~~v--~~I~~i~~p~-~~-~~~~~~ 103 (387)
+.++.|.+|+.+++|.++|+..++. .+.+.+++ +++++|+++.|++. +..+ ..++ ++... .. ...+|.
T Consensus 5 Iv~a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~-~~i~~e~~~~l~~~~~~f~~~i~~~~id-~~~~~~~~~~~~~~s 82 (325)
T COG1442 5 IAFAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILV-DGLNEEDKKKLNETAEPFKSFIVLEVID-IEPFLDYPPFTKRFS 82 (325)
T ss_pred EEEEcccccchhHHHHHHHHHHhCccccEEEEEEe-cCCCHHHHHHHHHHHHhhccceeeEEEe-chhhhcccccccchH
Confidence 4588999999999999999999999 45555544 78999999988873 3322 2221 11111 11 235564
Q ss_pred -hhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhhhcc-------------------CCCCcccceEEEE
Q 016559 104 -GVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFCANL-------------------KHSERLNSGVMVV 159 (387)
Q Consensus 104 -~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~-------------------~~~~yfNSGVmvi 159 (387)
.+|.|+++.++ ++|||+||||+|++|++++++||+++ ...||+ ....|||||||++
T Consensus 83 ~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~~~~~~~~~~~~~~~~~yFNaG~lli 162 (325)
T COG1442 83 KMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHYMKEGALRLEKGDLEGSYFNAGVLLI 162 (325)
T ss_pred HHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhhhhhhhhHhhhcccccccCccceeee
Confidence 78999999998 89999999999999999999999997 222221 2468999999999
Q ss_pred eCCHHH----HHHHHHHHHhc-CCCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCcccccccccccccccc-c
Q 016559 160 EPSAAV----FNDMMTKVNTL-GSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYM-L 233 (387)
Q Consensus 160 nps~~~----~~~ile~~~~~-~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~y~-~ 233 (387)
|.+.+. ++++++...+. ..+..+|||+||.+|++ ++..||..||++.+.-. .
T Consensus 163 nl~~W~~~~i~~k~i~~~~~~~~~~~~~DQdiLN~i~~~----------------------~~~~L~~~YN~~~~~~~~~ 220 (325)
T COG1442 163 NLKLWREENIFEKLIELLKDKENDLLYPDQDILNMIFED----------------------RVLELPIRYNAIPYIDSQL 220 (325)
T ss_pred hHHHHHHhhhHHHHHHHHhccccccCCccccHHHHHHHh----------------------hhhccCcccceeehhhhcc
Confidence 999754 45555555433 46788999999999999 47889999999876421 1
Q ss_pred ccc-cccCCCCcEEEEeeCCCCCCCCcccccCCCchhHHHHHHH
Q 016559 234 ANK-WMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRV 276 (387)
Q Consensus 234 ~~~-w~~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~W~~~~~ 276 (387)
... -.....++.++||+ |+.|||+-|+..... ...|.++..
T Consensus 221 ~~~~~~~~~~~~~iiHy~-g~~KPW~~~~~~~~~-~~~w~~i~~ 262 (325)
T COG1442 221 KDKYIYPFGDDPVILHYA-GPTKPWHSDSSNYPR-SHEWHEILA 262 (325)
T ss_pred chhhhccCCCCceEEEec-CCCCCCcCccccccH-HHHHHHHHh
Confidence 111 12357889999995 888999988754321 245666554
No 11
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=99.89 E-value=1.1e-22 Score=194.80 Aligned_cols=192 Identities=17% Similarity=0.119 Sum_probs=133.5
Q ss_pred EEeeCcchHHHHHHHHHHHHHhCCCCcE-EEEEcCCCCHHHHHHHHhc----CcEEEEeeeeCCCCCCC----Ccchhhh
Q 016559 35 TLLYGDEFLLGVRVLGKSIRDTGSNKDM-VVLVSDGVSDYSKKLLKAD----GWIVEKISLLENPNQVR----PKRFWGV 105 (387)
Q Consensus 35 t~~tdd~Yl~~a~VL~~SL~~~ns~~dl-VvLv~d~vs~e~~~~L~~~----g~~v~~I~~i~~p~~~~----~~~~~~s 105 (387)
+.++++.|+.++.|++.||.+++. .++ +.++++++|++.++.|++. +..+..+.+ +.|.... ..+...+
T Consensus 5 ~~~~~~~y~~~~~v~l~Sll~nn~-~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i-~~~~~~~~~~~~~~~~~~ 82 (248)
T cd06432 5 SVASGHLYERFLRIMMLSVMKNTK-SPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTY-KWPRWLHKQTEKQRIIWG 82 (248)
T ss_pred EEcCcHHHHHHHHHHHHHHHHcCC-CCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEe-cChhhhhcccccchhHHH
Confidence 347788999999999999999874 344 2355579999998888763 555544433 2121111 1111235
Q ss_pred hhhhhccc-cc-cccEEEEEcCCeeecCCchHHhcCh---hhhhcc------------------------CCCCcccceE
Q 016559 106 YTKLKIFN-MT-NYKKVVYLDADTIVIKNIEDLFKCR---KFCANL------------------------KHSERLNSGV 156 (387)
Q Consensus 106 y~KL~~~~-L~-eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~------------------------~~~~yfNSGV 156 (387)
|.+|.+.. |+ ++|||||||+|++|.+||++||+++ .++|++ +...||||||
T Consensus 83 y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNSGV 162 (248)
T cd06432 83 YKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHISAL 162 (248)
T ss_pred HHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccceee
Confidence 77777775 44 6999999999999999999999986 333332 1124999999
Q ss_pred EEEeCCHHHHHHHHH----HHH---hc-CCCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCcccccccccccc
Q 016559 157 MVVEPSAAVFNDMMT----KVN---TL-GSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADV 228 (387)
Q Consensus 157 mvinps~~~~~~ile----~~~---~~-~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~ 228 (387)
|+||.++.+.+.+.+ .+. +. .++.++|||+||.++.+. ++..||.+||+.-
T Consensus 163 mliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN~v~~~~---------------------~i~~Lp~~w~~~~ 221 (248)
T cd06432 163 YVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPNNMQHQV---------------------PIFSLPQEWLWCE 221 (248)
T ss_pred EEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhHHHhccC---------------------CeEECChHHHHHH
Confidence 999999766555444 222 22 346789999999999873 3788999999853
Q ss_pred cccccccccccCCCCcEEEEeeCCCC
Q 016559 229 GLYMLANKWMVDESELHVIHYTLGPL 254 (387)
Q Consensus 229 ~~y~~~~~w~~~~~~~~IIHft~gp~ 254 (387)
+ -.++...+.+++|||+-.|.
T Consensus 222 ~-----~~~~~~~~~~~~~~~~~~~~ 242 (248)
T cd06432 222 T-----WCSDESKKKAKTIDLCNNPL 242 (248)
T ss_pred H-----HhcccccCccceeecccCCC
Confidence 2 11233567899999975443
No 12
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.88 E-value=8.1e-22 Score=192.88 Aligned_cols=214 Identities=15% Similarity=0.196 Sum_probs=140.7
Q ss_pred EeeCcchHHHHHHHHHHHHHhCCCCcE--EEEEcCCCCHHHHHHHHhc---CcEE--EEeeeeCCCCCCCCcch-----h
Q 016559 36 LLYGDEFLLGVRVLGKSIRDTGSNKDM--VVLVSDGVSDYSKKLLKAD---GWIV--EKISLLENPNQVRPKRF-----W 103 (387)
Q Consensus 36 ~~tdd~Yl~~a~VL~~SL~~~ns~~dl--VvLv~d~vs~e~~~~L~~~---g~~v--~~I~~i~~p~~~~~~~~-----~ 103 (387)
++++++ +..+.++++|+..++ +.++ .++..+.++++.+++|++. +... ..+..+..|... ...| .
T Consensus 6 v~~g~~-~~~~~~~lkSil~~n-~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~-~~~ws~l~~~ 82 (304)
T cd06430 6 VACGER-LEETLTMLKSAIVFS-QKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGN-AAEWKKLFKP 82 (304)
T ss_pred EEcCCc-HHHHHHHHHHHHHhC-CCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccc-hhhhhhcccH
Confidence 445554 899999999999987 4455 4444444888888778764 1111 133334444321 1122 2
Q ss_pred hhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcC--h--h--hhhccC---------------C----CCcccceEE
Q 016559 104 GVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKC--R--K--FCANLK---------------H----SERLNSGVM 157 (387)
Q Consensus 104 ~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l--~--~--~~Aa~~---------------~----~~yfNSGVm 157 (387)
.+|.||.++++ +++|||||||+|++|++||+|||++ + . ++|+.+ . ..+||||||
T Consensus 83 ~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~~~~~~~~~~~~~~~~~~gFNSGVm 162 (304)
T cd06430 83 CAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPNIGWYNRFARHPYYGKTGVNSGVM 162 (304)
T ss_pred HHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecccccchhhhhhhcccCccccccccccee
Confidence 57999999986 7899999999999999999999987 3 1 333311 1 135999999
Q ss_pred EEeCCHHHH---------------HHHHHHHHhc-CCCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCccccc
Q 016559 158 VVEPSAAVF---------------NDMMTKVNTL-GSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLS 221 (387)
Q Consensus 158 vinps~~~~---------------~~ile~~~~~-~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp 221 (387)
+||.+.... +++++.+.+. ..+.++|||+||.+|.+... .+..||
T Consensus 163 LmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~DQDiLN~v~~~~p~-------------------~~~~Lp 223 (304)
T cd06430 163 LMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKITWGDQDLINIIFHHNPE-------------------MLYVFP 223 (304)
T ss_pred eeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcccCCCCCCHHHHHHHHcCCCC-------------------eEEEcC
Confidence 999997443 3455566554 35778999999999998421 478899
Q ss_pred ccccccccccccccccc-cCCCCcEEEEeeCCCCCCCCcccccCCCchhHHHHHHHHhhh
Q 016559 222 TLYNADVGLYMLANKWM-VDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEE 280 (387)
Q Consensus 222 ~~YN~~~~~y~~~~~w~-~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~W~~~~~~l~~ 280 (387)
.+||++.+.-..+.... .+.+.++|||.+ ++.| + . .. ....+.++...++
T Consensus 224 ~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n-~~~~--~--~-~~---~~~f~~~~~~~~~ 274 (304)
T cd06430 224 CHWNYRPDHCMYGSNCKAAEEEGVFILHGN-RGVY--H--S-DK---QPAFRAVYEAIRE 274 (304)
T ss_pred ccccCCccceeecccccccccccceEEEcC-CCCC--C--C-cc---chHHHHHHHHHHh
Confidence 99998765322122121 245789999997 4444 1 1 11 2334566666654
No 13
>PLN02523 galacturonosyltransferase
Probab=99.86 E-value=3.5e-21 Score=198.35 Aligned_cols=212 Identities=19% Similarity=0.241 Sum_probs=141.0
Q ss_pred eCcchHHHHHHHHHHHHHh-CCCCcEEE-EEcCCCCHHHHHHHHhc----CcE--EEEeee---eCC---CC-----C--
Q 016559 38 YGDEFLLGVRVLGKSIRDT-GSNKDMVV-LVSDGVSDYSKKLLKAD----GWI--VEKISL---LEN---PN-----Q-- 96 (387)
Q Consensus 38 tdd~Yl~~a~VL~~SL~~~-ns~~dlVv-Lv~d~vs~e~~~~L~~~----g~~--v~~I~~---i~~---p~-----~-- 96 (387)
.+|| +.++.|.+.|+..| ++..++|+ ++||+++...++.+-.. +.. +..|+. +.. |- .
T Consensus 254 fSdN-vlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln~~~~pvlk~l~s~~ 332 (559)
T PLN02523 254 FSDN-VIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLNSSYVPVLRQLESAN 332 (559)
T ss_pred ecCc-chhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhcccccchHHHhhhhhh
Confidence 3445 89999999999998 45556654 88999998877766543 223 334432 110 10 0
Q ss_pred ---------------------CC-Ccch-hhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhhhccC--
Q 016559 97 ---------------------VR-PKRF-WGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFCANLK-- 147 (387)
Q Consensus 97 ---------------------~~-~~~~-~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~~-- 147 (387)
.+ ++.+ ..+|.||.++++ ++++||||||+|+||.+||++||+++ +.+|++.
T Consensus 333 ~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~iDL~gkv~aAVeDc 412 (559)
T PLN02523 333 LQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETC 412 (559)
T ss_pred hhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHhCcCCCceEEEehhh
Confidence 00 1111 357899999997 78999999999999999999999986 2333221
Q ss_pred -----------------CCCcccc-------eEEEEeCCHHHHHHHHHHHH----hcCCCCCChHHHHH---HHhcCCCC
Q 016559 148 -----------------HSERLNS-------GVMVVEPSAAVFNDMMTKVN----TLGSYTGGDQGFLN---SYYSDFPN 196 (387)
Q Consensus 148 -----------------~~~yfNS-------GVmvinps~~~~~~ile~~~----~~~~~~~~DQdiLN---~~f~d~~~ 196 (387)
...|||+ ||||||.+++..+++.+.+. ........|||.|| ..|.+
T Consensus 413 ~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~~ln~~~~l~DqdaLpp~LivF~g--- 489 (559)
T PLN02523 413 FGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRTLWKLGTLPPGLITFYS--- 489 (559)
T ss_pred hhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHHHhccccccccccccchHHHHhcC---
Confidence 0136666 99999999877666665543 12345678999996 78887
Q ss_pred CcccCCCCCcccccCCCCCCcccccccccccccccccccccccCCCCcEEEEeeCCCCCCCCcccccCCCchhHHHHHHH
Q 016559 197 AHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRV 276 (387)
Q Consensus 197 ~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~W~~~~~ 276 (387)
++..|+..||...-.|.. .......+++.||||+ |+.|||..+..... -+.|..+..
T Consensus 490 -------------------ri~~LD~rWNvlglGy~~-~i~~~~i~~paIIHYn-G~~KPWle~~i~~y--r~~W~kYl~ 546 (559)
T PLN02523 490 -------------------TTKPLDKSWHVLGLGYNP-SISMDEIRNAAVIHFN-GNMKPWLDIAMNQF--KPLWTKYVD 546 (559)
T ss_pred -------------------ceEecCchhhccCCccCC-CccccccCCCEEEEEC-CCCCccccCCCCcc--hHHHHHHHc
Confidence 367788888864321211 1111245789999995 99999986654322 256766543
No 14
>PLN02718 Probable galacturonosyltransferase
Probab=99.85 E-value=3.9e-21 Score=200.05 Aligned_cols=199 Identities=15% Similarity=0.145 Sum_probs=135.7
Q ss_pred eCcchHHHHHHHHHHHHHh--CCCCcEEE-EEcCCCCHHHHHHHHhc----CcEE--EEeeeeCC-CCC----------C
Q 016559 38 YGDEFLLGVRVLGKSIRDT--GSNKDMVV-LVSDGVSDYSKKLLKAD----GWIV--EKISLLEN-PNQ----------V 97 (387)
Q Consensus 38 tdd~Yl~~a~VL~~SL~~~--ns~~dlVv-Lv~d~vs~e~~~~L~~~----g~~v--~~I~~i~~-p~~----------~ 97 (387)
.+|+|+ ++.|++.|+..| ++. ++++ +++++++.+.++.+... +..+ ..++.... |.. .
T Consensus 319 ~sDNvl-aasVvInSil~Ns~np~-~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s~ 396 (603)
T PLN02718 319 FSDNVL-ACSVVVNSTISSSKEPE-KIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQNSH 396 (603)
T ss_pred EcCCce-eEEEEhhhhhhccCCCC-cEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhhhcccc
Confidence 355674 999999999998 344 5544 78899999998877654 2333 22321111 110 1
Q ss_pred CCcch-hhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhhhcc--------------------------
Q 016559 98 RPKRF-WGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFCANL-------------------------- 146 (387)
Q Consensus 98 ~~~~~-~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~-------------------------- 146 (387)
+++.+ ..+|.||.++++ ++++||||||+|+||.+||++||+++ ..+|++
T Consensus 397 ~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~ 476 (603)
T PLN02718 397 DPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAK 476 (603)
T ss_pred ccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccchhhhc
Confidence 12233 468999999986 78999999999999999999999986 222221
Q ss_pred ---CCCCcccceEEEEeCCHHHHHHHH----HHHHhcCCCCCChHHHHH---HHhcCCCCCcccCCCCCcccccCCCCCC
Q 016559 147 ---KHSERLNSGVMVVEPSAAVFNDMM----TKVNTLGSYTGGDQGFLN---SYYSDFPNAHVFEPNLPLEVVNTRPVPN 216 (387)
Q Consensus 147 ---~~~~yfNSGVmvinps~~~~~~il----e~~~~~~~~~~~DQdiLN---~~f~d~~~~~~f~p~~~~~~~~~~p~~~ 216 (387)
+...|||+||||||++++..+++. .++.........|||.|| .+|.+ +
T Consensus 477 ~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~dqdaLpp~LlvF~g----------------------r 534 (603)
T PLN02718 477 KFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLWKAGSLPIGWLTFYN----------------------Q 534 (603)
T ss_pred ccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCccccCcccccHHHHHhcC----------------------c
Confidence 123678999999999986655443 444444333567999997 88888 3
Q ss_pred cccccccccccccccccccccccCCCCcEEEEeeCCCCCCCCcccc
Q 016559 217 MERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTS 262 (387)
Q Consensus 217 ~~~Lp~~YN~~~~~y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~ 262 (387)
+..|+..||...-.|... ......+++.||||+ |+.|||.....
T Consensus 535 i~~LD~rWNv~gLG~~~~-i~~~~i~~aaIIHYn-G~~KPWle~~i 578 (603)
T PLN02718 535 TVALDKRWHVLGLGHESG-VGASDIEQAAVIHYD-GVMKPWLDIGI 578 (603)
T ss_pred eeecChHHhccCcccccc-ccccccCCCEEEEEC-CCCCccccCCh
Confidence 778899999653212111 111246789999995 99999986543
No 15
>PLN02659 Probable galacturonosyltransferase
Probab=99.80 E-value=6.1e-20 Score=188.64 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=107.5
Q ss_pred hhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhhhccC-------------------------------
Q 016559 103 WGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFCANLK------------------------------- 147 (387)
Q Consensus 103 ~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~~------------------------------- 147 (387)
.-+|.||.++++ ++++||||||+|+||.+||++||+++ +.+||+.
T Consensus 329 ~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~ 408 (534)
T PLN02659 329 VMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDP 408 (534)
T ss_pred HHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCc
Confidence 457999999987 78999999999999999999999996 2222211
Q ss_pred CCCcccceEEEEeCCHHH----HHHHHHHHHhc--CCCCCChHHHH---HHHhcCCCCCcccCCCCCcccccCCCCCCcc
Q 016559 148 HSERLNSGVMVVEPSAAV----FNDMMTKVNTL--GSYTGGDQGFL---NSYYSDFPNAHVFEPNLPLEVVNTRPVPNME 218 (387)
Q Consensus 148 ~~~yfNSGVmvinps~~~----~~~ile~~~~~--~~~~~~DQdiL---N~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~ 218 (387)
...|||||||+||.+++. .+++++.+.+. ......|||+| |.+|.+ ++.
T Consensus 409 ~~cYfNsGVlLINLk~WRe~nITek~l~~l~~n~~~~l~l~DQdaLp~~LivF~g----------------------~v~ 466 (534)
T PLN02659 409 NECAWAYGMNIFDLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHG----------------------HVH 466 (534)
T ss_pred cccceecceeEeeHHHHHhcChHHHHHHHHHhcccccccccccccchHHHHHhcC----------------------CEE
Confidence 235788999999999765 44455555543 23567899999 588988 477
Q ss_pred cccccccccccccccccccccCCCCcEEEEeeCCCCCCCCcccccCCCchhHHHHHHHH
Q 016559 219 RLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVK 277 (387)
Q Consensus 219 ~Lp~~YN~~~~~y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~W~~~~~~ 277 (387)
.|+.+||...-.|...... ...+++.||||+ |+.|||..|..... -+.|..+...
T Consensus 467 ~LD~rWN~~gLg~~~~~~~-~~i~~paIIHYn-G~~KPW~~~~~~~y--r~~W~kYl~~ 521 (534)
T PLN02659 467 VIDPFWHMLGLGYQENTSL-ADAESAGVVHFN-GRAKPWLDIAFPQL--RPLWAKYIDS 521 (534)
T ss_pred ECChhheecCCcccccccc-cccCCcEEEEEC-CCCCccccccCCcc--hhHHHHHhcc
Confidence 8899999743222222111 145789999995 99999999876533 2567666543
No 16
>PLN02867 Probable galacturonosyltransferase
Probab=99.80 E-value=6e-20 Score=189.32 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=104.6
Q ss_pred hhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhhhcc-------------------------------C
Q 016559 103 WGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFCANL-------------------------------K 147 (387)
Q Consensus 103 ~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~-------------------------------~ 147 (387)
.-+|.|+.++++ ++++||||||+|+||.+||++||+++ +..||+ +
T Consensus 330 ~lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~p 409 (535)
T PLN02867 330 LLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQ 409 (535)
T ss_pred HHHHHHHHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCCC
Confidence 357999999997 88999999999999999999999996 222221 0
Q ss_pred CCCcccceEEEEeCCHHHHHHHHHH----HHhcC--CCCCChHHHHHH---HhcCCCCCcccCCCCCcccccCCCCCCcc
Q 016559 148 HSERLNSGVMVVEPSAAVFNDMMTK----VNTLG--SYTGGDQGFLNS---YYSDFPNAHVFEPNLPLEVVNTRPVPNME 218 (387)
Q Consensus 148 ~~~yfNSGVmvinps~~~~~~ile~----~~~~~--~~~~~DQdiLN~---~f~d~~~~~~f~p~~~~~~~~~~p~~~~~ 218 (387)
+..||||||||||.+++..+++.+. +.... .....|||.||. +|.| ++.
