Query 016562
Match_columns 387
No_of_seqs 127 out of 1323
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 15:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2da7_A Zinc finger homeobox pr 23.0 69 0.0024 22.6 3.1 22 4-25 33-54 (71)
2 1rmk_A MU-O-conotoxin mrvib; b 20.2 20 0.00068 20.6 -0.2 19 163-181 11-29 (31)
3 1wi3_A DNA-binding protein SAT 17.0 1E+02 0.0036 21.7 2.9 19 4-22 36-54 (71)
4 3nau_A Zinc fingers and homeob 14.3 1.1E+02 0.0037 21.3 2.4 19 4-22 32-50 (66)
5 1akh_A Protein (mating-type pr 13.2 1.1E+02 0.0039 20.0 2.3 18 5-22 34-51 (61)
6 1ig7_A Homeotic protein MSX-1; 13.2 1.2E+02 0.0041 19.7 2.4 18 5-22 29-46 (58)
7 3a03_A T-cell leukemia homeobo 13.1 1.2E+02 0.0041 19.6 2.4 18 5-22 26-43 (56)
8 3rkq_A Homeobox protein NKX-2. 12.7 1.2E+02 0.0043 19.4 2.4 19 4-22 30-48 (58)
9 1jgg_A Segmentation protein EV 12.6 1.2E+02 0.0042 19.9 2.3 18 5-22 30-47 (60)
10 2hdd_A Protein (engrailed home 11.9 1.4E+02 0.0046 19.7 2.4 18 5-22 32-49 (61)
No 1
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.02 E-value=69 Score=22.63 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=18.2
Q ss_pred hhHHHHHhhhCCChhHHHHHHH
Q 016562 4 LEMESMAGSIGVSVAVLRFLLC 25 (387)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~l~~ 25 (387)
..++.||+.+|+|.+.++-=++
T Consensus 33 eei~~LA~~lgL~~~VVrVWFq 54 (71)
T 2da7_A 33 DELLKISIAVGLPQEFVKEWFE 54 (71)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHh
Confidence 4688999999999998886543
No 2
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=20.15 E-value=20 Score=20.58 Aligned_cols=19 Identities=26% Similarity=0.894 Sum_probs=16.2
Q ss_pred HHHHHHhhccCcccccccc
Q 016562 163 IEYIGYCLCCGSHFAGPVY 181 (387)
Q Consensus 163 l~yl~Y~~~fp~~l~GP~~ 181 (387)
-..++++++.|+++-||.+
T Consensus 11 ~~i~G~i~CC~GLIC~~~~ 29 (31)
T 1rmk_A 11 VPILGFVYCCPGLICGPFV 29 (31)
T ss_dssp CCTTCCCEESTTCCBCSSS
T ss_pred cceEEEEEecCCceEeeEE
Confidence 3467899999999999985
No 3
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=17.04 E-value=1e+02 Score=21.65 Aligned_cols=19 Identities=0% Similarity=0.106 Sum_probs=16.0
Q ss_pred hhHHHHHhhhCCChhHHHH
Q 016562 4 LEMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~ 22 (387)
...+.||..+|+|++++..
T Consensus 36 ~~r~~La~~tGL~~~~IqV 54 (71)
T 1wi3_A 36 EAIHTLSAQLDLPKHTIIK 54 (71)
T ss_dssp HHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHH
Confidence 3578999999999998864
No 4
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=14.32 E-value=1.1e+02 Score=21.27 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=16.1
Q ss_pred hhHHHHHhhhCCChhHHHH
Q 016562 4 LEMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~ 22 (387)
...+.||..+|+++.|++-
T Consensus 32 ~er~eLA~~tgLt~~qVkv 50 (66)
T 3nau_A 32 AEVYRLIEVTGLARSEIKK 50 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHhCcCHHHhhH
Confidence 4568899999999999864
No 5
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=13.24 E-value=1.1e+02 Score=20.03 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.2
Q ss_pred hHHHHHhhhCCChhHHHH
Q 016562 5 EMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 5 ~~~~~~~~~g~~~d~~~~ 22 (387)
..+.||..+|+++.|+..
T Consensus 34 ~r~~La~~~~l~~~qV~~ 51 (61)
T 1akh_A 34 EKEEVAKKCGITPLQVRV 51 (61)
T ss_dssp HHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHH
Confidence 467899999999999864
No 6
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=13.16 E-value=1.2e+02 Score=19.65 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=15.2
Q ss_pred hHHHHHhhhCCChhHHHH
Q 016562 5 EMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 5 ~~~~~~~~~g~~~d~~~~ 22 (387)
..+.||..+|+++.++..
T Consensus 29 ~r~~La~~l~l~~~qV~~ 46 (58)
T 1ig7_A 29 ERAEFSSSLSLTETQVKI 46 (58)
T ss_dssp HHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHCcCHHHhhh
Confidence 467899999999999864
No 7
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=13.09 E-value=1.2e+02 Score=19.62 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=15.1
Q ss_pred hHHHHHhhhCCChhHHHH
Q 016562 5 EMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 5 ~~~~~~~~~g~~~d~~~~ 22 (387)
..+.||..+|+++.++..
T Consensus 26 ~r~~LA~~l~l~~~qV~~ 43 (56)
T 3a03_A 26 ERAALAKALRMTDAQVKT 43 (56)
T ss_dssp HHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCcCHHHhhH
Confidence 457899999999999874
No 8
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=12.71 E-value=1.2e+02 Score=19.44 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=15.4
Q ss_pred hhHHHHHhhhCCChhHHHH
Q 016562 4 LEMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~ 22 (387)
...+.||..+|+++.++..
T Consensus 30 ~~r~~La~~l~l~~~qV~~ 48 (58)
T 3rkq_A 30 PERDQLASVLKLTSTQVKI 48 (58)
T ss_dssp HHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHH
Confidence 3567899999999998764
No 9
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=12.60 E-value=1.2e+02 Score=19.85 Aligned_cols=18 Identities=6% Similarity=0.224 Sum_probs=15.1
Q ss_pred hHHHHHhhhCCChhHHHH
Q 016562 5 EMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 5 ~~~~~~~~~g~~~d~~~~ 22 (387)
..+.||..+|+++.++..
T Consensus 30 ~r~~La~~l~l~~~qV~~ 47 (60)
T 1jgg_A 30 RRCELAAQLNLPESTIKV 47 (60)
T ss_dssp HHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHH
Confidence 467899999999999864
No 10
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=11.93 E-value=1.4e+02 Score=19.71 Aligned_cols=18 Identities=11% Similarity=0.422 Sum_probs=15.2
Q ss_pred hHHHHHhhhCCChhHHHH
Q 016562 5 EMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 5 ~~~~~~~~~g~~~d~~~~ 22 (387)
..+.||..+|+++.++..
T Consensus 32 ~r~~La~~l~l~~~qV~~ 49 (61)
T 2hdd_A 32 RRQQLSSELGLNEAQIKI 49 (61)
T ss_dssp HHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHH
Confidence 467899999999999864
Done!