BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016562
         (387 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YZ0|A Chain A, Solution Structure Of RwdGI DOMAIN OF SACCHAROMYCES
           Cerevisiae Gcn2
          Length = 138

 Score = 32.0 bits (71), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 168 YCLCCGSHFAGPVYEMKDYLEWTERKGIWSEPWPSPYAATLRAILQAGV--CMALYLYLV 225
           Y + C    A     M D+ + T+RK  W +     +  TLR++ +  V   + L+  + 
Sbjct: 12  YEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKEPVESSITLHFAMT 71

Query: 226 PQYPLT 231
           P YP T
Sbjct: 72  PMYPYT 77


>pdb|1FSU|A Chain A, 4-Sulfatase (Human)
          Length = 492

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 19/72 (26%)

Query: 74  LLGYLSMAIYRAKC-----GIITFFLGFGYLIGCHVYYMSGDAWKEGGIDATGALMVLTL 128
           ++G   + +YR +C     G  T+F   GYL+G   YY                 ++  L
Sbjct: 101 MVGKWHLGMYRKECLPTRRGFDTYF---GYLLGSEDYYSH-----------ERCTLIDAL 146

Query: 129 KVISCAINYNDG 140
            V  CA+++ DG
Sbjct: 147 NVTRCALDFRDG 158


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.468 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,567,762
Number of Sequences: 62578
Number of extensions: 463613
Number of successful extensions: 1095
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 2
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)