T Consensus 410 ~~cYFNSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~dqd~LN~~LlvF~g----------------------~v~ 467 (535)
T PLN02867 410 ERCAWLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALLAFKG----------------------HVH 467 (535)
T ss_pred CCcceecceeeeeHHHHHHhcHHHHHHHHHHhchhcccccccccccchHHHHhcC----------------------cEE
Confidence 1357899999999998666655443 44332 245679999996 7887 478
Q ss_pred cccccccccccc-cccccccccCCCCcEEEEeeCCCCCCCCcccccCCCchhHHHHH
Q 016559 219 RLSTLYNADVGL-YMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDI 274 (387)
Q Consensus 219 ~Lp~~YN~~~~~-y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~W~~~ 274 (387)
.|+..||.. |+ |..........++++||||+ |+.|||..|..... -+.|..+
T Consensus 468 ~LD~rWNv~-gLgy~~~~~~~~~i~~paIIHYn-G~~KPW~e~~~~~y--R~~W~ky 520 (535)
T PLN02867 468 PIDPSWHVA-GLGSRPPEVPREILESAAVLHFS-GPAKPWLEIGFPEV--RSLWYRH 520 (535)
T ss_pred ECChhhccc-CCCcccccchhhhcCCcEEEEEC-CCCCcccccCCCch--hHHHHHh
Confidence 899999983 32 21111111235789999995 99999998876533 2455433
No 17
>PLN02870 Probable galacturonosyltransferase
Probab=99.77 E-value=2.7e-19 Score=183.89 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=106.9
Q ss_pred hhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhhhccC-------------------------------
Q 016559 103 WGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFCANLK------------------------------- 147 (387)
Q Consensus 103 ~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~~------------------------------- 147 (387)
..+|.||.++++ ++.+||||||+|+||.+||++||++| +.+||+.
T Consensus 328 ~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~ 407 (533)
T PLN02870 328 LLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDP 407 (533)
T ss_pred HHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCc
Confidence 467999999987 78999999999999999999999996 3333321
Q ss_pred CCCcccceEEEEeCCHHHHH----HHHHHHHhc--CCCCCChHHHH---HHHhcCCCCCcccCCCCCcccccCCCCCCcc
Q 016559 148 HSERLNSGVMVVEPSAAVFN----DMMTKVNTL--GSYTGGDQGFL---NSYYSDFPNAHVFEPNLPLEVVNTRPVPNME 218 (387)
Q Consensus 148 ~~~yfNSGVmvinps~~~~~----~ile~~~~~--~~~~~~DQdiL---N~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~ 218 (387)
+..|||||||+||.+++..+ ++.+.+.+. ..+...|||+| |..|.+ ++.
T Consensus 408 ~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g----------------------~v~ 465 (533)
T PLN02870 408 EECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKG----------------------HVH 465 (533)
T ss_pred ccceeeccchhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcC----------------------ceE
Confidence 23467799999999975544 444555443 24567999999 578888 377
Q ss_pred cccccccccccccccccccccCCCCcEEEEeeCCCCCCCCcccccCCCchhHHHHHHHH
Q 016559 219 RLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVK 277 (387)
Q Consensus 219 ~Lp~~YN~~~~~y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~W~~~~~~ 277 (387)
.|+.+||...-.|..... ....++++||||+ |+.|||..|.....+ ..|..+...
T Consensus 466 ~LD~rWN~~gLgy~~~~~-~~~i~~aaIIHY~-G~~KPW~~~~~~~yr--~~W~kYl~~ 520 (533)
T PLN02870 466 PIDPSWHMLGLGYQSKTN-IESVKKAAVIHYN-GQSKPWLEIGFEHLR--PFWTKYVNY 520 (533)
T ss_pred ECChHHhcCCCCCccccc-ccccCCcEEEEEC-CCCCCccccCccchh--HHHHHHHcc
Confidence 889999974322221111 1256789999995 999999988765332 456665444
No 18
>PLN02769 Probable galacturonosyltransferase
Probab=99.77 E-value=1.6e-18 Score=181.32 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=104.5
Q ss_pred hhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhhhcc--------------------CCCCcccceEEE
Q 016559 103 WGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFCANL--------------------KHSERLNSGVMV 158 (387)
Q Consensus 103 ~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~--------------------~~~~yfNSGVmv 158 (387)
..+|.||+++++ ++.+||||||+|+||.+||++||+++ ..+||+ ++..||||||||
T Consensus 437 ~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~rl~~~~~yl~~~~F~~~~CyFNSGVLL 516 (629)
T PLN02769 437 VFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGVRLGQLKNYLGDTNFDTNSCAWMSGLNV 516 (629)
T ss_pred HHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEehhhhhhhhhhhhhhcccCCCccccccccCeeE
Confidence 467999999986 78999999999999999999999986 233332 124578999999
Q ss_pred EeCCHHHHHHH----HHHHH---hc--CCCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCccccccccccccc
Q 016559 159 VEPSAAVFNDM----MTKVN---TL--GSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVG 229 (387)
Q Consensus 159 inps~~~~~~i----le~~~---~~--~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~ 229 (387)
||.++...+++ .+++. .. ..+..++|+++|.+|.+ ++..|+..||...-
T Consensus 517 INL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~lnlvF~g----------------------~v~~LD~rWNv~gL 574 (629)
T PLN02769 517 IDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPASLLTFQD----------------------LIYPLDDRWVLSGL 574 (629)
T ss_pred eeHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCHHHHHhcC----------------------eEEECCHHHccccc
Confidence 99997554433 22222 21 23455788889999998 47889999997521
Q ss_pred ccccccccccCCCCcEEEEeeCCCCCCCCcccccCCCchhHHHHHHHH
Q 016559 230 LYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVK 277 (387)
Q Consensus 230 ~y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~W~~~~~~ 277 (387)
.|...-.+ ...++++||||+ |+.|||..+.... .-+.|+.+...
T Consensus 575 G~~~~i~~-~~i~~paIIHYn-G~~KPW~e~~i~~--yr~~W~kYl~~ 618 (629)
T PLN02769 575 GHDYGIDE-QAIKKAAVLHYN-GNMKPWLELGIPK--YKKYWKRFLNR 618 (629)
T ss_pred cccccccc-cccCCcEEEEEC-CCCCCccCCCCCh--HHHHHHHHhcc
Confidence 11111111 246799999995 9999999875432 23677776543
No 19
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=6.7e-20 Score=176.12 Aligned_cols=205 Identities=28% Similarity=0.403 Sum_probs=140.3
Q ss_pred CCCEEEEEEeeCcchHHH-HHHHHHHHHHhCC-CCcEEE-EEcCCCCHHHHHHHHhcCcEEEEeeeeCC----CC----C
Q 016559 28 STDQAYVTLLYGDEFLLG-VRVLGKSIRDTGS-NKDMVV-LVSDGVSDYSKKLLKADGWIVEKISLLEN----PN----Q 96 (387)
Q Consensus 28 ~~~~Ayvt~~tdd~Yl~~-a~VL~~SL~~~ns-~~dlVv-Lv~d~vs~e~~~~L~~~g~~v~~I~~i~~----p~----~ 96 (387)
.+++|+.+.+++.++.++ ++++.+-|+..+. ++.+|. +.-+++.+-..+.|+.+|..+..|+.++. +. .
T Consensus 68 ng~~al~n~~t~~d~y~N~Tr~lv~~Lk~~~etkaKlV~vL~mkg~d~wk~d~l~ldga~~~~vq~i~~hevv~~~~di~ 147 (368)
T COG5597 68 NGDYALGNRATLRDIYLNRTRALVVVLKTGGETKAKLVEVLTMKGCDLWKTDLLPLDGAFNARVQRINVHEVVPFTKDIK 147 (368)
T ss_pred cCcccccchhhhhceeecccceehhhhhhcCcchhheeeehhhcccchhhhhccccchHHHHHhccchHhhhhhhhhccC
Confidence 567888888887776666 8888888888764 555544 55567777777777766543222222211 11 1
Q ss_pred CCCcchhhhhhhhhccccccccEEEEEcCCeeecCCchHHhcCh--hhhhc-----------------------------
Q 016559 97 VRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCR--KFCAN----------------------------- 145 (387)
Q Consensus 97 ~~~~~~~~sy~KL~~~~L~eydRVLYLDaD~lVl~nLdeLF~l~--~~~Aa----------------------------- 145 (387)
....+|..+|+||.+|+++|||||+|||+|.|+++|||+||++| .+.|+
T Consensus 148 ~~~~rw~~mftKLrVfeqtEyDRvifLDsDaivlknmDklFd~Pvyef~a~pD~~~sp~~fhrp~~~i~~~ft~~faayg 227 (368)
T COG5597 148 PDFHRWLDMFTKLRVFEQTEYDRVIFLDSDAIVLKNMDKLFDYPVYEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYG 227 (368)
T ss_pred cCcCcHHHHhHHHHhhhhhhhceEEEeccchHHhhhhHHHhcchhhhhccCCchhhCHHHhcCCCCccceeecHHHHhhc
Confidence 12456789999999999999999999999999999999999987 22221
Q ss_pred -----c--------------------CCCCcccceEEEEeCCHHHHHHHHHHHHhc--CCCCCChHHHHHHHhcCCCCCc
Q 016559 146 -----L--------------------KHSERLNSGVMVVEPSAAVFNDMMTKVNTL--GSYTGGDQGFLNSYYSDFPNAH 198 (387)
Q Consensus 146 -----~--------------------~~~~yfNSGVmvinps~~~~~~ile~~~~~--~~~~~~DQdiLN~~f~d~~~~~ 198 (387)
+ ..+.+||||+||++|++..+.+++..+... ...+...|.++|..|+...
T Consensus 228 ~~r~~ly~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~riv~~alPklydda~mmeqsllnlaYn~~g--- 304 (368)
T COG5597 228 KMRAALYAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRIVWFALPKLYDDADMMEQSLLNLAYNYEG--- 304 (368)
T ss_pred ccHhhhccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHhhhc---
Confidence 0 124689999999999999999988776321 2223457999999987641
Q ss_pred ccCCCCCcccccCCCCCCcccccccccccccccccccccccCCCCcEEEEeeCCCCCCCCcccc
Q 016559 199 VFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTS 262 (387)
Q Consensus 199 ~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~ 262 (387)
|. .|.++...||. .....+ +..-.+.+|+ |||+....
T Consensus 305 -~F--------------Pwerld~~yNG---~wa~~n----dlPylka~Hg-----K~W~y~g~ 341 (368)
T COG5597 305 -FF--------------PWERLDPRYNG---YWADAN----DLPYLKAWHG-----KPWFYTGE 341 (368)
T ss_pred -cC--------------chhhcCccccc---cccccc----ccchHHHhhc-----CcCCCCcc
Confidence 22 38899999993 211111 1123445665 99997665
No 20
>PLN02829 Probable galacturonosyltransferase
Probab=99.73 E-value=7.3e-18 Score=175.59 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=103.9
Q ss_pred hhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhhhcc--------------------------CCCCcc
Q 016559 103 WGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFCANL--------------------------KHSERL 152 (387)
Q Consensus 103 ~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~--------------------------~~~~yf 152 (387)
..+|.|++++++ ++++||||||+|+||++||++||+++ ..+||+ +..+||
T Consensus 442 ~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyF 521 (639)
T PLN02829 442 ILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGW 521 (639)
T ss_pred HHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCcccce
Confidence 357999999987 78999999999999999999999997 233221 134689
Q ss_pred cceEEEEeCCHHHHHHHH----HHHHhcCCCCCChHHHHHHH---hcCCCCCcccCCCCCcccccCCCCCCccccccccc
Q 016559 153 NSGVMVVEPSAAVFNDMM----TKVNTLGSYTGGDQGFLNSY---YSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYN 225 (387)
Q Consensus 153 NSGVmvinps~~~~~~il----e~~~~~~~~~~~DQdiLN~~---f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN 225 (387)
|+||||||.+.+..+++. .++.....-...|||.||.. |.+ .+..|+..||
T Consensus 522 NSGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~dlgaLPp~Ll~F~g----------------------~i~~LD~rWN 579 (639)
T PLN02829 522 AYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLGTLPPGLITFWK----------------------RTYPLDRSWH 579 (639)
T ss_pred ecceEEEeHHHHHHhChHHHHHHHHHHccCCccccccCCChHHHHhcC----------------------ceEecChhhe
Confidence 999999999976655543 33333322245899999976 466 3677888888
Q ss_pred ccccccccccccccCCCCcEEEEeeCCCCCCCCcccccCCCchhHHHHHHHH
Q 016559 226 ADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVK 277 (387)
Q Consensus 226 ~~~~~y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~W~~~~~~ 277 (387)
...-.|. ........+++.||||+ |+.|||........ -++|..+...
T Consensus 580 v~GLGy~-~~v~~~~i~~aaIIHyn-G~~KPWle~~i~~y--r~lW~kYl~~ 627 (639)
T PLN02829 580 VLGLGYN-PNVNQRDIERAAVIHYN-GNMKPWLEIGIPKY--RNYWSKYVDY 627 (639)
T ss_pred ecCCCCC-cccchhcccCCeEEEEC-CCCCccccCCcccc--hHHHHHHHhc
Confidence 7532221 11112356789999995 99999987654322 2567666443
No 21
>PLN02742 Probable galacturonosyltransferase
Probab=99.72 E-value=4.8e-17 Score=167.69 Aligned_cols=220 Identities=21% Similarity=0.216 Sum_probs=138.4
Q ss_pred CCEEEEEEeeCcchHHHHHHHHHHHHHhCCCC-cEEE-EEcCCCCHHHHHHHHhc----CcE--EEEee---eeCC---C
Q 016559 29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNK-DMVV-LVSDGVSDYSKKLLKAD----GWI--VEKIS---LLEN---P 94 (387)
Q Consensus 29 ~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~-dlVv-Lv~d~vs~e~~~~L~~~----g~~--v~~I~---~i~~---p 94 (387)
+-+=|| +.+|| +.++.|.+.|...+..+. .+|+ ++||...-..++..-.. +.. +..++ .+.. |
T Consensus 226 ~l~Hy~--ifSdN-vlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~p 302 (534)
T PLN02742 226 NLYHFC--VFSDN-ILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVP 302 (534)
T ss_pred CcceEE--EEecc-chhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccch
Confidence 334444 33443 568888899988875433 3444 78887665554433321 222 22222 2211 1
Q ss_pred --------C-----------------CCC-Ccch-hhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhh
Q 016559 95 --------N-----------------QVR-PKRF-WGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFC 143 (387)
Q Consensus 95 --------~-----------------~~~-~~~~-~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~ 143 (387)
+ ..+ ++.+ ...|.|+.++++ ++++||||||+|+||.+||++||+++ ..+
T Consensus 303 vl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~vi 382 (534)
T PLN02742 303 VLKQLQDSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVN 382 (534)
T ss_pred HHHHhhhhhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEE
Confidence 0 001 2222 467999999986 77999999999999999999999996 222
Q ss_pred hcc--------------------------CCCCcccceEEEEeCCHHHHHHHHHHH---Hh-cCCCCCChHHHHHHH---
Q 016559 144 ANL--------------------------KHSERLNSGVMVVEPSAAVFNDMMTKV---NT-LGSYTGGDQGFLNSY--- 190 (387)
Q Consensus 144 Aa~--------------------------~~~~yfNSGVmvinps~~~~~~ile~~---~~-~~~~~~~DQdiLN~~--- 190 (387)
|++ ++..+||+||||||+++...+++.+.+ .+ .......|||.||..
T Consensus 383 aAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~d~gaLpp~LLa 462 (534)
T PLN02742 383 GAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWKLGTLPPGLLT 462 (534)
T ss_pred EEeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHHHhccccccccccccchHHHH
Confidence 221 235789999999999987666554433 22 334466899999964
Q ss_pred hcCCCCCcccCCCCCcccccCCCCCCcccccccccccccccccccccccCCCCcEEEEeeCCCCCCCCcccccCCCchhH
Q 016559 191 YSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDV 270 (387)
Q Consensus 191 f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~ 270 (387)
|.| .+..|+..||...-.|..... ....+++.||||+ |+.|||........ -++
T Consensus 463 F~g----------------------~~~~LD~rWNv~gLG~~~~v~-~~~i~~aaILHyn-G~~KPWl~~~i~~y--r~~ 516 (534)
T PLN02742 463 FYG----------------------LTEPLDRRWHVLGLGYDTNID-PRLIESAAVLHFN-GNMKPWLKLAIERY--KPL 516 (534)
T ss_pred HcC----------------------cceecChhheecccccccccc-hhhccCCeEEEEC-CCCCcccccCCccc--chH
Confidence 777 367788888874211211100 1256799999995 99999987754322 257
Q ss_pred HHHHHHH
Q 016559 271 WQDIRVK 277 (387)
Q Consensus 271 W~~~~~~ 277 (387)
|..+...
T Consensus 517 W~kYl~~ 523 (534)
T PLN02742 517 WERYVNY 523 (534)
T ss_pred HHHHHcc
Confidence 7776544
No 22
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=99.68 E-value=4.9e-17 Score=169.32 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=103.7
Q ss_pred hhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhcCh---hhhhcc--------------------------CCCCcc
Q 016559 103 WGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFKCR---KFCANL--------------------------KHSERL 152 (387)
Q Consensus 103 ~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~l~---~~~Aa~--------------------------~~~~yf 152 (387)
..+|.|+.++++ ++++||||||+|+||.+||++||+++ ..+|++ +..++|
T Consensus 460 ~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyf 539 (657)
T PLN02910 460 MLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGW 539 (657)
T ss_pred HHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhhhhccCCCCcee
Confidence 357899999987 77999999999999999999999986 233321 124567
Q ss_pred cceEEEEeCCHHHHHHHHH---HHHh-cCCCCCChHHHHH---HHhcCCCCCcccCCCCCcccccCCCCCCccccccccc
Q 016559 153 NSGVMVVEPSAAVFNDMMT---KVNT-LGSYTGGDQGFLN---SYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYN 225 (387)
Q Consensus 153 NSGVmvinps~~~~~~ile---~~~~-~~~~~~~DQdiLN---~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN 225 (387)
|+||||||.+++..+++.+ .+.+ .......|||.|| ..|.+ .+..|+..||
T Consensus 540 NsGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~dqgsLPpgLLvF~g----------------------~i~pLD~rWN 597 (657)
T PLN02910 540 AFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWKLGSLPPGLITFYN----------------------LTYPLDRSWH 597 (657)
T ss_pred ecccEEEeHHHHHHhhHHHHHHHHHHhcccccccccCCCChHHHHHhC----------------------ceeecCchhe
Confidence 7799999999876555544 3322 2456678999999 57877 3677888888
Q ss_pred ccccccccccccccCCCCcEEEEeeCCCCCCCCcccccCCCchhHHHHHH
Q 016559 226 ADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIR 275 (387)
Q Consensus 226 ~~~~~y~~~~~w~~~~~~~~IIHft~gp~KPW~~w~~~~~~~~~~W~~~~ 275 (387)
...-.|. ........+++.||||+ |+.|||........ -+.|..+.
T Consensus 598 v~GLGyd-~~v~~~~i~~AAVLHyn-G~~KPWl~l~i~~Y--r~~W~kYl 643 (657)
T PLN02910 598 VLGLGYD-PALNQTEIENAAVVHYN-GNYKPWLDLAIAKY--KPYWSRYV 643 (657)
T ss_pred ecCCCCC-cccccccccCcEEEEeC-CCCCcccccCcccc--hHHHHHHc
Confidence 7532221 11112356789999996 99999987654322 25565553
No 23
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism]
Probab=98.65 E-value=1.2e-08 Score=103.36 Aligned_cols=91 Identities=36% Similarity=0.539 Sum_probs=82.4
Q ss_pred hhhhhhhccccccccEEEEEcCCeeecCCchHHhc-ChhhhhccCCCCcccceEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q 016559 104 GVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFK-CRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGG 182 (387)
Q Consensus 104 ~sy~KL~~~~L~eydRVLYLDaD~lVl~nLdeLF~-l~~~~Aa~~~~~yfNSGVmvinps~~~~~~ile~~~~~~~~~~~ 182 (387)
-.+.|+..|.+..+++.+.+|+|...+.+.+.+|. ++..++....+..||+|.|++.|+...++.+++.......+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~~~~~~~~l~~~~n~~~~v~~ps~~~~~~~~~~~~~~~~~~~~ 230 (369)
T KOG1950|consen 151 LNYAKLYMFQLDFYSKLVKIDADDCILKNDDLLFSNWPDLFATNILPLIFNSGLLVFEPSLCNYKDLMEFSEEFESYNGA 230 (369)
T ss_pred hcccccceeeecccccceEEeccchhcCChhhhhhhchhhccCCCccceeccCccccCCCccchhhHHHhhcccCCCCCc
Confidence 36889999999999999999999999999999999 77877776677789999999999999999988888877888899
Q ss_pred hHHHHHHHhcCC
Q 016559 183 DQGFLNSYYSDF 194 (387)
Q Consensus 183 DQdiLN~~f~d~ 194 (387)
||+++|.+|...
