Query 016562
Match_columns 387
No_of_seqs 127 out of 1323
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 15:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016562.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016562hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rmka_ g.3.6.1 (A:) Conotoxin 72.8 0.31 2.3E-05 26.2 -0.2 21 161-181 9-29 (31)
2 d1l0oc_ a.4.13.2 (C:) SigmaF { 32.5 15 0.0011 23.1 2.7 19 6-24 34-52 (57)
3 d1e3oc1 a.4.1.1 (C:104-160) Oc 25.4 22 0.0016 22.2 2.6 19 4-22 26-44 (57)
4 d1au7a1 a.4.1.1 (A:103-160) Pi 24.6 21 0.0016 22.3 2.4 19 4-22 27-45 (58)
5 d1nd9a_ a.6.1.6 (A:) N-termina 23.9 12 0.00085 23.0 0.9 15 6-20 5-19 (49)
6 d1p7ia_ a.4.1.1 (A:) Engrailed 23.5 26 0.0019 21.4 2.6 19 4-22 27-45 (53)
7 d2craa1 a.4.1.1 (A:7-64) Homeo 22.4 28 0.002 21.8 2.6 19 4-22 29-47 (58)
8 d1s7ea1 a.4.1.1 (A:103-152) He 20.7 23 0.0016 21.3 1.8 19 4-22 26-44 (50)
9 d2cqxa1 a.4.1.1 (A:8-66) LAG1 20.1 30 0.0022 21.7 2.4 19 4-22 30-48 (59)
10 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 20.0 33 0.0024 21.3 2.6 19 4-22 28-46 (58)
No 1
>d1rmka_ g.3.6.1 (A:) Conotoxin {Marble cone (Conus marmoreus), mrVIb [TaxId: 42752]}
Probab=72.80 E-value=0.31 Score=26.22 Aligned_cols=21 Identities=24% Similarity=0.855 Sum_probs=17.7
Q ss_pred CHHHHHHHhhccCcccccccc
Q 016562 161 SLIEYIGYCLCCGSHFAGPVY 181 (387)
Q Consensus 161 sll~yl~Y~~~fp~~l~GP~~ 181 (387)
-+...++|+++.|+++.||..
T Consensus 9 civpi~gfiyccpglicgpfv 29 (31)
T d1rmka_ 9 CIVPILGFVYCCPGLICGPFV 29 (31)
T ss_dssp CCCCTTCCCEESTTCCBCSSS
T ss_pred EEeeeeeeeeeCCCcccccee
Confidence 445578999999999999975
No 2
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=32.45 E-value=15 Score=23.09 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=16.3
Q ss_pred HHHHHhhhCCChhHHHHHH
Q 016562 6 MESMAGSIGVSVAVLRFLL 24 (387)
Q Consensus 6 ~~~~~~~~g~~~d~~~~l~ 24 (387)
.+.+|+.+|+|+|++..++
T Consensus 34 ~~EiA~~l~~~~e~V~~~l 52 (57)
T d1l0oc_ 34 VTEIADHLGISPEDVVLAQ 52 (57)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 5789999999999997654
No 3
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.40 E-value=22 Score=22.19 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=16.4
Q ss_pred hhHHHHHhhhCCChhHHHH
Q 016562 4 LEMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~ 22 (387)
...+.||..+|++++++..
T Consensus 26 ~~~~~LA~~lgL~~~qV~~ 44 (57)
T d1e3oc1 26 EDITLIAEQLNMEKEVIRV 44 (57)
T ss_dssp HHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHH
Confidence 5678999999999999864
No 4
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.55 E-value=21 Score=22.31 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=16.4
Q ss_pred hhHHHHHhhhCCChhHHHH
Q 016562 4 LEMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~ 22 (387)
...+.||..+|+++++++.
T Consensus 27 ~~~~~La~~l~l~~~~V~~ 45 (58)
T d1au7a1 27 QEIMRMAEELNLEKEVVRV 45 (58)
T ss_dssp HHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHH
Confidence 4678999999999999875
No 5
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=23.87 E-value=12 Score=23.01 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=11.7
Q ss_pred HHHHHhhhCCChhHH
Q 016562 6 MESMAGSIGVSVAVL 20 (387)
Q Consensus 6 ~~~~~~~~g~~~d~~ 20 (387)
+.++|+.+|.|+|.+
T Consensus 5 Vk~lA~~v~~~vd~L 19 (49)
T d1nd9a_ 5 IKTLAAERQTSVERL 19 (49)
T ss_dssp TTHHHHHHSSSHHHH
T ss_pred HHHHHHHHCcCHHHH
Confidence 467888888888865
No 6
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=23.49 E-value=26 Score=21.44 Aligned_cols=19 Identities=11% Similarity=0.361 Sum_probs=16.2
Q ss_pred hhHHHHHhhhCCChhHHHH
Q 016562 4 LEMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~ 22 (387)
...+.||..+|+++.+++.
T Consensus 27 ~~r~~LA~~lgL~~~qV~v 45 (53)
T d1p7ia_ 27 RRRQQLSSELGLNEAQIKI 45 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhCCChHHhhh
Confidence 4568899999999999875
No 7
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.36 E-value=28 Score=21.79 Aligned_cols=19 Identities=5% Similarity=0.083 Sum_probs=16.3
Q ss_pred hhHHHHHhhhCCChhHHHH
Q 016562 4 LEMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~ 22 (387)
...+.||..+|+++.++..
T Consensus 29 ~~r~~LA~~l~l~~~qV~v 47 (58)
T d2craa1 29 DKRRKISAATSLSERQITI 47 (58)
T ss_dssp HHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHeee
Confidence 4578899999999999874
No 8
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.70 E-value=23 Score=21.33 Aligned_cols=19 Identities=5% Similarity=0.139 Sum_probs=16.3
Q ss_pred hhHHHHHhhhCCChhHHHH
Q 016562 4 LEMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~ 22 (387)
...+.||..+|+++.+++.
T Consensus 26 ~~~~~LA~~l~l~~~~V~~ 44 (50)
T d1s7ea1 26 ELQITISQQLGLELSTVSN 44 (50)
T ss_dssp HHHHHHHTTSCSSSHHHHH
T ss_pred HHHHHHHHHHCcCHHHhhh
Confidence 4578999999999999874
No 9
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.12 E-value=30 Score=21.68 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=16.3
Q ss_pred hhHHHHHhhhCCChhHHHH
Q 016562 4 LEMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~ 22 (387)
...+.||..+|+++.|++.
T Consensus 30 ~~~~~LA~~lgls~~qV~~ 48 (59)
T d2cqxa1 30 KRLKGLSKQLDWSVRKIQC 48 (59)
T ss_dssp HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHH
Confidence 4678999999999999874
No 10
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.05 E-value=33 Score=21.30 Aligned_cols=19 Identities=11% Similarity=0.272 Sum_probs=16.0
Q ss_pred hhHHHHHhhhCCChhHHHH
Q 016562 4 LEMESMAGSIGVSVAVLRF 22 (387)
Q Consensus 4 ~~~~~~~~~~g~~~d~~~~ 22 (387)
..-+.||..+|+++.++..
T Consensus 28 ~~r~~LA~~l~l~~~~V~~ 46 (58)
T d1ig7a_ 28 AERAEFSSSLSLTETQVKI 46 (58)
T ss_dssp HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhCCChhheee
Confidence 4568899999999999864
Done!