T Consensus 231 ~q~~l~~~f~~~ 242 (369)
T KOG1950|consen 231 DQGFLHLIFSWI 242 (369)
T ss_pred cchhhHHHhhcc
Confidence 999999999984
No 24
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=98.26 E-value=6.4e-06 Score=80.12 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=82.4
Q ss_pred EEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEc--CCCCHHHHHHHHh-cCcEEEEeeeeCCCCCCCCcchh--hhhh
Q 016559 33 YVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVS--DGVSDYSKKLLKA-DGWIVEKISLLENPNQVRPKRFW--GVYT 107 (387)
Q Consensus 33 yvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~--d~vs~e~~~~L~~-~g~~v~~I~~i~~p~~~~~~~~~--~sy~ 107 (387)
+| +..++.++..+..++..||+.|.+.++-|++. ++++++.++.|.. ..+....+..+..++.. ..... +-..
T Consensus 4 IV-i~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~-~~~~~~~~~~~ 81 (271)
T PF11051_consen 4 IV-ITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLPDQDVWFVDASCVIDPDYL-GKSFSKKGFQN 81 (271)
T ss_pred EE-EEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhhhhhhheecceEEeecccc-ccccccCCchh
Confidence 44 44456899999999999999999999977665 7899999988876 22222222222122211 11111 3345
Q ss_pred hhhccccccccEEEEEcCCeeecCCchHHhcChhhhhccCCCCcccceEEEE
Q 016559 108 KLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVV 159 (387)
Q Consensus 108 KL~~~~L~eydRVLYLDaD~lVl~nLdeLF~l~~~~Aa~~~~~yfNSGVmvi 159 (387)
|.++--...++.||+||||++.++|++.||+.+. |-.+|.++.
T Consensus 82 K~lA~l~ssFeevllLDaD~vpl~~p~~lF~~~~---------yk~tG~lfw 124 (271)
T PF11051_consen 82 KWLALLFSSFEEVLLLDADNVPLVDPEKLFESEE---------YKKTGALFW 124 (271)
T ss_pred hhhhhhhCCcceEEEEcCCcccccCHHHHhcCcc---------ccccCEEEE
Confidence 6666667899999999999999999999998654 677888777
No 25
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=97.95 E-value=9.9e-05 Score=68.42 Aligned_cols=165 Identities=13% Similarity=0.163 Sum_probs=94.2
Q ss_pred CCHHHHHHHHhcCcEEEEeeeeCCCCC-----CCCcch-hhhhhhhhccc--cccccEEEEEcCCeeecCCchHHhcChh
Q 016559 70 VSDYSKKLLKADGWIVEKISLLENPNQ-----VRPKRF-WGVYTKLKIFN--MTNYKKVVYLDADTIVIKNIEDLFKCRK 141 (387)
Q Consensus 70 vs~e~~~~L~~~g~~v~~I~~i~~p~~-----~~~~~~-~~sy~KL~~~~--L~eydRVLYLDaD~lVl~nLdeLF~l~~ 141 (387)
+++++.+.+++.|..+..+.....+.. .....| .-++.|..+-. |..--.|+++|+|++.++|+.++|+.+.
T Consensus 11 ~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~~~~ 90 (212)
T PF03407_consen 11 LDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFENPD 90 (212)
T ss_pred ECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhccCC
Confidence 457788888888876544332211111 112222 23455555442 2223359999999999999999993221
Q ss_pred --hhhc--c-------CCCCcccceEEEEeCCHHH---HHHHHHHHHhcCCCCCChHHHHHHHhcCCCCCcccCCCCCcc
Q 016559 142 --FCAN--L-------KHSERLNSGVMVVEPSAAV---FNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLE 207 (387)
Q Consensus 142 --~~Aa--~-------~~~~yfNSGVmvinps~~~---~~~ile~~~~~~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~ 207 (387)
+... . +....+|+|+|.++++... ++++.+.+.+. -...||.++|.++..... ..
T Consensus 91 ~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~--~~~~DQ~~~n~~l~~~~~-----~~---- 159 (212)
T PF03407_consen 91 ADILFSSDGWDGTNSDRNGNLVNTGFYYFRPTPRTIAFLEDWLERMAES--PGCWDQQAFNELLREQAA-----RY---- 159 (212)
T ss_pred CceEEecCCCcccchhhcCCccccceEEEecCHHHHHHHHHHHHHHHhC--CCcchHHHHHHHHHhccc-----CC----
Confidence 1111 1 1234579999999999755 55555554443 123599999999988421 00
Q ss_pred cccCCCCCCccccccccccc-ccccccccccccC--CCCcEEEEee
Q 016559 208 VVNTRPVPNMERLSTLYNAD-VGLYMLANKWMVD--ESELHVIHYT 250 (387)
Q Consensus 208 ~~~~~p~~~~~~Lp~~YN~~-~~~y~~~~~w~~~--~~~~~IIHft 250 (387)
... ++..||...-.+ .+.+.....|... ..++.+||.+
T Consensus 160 ----~~~-~~~~L~~~~f~~g~~~f~~~~~~~~~~~~~~p~~vH~n 200 (212)
T PF03407_consen 160 ----GGL-RVRFLPPSLFPNGHGYFCQSRDWAWVPTKNKPYIVHAN 200 (212)
T ss_pred ----cCc-EEEEeCHHHeeccccceeecchhhhhccccccceEEEc
Confidence 011 467777654332 2222221223222 4689999996
No 26
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=95.87 E-value=0.055 Score=61.75 Aligned_cols=200 Identities=16% Similarity=0.216 Sum_probs=120.9
Q ss_pred CCCCCEEEEEEeeCcchHHHHHHHHHHHHHhCCCCcE-EEEEcCCCCHHHHHHHHh----cCcEEEEeeeeCCCCCCCC-
Q 016559 26 SQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDM-VVLVSDGVSDYSKKLLKA----DGWIVEKISLLENPNQVRP- 99 (387)
Q Consensus 26 ~~~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dl-VvLv~d~vs~e~~~~L~~----~g~~v~~I~~i~~p~~~~~- 99 (387)
.+..-.-.-+++.+.-|-.-+++++.|+.++ |+.++ .-+...-+|+.-++.+-. ++....-|+ .+.|.--++
T Consensus 1177 ~~~~vINIFSvASGHLYERflrIMm~Svlkn-TktpVKFWfLkNyLSPtFKe~iP~mA~eYnFeyElv~-YkWPrWLhqQ 1254 (1470)
T KOG1879|consen 1177 KDKEVINIFSVASGHLYERFLRIMMLSVLKN-TKTPVKFWFLKNYLSPTFKESIPHMAKEYNFEYELVQ-YKWPRWLHQQ 1254 (1470)
T ss_pred CccceEEEEeeccccHHHHHHHHHHHHHHhC-CCCceeEEeehhhcChHHHHHHHHHHHHhCceEEEEE-ecCchhhhhh
Confidence 3444566777888988999999999999985 44454 235666788765544432 444443333 234532111
Q ss_pred ---cchhhhhhhhhcccc--ccccEEEEEcCCeeecCCchHHhcCh---------hhhhc---c---------------C
Q 016559 100 ---KRFWGVYTKLKIFNM--TNYKKVVYLDADTIVIKNIEDLFKCR---------KFCAN---L---------------K 147 (387)
Q Consensus 100 ---~~~~~sy~KL~~~~L--~eydRVLYLDaD~lVl~nLdeLF~l~---------~~~Aa---~---------------~ 147 (387)
.|-+-.|-=|++-=| -+.+||||.|||-||..||+||.+.+ +||-. | .
T Consensus 1255 ~EKQRiiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfdl~GaPygYtPfCdsR~EMDGyRFWK~GYW~~hL~ 1334 (1470)
T KOG1879|consen 1255 TEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFDLGGAPYGYTPFCDSRREMDGYRFWKQGYWKKHLR 1334 (1470)
T ss_pred hhhhhhhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcccCCCccccCccccccccccchhHHhhhHHHHHhc
Confidence 111112222222222 47899999999999999999999885 24532 1 1
Q ss_pred CCCcccceEEEEeCCHHH----HHHH---HHHHH-hcCCCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCccc
Q 016559 148 HSERLNSGVMVVEPSAAV----FNDM---MTKVN-TLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMER 219 (387)
Q Consensus 148 ~~~yfNSGVmvinps~~~----~~~i---le~~~-~~~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~ 219 (387)
...|-=|.+.|+++..-+ -+++ .+.+. ...+...-|||+=|.+...- .+..
T Consensus 1335 grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsNLDQDLPNnm~hqV---------------------pIkS 1393 (1470)
T KOG1879|consen 1335 GRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSNLDQDLPNNMQHQV---------------------PIKS 1393 (1470)
T ss_pred cCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhhccccccccceeec---------------------cccc
Confidence 235666888888877411 1111 12222 23456667999999888762 3677
Q ss_pred cccccccccccccccccccc--CCCCcEEEEeeCCCCCCCC
Q 016559 220 LSTLYNADVGLYMLANKWMV--DESELHVIHYTLGPLKPWD 258 (387)
Q Consensus 220 Lp~~YN~~~~~y~~~~~w~~--~~~~~~IIHft~gp~KPW~ 258 (387)
||..|=+ -+.|-. ..+.+++|-=| .-||.
T Consensus 1394 LPqeWLW-------CETWC~d~skkkAktIDLC---nNP~T 1424 (1470)
T KOG1879|consen 1394 LPQEWLW-------CETWCDDESKKKAKTIDLC---NNPLT 1424 (1470)
T ss_pred CCcchhh-------hhhhcCchhhhhchhhhhh---cCccc
Confidence 8877532 234532 35688888886 35664
No 27
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=93.10 E-value=0.098 Score=53.15 Aligned_cols=182 Identities=16% Similarity=0.160 Sum_probs=96.9
Q ss_pred HHhhhccccCCCCC-CCCCEEEEEEeeCcchHHHHH--HHHHHHHHhCCCCcEEEEEcC-CCCH--HHHHHHHhcCcEEE
Q 016559 13 IALLSIQSRAAIGS-QSTDQAYVTLLYGDEFLLGVR--VLGKSIRDTGSNKDMVVLVSD-GVSD--YSKKLLKADGWIVE 86 (387)
Q Consensus 13 ~~~~~~~~~~~~~~-~~~~~Ayvt~~tdd~Yl~~a~--VL~~SL~~~ns~~dlVvLv~d-~vs~--e~~~~L~~~g~~v~ 86 (387)
++|-+||.+....- +..+.-++..=+++.-..+.+ -.+.|+.+++|+..++++-.. +.++ ...+-+-..|..+.
T Consensus 110 ~~~~sf~~~~~~~~~~~c~~~~fm~w~S~~~~f~~r~~~sIESa~k~hP~~cv~vls~t~ds~~~~s~~kp~~~~~lsv~ 189 (409)
T KOG1928|consen 110 LKSPSFQSRVNSFFRKECSVRFFMTWISPAESFGVREMCSIESAFKTHPEGCVVVLSKTMDSPNGYSILKPFLDSGLSVI 189 (409)
T ss_pred ccCcccCCCcchhhccCCceeEEEEecccccCCChhhhhhhHHHHhhCCCceEEEEEccccCCCCccccccHhHhhhhhc
Confidence 34566777632222 223444443445554444443 378999999999998775532 1111 11222222333332
Q ss_pred EeeeeCCCCC-CC--Ccchh--------hhhhhhhccccccccEE--------EEEcCCeeecCCchHHhcChhhhhccC
Q 016559 87 KISLLENPNQ-VR--PKRFW--------GVYTKLKIFNMTNYKKV--------VYLDADTIVIKNIEDLFKCRKFCANLK 147 (387)
Q Consensus 87 ~I~~i~~p~~-~~--~~~~~--------~sy~KL~~~~L~eydRV--------LYLDaD~lVl~nLdeLF~l~~~~Aa~~ 147 (387)
.+.+ +-|.. +. .+.|. +.-.+.+.-.+.+.-|. ||||+|+||++||..|=+.=...++-.
T Consensus 190 ~v~~-~lp~llk~t~~e~~l~~~k~g~~~~~~~~l~~~lSdl~RLA~LyKYGGvYLDTDvIvLksl~~l~N~ig~~~~~~ 268 (409)
T KOG1928|consen 190 AVTP-DLPFLLKDTPGETWLERWKDGRLDPGKIPLLQNLSDLSRLALLYKYGGVYLDTDVIVLKSLSNLRNVIGVDPATQ 268 (409)
T ss_pred cccc-CchhhHhhCccccHHHHHHhcccCCCcccchhhHHHHHHHHHHHHhCCEEeeccEEEecccccccccccccchhh
Confidence 2211 01111 00 01110 11122222223333332 899999999999998875322222223
Q ss_pred CCCcccceEEEEeCCHHHHHHHHHHHHhc---CCCCCChHHHHHHHhcCCC
Q 016559 148 HSERLNSGVMVVEPSAAVFNDMMTKVNTL---GSYTGGDQGFLNSYYSDFP 195 (387)
Q Consensus 148 ~~~yfNSGVmvinps~~~~~~ile~~~~~---~~~~~~DQdiLN~~f~d~~ 195 (387)
.-.+.|.+||.+++....-.++++....+ ..+..+-.+++..+.+-++
T Consensus 269 ~~~~lnnavl~F~k~Hpfl~~cl~eF~~tfNg~~WG~NGP~LvTRVakr~c 319 (409)
T KOG1928|consen 269 AWTRLNNAVLIFDKNHPFLLECLREFALTYNGNIWGHNGPYLVTRVAKRWC 319 (409)
T ss_pred HHHhhcCceeecCCCCHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHh
Confidence 45689999999999988777777666543 2344456678888887654
No 28
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=91.30 E-value=0.67 Score=47.71 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=48.4
Q ss_pred cccccEEEEEcCCeeecCCchHHhcCh--hhhh-c------------cCCCCcccceEEEEeCCHHHHHHHHH-------
Q 016559 114 MTNYKKVVYLDADTIVIKNIEDLFKCR--KFCA-N------------LKHSERLNSGVMVVEPSAAVFNDMMT------- 171 (387)
Q Consensus 114 L~eydRVLYLDaD~lVl~nLdeLF~l~--~~~A-a------------~~~~~yfNSGVmvinps~~~~~~ile------- 171 (387)
.++.|=|.|||+|++|++. -|.+| .+.. . -+.-.-+|+|+++|+......+-+-+
T Consensus 195 ~PeaEWiWWLDsDALImNm---sfelPlery~~~NlVihg~~~~l~~~kdW~GLNtGsFLIRNcqWSldlLDaWa~mgp~ 271 (429)
T PLN03182 195 HPEVEWIWWMDSDALFTDM---TFEIPLEKYEGYNLVIHGWDELVYDQKSWIGLNTGSFLIRNCQWSLDLLDAWAPMGPK 271 (429)
T ss_pred CCCceEEEEecCCceeecC---CCCCCHhHcCCcCeeeccchhhheeccccCccceeeEEEEcCHHHHHHHHHHHhcCCC
Confidence 3789999999999999863 23344 1110 0 01224699999999999543222211
Q ss_pred -------------HHHhcCCCCCChHHHHHHHhcC
Q 016559 172 -------------KVNTLGSYTGGDQGFLNSYYSD 193 (387)
Q Consensus 172 -------------~~~~~~~~~~~DQdiLN~~f~d 193 (387)
.+.....+...||..|-+++..
T Consensus 272 ~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~ 306 (429)
T PLN03182 272 GPIRDEAGKILTAELKGRPAFEADDQSALVYLLLT 306 (429)
T ss_pred CchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHh
Confidence 1112245677899999998843
No 29
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=84.68 E-value=4.7 Score=37.32 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=54.5
Q ss_pred CCCCCCEEEEEEeeCcchHHHHHHHHHHHHHhC-CCCcE-EEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcch
Q 016559 25 GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTG-SNKDM-VVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRF 102 (387)
Q Consensus 25 ~~~~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~~dl-VvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~ 102 (387)
..+.++.+.+..++|+. ..+.-++.|+.... ++... +++++++-++++.+.+++.... .+.++..+....
T Consensus 25 ~~~~~~isVvip~~n~~--~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~v~~i~~~~~~g---- 96 (251)
T cd06439 25 PAYLPTVTIIIPAYNEE--AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK--GVKLLRFPERRG---- 96 (251)
T ss_pred CCCCCEEEEEEecCCcH--HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC--cEEEEEcCCCCC----
Confidence 33456688888888864 44556678887654 33223 4556666666677777765422 122222221111
Q ss_pred hhhhhhhhccccccccEEEEEcCCeeecCC
Q 016559 103 WGVYTKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 103 ~~sy~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
....+-...+....|=|+++|+|+++..+
T Consensus 97 -~~~a~n~gi~~a~~d~i~~lD~D~~~~~~ 125 (251)
T cd06439 97 -KAAALNRALALATGEIVVFTDANALLDPD 125 (251)
T ss_pred -hHHHHHHHHHHcCCCEEEEEccccCcCHH
Confidence 01112222233445899999999999643
No 30
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=84.59 E-value=6.5 Score=38.52 Aligned_cols=99 Identities=9% Similarity=0.083 Sum_probs=58.9
Q ss_pred CCCEEEEEEeeCcchHHHHHHHHHHHHHhC-CCCcEEE-EEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcch-hh
Q 016559 28 STDQAYVTLLYGDEFLLGVRVLGKSIRDTG-SNKDMVV-LVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRF-WG 104 (387)
Q Consensus 28 ~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~~dlVv-Lv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~-~~ 104 (387)
.-+.|...++++ .|..-..-.+.|--++- +++++.. +.+|.-+.-- .+ +.|. .+.+.++..+ ...+| ..
T Consensus 33 n~tIgl~vfatG-kY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p--~v-~lg~-~r~~~V~~v~---~~~~W~~~ 104 (271)
T cd02515 33 NITIGLTVFAVG-KYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVP--EV-ELGP-GRRLTVLKIA---EESRWQDI 104 (271)
T ss_pred CCEEEEEEEEec-cHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCc--cc-ccCC-CceeEEEEec---cccCCcHH
Confidence 457888888888 58777777778887774 5666543 4555332100 00 0110 0112222211 12345 35
Q ss_pred hhhhhhccc-------cccccEEEEEcCCeeecCCch
Q 016559 105 VYTKLKIFN-------MTNYKKVVYLDADTIVIKNIE 134 (387)
Q Consensus 105 sy~KL~~~~-------L~eydRVLYLDaD~lVl~nLd 134 (387)
+..|+.++. +.++|=+..+|+|+++.+++.
T Consensus 105 sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 105 SMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred HHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCC
Confidence 677777762 358999999999999999875
No 31
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=83.67 E-value=4.5 Score=41.92 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhhhccccC-CCCCCCCCEEEEEEeeCcchHHHHHHHHHHHHHhC-CCCcE-EEEEcCCCCHHHHHHHHh
Q 016559 4 IPKLLTFVLIALLSIQSRA-AIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTG-SNKDM-VVLVSDGVSDYSKKLLKA 80 (387)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~~dl-VvLv~d~vs~e~~~~L~~ 80 (387)
+|-++.++.+.--.-+... ..+.+.++.+.+.-++|++ ....-++.|+.+.. |...+ |++++++-++++.+.+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~vsVIIP~yNe~--~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~ 100 (439)
T TIGR03111 23 IPAVGGFIILLRKYRHKKRLKFIGKLPDITIIIPVYNSE--DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCR 100 (439)
T ss_pred HHHHHHHHHHHHHhccccccCCcCCCCCEEEEEEeCCCh--HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHH
Confidence 4555555553322222222 2224457888888889976 44566778887654 43333 566777777777666553
Q ss_pred ---cCcEEEEeeeeCCCCCCCCcchhhhhhhhhccccccccEEEEEcCCeeecCC
Q 016559 81 ---DGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 81 ---~g~~v~~I~~i~~p~~~~~~~~~~sy~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
....+. +..++ ++.+. ..... .+.+...-|=|+.+|+|.++-.|
T Consensus 101 ~~~~~~~v~-v~~~~-~~~Gk----a~AlN--~gl~~s~g~~v~~~DaD~~~~~d 147 (439)
T TIGR03111 101 AQNEFPGLS-LRYMN-SDQGK----AKALN--AAIYNSIGKYIIHIDSDGKLHKD 147 (439)
T ss_pred HHHhCCCeE-EEEeC-CCCCH----HHHHH--HHHHHccCCEEEEECCCCCcChH
Confidence 222221 11122 21111 11111 11122344569999999998543
No 32
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=83.01 E-value=9 Score=34.06 Aligned_cols=61 Identities=25% Similarity=0.219 Sum_probs=47.9
Q ss_pred CCCCEEEEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhc--CcEEEEee
Q 016559 27 QSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKAD--GWIVEKIS 89 (387)
Q Consensus 27 ~~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~~~--g~~v~~I~ 89 (387)
..+...+||.+++ +++..+.-++.|+++..|+..+ ++++=|++++..+.|++. +.+++..+
T Consensus 58 n~~~vvfVSa~S~-~h~~~~~~~i~si~~~~P~~k~-ilY~LgL~~~~i~~L~~~~~n~evr~Fn 120 (142)
T PF07801_consen 58 NSSDVVFVSATSD-NHFNESMKSISSIRKFYPNHKI-ILYDLGLSEEQIKKLKKNFCNVEVRKFN 120 (142)
T ss_pred cCCccEEEEEecc-hHHHHHHHHHHHHHHHCCCCcE-EEEeCCCCHHHHHHHHhcCCceEEEECC
Confidence 4567788876655 6778888999999999999884 678889999999999874 34455443
No 33
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=81.82 E-value=0.89 Score=43.56 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=19.0
Q ss_pred hhhhhhhhccc--c---ccccEEEEEcCCeeecCCchHH---hcCh----h-------------hhh---c---------
Q 016559 103 WGVYTKLKIFN--M---TNYKKVVYLDADTIVIKNIEDL---FKCR----K-------------FCA---N--------- 145 (387)
Q Consensus 103 ~~sy~KL~~~~--L---~eydRVLYLDaD~lVl~nLdeL---F~l~----~-------------~~A---a--------- 145 (387)
..+|.|+.+-+ + +++|=|+|||+|++|.+.=-+| +.-+ . ... .
T Consensus 58 ~~~W~K~~~lr~~m~~~P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li 137 (239)
T PF05637_consen 58 PGSWAKIPALRAAMKKYPEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLI 137 (239)
T ss_dssp HHHHTHHHHHHHHHHH-TT-SEEEEE-TTEEE------------------------------------------------
T ss_pred ChhhHHHHHHHHHHHhCCCCCEEEEEcCCeEEEecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34677765543 2 6789999999999998753332 2201 0 000 0
Q ss_pred -cCCCCcccceEEEEeCCHHHHHHHHHHHHhc----CCC---CCChHHHHHHHhcCC
Q 016559 146 -LKHSERLNSGVMVVEPSAAVFNDMMTKVNTL----GSY---TGGDQGFLNSYYSDF 194 (387)
Q Consensus 146 -~~~~~yfNSGVmvinps~~~~~~ile~~~~~----~~~---~~~DQdiLN~~f~d~ 194 (387)
-.+...+|+|+++++.+.... .+++.+... ... ...||+.|-.+++..
T Consensus 138 ~t~d~~gLNtGsFliRns~ws~-~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~~ 193 (239)
T PF05637_consen 138 ITQDWNGLNTGSFLIRNSPWSR-DFLDAWADPLYRNYDWDQLEFDEQSALEHLLQWH 193 (239)
T ss_dssp ---------------------------------------------------------
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 023467999999999997554 344443321 122 367999999998763
No 34
>PRK11204 N-glycosyltransferase; Provisional
Probab=81.19 E-value=8.1 Score=39.26 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=52.1
Q ss_pred CCCEEEEEEeeCcchHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCC-CCCCCCcchhhh
Q 016559 28 STDQAYVTLLYGDEFLLGVRVLGKSIRDTG-SNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLEN-PNQVRPKRFWGV 105 (387)
Q Consensus 28 ~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~-p~~~~~~~~~~s 105 (387)
.++.+.+.-++|++ ....-++.|+.+.+ ++.+ +++++|+-++++.+.+++...+...+.++.. ++... .+.
T Consensus 53 ~p~vsViIp~yne~--~~i~~~l~sl~~q~yp~~e-iiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gk----a~a 125 (420)
T PRK11204 53 YPGVSILVPCYNEG--ENVEETISHLLALRYPNYE-VIAINDGSSDNTGEILDRLAAQIPRLRVIHLAENQGK----ANA 125 (420)
T ss_pred CCCEEEEEecCCCH--HHHHHHHHHHHhCCCCCeE-EEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCH----HHH
Confidence 35688888888874 33455677777543 5445 4556666666666666543211111222321 11111 111
Q ss_pred hhhhhccccccccEEEEEcCCeeecCC
Q 016559 106 YTKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 106 y~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
.. ...+..++|-++.+|+|+++-.+
T Consensus 126 ln--~g~~~a~~d~i~~lDaD~~~~~d 150 (420)
T PRK11204 126 LN--TGAAAARSEYLVCIDGDALLDPD 150 (420)
T ss_pred HH--HHHHHcCCCEEEEECCCCCCChh
Confidence 11 11223678999999999988654
No 35
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=79.28 E-value=8.7 Score=35.02 Aligned_cols=93 Identities=14% Similarity=0.201 Sum_probs=49.6
Q ss_pred EEEEEEeeCcchHHHHHHHHHHHHHhCCC-CcE-EEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhhhhh
Q 016559 31 QAYVTLLYGDEFLLGVRVLGKSIRDTGSN-KDM-VVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTK 108 (387)
Q Consensus 31 ~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~-~dl-VvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~sy~K 108 (387)
.+.+..++|+. ..+.-++.|+...... .+. ++++.++-+++..+.+++.......+.++..++.... -..
T Consensus 2 ~sIiip~~n~~--~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~~~~~------~a~ 73 (249)
T cd02525 2 VSIIIPVRNEE--KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPKRIQS------AGL 73 (249)
T ss_pred EEEEEEcCCch--hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCCCCch------HHH
Confidence 45555666643 3345567888765432 232 4556666666666666665422222333433321111 111
Q ss_pred hhccccccccEEEEEcCCeeecC
Q 016559 109 LKIFNMTNYKKVVYLDADTIVIK 131 (387)
Q Consensus 109 L~~~~L~eydRVLYLDaD~lVl~ 131 (387)
-...+..++|-|+++|+|.++..
T Consensus 74 N~g~~~a~~d~v~~lD~D~~~~~ 96 (249)
T cd02525 74 NIGIRNSRGDIIIRVDAHAVYPK 96 (249)
T ss_pred HHHHHHhCCCEEEEECCCccCCH
Confidence 22223347899999999998743
No 36
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=78.77 E-value=8.8 Score=38.95 Aligned_cols=101 Identities=13% Similarity=0.126 Sum_probs=52.3
Q ss_pred CCCCEEEEEEeeCcchHHHHHHHHHHHHHhC-C-CCcEEEEEcCCCCHHHHHHHHhcCcEE---EEeeeeCCCCCCCCcc
Q 016559 27 QSTDQAYVTLLYGDEFLLGVRVLGKSIRDTG-S-NKDMVVLVSDGVSDYSKKLLKADGWIV---EKISLLENPNQVRPKR 101 (387)
Q Consensus 27 ~~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s-~~dlVvLv~d~vs~e~~~~L~~~g~~v---~~I~~i~~p~~~~~~~ 101 (387)
..++.+.+.-+.|++ ....-++.||.... + +.+ +++++|+-++++.+.+++..... ..+.++..+. .+..
T Consensus 38 ~~p~VSVIIpa~Ne~--~~L~~~L~sL~~q~yp~~~e-IIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~--~~~g 112 (384)
T TIGR03469 38 AWPAVVAVVPARNEA--DVIGECVTSLLEQDYPGKLH-VILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQP--LPPG 112 (384)
T ss_pred CCCCEEEEEecCCcH--hHHHHHHHHHHhCCCCCceE-EEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCC--CCCC
Confidence 356788888888874 44566778887653 3 233 55676666666666666532110 1233333211 1111
Q ss_pred hhh-hhhhhhcccc-----ccccEEEEEcCCeeecCC
Q 016559 102 FWG-VYTKLKIFNM-----TNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 102 ~~~-sy~KL~~~~L-----~eydRVLYLDaD~lVl~n 132 (387)
|.+ .+.--...+. .+.|-++++|+|+.+-.+
T Consensus 113 ~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~ 149 (384)
T TIGR03469 113 WSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPD 149 (384)
T ss_pred CcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChh
Confidence 110 1111111111 238999999999987443
No 37
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=77.66 E-value=20 Score=30.10 Aligned_cols=82 Identities=18% Similarity=0.073 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhhhhhhhccccccccEEEE
Q 016559 43 LLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVY 122 (387)
Q Consensus 43 l~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~sy~KL~~~~L~eydRVLY 122 (387)
...+.-++.||.+......-++++.++-.++..+.+++.... +.++..+..... .-.+-.+.+..+++-+++
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~---~~~~~~~~~~g~-----~~a~n~~~~~~~~~~i~~ 80 (166)
T cd04186 9 LEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPE---VRLIRNGENLGF-----GAGNNQGIREAKGDYVLL 80 (166)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCC---eEEEecCCCcCh-----HHHhhHHHhhCCCCEEEE
Confidence 344566788888765422235566666666677777765432 222222211111 112223333447899999
Q ss_pred EcCCeeecCC
Q 016559 123 LDADTIVIKN 132 (387)
Q Consensus 123 LDaD~lVl~n 132 (387)
+|+|..+..+
T Consensus 81 ~D~D~~~~~~ 90 (166)
T cd04186 81 LNPDTVVEPG 90 (166)
T ss_pred ECCCcEECcc
Confidence 9999998655
No 38
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=75.05 E-value=9 Score=31.94 Aligned_cols=94 Identities=21% Similarity=0.404 Sum_probs=50.4
Q ss_pred EEEeeCc-chHHHHHHHHHHHHHhCCCCcE-EEEEcCCCCHHHHHHHHhc---CcEEEEeeeeCCCCCCCCcchhhhhhh
Q 016559 34 VTLLYGD-EFLLGVRVLGKSIRDTGSNKDM-VVLVSDGVSDYSKKLLKAD---GWIVEKISLLENPNQVRPKRFWGVYTK 108 (387)
Q Consensus 34 vt~~tdd-~Yl~~a~VL~~SL~~~ns~~dl-VvLv~d~vs~e~~~~L~~~---g~~v~~I~~i~~p~~~~~~~~~~sy~K 108 (387)
|+-++|. ++ +.-++.||++. +..+. ++++.++-++++.+.+++. +..++-+. .+.. ... .-.+
T Consensus 3 vip~~n~~~~---l~~~l~sl~~q-~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~---~~~n---~g~--~~~~ 70 (169)
T PF00535_consen 3 VIPTYNEAEY---LERTLESLLKQ-TDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIR---NPEN---LGF--SAAR 70 (169)
T ss_dssp EEEESS-TTT---HHHHHHHHHHH-SGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEE---HCCC---SHH--HHHH
T ss_pred EEEeeCCHHH---HHHHHHHHhhc-cCCCEEEEEecccccccccccccccccccccccccc---cccc---ccc--cccc
Confidence 4455565 55 44567777777 33333 4556666567777777764 23333222 2211 011 2223
Q ss_pred hhccccccccEEEEEcCCeeecCC-chHHhcC
Q 016559 109 LKIFNMTNYKKVVYLDADTIVIKN-IEDLFKC 139 (387)
Q Consensus 109 L~~~~L~eydRVLYLDaD~lVl~n-LdeLF~l 139 (387)
-.+.+...-+-|+++|+|.++..+ ++++.+.
T Consensus 71 n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~ 102 (169)
T PF00535_consen 71 NRGIKHAKGEYILFLDDDDIISPDWLEELVEA 102 (169)
T ss_dssp HHHHHH--SSEEEEEETTEEE-TTHHHHHHHH
T ss_pred cccccccceeEEEEeCCCceEcHHHHHHHHHH
Confidence 334444556699999999999988 6666654
No 39
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=71.47 E-value=32 Score=31.05 Aligned_cols=95 Identities=20% Similarity=0.130 Sum_probs=51.6
Q ss_pred CEEEEEEeeCcchHHHHHHHHHHHHHhC-CC--CcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhhh
Q 016559 30 DQAYVTLLYGDEFLLGVRVLGKSIRDTG-SN--KDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVY 106 (387)
Q Consensus 30 ~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~--~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~sy 106 (387)
+...+.-++|++ .....-++.||.... ++ .. +++++++-++++.+.+++.+... .+..+..+...... .+.
T Consensus 2 ~vsviip~~n~~-~~~l~~~l~sl~~q~~~~~~~e-iivvdd~s~d~t~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~- 75 (234)
T cd06421 2 TVDVFIPTYNEP-LEIVRKTLRAALAIDYPHDKLR-VYVLDDGRRPELRALAAELGVEY-GYRYLTRPDNRHAK--AGN- 75 (234)
T ss_pred ceEEEEecCCCc-HHHHHHHHHHHHhcCCCcccEE-EEEEcCCCchhHHHHHHHhhccc-CceEEEeCCCCCCc--HHH-
Confidence 456676777753 122455778887643 33 23 55677776777777777765321 11222222111111 011
Q ss_pred hhhhccccccccEEEEEcCCeeecC
Q 016559 107 TKLKIFNMTNYKKVVYLDADTIVIK 131 (387)
Q Consensus 107 ~KL~~~~L~eydRVLYLDaD~lVl~ 131 (387)
.-.+.+...+|-|+++|+|.++-.
T Consensus 76 -~n~~~~~a~~d~i~~lD~D~~~~~ 99 (234)
T cd06421 76 -LNNALAHTTGDFVAILDADHVPTP 99 (234)
T ss_pred -HHHHHHhCCCCEEEEEccccCcCc
Confidence 112233458899999999998854
No 40
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=68.11 E-value=19 Score=29.02 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhCC-CCcEEEEEcCCCCHHHHHHHHhcCc---EEEEeeeeCCCCCCCCcchhhhhhhhhcccccccc
Q 016559 43 LLGVRVLGKSIRDTGS-NKDMVVLVSDGVSDYSKKLLKADGW---IVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYK 118 (387)
Q Consensus 43 l~~a~VL~~SL~~~ns-~~dlVvLv~d~vs~e~~~~L~~~g~---~v~~I~~i~~p~~~~~~~~~~sy~KL~~~~L~eyd 118 (387)
......++.|+.+.+. ... +++++++-+++..+.+++... ....+.. .... .. ...+-.+.+..+.|
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-g~-----~~~~~~~~~~~~~d 79 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFE-VIVVDDGSTDGTLEILEEYAKKDPRVIRVIN--EENQ-GL-----AAARNAGLKAARGE 79 (156)
T ss_pred HHHHHHHHHHHHhCCccceE-EEEEeCCCCccHHHHHHHHHhcCCCeEEEEe--cCCC-Ch-----HHHHHHHHHHhcCC
Confidence 3455677888888764 334 455666656666666655432 1222111 1110 00 11122222223789
Q ss_pred EEEEEcCCeeecCCc
Q 016559 119 KVVYLDADTIVIKNI 133 (387)
Q Consensus 119 RVLYLDaD~lVl~nL 133 (387)
.++++|+|.++..+.
T Consensus 80 ~v~~~d~D~~~~~~~ 94 (156)
T cd00761 80 YILFLDADDLLLPDW 94 (156)
T ss_pred EEEEECCCCccCccH
Confidence 999999999987663
No 41
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=67.85 E-value=15 Score=38.12 Aligned_cols=94 Identities=21% Similarity=0.181 Sum_probs=50.7
Q ss_pred CCCEEEEEEeeCcchHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHhc---CcEEEEeeeeCCCCCCCCcchh
Q 016559 28 STDQAYVTLLYGDEFLLGVRVLGKSIRDTG-SNKDMVVLVSDGVSDYSKKLLKAD---GWIVEKISLLENPNQVRPKRFW 103 (387)
Q Consensus 28 ~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~~dlVvLv~d~vs~e~~~~L~~~---g~~v~~I~~i~~p~~~~~~~~~ 103 (387)
.++.+.+.-++|++ ..+.-++.|+.+.. ++.+ +++++|+-++++.+.+++. ...++-+.. . .+. .+ .
T Consensus 74 ~p~vsViIP~yNE~--~~i~~~l~sll~q~yp~~e-IivVdDgs~D~t~~~~~~~~~~~~~v~vv~~-~-~n~--Gk--a 144 (444)
T PRK14583 74 HPLVSILVPCFNEG--LNARETIHAALAQTYTNIE-VIAINDGSSDDTAQVLDALLAEDPRLRVIHL-A-HNQ--GK--A 144 (444)
T ss_pred CCcEEEEEEeCCCH--HHHHHHHHHHHcCCCCCeE-EEEEECCCCccHHHHHHHHHHhCCCEEEEEe-C-CCC--CH--H
Confidence 45688888888875 23445667776543 5555 4556666566555555542 222222211 1 111 11 0
Q ss_pred hhhhhhhccccccccEEEEEcCCeeecCC
Q 016559 104 GVYTKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 104 ~sy~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
.... ......++|-++.+|+|+++-.|
T Consensus 145 ~AlN--~gl~~a~~d~iv~lDAD~~~~~d 171 (444)
T PRK14583 145 IALR--MGAAAARSEYLVCIDGDALLDKN 171 (444)
T ss_pred HHHH--HHHHhCCCCEEEEECCCCCcCHH
Confidence 1111 11123578999999999998554
No 42
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=67.29 E-value=37 Score=34.21 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=49.7
Q ss_pred CCCCEEEEEEeeCcchHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHh---cCcEEEEeeeeCCCC--CCCCc
Q 016559 27 QSTDQAYVTLLYGDEFLLGVRVLGKSIRDTG-SNKDMVVLVSDGVSDYSKKLLKA---DGWIVEKISLLENPN--QVRPK 100 (387)
Q Consensus 27 ~~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~~dlVvLv~d~vs~e~~~~L~~---~g~~v~~I~~i~~p~--~~~~~ 100 (387)
+.++...+.=++|++- ...-.+.|+.... |++++++ +.++-++.+.+.+++ ..... .|.++..+. ....+
T Consensus 39 ~~p~VSViiP~~nee~--~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~~~~p~~-~i~~v~~~~~~G~~~K 114 (373)
T TIGR03472 39 AWPPVSVLKPLHGDEP--ELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLRADFPDA-DIDLVIDARRHGPNRK 114 (373)
T ss_pred CCCCeEEEEECCCCCh--hHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHHHhCCCC-ceEEEECCCCCCCChH
Confidence 3456777766777642 3445667887664 6666554 444444444444443 21111 122222221 11111
Q ss_pred chhhhhhhhhccccccccEEEEEcCCeeecCC
Q 016559 101 RFWGVYTKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 101 ~~~~sy~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
. ... ..+.+..++|-++++|+|+++-.+
T Consensus 115 ~--~~l--~~~~~~a~ge~i~~~DaD~~~~p~ 142 (373)
T TIGR03472 115 V--SNL--INMLPHARHDILVIADSDISVGPD 142 (373)
T ss_pred H--HHH--HHHHHhccCCEEEEECCCCCcChh
Confidence 1 111 112344689999999999988543
No 43
>PLN03181 glycosyltransferase; Provisional
Probab=66.20 E-value=15 Score=38.18 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=51.5
Q ss_pred hhhhhhhccc-----cccccEEEEEcCCeeecCCchHHhcCh--hh-----hh-c----c---CCCCcccceEEEEeCCH
Q 016559 104 GVYTKLKIFN-----MTNYKKVVYLDADTIVIKNIEDLFKCR--KF-----CA-N----L---KHSERLNSGVMVVEPSA 163 (387)
Q Consensus 104 ~sy~KL~~~~-----L~eydRVLYLDaD~lVl~nLdeLF~l~--~~-----~A-a----~---~~~~yfNSGVmvinps~ 163 (387)
..|.|+-+-+ .++.+-|-|||+|++|.+. -+.+| .+ .. . + +.-.-+|+|+++|+.+.
T Consensus 181 ~~WaKipalRaAM~a~PeAEWfWWLDsDALIMNp---~~sLPl~ry~~~NLvvhg~p~~vy~~qdw~GlN~GsFLIRNcq 257 (453)
T PLN03181 181 SYWAKLPVVRAAMLAHPEAEWIWWVDSDAVFTDM---DFKLPLHRYRDHNLVVHGWPKLIYEKRSWTALNAGVFLIRNCQ 257 (453)
T ss_pred hhhhHHHHHHHHHHHCCCceEEEEecCCceeecC---CCCCCHhhcCCccccccCCcccccccccccccceeeeEEecCH
Confidence 3455554433 4789999999999999965 12222 11 00 0 0 12256999999999885
Q ss_pred HHHHHH-------------------HHH-HHhcCCCCCChHHHHHHHhcC
Q 016559 164 AVFNDM-------------------MTK-VNTLGSYTGGDQGFLNSYYSD 193 (387)
Q Consensus 164 ~~~~~i-------------------le~-~~~~~~~~~~DQdiLN~~f~d 193 (387)
...+-+ +.. +......+..||..|-+++--
T Consensus 258 WSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLvyll~~ 307 (453)
T PLN03181 258 WSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALVYLLYK 307 (453)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHHHHHHh
Confidence 322211 111 111234566899999887643
No 44
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=64.38 E-value=35 Score=30.25 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCC-CCCcchhhhhhhhhccccccccEEEEE
Q 016559 46 VRVLGKSIRDTG-SNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQ-VRPKRFWGVYTKLKIFNMTNYKKVVYL 123 (387)
Q Consensus 46 a~VL~~SL~~~n-s~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~-~~~~~~~~sy~KL~~~~L~eydRVLYL 123 (387)
..-++.||.... +..+ +++++++-++++.+.+++.+.... +..+..+.. +....+...+... . ..++|=++++
T Consensus 12 l~~~l~sl~~q~~~~~e-iiivD~~s~d~t~~~~~~~~~~~~-i~~~~~~~n~g~~~~~n~~~~~a-~--~~~~d~v~~l 86 (202)
T cd04185 12 LKECLDALLAQTRPPDH-IIVIDNASTDGTAEWLTSLGDLDN-IVYLRLPENLGGAGGFYEGVRRA-Y--ELGYDWIWLM 86 (202)
T ss_pred HHHHHHHHHhccCCCce-EEEEECCCCcchHHHHHHhcCCCc-eEEEECccccchhhHHHHHHHHH-h--ccCCCEEEEe
Confidence 455677887653 3334 566777666677777777553321 333322211 1111111111111 1 3578999999
Q ss_pred cCCeeecCC
Q 016559 124 DADTIVIKN 132 (387)
Q Consensus 124 DaD~lVl~n 132 (387)
|+|.++..+
T Consensus 87 d~D~~~~~~ 95 (202)
T cd04185 87 DDDAIPDPD 95 (202)
T ss_pred CCCCCcChH
Confidence 999998654
No 45
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=63.88 E-value=3.7 Score=33.73 Aligned_cols=86 Identities=10% Similarity=0.149 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCC----CHHHHHHHHhcCcEEEEeeeeCCCCCCCCcch--hhhhhhhhc-cccccccE
Q 016559 47 RVLGKSIRDTGSNKDMVVLVSDGV----SDYSKKLLKADGWIVEKISLLENPNQVRPKRF--WGVYTKLKI-FNMTNYKK 119 (387)
Q Consensus 47 ~VL~~SL~~~ns~~dlVvLv~d~v----s~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~--~~sy~KL~~-~~L~eydR 119 (387)
.-.+.|.+++||++.++++..+.. ...+.+.+.+....+.....-..+ ...... .+-+.|+.+ +..-.
T Consensus 5 ~~~i~s~~~~nP~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~sD~~R~~~L~~~GG--- 79 (103)
T PF04488_consen 5 QCSIESWARHNPDYEYILWTDESDNVRVKRIDIEFLFEKTPWFLELYNKWEP--GRYPNYAHKSDLLRYLVLYKYGG--- 79 (103)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCcchhhhHHHHHHHHhCChHHHHHHhhhhc--ccccchHHHHHHHHHHHHHHcCc---
Confidence 346789999999988766554322 122233333321100000000000 000000 122344333 33333
Q ss_pred EEEEcCCeeecCCc-hHHhc
Q 016559 120 VVYLDADTIVIKNI-EDLFK 138 (387)
Q Consensus 120 VLYLDaD~lVl~nL-deLF~ 138 (387)
+|+|.|+++++++ +++..
T Consensus 80 -iY~D~D~~~~rpl~~~~~~ 98 (103)
T PF04488_consen 80 -IYLDLDVICLRPLDDPWLP 98 (103)
T ss_pred -EEEeCccccCcchhhhhhc
Confidence 8999999999999 87754
No 46
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=62.80 E-value=38 Score=27.95 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCC-CCcEEEEEcCCCCHHHHHHHHhcCcEE-EEeeeeC-CCCCCCCcchhhhhhhhhccccccccEE
Q 016559 44 LGVRVLGKSIRDTGS-NKDMVVLVSDGVSDYSKKLLKADGWIV-EKISLLE-NPNQVRPKRFWGVYTKLKIFNMTNYKKV 120 (387)
Q Consensus 44 ~~a~VL~~SL~~~ns-~~dlVvLv~d~vs~e~~~~L~~~g~~v-~~I~~i~-~p~~~~~~~~~~sy~KL~~~~L~eydRV 120 (387)
....-++.||++... ..+ ++++.++-++++.+.+++..... ..+..+. ..+.... .. +-.+.+....|-|
T Consensus 10 ~~l~~~l~sl~~q~~~~~~-iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~--~n~~~~~~~~~~i 82 (180)
T cd06423 10 AVIERTIESLLALDYPKLE-VIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKA----GA--LNAGLRHAKGDIV 82 (180)
T ss_pred HHHHHHHHHHHhCCCCceE-EEEEeCCCccchHHHHHHHhccccceEEEEEecccCCch----HH--HHHHHHhcCCCEE
Confidence 455667788887653 344 45566666666666666543210 0111111 1111111 11 1112223478899
Q ss_pred EEEcCCeeecCC
Q 016559 121 VYLDADTIVIKN 132 (387)
Q Consensus 121 LYLDaD~lVl~n 132 (387)
+.+|+|.++-.+
T Consensus 83 ~~~D~D~~~~~~ 94 (180)
T cd06423 83 VVLDADTILEPD 94 (180)
T ss_pred EEECCCCCcChH
Confidence 999999988654
No 47
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=62.20 E-value=55 Score=36.36 Aligned_cols=101 Identities=21% Similarity=0.252 Sum_probs=55.2
Q ss_pred CCCCCEEEEEEeeCcch--H-HHHHHHHHHHHHhCC--CCcEEEEEcCCCCHHHH-------HHHHh-cC--cEEEEeee
Q 016559 26 SQSTDQAYVTLLYGDEF--L-LGVRVLGKSIRDTGS--NKDMVVLVSDGVSDYSK-------KLLKA-DG--WIVEKISL 90 (387)
Q Consensus 26 ~~~~~~Ayvt~~tdd~Y--l-~~a~VL~~SL~~~ns--~~dlVvLv~d~vs~e~~-------~~L~~-~g--~~v~~I~~ 90 (387)
++.++.+.+.=++|++- + ..+.....|+.+.+. +.++ ++++|+-+++.. +.|.+ .+ .++.-...
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R 199 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRR 199 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 45677888888888753 2 466777889987764 3454 556666544421 23333 22 23322222
Q ss_pred eCCCCCCCCcchhhhhhhhhccccccccEEEEEcCCeeecCC
Q 016559 91 LENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 91 i~~p~~~~~~~~~~sy~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
..+.+ +...-.+.+.+. +. .+||-|+.||||+++-+|
T Consensus 200 ~~n~~--~KaGNl~~~~~~--~~-~~~eyivvLDADs~m~~d 236 (691)
T PRK05454 200 RRNVG--RKAGNIADFCRR--WG-GAYDYMVVLDADSLMSGD 236 (691)
T ss_pred CcCCC--ccHHHHHHHHHh--cC-CCcCEEEEEcCCCCCCHH
Confidence 22221 111111222221 11 689999999999999876
No 48
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=60.84 E-value=51 Score=30.47 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=50.7
Q ss_pred CEEEEEEeeCcchHHHHHHHHHHHHHhC-CCCcE-EEEEcCCCCHHHHHHHHhcCcE-EEEeeeeCCCCCCCCcchhhhh
Q 016559 30 DQAYVTLLYGDEFLLGVRVLGKSIRDTG-SNKDM-VVLVSDGVSDYSKKLLKADGWI-VEKISLLENPNQVRPKRFWGVY 106 (387)
Q Consensus 30 ~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~~dl-VvLv~d~vs~e~~~~L~~~g~~-v~~I~~i~~p~~~~~~~~~~sy 106 (387)
..+.+.-++|+. ....-++.||.... +...+ ++++.++-++++.+.+++.+.. ...+..+.+... .. .....
T Consensus 2 ~vsIiIp~~Ne~--~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~-~G--~~~a~ 76 (241)
T cd06427 2 VYTILVPLYKEA--EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQP-RT--KPKAC 76 (241)
T ss_pred eEEEEEecCCcH--HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCC-Cc--hHHHH
Confidence 455666667764 34556778887643 32223 3445566667777787775321 112222221110 00 01111
Q ss_pred hhhhccccccccEEEEEcCCeeecCC
Q 016559 107 TKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 107 ~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
. ...+....|=|+++|+|+++-.+
T Consensus 77 n--~g~~~a~gd~i~~~DaD~~~~~~ 100 (241)
T cd06427 77 N--YALAFARGEYVVIYDAEDAPDPD 100 (241)
T ss_pred H--HHHHhcCCCEEEEEcCCCCCChH
Confidence 1 22334567899999999997544
No 49
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=58.61 E-value=6.5 Score=38.04 Aligned_cols=47 Identities=28% Similarity=0.492 Sum_probs=35.8
Q ss_pred ccEEEEEcCCeeecCCchHHhcChhhhhcc---CCCCcccceEEEEeCCH
Q 016559 117 YKKVVYLDADTIVIKNIEDLFKCRKFCANL---KHSERLNSGVMVVEPSA 163 (387)
Q Consensus 117 ydRVLYLDaD~lVl~nLdeLF~l~~~~Aa~---~~~~yfNSGVmvinps~ 163 (387)
-+-+||||+||++.+.+--|+.-+.++.-+ .+..-+-.|.+++|.+.
T Consensus 211 ~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r~~~~~slENg~I~VnRsn 260 (326)
T PRK15382 211 CEGCIYLDADMIITDKLGVLYAPDGIAVHVDCNDDSKSLENGAIVVNRSN 260 (326)
T ss_pred CCceEEeecceeeecccccEEcCCceEEEEEecCCccccccceEEEccCC
Confidence 467999999999999999888766554433 34555777888888884
No 50
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=58.61 E-value=38 Score=30.29 Aligned_cols=83 Identities=22% Similarity=0.156 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCC--cEEEEEcCCCCHHHHHHHH-h---cCcEEEEeeeeCCCCCCCCcchhhhhhhhhccccccc
Q 016559 44 LGVRVLGKSIRDTGSNK--DMVVLVSDGVSDYSKKLLK-A---DGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNY 117 (387)
Q Consensus 44 ~~a~VL~~SL~~~ns~~--dlVvLv~d~vs~e~~~~L~-~---~g~~v~~I~~i~~p~~~~~~~~~~sy~KL~~~~L~ey 117 (387)
....-++.||....-.. --++++.++-++.+.+.++ . .+..+.. +..+... .. -.....-........
T Consensus 10 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~---~~~~~~~-~~--g~~~a~n~g~~~~~~ 83 (229)
T cd04192 10 ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKI---LNNSRVS-IS--GKKNALTTAIKAAKG 83 (229)
T ss_pred HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEE---eeccCcc-cc--hhHHHHHHHHHHhcC
Confidence 33556777887654322 1245566655555555554 2 1223322 2222100 00 011111222334568
Q ss_pred cEEEEEcCCeeecCC
Q 016559 118 KKVVYLDADTIVIKN 132 (387)
Q Consensus 118 dRVLYLDaD~lVl~n 132 (387)
|-|+++|+|.++-.+
T Consensus 84 d~i~~~D~D~~~~~~ 98 (229)
T cd04192 84 DWIVTTDADCVVPSN 98 (229)
T ss_pred CEEEEECCCcccCHH
Confidence 999999999988543
No 51
>PRK15384 type III secretion system protein; Provisional
Probab=58.56 E-value=6.1 Score=38.22 Aligned_cols=47 Identities=17% Similarity=0.438 Sum_probs=35.5
Q ss_pred ccEEEEEcCCeeecCCchHHhcChhhhhcc---CCCCcccceEEEEeCCH
Q 016559 117 YKKVVYLDADTIVIKNIEDLFKCRKFCANL---KHSERLNSGVMVVEPSA 163 (387)
Q Consensus 117 ydRVLYLDaD~lVl~nLdeLF~l~~~~Aa~---~~~~yfNSGVmvinps~ 163 (387)
-.-+||||+||++.+.+--|+.-+.++.-+ .+..-+-.|.+++|.+.
T Consensus 216 ~~GCIYLDaDMilT~KLG~ly~PDGIavhV~r~~~~~slENg~I~VnRsn 265 (336)
T PRK15384 216 NSGCIYLDADMIITEKLGGIYIPDGIAVHVERIDGRASMENGIIAVDRNN 265 (336)
T ss_pred CCceEEeeccceeecccccEEcCCceEEEEEecCCceecccceEEEccCC
Confidence 457899999999999999888766554433 34455677888888884
No 52
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=58.16 E-value=87 Score=35.74 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=51.9
Q ss_pred CCCEEEEEEeeCcchHHHHHHHHHHHH-HhCCCCcE-EEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhh
Q 016559 28 STDQAYVTLLYGDEFLLGVRVLGKSIR-DTGSNKDM-VVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGV 105 (387)
Q Consensus 28 ~~~~Ayvt~~tdd~Yl~~a~VL~~SL~-~~ns~~dl-VvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~s 105 (387)
.++.+.+.-++|++--. ..-.+.|+. ...|+.++ |++++|+-+++..+..++.++++.. .++....+ .+.
T Consensus 259 ~P~VsViIPtYNE~~~v-v~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~~v~yI~-----R~~n~~gK--AGn 330 (852)
T PRK11498 259 WPTVDIFVPTYNEDLNV-VKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEVGVKYIA-----RPTHEHAK--AGN 330 (852)
T ss_pred CCcEEEEEecCCCcHHH-HHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHCCcEEEE-----eCCCCcch--HHH
Confidence 35788887778875211 111233333 33454334 5677777777777777777655422 22111110 011
Q ss_pred hhhhhccccccccEEEEEcCCeeecCC
Q 016559 106 YTKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 106 y~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
.. .+.+..+.|=|+.+|||.++..|
T Consensus 331 LN--~aL~~a~GEyIavlDAD~ip~pd 355 (852)
T PRK11498 331 IN--NALKYAKGEFVAIFDCDHVPTRS 355 (852)
T ss_pred HH--HHHHhCCCCEEEEECCCCCCChH
Confidence 00 01123578999999999998665
No 53
>PRK15383 type III secretion system protein; Provisional
Probab=57.84 E-value=6.7 Score=37.97 Aligned_cols=47 Identities=21% Similarity=0.402 Sum_probs=35.5
Q ss_pred ccEEEEEcCCeeecCCchHHhcChhhhhcc---CCCCcccceEEEEeCCH
Q 016559 117 YKKVVYLDADTIVIKNIEDLFKCRKFCANL---KHSERLNSGVMVVEPSA 163 (387)
Q Consensus 117 ydRVLYLDaD~lVl~nLdeLF~l~~~~Aa~---~~~~yfNSGVmvinps~ 163 (387)
-.-+||||+||++.+.+--|+.-+.++.-+ .+..-+-.|.+++|.+.
T Consensus 219 ~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r~~~~~slENg~I~VnRsn 268 (335)
T PRK15383 219 GGGCIYLDADMLLTDKLGTLYLPDGIAIHVSRKDNHVSLENGIIAVNRSE 268 (335)
T ss_pred CCceEEeecceeeecccccEEcCCceEEEEEecCCceecccceEEEccCC
Confidence 457999999999999999888766554433 34455677888888884
No 54
>PRK10063 putative glycosyl transferase; Provisional
Probab=54.83 E-value=68 Score=30.41 Aligned_cols=94 Identities=15% Similarity=0.273 Sum_probs=51.1
Q ss_pred CEEEEEEeeCc-chHHHHHHHHHHHHHh--CCCCcE-EEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhh
Q 016559 30 DQAYVTLLYGD-EFLLGVRVLGKSIRDT--GSNKDM-VVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGV 105 (387)
Q Consensus 30 ~~Ayvt~~tdd-~Yl~~a~VL~~SL~~~--ns~~dl-VvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~s 105 (387)
+.+.|+.++|. ++ +.-++.||... .+..++ +++++++-++.+.+.+++..... .+.++..++. ...++
T Consensus 2 ~vSVIi~~yN~~~~---l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~-~i~~i~~~~~----G~~~A 73 (248)
T PRK10063 2 LLSVITVAFRNLEG---IVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIF-NLRFVSEPDN----GIYDA 73 (248)
T ss_pred eEEEEEEeCCCHHH---HHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccC-CEEEEECCCC----CHHHH
Confidence 45677777775 34 44455666542 222344 55677766777778887753211 1333333321 11112
Q ss_pred hhhhhccccccccEEEEEcCCeeecCCc
Q 016559 106 YTKLKIFNMTNYKKVVYLDADTIVIKNI 133 (387)
Q Consensus 106 y~KL~~~~L~eydRVLYLDaD~lVl~nL 133 (387)
..+ .......|=|++||+|.+...+.
T Consensus 74 ~N~--Gi~~a~g~~v~~ld~DD~~~~~~ 99 (248)
T PRK10063 74 MNK--GIAMAQGRFALFLNSGDIFHQDA 99 (248)
T ss_pred HHH--HHHHcCCCEEEEEeCCcccCcCH
Confidence 221 12234568999999998887653
No 55
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=52.71 E-value=51 Score=31.76 Aligned_cols=89 Identities=27% Similarity=0.313 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCCCcEEE-EEcCCCCHHHHHHHHh----cCcEEEEeeeeCCCCCCCCcchhhhhhhhhcccccccc
Q 016559 44 LGVRVLGKSIRDTGSNKDMVV-LVSDGVSDYSKKLLKA----DGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYK 118 (387)
Q Consensus 44 ~~a~VL~~SL~~~ns~~dlVv-Lv~d~vs~e~~~~L~~----~g~~v~~I~~i~~p~~~~~~~~~~sy~KL~~~~L~eyd 118 (387)
......+.|+....+..++.+ ++.++-+++..+.|++ .+.. ..|. ...+ ...|.-+-.+=...+..+-|
T Consensus 17 ~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~-~~i~-~~~~----~~~f~~a~arN~g~~~A~~d 90 (281)
T PF10111_consen 17 ERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFI-RYIR-HEDN----GEPFSRAKARNIGAKYARGD 90 (281)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCce-EEEE-cCCC----CCCcCHHHHHHHHHHHcCCC
Confidence 445556888888766667644 4555554443344443 2333 1111 1111 11111122222233335778
Q ss_pred EEEEEcCCeeecCC-chHHhc
Q 016559 119 KVVYLDADTIVIKN-IEDLFK 138 (387)
Q Consensus 119 RVLYLDaD~lVl~n-LdeLF~ 138 (387)
-|+++|+|+++-.+ ++.+..
T Consensus 91 ~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 91 YLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred EEEEEcCCeeeCHHHHHHHHH
Confidence 99999999999654 344444
No 56
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=52.66 E-value=57 Score=28.13 Aligned_cols=89 Identities=15% Similarity=0.263 Sum_probs=45.5
Q ss_pred EEEeeCcchHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHhcC----cEEEEeeeeCCCCCCCCcchhhhhhh
Q 016559 34 VTLLYGDEFLLGVRVLGKSIRDTG-SNKDMVVLVSDGVSDYSKKLLKADG----WIVEKISLLENPNQVRPKRFWGVYTK 108 (387)
Q Consensus 34 vt~~tdd~Yl~~a~VL~~SL~~~n-s~~dlVvLv~d~vs~e~~~~L~~~g----~~v~~I~~i~~p~~~~~~~~~~sy~K 108 (387)
|+.++|.. ....-++.||.... ++.. ++++.++-++.+.+.+++.. ..+..+ ...+. .+.....+
T Consensus 2 vip~~n~~--~~l~~~l~sl~~q~~~~~e-iivvdd~s~d~t~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~ 71 (182)
T cd06420 2 IITTYNRP--EALELVLKSVLNQSILPFE-VIIADDGSTEETKELIEEFKSQFPIPIKHV--WQEDE-----GFRKAKIR 71 (182)
T ss_pred EEeecCCh--HHHHHHHHHHHhccCCCCE-EEEEeCCCchhHHHHHHHHHhhcCCceEEE--EcCCc-----chhHHHHH
Confidence 34455532 23455677777654 3344 44566655555666665432 222221 21111 11111122
Q ss_pred hhccccccccEEEEEcCCeeecCC
Q 016559 109 LKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 109 L~~~~L~eydRVLYLDaD~lVl~n 132 (387)
=...+....|-|++||+|.++-.+
T Consensus 72 n~g~~~a~g~~i~~lD~D~~~~~~ 95 (182)
T cd06420 72 NKAIAAAKGDYLIFIDGDCIPHPD 95 (182)
T ss_pred HHHHHHhcCCEEEEEcCCcccCHH
Confidence 233345678999999999988554
No 57
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=51.40 E-value=63 Score=28.40 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=47.1
Q ss_pred CEEEEEEeeCcchHHHHHHHHHHHHHhCC-CCcEEEEEcCCCCHHH-HHHHHhc---CcEEEEeeeeCCCCCCCCcchhh
Q 016559 30 DQAYVTLLYGDEFLLGVRVLGKSIRDTGS-NKDMVVLVSDGVSDYS-KKLLKAD---GWIVEKISLLENPNQVRPKRFWG 104 (387)
Q Consensus 30 ~~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns-~~dlVvLv~d~vs~e~-~~~L~~~---g~~v~~I~~i~~p~~~~~~~~~~ 104 (387)
+...+..++|+. +..+..++.||..... ..+ ++++.++-+++. ...++.. ...+. ++..+. ...+.
T Consensus 2 ~vsiii~~~n~~-~~~l~~~l~sl~~q~~~~~e-iivvd~gs~d~~~~~~~~~~~~~~~~~~---~~~~~~---~~g~~- 72 (202)
T cd04184 2 LISIVMPVYNTP-EKYLREAIESVRAQTYPNWE-LCIADDASTDPEVKRVLKKYAAQDPRIK---VVFREE---NGGIS- 72 (202)
T ss_pred eEEEEEecccCc-HHHHHHHHHHHHhCcCCCeE-EEEEeCCCCChHHHHHHHHHHhcCCCEE---EEEccc---CCCHH-
Confidence 456676677765 5667778888887543 333 455655544432 2333321 11221 121111 11111
Q ss_pred hhhhhhccccccccEEEEEcCCeeecCC
Q 016559 105 VYTKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 105 sy~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
..+-..++....|=++.+|+|..+-.+
T Consensus 73 -~a~n~g~~~a~~d~i~~ld~D~~~~~~ 99 (202)
T cd04184 73 -AATNSALELATGEFVALLDHDDELAPH 99 (202)
T ss_pred -HHHHHHHHhhcCCEEEEECCCCcCChH
Confidence 112222333456899999999987543
No 58
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=49.15 E-value=58 Score=28.71 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=48.5
Q ss_pred EEEeeCcchHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHhcCcEE-EEeeeeCCCCCCCCcchhhhhhhhhc
Q 016559 34 VTLLYGDEFLLGVRVLGKSIRDTG-SNKDMVVLVSDGVSDYSKKLLKADGWIV-EKISLLENPNQVRPKRFWGVYTKLKI 111 (387)
Q Consensus 34 vt~~tdd~Yl~~a~VL~~SL~~~n-s~~dlVvLv~d~vs~e~~~~L~~~g~~v-~~I~~i~~p~~~~~~~~~~sy~KL~~ 111 (387)
+.-++|.. ..+.-++.||.+.. ++.. ++++.++-++++.+.+++..... ..+..+..... . .....+.+ .
T Consensus 3 vIp~yn~~--~~l~~~l~sl~~q~~~~~e-iiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~--~-G~~~~~n~--g 74 (214)
T cd04196 3 LMATYNGE--KYLREQLDSILAQTYKNDE-LIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKN--L-GVARNFES--L 74 (214)
T ss_pred EEEecCcH--HHHHHHHHHHHhCcCCCeE-EEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCC--c-cHHHHHHH--H
Confidence 44455653 23445677777653 3333 45566655555666666543221 11222222111 0 01112222 1
Q ss_pred cccccccEEEEEcCCeeecCC-chHHhc
Q 016559 112 FNMTNYKKVVYLDADTIVIKN-IEDLFK 138 (387)
Q Consensus 112 ~~L~eydRVLYLDaD~lVl~n-LdeLF~ 138 (387)
....+.|=|++||+|.+...+ +..+.+
T Consensus 75 ~~~~~g~~v~~ld~Dd~~~~~~l~~~~~ 102 (214)
T cd04196 75 LQAADGDYVFFCDQDDIWLPDKLERLLK 102 (214)
T ss_pred HHhCCCCEEEEECCCcccChhHHHHHHH
Confidence 344678899999999877655 455544
No 59
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=48.26 E-value=92 Score=26.82 Aligned_cols=93 Identities=12% Similarity=0.189 Sum_probs=48.8
Q ss_pred EEEeeCcchHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhhhhhhhcc
Q 016559 34 VTLLYGDEFLLGVRVLGKSIRDTG-SNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIF 112 (387)
Q Consensus 34 vt~~tdd~Yl~~a~VL~~SL~~~n-s~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~sy~KL~~~ 112 (387)
|..++|.. ..+.-++.||.... ++.+ |++++++-+++..+.+++....+..+ ...++.. .. ..+-.+.
T Consensus 3 vi~~~n~~--~~l~~~l~sl~~q~~~~~e-vivvDd~s~d~~~~~~~~~~~~~~~~--~~~~~~g----~~--~a~n~~~ 71 (202)
T cd06433 3 ITPTYNQA--ETLEETIDSVLSQTYPNIE-YIVIDGGSTDGTVDIIKKYEDKITYW--ISEPDKG----IY--DAMNKGI 71 (202)
T ss_pred EEeccchH--HHHHHHHHHHHhCCCCCce-EEEEeCCCCccHHHHHHHhHhhcEEE--EecCCcC----HH--HHHHHHH
Confidence 33444542 34556677887653 3333 45666665666677777654332111 1111111 11 1112223
Q ss_pred ccccccEEEEEcCCeeecCC-chHHh
Q 016559 113 NMTNYKKVVYLDADTIVIKN-IEDLF 137 (387)
Q Consensus 113 ~L~eydRVLYLDaD~lVl~n-LdeLF 137 (387)
+....|=|++||+|..+..+ +.++.
T Consensus 72 ~~a~~~~v~~ld~D~~~~~~~~~~~~ 97 (202)
T cd06433 72 ALATGDIIGFLNSDDTLLPGALLAVV 97 (202)
T ss_pred HHcCCCEEEEeCCCcccCchHHHHHH
Confidence 34567889999999998765 44443
No 60
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=48.04 E-value=1.1e+02 Score=27.57 Aligned_cols=96 Identities=19% Similarity=0.212 Sum_probs=50.6
Q ss_pred EEEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhhhhhhhc
Q 016559 32 AYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKI 111 (387)
Q Consensus 32 Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~sy~KL~~ 111 (387)
+.|..++|.. .....-++.|+.... ..+ ++++.++-+++..+.|.+.... ..+.++..++.+ . ..... ..
T Consensus 3 sVvIp~~ne~-~~~l~~~l~sl~~q~-~~e-iivvdd~s~d~~~~~l~~~~~~-~~~~v~~~~~~g--~--~~a~n--~g 72 (235)
T cd06434 3 TVIIPVYDED-PDVFRECLRSILRQK-PLE-IIVVTDGDDEPYLSILSQTVKY-GGIFVITVPHPG--K--RRALA--EG 72 (235)
T ss_pred EEEEeecCCC-hHHHHHHHHHHHhCC-CCE-EEEEeCCCChHHHHHHHhhccC-CcEEEEecCCCC--h--HHHHH--HH
Confidence 4555666643 244555677887765 445 4556666666666665332111 011112222111 1 11111 12
Q ss_pred cccccccEEEEEcCCeeecCC-chHHh
Q 016559 112 FNMTNYKKVVYLDADTIVIKN-IEDLF 137 (387)
Q Consensus 112 ~~L~eydRVLYLDaD~lVl~n-LdeLF 137 (387)
.+....|-|++||+|+.+-.+ +..+.
T Consensus 73 ~~~a~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 73 IRHVTTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred HHHhCCCEEEEECCCceeChhHHHHHH
Confidence 233588999999999999876 33333
No 61
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=47.64 E-value=86 Score=27.54 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCC-CCcEEEEEcCCC-CHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhhhhhhhccccccccEEEE
Q 016559 45 GVRVLGKSIRDTGS-NKDMVVLVSDGV-SDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVY 122 (387)
Q Consensus 45 ~a~VL~~SL~~~ns-~~dlVvLv~d~v-s~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~sy~KL~~~~L~eydRVLY 122 (387)
.+.-++.|+..... ... ++++.++- ++.+.+.+++..-.. ++.++..+.... . ...+=.+....+.|=|++
T Consensus 14 ~l~~~l~Sl~~q~~~~~e-iiivdd~ss~d~t~~~~~~~~~~~-~i~~i~~~~n~G---~--~~a~N~g~~~a~gd~i~~ 86 (201)
T cd04195 14 FLREALESILKQTLPPDE-VVLVKDGPVTQSLNEVLEEFKRKL-PLKVVPLEKNRG---L--GKALNEGLKHCTYDWVAR 86 (201)
T ss_pred HHHHHHHHHHhcCCCCcE-EEEEECCCCchhHHHHHHHHHhcC-CeEEEEcCcccc---H--HHHHHHHHHhcCCCEEEE
Confidence 35567788877543 333 45565554 444555555431111 122232221111 1 112223334457788999
Q ss_pred EcCCeeecCC
Q 016559 123 LDADTIVIKN 132 (387)
Q Consensus 123 LDaD~lVl~n 132 (387)
+|+|.+...+
T Consensus 87 lD~Dd~~~~~ 96 (201)
T cd04195 87 MDTDDISLPD 96 (201)
T ss_pred eCCccccCcH
Confidence 9999887644
No 62
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=46.19 E-value=55 Score=29.15 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=47.8
Q ss_pred CEEEEEEeeCcchHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHhcCcEE--EEeeeeCCCCCCCCcchhhhh
Q 016559 30 DQAYVTLLYGDEFLLGVRVLGKSIRDTG-SNKDMVVLVSDGVSDYSKKLLKADGWIV--EKISLLENPNQVRPKRFWGVY 106 (387)
Q Consensus 30 ~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~~dlVvLv~d~vs~e~~~~L~~~g~~v--~~I~~i~~p~~~~~~~~~~sy 106 (387)
+...+.-++|+.- ...-++.||.... ++.++ +++.++-++++.+.+++..... ..+.++..+...... ....
T Consensus 2 ~vsviip~~n~~~--~l~~~L~sl~~q~~~~~ei-ivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~ 76 (196)
T cd02520 2 GVSILKPLCGVDP--NLYENLESFFQQDYPKYEI-LFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGIN--PKVN 76 (196)
T ss_pred CeEEEEecCCCCc--cHHHHHHHHHhccCCCeEE-EEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCC--HhHH
Confidence 3556666677542 3456688887643 45554 4455555565666555431110 011112111110000 0011
Q ss_pred hhhhccccccccEEEEEcCCeeecC
Q 016559 107 TKLKIFNMTNYKKVVYLDADTIVIK 131 (387)
Q Consensus 107 ~KL~~~~L~eydRVLYLDaD~lVl~ 131 (387)
..-...+..++|=++++|+|+++-.
T Consensus 77 ~~n~g~~~a~~d~i~~~D~D~~~~~ 101 (196)
T cd02520 77 NLIKGYEEARYDILVISDSDISVPP 101 (196)
T ss_pred HHHHHHHhCCCCEEEEECCCceECh
Confidence 1112334467899999999998743
No 63
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=46.03 E-value=1.1e+02 Score=27.77 Aligned_cols=93 Identities=10% Similarity=0.129 Sum_probs=46.6
Q ss_pred CEEEEEEeeCcchHHHHHHHHHHHHHhC-CCCcE-EEEEcCCCCHHHHHHHHhc-------CcEEEEeeeeCCCCCCCCc
Q 016559 30 DQAYVTLLYGDEFLLGVRVLGKSIRDTG-SNKDM-VVLVSDGVSDYSKKLLKAD-------GWIVEKISLLENPNQVRPK 100 (387)
Q Consensus 30 ~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~~dl-VvLv~d~vs~e~~~~L~~~-------g~~v~~I~~i~~p~~~~~~ 100 (387)
+...|.-++|+. ..+.-++.||.+.. +...+ +++++ +-++++.+.+++. +.+++.+. .... .
T Consensus 2 ~vSViIp~yNe~--~~l~~~L~sl~~q~~~~~~~eIiVvD-~s~D~t~~~~~~~~~~~~~~~~~i~~~~---~~~~--~- 72 (232)
T cd06437 2 MVTVQLPVFNEK--YVVERLIEAACALDYPKDRLEIQVLD-DSTDETVRLAREIVEEYAAQGVNIKHVR---RADR--T- 72 (232)
T ss_pred ceEEEEecCCcH--HHHHHHHHHHHhcCCCccceEEEEEE-CCCCcHHHHHHHHHHHHhhcCCceEEEE---CCCC--C-
Confidence 355666667753 33556778887643 33233 33444 4444445555432 33343332 1110 0
Q ss_pred chhhhhhhhhccccccccEEEEEcCCeeecCC
Q 016559 101 RFWGVYTKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 101 ~~~~sy~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
.+ .....=...+..++|=|+.+|+|+++-.+
T Consensus 73 G~-k~~a~n~g~~~a~~~~i~~~DaD~~~~~~ 103 (232)
T cd06437 73 GY-KAGALAEGMKVAKGEYVAIFDADFVPPPD 103 (232)
T ss_pred CC-chHHHHHHHHhCCCCEEEEEcCCCCCChH
Confidence 11 01111122344689999999999998544
No 64
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=45.45 E-value=2.1e+02 Score=29.05 Aligned_cols=173 Identities=12% Similarity=0.149 Sum_probs=87.8
Q ss_pred CCCEEEEEEeeCcchHHHHHHHHHHHHHh-CCCCcEEE-EEcCCCCHHHHHHHH-hcCcEEEEeeeeCCCCCCCCcchh-
Q 016559 28 STDQAYVTLLYGDEFLLGVRVLGKSIRDT-GSNKDMVV-LVSDGVSDYSKKLLK-ADGWIVEKISLLENPNQVRPKRFW- 103 (387)
Q Consensus 28 ~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~-ns~~dlVv-Lv~d~vs~e~~~~L~-~~g~~v~~I~~i~~p~~~~~~~~~- 103 (387)
.-+.+.++++++ .|.....-.+.|--++ -+++++.. +.+|+.+. .-.++ ..+.+++ ++..+ ...+|.
T Consensus 98 n~tIGL~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~--vP~i~l~~~r~~~---V~~v~---~~~~Wqd 168 (337)
T PF03414_consen 98 NITIGLTVFATG-KYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSK--VPRIELGPGRRLK---VFEVQ---EEKRWQD 168 (337)
T ss_dssp T-EEEEEEEE-C-CHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGG--S------TTEEEE---EEE-S---GGSSHHH
T ss_pred CceEEEEEEecc-cHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhh--CCccccCCCceeE---EEEec---ccCCCcc
Confidence 456788888887 5888778888888877 36676644 55654321 00011 1122222 22211 234563
Q ss_pred hhhhhhhccc-------cccccEEEEEcCCeeecCCch-HHhc----C--hhh---------------hhc-c--C-CCC
Q 016559 104 GVYTKLKIFN-------MTNYKKVVYLDADTIVIKNIE-DLFK----C--RKF---------------CAN-L--K-HSE 150 (387)
Q Consensus 104 ~sy~KL~~~~-------L~eydRVLYLDaD~lVl~nLd-eLF~----l--~~~---------------~Aa-~--~-~~~ 150 (387)
.+..|+.++. +.|+|=+..+|+|+++.+++. |.+. . +.+ ++| + + ..-
T Consensus 169 ~sm~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F~~~vGvE~Lg~lva~LHp~~y~~~~~~FpYERrp~S~AyIp~~eGDf 248 (337)
T PF03414_consen 169 ISMMRMEMISEHIEQHIQHEVDYLFCMDVDMVFQDHVGVEILGDLVATLHPWFYFKPRESFPYERRPKSQAYIPYGEGDF 248 (337)
T ss_dssp HHHHHHHHHHHHHHHCHHHH-SEEEEEESSEEE-S-B-GGG-SSEEEEESTTTTTSTGGGS--B-STTSTTB--TT--S-
T ss_pred chhHHHHHHHHHHHHHHhhcCCEEEEEecceEEecccCHHHHHHHHHHhCHHHHCCChhhCccccCccccccccCCCCCe
Confidence 3666666664 257999999999999998875 2221 1 100 111 2 1 234
Q ss_pred cccceEEEEeCCH------HHHHHHHHHHHhcCCCCCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCcccccccc
Q 016559 151 RLNSGVMVVEPSA------AVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLY 224 (387)
Q Consensus 151 yfNSGVmvinps~------~~~~~ile~~~~~~~~~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~Y 224 (387)
|+-+|+.-=.+.+ .-.+.|++-..+.-.-.++|..=||.||-... ....||..|
T Consensus 249 YY~ga~fGGt~~~vl~Lt~~c~~~i~~D~~n~I~A~WhDESHLNKYfl~~K--------------------PtKvLSPEY 308 (337)
T PF03414_consen 249 YYHGAFFGGTVEEVLRLTEACHQGIMQDKANGIEALWHDESHLNKYFLYHK--------------------PTKVLSPEY 308 (337)
T ss_dssp -EECCEEEECHHHHHHHHHHHHHHHHHHHHTT---TTCHHHHHHHHHHHS----------------------SEEE-GGG
T ss_pred EEeceecCCcHHHHHHHHHHHHHHHHhhhhcCceEeccchhhhHHHHhhCC--------------------CceecCHHH
Confidence 6666665434442 22222333323332346899999999986532 256789999
Q ss_pred ccccc
Q 016559 225 NADVG 229 (387)
Q Consensus 225 N~~~~ 229 (387)
+++.+
T Consensus 309 ~Wd~~ 313 (337)
T PF03414_consen 309 CWDER 313 (337)
T ss_dssp SBSHH
T ss_pred ccCcc
Confidence 98754
No 65
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=44.27 E-value=1.1e+02 Score=26.82 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=45.5
Q ss_pred EeeCcchHHHHHHHHHHHHHhCC---CCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcch-h-hhhhhhh
Q 016559 36 LLYGDEFLLGVRVLGKSIRDTGS---NKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRF-W-GVYTKLK 110 (387)
Q Consensus 36 ~~tdd~Yl~~a~VL~~SL~~~ns---~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~-~-~sy~KL~ 110 (387)
-++|+. ..+.-++.|+.+... ++. ++++.++-++++.+.+++.+..+... ..+. ...... . ..+....
T Consensus 4 p~~ne~--~~i~~~l~sl~~~~~p~~~~e-iivvdd~s~D~t~~~~~~~~~~~~~~---~~~~-~~gk~~aln~g~~~a~ 76 (183)
T cd06438 4 PAHNEE--AVIGNTVRSLKAQDYPRELYR-IFVVADNCTDDTAQVARAAGATVLER---HDPE-RRGKGYALDFGFRHLL 76 (183)
T ss_pred eccchH--HHHHHHHHHHHhcCCCCcccE-EEEEeCCCCchHHHHHHHcCCeEEEe---CCCC-CCCHHHHHHHHHHHHH
Confidence 345544 344556678876542 233 45566666777788887776553221 1111 111111 0 0111110
Q ss_pred ccccccccEEEEEcCCeeecC
Q 016559 111 IFNMTNYKKVVYLDADTIVIK 131 (387)
Q Consensus 111 ~~~L~eydRVLYLDaD~lVl~ 131 (387)
. .-..+|-|+++|+|+++-.
T Consensus 77 ~-~~~~~d~v~~~DaD~~~~p 96 (183)
T cd06438 77 N-LADDPDAVVVFDADNLVDP 96 (183)
T ss_pred h-cCCCCCEEEEEcCCCCCCh
Confidence 0 0146899999999999853
No 66
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=43.25 E-value=1.2e+02 Score=24.95 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=51.0
Q ss_pred CCEEEEEEeeCcchHHHHHHHHHHHHHhCCC-CcEEEEEcCCCCHHHHHHHHhcCcEEEEe-eeeCCCCCCCCcchhhhh
Q 016559 29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSN-KDMVVLVSDGVSDYSKKLLKADGWIVEKI-SLLENPNQVRPKRFWGVY 106 (387)
Q Consensus 29 ~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~-~dlVvLv~d~vs~e~~~~L~~~g~~v~~I-~~i~~p~~~~~~~~~~sy 106 (387)
.+...+.-++|.. .....++.|+.+.... .. +++++++-++++.+.+++.......+ ......+.+ ...
T Consensus 3 ~~~siiip~~n~~--~~l~~~l~s~~~q~~~~~e-iivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~~g------~~~ 73 (291)
T COG0463 3 PKVSVVIPTYNEE--EYLPEALESLLNQTYKDFE-IIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERNGG------LGA 73 (291)
T ss_pred ccEEEEEeccchh--hhHHHHHHHHHhhhhcceE-EEEEeCCCCCChHHHHHHHhhhcceEEEeecccCCC------hHH
Confidence 3455555556654 5667778888876543 34 67787777777667776654332111 111111111 112
Q ss_pred hhhhccccccccEEEEEcCCeeecCC
Q 016559 107 TKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 107 ~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
.+-.......-+-|+.+|+|.+ ..+
T Consensus 74 ~~~~~~~~~~~~~~~~~d~d~~-~~~ 98 (291)
T COG0463 74 ARNAGLEYARGDYIVFLDADDQ-HPP 98 (291)
T ss_pred HHHhhHHhccCCEEEEEccCCC-CCH
Confidence 2222222222289999999999 655
No 67
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=43.20 E-value=1.2e+02 Score=29.70 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=76.4
Q ss_pred hccccCCCCCCCCCEEEEEEeeCcchHHH-HHHHHHHHHHhCCCCcEEEEEcCCCCH------HHHHHHHhcCcEEEEee
Q 016559 17 SIQSRAAIGSQSTDQAYVTLLYGDEFLLG-VRVLGKSIRDTGSNKDMVVLVSDGVSD------YSKKLLKADGWIVEKIS 89 (387)
Q Consensus 17 ~~~~~~~~~~~~~~~Ayvt~~tdd~Yl~~-a~VL~~SL~~~ns~~dlVvLv~d~vs~------e~~~~L~~~g~~v~~I~ 89 (387)
.++.........++.-|+.-.-+.+=+|. +...+.|+++++++++++++-.+++.+ .-.++++. |
T Consensus 33 ~~~~~~~~~~~~~k~IW~~W~QG~e~aP~~Vk~ci~s~~k~~~~~~Vi~lt~~Ni~~Yv~~P~~i~~k~~~-g------- 104 (276)
T PF05704_consen 33 KYQYKKKKPETNEKIIWVCWWQGEENAPEIVKKCINSWRKNAPDYEVILLTEDNIKDYVDIPDFILEKYEK-G------- 104 (276)
T ss_pred HhhhcccCcCCCCCcEEEEECCCccccCHHHHHHHHHHHHHCCCCeEEEEChHHHHHHcCCchhHHHHHHc-C-------
Confidence 34444555555666778777766544444 577999999999999976654332221 00011100 0
Q ss_pred eeCCCCCCCCcchhhhhhhhhccccccccEEEEEcCCeeecCCchHHhc-Chhhhhc-c---C---CCCcccceEEEEeC
Q 016559 90 LLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFK-CRKFCAN-L---K---HSERLNSGVMVVEP 161 (387)
Q Consensus 90 ~i~~p~~~~~~~~~~sy~KL~~~~L~eydRVLYLDaD~lVl~nLdeLF~-l~~~~Aa-~---~---~~~yfNSGVmvinp 161 (387)
.-+....+-+.|+.+- .+|- =+|+||++++.+++++.+. .+-++-. . . ......+++|.-.+
T Consensus 105 -------~i~~a~~SDilR~~LL--~~yG-GvWiDatv~~t~~l~~~~~~~~ff~~~~~~~~~~~~~~~~w~~~fi~a~~ 174 (276)
T PF05704_consen 105 -------KISPAHFSDILRLALL--YKYG-GVWIDATVYLTKPLDDEIFDSDFFSFSRPDKDYNPISISSWTNFFIAAKK 174 (276)
T ss_pred -------CCchhHHHHHHHHHHH--HHcC-cEEeCCceEECCchhHHHhcCCeeEEeccCcCcccchHHHhHhhheeECC
Confidence 0011112345555543 2222 2799999999999997754 3322211 1 0 11223455666677
Q ss_pred CHHHHHHHHHHHH
Q 016559 162 SAAVFNDMMTKVN 174 (387)
Q Consensus 162 s~~~~~~ile~~~ 174 (387)
+....+.+.+.+.
T Consensus 175 ~n~~~~~~~~~~~ 187 (276)
T PF05704_consen 175 GNPFIKFWRDLLL 187 (276)
T ss_pred CCHHHHHHHHHHH
Confidence 7666666555544
No 68
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=41.67 E-value=66 Score=25.35 Aligned_cols=70 Identities=23% Similarity=0.334 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCCHHHHHHHHhc-CcEEEEeeeeCCCCCCCCcchhhhhhhhhccccccccEEEEEcCCeeecCCc
Q 016559 59 NKDMVVLVSDGVSDYSKKLLKAD-GWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNI 133 (387)
Q Consensus 59 ~~dlVvLv~d~vs~e~~~~L~~~-g~~v~~I~~i~~p~~~~~~~~~~sy~KL~~~~L~eydRVLYLDaD~lVl~nL 133 (387)
+.+-++++.++-++.+.+.|++. ++.+... . .|. ........+.+..+-...+.+=|+++|+|=++.-+-
T Consensus 18 G~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~--~-~~~--~~~~~~~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 18 GVDHIYIYDDGSTDGTREILRALPGVGIIRW--V-DPY--RDERRQRAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCEEEEEECCCCccHHHHHHhCCCcEEEEe--C-CCc--cchHHHHHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 45667778777777788888875 3333221 1 121 111111122222222335789999999998876443
No 69
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=41.51 E-value=49 Score=29.64 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCCcE-EEEEcCCCCHHHHHHHHhcCcEEEEeeeeCC-CCCCCCcchhhhhhhhhccccccccEEEEE
Q 016559 46 VRVLGKSIRDTGSNKDM-VVLVSDGVSDYSKKLLKADGWIVEKISLLEN-PNQVRPKRFWGVYTKLKIFNMTNYKKVVYL 123 (387)
Q Consensus 46 a~VL~~SL~~~ns~~dl-VvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~-p~~~~~~~~~~sy~KL~~~~L~eydRVLYL 123 (387)
+..++.||.......++ +++++++-++++.+.+++.......+.++.. .+.+ .. ...-...+...-|-|+++
T Consensus 12 l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G----~~--~a~n~g~~~a~gd~i~~l 85 (224)
T cd06442 12 IPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPGKRG----LG--SAYIEGFKAARGDVIVVM 85 (224)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecCCCCC----hH--HHHHHHHHHcCCCEEEEE
Confidence 45667777765432333 5566666555555555543111101122211 1111 01 111122222334789999
Q ss_pred cCCeeec
Q 016559 124 DADTIVI 130 (387)
Q Consensus 124 DaD~lVl 130 (387)
|+|.++.
T Consensus 86 D~D~~~~ 92 (224)
T cd06442 86 DADLSHP 92 (224)
T ss_pred ECCCCCC
Confidence 9998764
No 70
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=40.90 E-value=1.5e+02 Score=29.92 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=52.8
Q ss_pred EEEEEeeCcchHHHHHHHHHHHHHhCCC--CcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCC--CCCCCCcch-----
Q 016559 32 AYVTLLYGDEFLLGVRVLGKSIRDTGSN--KDMVVLVSDGVSDYSKKLLKADGWIVEKISLLEN--PNQVRPKRF----- 102 (387)
Q Consensus 32 Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~--~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~--p~~~~~~~~----- 102 (387)
+.+.+++|. ...+.-++.||++..|. ..-+++..|+-.++..+.++..+..+..+.-... .+...+..+
T Consensus 3 PVlv~ayNR--p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ 80 (334)
T cd02514 3 PVLVIACNR--PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYR 80 (334)
T ss_pred CEEEEecCC--HHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchhhH
Confidence 345566664 33466678888887532 2224455666666666777666422222221110 000000011
Q ss_pred hhh---hhhhhccccccccEEEEEcCCeeecCCchHHh
Q 016559 103 WGV---YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137 (387)
Q Consensus 103 ~~s---y~KL~~~~L~eydRVLYLDaD~lVl~nLdeLF 137 (387)
.+. +..=.+|+..++++||.||.|+++--+.=+.|
T Consensus 81 ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf 118 (334)
T cd02514 81 IARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYF 118 (334)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHH
Confidence 111 11112333346999999999999987743333
No 71
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=40.79 E-value=1.8e+02 Score=26.78 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=49.2
Q ss_pred EEEEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhhhhhhh
Q 016559 31 QAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLK 110 (387)
Q Consensus 31 ~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~sy~KL~ 110 (387)
.+.+..++|+. ....-++.||... .+=+++++++-++.+.+.+++.+.++... +... +. -.+=.
T Consensus 2 isvii~~~Ne~--~~l~~~l~sl~~~---~~eiivvD~gStD~t~~i~~~~~~~v~~~-----~~~g----~~--~~~n~ 65 (229)
T cd02511 2 LSVVIITKNEE--RNIERCLESVKWA---VDEIIVVDSGSTDRTVEIAKEYGAKVYQR-----WWDG----FG--AQRNF 65 (229)
T ss_pred EEEEEEeCCcH--HHHHHHHHHHhcc---cCEEEEEeCCCCccHHHHHHHcCCEEEEC-----CCCC----hH--HHHHH
Confidence 45566667753 2344556677543 13466677776677778888777765432 1111 11 11122
Q ss_pred ccccccccEEEEEcCCeeecCC
Q 016559 111 IFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 111 ~~~L~eydRVLYLDaD~lVl~n 132 (387)
+......|=|+.+|+|.++-.+
T Consensus 66 ~~~~a~~d~vl~lDaD~~~~~~ 87 (229)
T cd02511 66 ALELATNDWVLSLDADERLTPE 87 (229)
T ss_pred HHHhCCCCEEEEEeCCcCcCHH
Confidence 2333556799999999887544
No 72
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=40.78 E-value=1.5e+02 Score=29.90 Aligned_cols=82 Identities=29% Similarity=0.315 Sum_probs=49.5
Q ss_pred CCchHHHHHHHHHHhhhccccCCCCCCCCCEEEEEEeeCcchHHHHHHHHH----------------------HHHHhCC
Q 016559 1 MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGK----------------------SIRDTGS 58 (387)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ayvt~~tdd~Yl~~a~VL~~----------------------SL~~~ns 58 (387)
|+-...+|..+++.++ ...+..+...... +.++.+|+++..+.++=. ++.+.|
T Consensus 1 Mrr~l~lll~~~l~l~---s~~av~A~~~~~~-~VIlvsDn~aD~~lA~~iaellNA~Vlttpwg~ynes~~~eI~~ln- 75 (337)
T COG2247 1 MRRLLMLLLASLLALS---SPPAVSAQSQNTT-VVILVSDNEADLLLALPIAELLNAPVLTTPWGIYNESVLDEIIELN- 75 (337)
T ss_pred CccHHHHHHHHHHHHh---cchhhhhhhcCce-EEEEecchHHHHHHhhHHHHHhCCeeEecCcccccHHHHHHHHhhC-
Confidence 6666777777777666 3333323223332 445666666665554322 223333
Q ss_pred CCcEEEEEc--CCCCHHHHHHHHhcCcEEEEe
Q 016559 59 NKDMVVLVS--DGVSDYSKKLLKADGWIVEKI 88 (387)
Q Consensus 59 ~~dlVvLv~--d~vs~e~~~~L~~~g~~v~~I 88 (387)
.|.|+++. .-+|+...+.|+..|+++..+
T Consensus 76 -pd~VLIIGGp~AVs~~yE~~Lks~GitV~Ri 106 (337)
T COG2247 76 -PDLVLIIGGPIAVSPNYENALKSLGITVKRI 106 (337)
T ss_pred -CceEEEECCCCcCChhHHHHHHhCCcEEEEe
Confidence 46677774 358999999999999988765
No 73
>PRK10073 putative glycosyl transferase; Provisional
Probab=39.62 E-value=85 Score=31.17 Aligned_cols=95 Identities=20% Similarity=0.246 Sum_probs=50.5
Q ss_pred CCEEEEEEeeCcchHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhhhh
Q 016559 29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTG-SNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYT 107 (387)
Q Consensus 29 ~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~sy~ 107 (387)
+....+.-++|.. ....-++.||.... ++.. ++++.|+-++++.+.+++.......|.++..++.+. +-.
T Consensus 6 p~vSVIIP~yN~~--~~L~~~l~Sl~~Qt~~~~E-IIiVdDgStD~t~~i~~~~~~~~~~i~vi~~~n~G~------~~a 76 (328)
T PRK10073 6 PKLSIIIPLYNAG--KDFRAFMESLIAQTWTALE-IIIVNDGSTDNSVEIAKHYAENYPHVRLLHQANAGV------SVA 76 (328)
T ss_pred CeEEEEEeccCCH--HHHHHHHHHHHhCCCCCeE-EEEEeCCCCccHHHHHHHHHhhCCCEEEEECCCCCh------HHH
Confidence 4577777777753 23444568887653 2333 566777766666666665321111222333222211 111
Q ss_pred hhhccccccccEEEEEcCCeeecCC
Q 016559 108 KLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 108 KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
+=...+...-|=|+++|+|..+..+
T Consensus 77 rN~gl~~a~g~yi~flD~DD~~~p~ 101 (328)
T PRK10073 77 RNTGLAVATGKYVAFPDADDVVYPT 101 (328)
T ss_pred HHHHHHhCCCCEEEEECCCCccChh
Confidence 1122233455779999999987655
No 74
>PF01793 Glyco_transf_15: Glycolipid 2-alpha-mannosyltransferase; InterPro: IPR002685 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This entry represents a family of fungi mannosyl-transferases involved in N-linked and O-linked glycosylation of proteins. They belong to the glycosyltransferase family 15 (GT15 from CAZY). Some of the enzymes in this family have been shown to be involved in O- and N-linked glycan modifications in the Golgi [].; GO: 0000030 mannosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 1S4P_A 1S4O_A 1S4N_A.
Probab=39.55 E-value=90 Score=31.59 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=35.9
Q ss_pred CCCCCEEEEEEeeCcchHHHHHHHHHHHHHh-CC--CCcEEEEEcCCCCHHHHHHHHhc
Q 016559 26 SQSTDQAYVTLLYGDEFLLGVRVLGKSIRDT-GS--NKDMVVLVSDGVSDYSKKLLKAD 81 (387)
Q Consensus 26 ~~~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~-ns--~~dlVvLv~d~vs~e~~~~L~~~ 81 (387)
.++.+-|+|+++-|.+ |.+++-+++||-+. |. +||.|+|-.+.++++-++.+++.
T Consensus 52 ~~r~~Aafv~LvrN~d-L~~~l~SI~~lE~rFN~kf~YpwvFlnd~pFteeFk~~i~~~ 109 (328)
T PF01793_consen 52 YPRENAAFVMLVRNSD-LEGLLSSIRSLEDRFNKKFNYPWVFLNDEPFTEEFKEAISNA 109 (328)
T ss_dssp HS---EEEEEE--GGG-HHHHHHHHHHHHHHTTTTS---EEEEESS---HHHHHHHHHH
T ss_pred CCCCceEEEEEEEchh-HHHHHHHHHHHHHHccCCCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 3678899999888764 88999999999865 55 57888888889999988888764
No 75
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=39.01 E-value=1.1e+02 Score=29.52 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=48.5
Q ss_pred EeeCcchHHHHHHHHHHHHHhCCCC-c-EEEEEcCCCCHHHHHHHHhc-C-cEEEEeeeeCCCCCCCCcchhhhhhhhhc
Q 016559 36 LLYGDEFLLGVRVLGKSIRDTGSNK-D-MVVLVSDGVSDYSKKLLKAD-G-WIVEKISLLENPNQVRPKRFWGVYTKLKI 111 (387)
Q Consensus 36 ~~tdd~Yl~~a~VL~~SL~~~ns~~-d-lVvLv~d~vs~e~~~~L~~~-g-~~v~~I~~i~~p~~~~~~~~~~sy~KL~~ 111 (387)
.++|.. ...+.-++.||....+.. . =||+++++=++.+...+.+. . .....+.++..+.. ..+. -.+=..
T Consensus 5 p~~N~~-~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n---~G~~--~a~N~g 78 (299)
T cd02510 5 IFHNEA-LSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKR---EGLI--RARIAG 78 (299)
T ss_pred EEecCc-HHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCC---CCHH--HHHHHH
Confidence 334432 355666788888765432 2 26677766656555555330 0 00012233332211 1111 111122
Q ss_pred cccccccEEEEEcCCeeecCC-chHHhc
Q 016559 112 FNMTNYKKVVYLDADTIVIKN-IEDLFK 138 (387)
Q Consensus 112 ~~L~eydRVLYLDaD~lVl~n-LdeLF~ 138 (387)
.+...-|=|++||+|+++..+ |++|.+
T Consensus 79 ~~~A~gd~i~fLD~D~~~~~~wL~~ll~ 106 (299)
T cd02510 79 ARAATGDVLVFLDSHCEVNVGWLEPLLA 106 (299)
T ss_pred HHHccCCEEEEEeCCcccCccHHHHHHH
Confidence 223567899999999998544 454443
No 76
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=38.98 E-value=94 Score=28.01 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCCCcE-EEEEcCCCCHHHHHHHHhcCcE--EEEeeeeCCCC-CCCCcchhhhhhhhhccccccccE
Q 016559 44 LGVRVLGKSIRDTGSNKDM-VVLVSDGVSDYSKKLLKADGWI--VEKISLLENPN-QVRPKRFWGVYTKLKIFNMTNYKK 119 (387)
Q Consensus 44 ~~a~VL~~SL~~~ns~~dl-VvLv~d~vs~e~~~~L~~~g~~--v~~I~~i~~p~-~~~~~~~~~sy~KL~~~~L~eydR 119 (387)
..+.-++.||.......++ +++++++-++.+.+.+++...+ ...+.++..+. ...... -.+.+=...+..+.|=
T Consensus 10 ~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~a~N~g~~~a~gd~ 87 (219)
T cd06913 10 QWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKG--VGYAKNQAIAQSSGRY 87 (219)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCcc--HHHHHHHHHHhcCCCE
Confidence 3455567788765422233 4556666555555555542111 00111111111 111111 1223334455678899
Q ss_pred EEEEcCCeeecCC
Q 016559 120 VVYLDADTIVIKN 132 (387)
Q Consensus 120 VLYLDaD~lVl~n 132 (387)
|++||+|.++..+
T Consensus 88 i~~lD~D~~~~~~ 100 (219)
T cd06913 88 LCFLDSDDVMMPQ 100 (219)
T ss_pred EEEECCCccCChh
Confidence 9999999987654
No 77
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=38.51 E-value=1.2e+02 Score=28.28 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=50.8
Q ss_pred EEEEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhc---CcEEEEeeeeCCCCCCCCcch--hhh
Q 016559 31 QAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKAD---GWIVEKISLLENPNQVRPKRF--WGV 105 (387)
Q Consensus 31 ~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~~~---g~~v~~I~~i~~p~~~~~~~~--~~s 105 (387)
.||+.++... -...+..++..+. .++.+++|.++...+....+.+++. ...+.. +.......-..+ ..+
T Consensus 1 iAylil~h~~-~~~~~~~l~~~l~--~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~---v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKN-DPEQLERLLRLLY--HPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHF---VPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS---HHHHHHHHHHH----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE----SS-----TTSHHHHHH
T ss_pred CEEEEEecCC-CHHHHHHHHHHhc--CCCCEEEEEEcCCCChHHHHHHHHhcccCCceee---cccccccccCCccHHHH
Confidence 4888777552 3455566666665 5666766667666666666666652 222322 221111111111 112
Q ss_pred hhhhhcccc---ccccEEEEEcCCeeecCCchHHhcC
Q 016559 106 YTKLKIFNM---TNYKKVVYLDADTIVIKNIEDLFKC 139 (387)
Q Consensus 106 y~KL~~~~L---~eydRVLYLDaD~lVl~nLdeLF~l 139 (387)
-.++.-..+ .++|.++.|..+.+.+++.+++.+.
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~ 111 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEF 111 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHH
Confidence 222222222 4899999999999999999988753
No 78
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=36.89 E-value=54 Score=32.83 Aligned_cols=100 Identities=19% Similarity=0.241 Sum_probs=59.2
Q ss_pred CCCCEEEEEEeeCc-chH-HHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhc-----------CcEEEEeeeeCC
Q 016559 27 QSTDQAYVTLLYGD-EFL-LGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKAD-----------GWIVEKISLLEN 93 (387)
Q Consensus 27 ~~~~~Ayvt~~tdd-~Yl-~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~~~-----------g~~v~~I~~i~~ 93 (387)
+..+++.+|-+.++ +.+ .+..+.-.|+ .+.++++++ |+.+.+ .|+.. .|+++.|+.+
T Consensus 61 ~~c~vvV~saIFG~yD~l~qP~~i~~~s~----~~vcf~mF~-D~~t~~---~l~~~~~~~~~~~~ig~WrIv~v~~l-- 130 (305)
T PF04765_consen 61 EKCRVVVYSAIFGNYDKLRQPKNISEYSK----KNVCFFMFV-DEETLK---SLESEGHIPDENKKIGIWRIVVVKNL-- 130 (305)
T ss_pred hcCCEEEEEEecCCCccccCchhhCHHHh----cCccEEEEE-ehhhHH---HHHhcCCccccccccCceEEEEecCC--
Confidence 46678888888764 233 2333222222 245554444 544443 33331 2566665433
Q ss_pred CCCCCCcchhhhhhhhhcccc-ccccEEEEEcCCeeecCCchHHhc
Q 016559 94 PNQVRPKRFWGVYTKLKIFNM-TNYKKVVYLDADTIVIKNIEDLFK 138 (387)
Q Consensus 94 p~~~~~~~~~~sy~KL~~~~L-~eydRVLYLDaD~lVl~nLdeLF~ 138 (387)
|. .+.+-.+-+.|++.-.+ ++|+--||+|+-+-++.|+..|.+
T Consensus 131 p~--~d~rr~~r~~K~lpHrlfp~y~ySIWID~ki~L~~Dp~~lie 174 (305)
T PF04765_consen 131 PY--DDPRRNGRIPKLLPHRLFPNYDYSIWIDGKIQLIVDPLLLIE 174 (305)
T ss_pred CC--cchhhcCcccceeccccCCCCceEEEEeeeEEEecCHHHHHH
Confidence 21 12222456789888876 999999999999999999877664
No 79
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=35.31 E-value=1.8e+02 Score=30.55 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=49.7
Q ss_pred CCCEEEEEEeeCc-chHHHHHHHHHHHHHhCC---CCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCC-CCCCCCc--
Q 016559 28 STDQAYVTLLYGD-EFLLGVRVLGKSIRDTGS---NKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLEN-PNQVRPK-- 100 (387)
Q Consensus 28 ~~~~Ayvt~~tdd-~Yl~~a~VL~~SL~~~ns---~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~-p~~~~~~-- 100 (387)
....+.+.+++|. .|+ .-++.||.++.+ ..+++ +..|+-.++..+.++..|..+..|...+. +....+.
T Consensus 92 ~~~~pVlV~AcNRp~yl---~r~L~sLl~~rp~~~~fpIi-VSQDg~~~~~~~vi~~y~~~v~~i~~~~~~~i~~~~~~~ 167 (434)
T PF03071_consen 92 EPVIPVLVFACNRPDYL---RRTLDSLLKYRPSAEKFPII-VSQDGDDEEVAEVIKSYGDQVTYIQHPDFSPITIPPKEK 167 (434)
T ss_dssp -----EEEEESS-TT-H---HHHHHHHHHH-S-TTTS-EE-EEE-TT-HHHHHHHHGGGGGSEEEE-S--S-----TT-G
T ss_pred CCcceEEEEecCCcHHH---HHHHHHHHHcCCCCCCccEE-EEecCCcHHHHHHHHHhhhhheeeecCCcCCceeCcccc
Confidence 4456777777874 664 445677777644 34443 34456667777788877644333322110 1001111
Q ss_pred ch-----hhhhhhhh---ccccccccEEEEEcCCeeecCCchHHhcC
Q 016559 101 RF-----WGVYTKLK---IFNMTNYKKVVYLDADTIVIKNIEDLFKC 139 (387)
Q Consensus 101 ~~-----~~sy~KL~---~~~L~eydRVLYLDaD~lVl~nLdeLF~l 139 (387)
.+ .+.-+|.. +|....|++||.|.-|+.+--|.=+.|.-
T Consensus 168 ~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~ 214 (434)
T PF03071_consen 168 KFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSA 214 (434)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHH
Confidence 11 11112221 33334799999999999997776555553
No 80
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=35.24 E-value=2.4e+02 Score=28.26 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=51.9
Q ss_pred CCEEEEEEeeCcchHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHhcCcEE-EEeeeeCCCCCCCCcchhhhh
Q 016559 29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTG-SNKDMVVLVSDGVSDYSKKLLKADGWIV-EKISLLENPNQVRPKRFWGVY 106 (387)
Q Consensus 29 ~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~n-s~~dlVvLv~d~vs~e~~~~L~~~g~~v-~~I~~i~~p~~~~~~~~~~sy 106 (387)
++...+.=++|++-- ...-++.|+...+ ++++ |+++.|+-+++..+.+++.+... ..+..+..+...+.+ ..+..
T Consensus 54 p~vsviiP~ynE~~~-~~~~~l~s~~~~dyp~~e-vivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK-~~al~ 130 (439)
T COG1215 54 PKVSVIIPAYNEEPE-VLEETLESLLSQDYPRYE-VIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGK-AGALN 130 (439)
T ss_pred CceEEEEecCCCchh-hHHHHHHHHHhCCCCCce-EEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccc-hHHHH
Confidence 677777777886431 1222344444443 5556 45566777788888888765332 122222110111111 01111
Q ss_pred hhhhccccccccEEEEEcCCeeecCC
Q 016559 107 TKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 107 ~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
. ......+|=|+.+|||+++-.|
T Consensus 131 ~---~l~~~~~d~V~~~DaD~~~~~d 153 (439)
T COG1215 131 N---GLKRAKGDVVVILDADTVPEPD 153 (439)
T ss_pred H---HHhhcCCCEEEEEcCCCCCChh
Confidence 1 1222459999999999998765
No 81
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=33.71 E-value=27 Score=33.16 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=55.8
Q ss_pred cccccEEEEEcCCeeecCC---chHHhcChhhhhcc--C-CCCcccceEEEEeCCHHHHHHHHHHHHh----cCCCCCCh
Q 016559 114 MTNYKKVVYLDADTIVIKN---IEDLFKCRKFCANL--K-HSERLNSGVMVVEPSAAVFNDMMTKVNT----LGSYTGGD 183 (387)
Q Consensus 114 L~eydRVLYLDaD~lVl~n---LdeLF~l~~~~Aa~--~-~~~yfNSGVmvinps~~~~~~ile~~~~----~~~~~~~D 183 (387)
|++||=||+||+|+.|+++ |+|..+-.. -.-+ . ...-+.||--+++.+...-+-+.+++.- ..++.+.|
T Consensus 39 L~~~~~vlflDaDigVvNp~~~iEefid~~~-Di~fydR~~n~Ei~agsYlvkNT~~~~~fl~~~a~~E~~lP~sfhGtD 117 (222)
T PF03314_consen 39 LPEYDWVLFLDADIGVVNPNRRIEEFIDEGY-DIIFYDRFFNWEIAAGSYLVKNTEYSRDFLKEWADYEFKLPNSFHGTD 117 (222)
T ss_pred hccCCEEEEEcCCceeecCcccHHHhcCCCC-cEEEEecccchhhhhccceeeCCHHHHHHHHHHhhhCccCCCccccCc
Confidence 4899999999999999976 344332111 0000 0 1223567777788776555555554431 24677899
Q ss_pred HHHHHHHhcCCCCCcccCCCCCcc
Q 016559 184 QGFLNSYYSDFPNAHVFEPNLPLE 207 (387)
Q Consensus 184 QdiLN~~f~d~~~~~~f~p~~~~~ 207 (387)
-+.|..+.... +.|+...|
T Consensus 118 NGAlH~~L~e~-----l~P~~~~e 136 (222)
T PF03314_consen 118 NGALHIFLAEK-----LFPESSIE 136 (222)
T ss_pred cHHHHHHHHHH-----hCccccHH
Confidence 99999998873 56665443
No 82
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=33.49 E-value=3.6e+02 Score=24.27 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.1
Q ss_pred cccEEEEEcCCeeecC
Q 016559 116 NYKKVVYLDADTIVIK 131 (387)
Q Consensus 116 eydRVLYLDaD~lVl~ 131 (387)
++|=|+++|+|+++-.
T Consensus 84 ~~d~i~~lD~D~~~~~ 99 (236)
T cd06435 84 DAEIIAVIDADYQVEP 99 (236)
T ss_pred CCCEEEEEcCCCCcCH
Confidence 4889999999987643
No 83
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism]
Probab=33.11 E-value=16 Score=37.15 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=49.7
Q ss_pred hhhhhhhccccccccEEEEEcCCeeecCCchHHhcChhhh--hcc--------CCCCcccceEEEEeCCHHHHHHHHHHH
Q 016559 104 GVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFC--ANL--------KHSERLNSGVMVVEPSAAVFNDMMTKV 173 (387)
Q Consensus 104 ~sy~KL~~~~L~eydRVLYLDaD~lVl~nLdeLF~l~~~~--Aa~--------~~~~yfNSGVmvinps~~~~~~ile~~ 173 (387)
..+.++.+|++.++.+.+|+|.|+-...++++.|+.+... +.+ .....+.+|...+++....++.+-+..
T Consensus 112 ~~~~~~~~~~~~~~~a~i~~~~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~~~~ 191 (369)
T KOG1950|consen 112 LRDDKIKIWRLIEDGAAIYLVDDIQRFRNDDANFDVPNELNYAKLYMFQLDFYSKLVKIDADDCILKNDDLLFSNWPDLF 191 (369)
T ss_pred ecccceeecceeccCceEEEecchhhccCccccccccchhcccccceeeecccccceEEeccchhcCChhhhhhhchhhc
Confidence 3478899999999999999999999999999999997432 111 122345555656666555555544443
Q ss_pred H
Q 016559 174 N 174 (387)
Q Consensus 174 ~ 174 (387)
.
T Consensus 192 ~ 192 (369)
T KOG1950|consen 192 A 192 (369)
T ss_pred c
Confidence 3
No 84
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=32.03 E-value=91 Score=26.84 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCC---CCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhhhhhhhccccccccEEE
Q 016559 45 GVRVLGKSIRDTGS---NKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVV 121 (387)
Q Consensus 45 ~a~VL~~SL~~~ns---~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~sy~KL~~~~L~eydRVL 121 (387)
.+.-++.|+.+... ... ++++.++-+++..+.+++.+.+...+.++..+..... ..... .......-|=|+
T Consensus 11 ~l~~~l~sl~~~~~~~~~~e-iivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G~---~~a~n--~g~~~a~gd~i~ 84 (185)
T cd04179 11 NIPELVERLLAVLEEGYDYE-IIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFGK---GAAVR--AGFKAARGDIVV 84 (185)
T ss_pred hHHHHHHHHHHHhccCCCEE-EEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCCc---cHHHH--HHHHHhcCCEEE
Confidence 34456777777643 333 4556555555566666654332212222222211111 11111 112222237899
Q ss_pred EEcCCeeecCC-chHHhc
Q 016559 122 YLDADTIVIKN-IEDLFK 138 (387)
Q Consensus 122 YLDaD~lVl~n-LdeLF~ 138 (387)
.||+|..+..+ ++++..
T Consensus 85 ~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 85 TMDADLQHPPEDIPKLLE 102 (185)
T ss_pred EEeCCCCCCHHHHHHHHH
Confidence 99999887544 455554
No 85
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=30.90 E-value=98 Score=30.41 Aligned_cols=52 Identities=10% Similarity=0.289 Sum_probs=37.6
Q ss_pred CCCCCCCCCEEEEEEeeCc------chHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHH
Q 016559 22 AAIGSQSTDQAYVTLLYGD------EFLLGVRVLGKSIRDTG-SNKDMVVLVSDGVSDY 73 (387)
Q Consensus 22 ~~~~~~~~~~Ayvt~~tdd------~Yl~~a~VL~~SL~~~n-s~~dlVvLv~d~vs~e 73 (387)
+++.+.....-|+.+++.. ..+..+..+..|+++.| |+..+++|..|+..-+
T Consensus 19 ~~d~~~~htnNwAVLv~tSRfwfNYRH~aNvl~~YrsvKrlGipDsqIilmladd~acn 77 (309)
T KOG1349|consen 19 GSDAAKGHTNNWAVLVCTSRFWFNYRHVANVLSVYRSVKRLGIPDSQIILMLADDMACN 77 (309)
T ss_pred cchhhhhccCceEEEEecchhhhhHHHHHHHHHHHHHHHHcCCCcccEEEEeccccccc
Confidence 4444444677788888664 34567788899999998 7888888887776543
No 86
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=29.49 E-value=1.6e+02 Score=27.23 Aligned_cols=96 Identities=18% Similarity=0.256 Sum_probs=46.2
Q ss_pred CCCCEEEEEEeeCcchHHHHHHHHHHHHHhCCCC-cE-EEEEcCCCCHHHHHHHHhcCcE--EEEeeeeCCCCCCCCcch
Q 016559 27 QSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNK-DM-VVLVSDGVSDYSKKLLKADGWI--VEKISLLENPNQVRPKRF 102 (387)
Q Consensus 27 ~~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~-dl-VvLv~d~vs~e~~~~L~~~g~~--v~~I~~i~~p~~~~~~~~ 102 (387)
+.++...|.-++|+.-. ...++.+|.+..... ++ +++++++=++++.+.+++.... ...+.++..+... ..
T Consensus 7 ~~~~vsVvIp~yne~~~--l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~---G~ 81 (243)
T PLN02726 7 GAMKYSIIVPTYNERLN--IALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKL---GL 81 (243)
T ss_pred CCceEEEEEccCCchhh--HHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCC---CH
Confidence 34567777777886422 223445555432211 33 4556665555566665553111 0112222221110 11
Q ss_pred hhhhhhhhccccccccEEEEEcCCeee
Q 016559 103 WGVYTKLKIFNMTNYKKVVYLDADTIV 129 (387)
Q Consensus 103 ~~sy~KL~~~~L~eydRVLYLDaD~lV 129 (387)
...+ -.......-|-|+++|+|...
T Consensus 82 ~~a~--n~g~~~a~g~~i~~lD~D~~~ 106 (243)
T PLN02726 82 GTAY--IHGLKHASGDFVVIMDADLSH 106 (243)
T ss_pred HHHH--HHHHHHcCCCEEEEEcCCCCC
Confidence 1111 122234567899999999875
No 87
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=29.35 E-value=1.8e+02 Score=25.86 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHH
Q 016559 45 GVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLK 79 (387)
Q Consensus 45 ~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~ 79 (387)
...-++.||....++.. +++++++-++++.+.++
T Consensus 11 ~l~~~l~sl~~~~~~~e-Iivvdd~S~D~t~~~~~ 44 (191)
T cd06436 11 VIQRTLASLLRNKPNFL-VLVIDDASDDDTAGIVR 44 (191)
T ss_pred HHHHHHHHHHhCCCCeE-EEEEECCCCcCHHHHHh
Confidence 34557788887654433 55666666666777776
No 88
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=29.17 E-value=4.4e+02 Score=29.30 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.1
Q ss_pred cccccEEEEEcCCeeecCC
Q 016559 114 MTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 114 L~eydRVLYLDaD~lVl~n 132 (387)
..+.|=|+.+|||+++..|
T Consensus 226 ~a~gd~Il~lDAD~v~~pd 244 (713)
T TIGR03030 226 HTDGELILIFDADHVPTRD 244 (713)
T ss_pred hcCCCEEEEECCCCCcChh
Confidence 4677999999999998765
No 89
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=24.89 E-value=4.1e+02 Score=22.18 Aligned_cols=78 Identities=12% Similarity=0.039 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhcccc--CCCCC----------CCCCEEEEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCH
Q 016559 5 PKLLTFVLIALLSIQSR--AAIGS----------QSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSD 72 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~--~~~~~----------~~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~ 72 (387)
-+.++..++.+--|+.- ++..| ..++ +.+...++..+...+.-++..|++.+++ ++.+++....++
T Consensus 15 G~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d-~V~iS~~~~~~~~~~~~~~~~L~~~~~~-~i~i~~GG~~~~ 92 (122)
T cd02071 15 GAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVD-VIGLSSLSGGHMTLFPEVIELLRELGAG-DILVVGGGIIPP 92 (122)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCC-EEEEcccchhhHHHHHHHHHHHHhcCCC-CCEEEEECCCCH
Confidence 34555556666555543 22222 1222 2333334567999999999999998776 555666656777
Q ss_pred HHHHHHHhcCcE
Q 016559 73 YSKKLLKADGWI 84 (387)
Q Consensus 73 e~~~~L~~~g~~ 84 (387)
+..+.+++.|+.
T Consensus 93 ~~~~~~~~~G~d 104 (122)
T cd02071 93 EDYELLKEMGVA 104 (122)
T ss_pred HHHHHHHHCCCC
Confidence 778899998854
No 90
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.59 E-value=5.5e+02 Score=28.11 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=55.7
Q ss_pred CCCCEEEEEEeeCc---chHHHHHHHHHHHHHhCC--CCcEEEEEcCC-----CCHHH-HHHHH-hcC--cEE-EEeeee
Q 016559 27 QSTDQAYVTLLYGD---EFLLGVRVLGKSIRDTGS--NKDMVVLVSDG-----VSDYS-KKLLK-ADG--WIV-EKISLL 91 (387)
Q Consensus 27 ~~~~~Ayvt~~tdd---~Yl~~a~VL~~SL~~~ns--~~dlVvLv~d~-----vs~e~-~~~L~-~~g--~~v-~~I~~i 91 (387)
+..+-|.+.=++|+ .-+-+...+..||.+++. +.|+.|+-+.. +.|+. --.|. +.+ .++ ....
T Consensus 142 ~~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~ifYRrR-- 219 (736)
T COG2943 142 DLHRTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSDSRDPDIALAEQKAWAELCRELGGEGNIFYRRR-- 219 (736)
T ss_pred cccceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCCCCchhhhhHHHHHHHHHHHhCCCCceeeehH--
Confidence 34668888888886 466789999999999987 45655544322 22221 11222 222 222 1111
Q ss_pred CCCCCCCCcchhhhhhhhhccccccccEEEEEcCCeeecCC
Q 016559 92 ENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 92 ~~p~~~~~~~~~~sy~KL~~~~L~eydRVLYLDaD~lVl~n 132 (387)
..+.++...-++.|.|=+ . ..|+..|.||+|.+..++
T Consensus 220 -r~n~~RKaGNIaDfcrRw--G-~~Y~~MlVLDADSvMtgd 256 (736)
T COG2943 220 -RRNVKRKAGNIADFCRRW--G-SAYSYMLVLDADSVMTGD 256 (736)
T ss_pred -hhhhcccccCHHHHHHHh--C-cccceEEEeecccccCch
Confidence 111222222233333321 1 689999999999998876
No 91
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.76 E-value=2.6e+02 Score=24.17 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=36.7
Q ss_pred eCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhcCcE
Q 016559 38 YGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84 (387)
Q Consensus 38 tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~~~g~~ 84 (387)
.+..|...+.-++..|++.+.+ ++.+++...++++..+.|++.|+.
T Consensus 62 l~~~~~~~~~~~~~~L~~~g~~-~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 62 LAGGHLTLVPALRKELDKLGRP-DILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred chhhhHHHHHHHHHHHHhcCCC-CCEEEEeCCCChHhHHHHHHCCCC
Confidence 4567999999999999998765 556667666888888899999864
No 92
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.39 E-value=4.3e+02 Score=23.28 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=44.4
Q ss_pred EEEeeCcchHHHHHHHHHHHHHhC-CCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCCCCcchhhhhhhhhcc
Q 016559 34 VTLLYGDEFLLGVRVLGKSIRDTG-SNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIF 112 (387)
Q Consensus 34 vt~~tdd~Yl~~a~VL~~SL~~~n-s~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~~~~~~~~sy~KL~~~ 112 (387)
++.++|.. ..+.-++.||.... +..+ ++++.++-+++..+.+++.+..+ +..+.. ..... -...
T Consensus 4 ii~~~n~~--~~l~~~l~sl~~q~~~~~e-vivvdd~s~d~~~~~~~~~~~~~-----~~~~~g-----~~~a~--n~g~ 68 (221)
T cd02522 4 IIPTLNEA--ENLPRLLASLRRLNPLPLE-IIVVDGGSTDGTVAIARSAGVVV-----ISSPKG-----RARQM--NAGA 68 (221)
T ss_pred EEEccCcH--HHHHHHHHHHHhccCCCcE-EEEEeCCCCccHHHHHhcCCeEE-----EeCCcC-----HHHHH--HHHH
Confidence 33444542 23556777887654 3334 45566666666667776633222 211111 11111 1222
Q ss_pred ccccccEEEEEcCCeeecCC
Q 016559 113 NMTNYKKVVYLDADTIVIKN 132 (387)
Q Consensus 113 ~L~eydRVLYLDaD~lVl~n 132 (387)
.....+-|+.+|+|..+..+
T Consensus 69 ~~a~~~~i~~~D~D~~~~~~ 88 (221)
T cd02522 69 AAARGDWLLFLHADTRLPPD 88 (221)
T ss_pred HhccCCEEEEEcCCCCCChh
Confidence 33457899999999888543
No 93
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=21.22 E-value=2.1e+02 Score=25.75 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.0
Q ss_pred cccEEEEEcCCeeecCC-chHH
Q 016559 116 NYKKVVYLDADTIVIKN-IEDL 136 (387)
Q Consensus 116 eydRVLYLDaD~lVl~n-LdeL 136 (387)
++|-|+++|+|+++-.+ ++++
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHH
Confidence 68999999999998654 4555
No 94
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=20.54 E-value=7.8e+02 Score=25.12 Aligned_cols=105 Identities=14% Similarity=0.244 Sum_probs=56.5
Q ss_pred CCCCEEEEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCC----------HHHHHHHHhcCcEEEEeeeeCCCCC
Q 016559 27 QSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVS----------DYSKKLLKADGWIVEKISLLENPNQ 96 (387)
Q Consensus 27 ~~~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs----------~e~~~~L~~~g~~v~~I~~i~~p~~ 96 (387)
+.++..|=.+..+.+ .-+|--.|.+..+-.|..|++..+.+ .++++.++....++..+.+-..+..
T Consensus 76 ~~pRrV~D~~~f~~E----lDlLeiRl~eL~~vVD~FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~KIiy~~l~~~~~~ 151 (356)
T PF04724_consen 76 KTPRRVYDCFLFNNE----LDLLEIRLNELYDVVDYFVIVESNRTFTGKPKPLYFAENKERFAFFHDKIIYVTLDDPPEK 151 (356)
T ss_pred CCCCeEEEEEEeCCh----HHHHHHHHHHhhCcceEEEEEEECCCcCCCCCCccHHHHHHHHHhhhcceEEEEecCcCCC
Confidence 345556655665542 56677788888888888777753322 1244555544444544433222222
Q ss_pred CCCcch-hhhhhhhhcccc---ccccEEEEEcCCeeecCCchHHhcCh
Q 016559 97 VRPKRF-WGVYTKLKIFNM---TNYKKVVYLDADTIVIKNIEDLFKCR 140 (387)
Q Consensus 97 ~~~~~~-~~sy~KL~~~~L---~eydRVLYLDaD~lVl~nLdeLF~l~ 140 (387)
.....| .+.+.|=.+..+ .+. =|.|++++.|+||+..-.
T Consensus 152 g~~~~w~~E~~qR~~l~~l~~~~~~-----~~dDliivSDvDEIP~p~ 194 (356)
T PF04724_consen 152 GRKDPWDRENYQRNALNGLLRLAGI-----QDDDLIIVSDVDEIPSPE 194 (356)
T ss_pred CCCchhHHHHHHHHHHHHHhhhcCC-----CCCCEEEEcCcccccCHH
Confidence 222334 244554444332 121 267888888888876543
Done!