BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016563
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 23/337 (6%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 167 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 213
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 273
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 334 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ L L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 334
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 23/337 (6%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 167 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 213
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 273
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 334 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ L L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 334
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 23/337 (6%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 167 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 213
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 273
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 334 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ L L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 334
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 23/337 (6%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWYGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 167 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 213
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 273
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 334 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ L L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 334
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 23/337 (6%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 167 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 213
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 273
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 334 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ L L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 334
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 23/337 (6%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 167 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 213
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 273
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 334 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ L L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 334
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 23/337 (6%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 167 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 213
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 273
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 334 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ L L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 334
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 181 bits (458), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 179/337 (53%), Gaps = 23/337 (6%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 167 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 213
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 273
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N ++ Y+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 334 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ L L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 334
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 179/337 (53%), Gaps = 23/337 (6%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 167 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 213
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 273
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N ++HY+ N+ ++ DGDLVL+ GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 334 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ L L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 334
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 179/337 (53%), Gaps = 23/337 (6%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 167 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 213
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 273
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N ++HY+ N+ ++ DGDLVL+D GCE GY +TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 334 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ L L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 334
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 24/338 (7%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 167 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 213
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 273
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 274 NAAVIHYSRND-QKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 332
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLES 297
Query: 333 NKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ L L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 298 LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 335
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 162/334 (48%), Gaps = 29/334 (8%)
Query: 57 YISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLS-- 114
+ R+RL+ LP+ S+ IL A + Y + + N+ Y+TG +P + L
Sbjct: 6 FAQNRERLVNTLPDESITILFAGQAPHXSADAHYKFVPNRNFYYVTGIDEPNVIFXLKKF 65
Query: 115 -HECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILP-DMIGRSSKL 172
+ +F+ ++ W G+ T ++A +S I++++ D ++
Sbjct: 66 GNSVEETLFIEKSDPVXEKWVGK---------TVSNEEAEKISGIKKVIYLDSFEKTXSN 116
Query: 173 FHNQETAVQTYTNLE------------AFQKADF----YGAVRNLSRLTHELRWVKSPAE 216
E Y +LE AF K + + N+ ELR K+ E
Sbjct: 117 IFFTENVKHLYLDLECREWKGTETKTLAFAKHVREQYPHVTIGNVYPNICELRVFKTDEE 176
Query: 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAA 276
+++++E+ ++ + + H+K+ E L A+F++ K G + AFN ++ G NA
Sbjct: 177 IEIIKEAIAVTKDGIYNVLKHAKADXXEYELEAQFDFTLKSSGIKHHAFNTILASGKNAT 236
Query: 277 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKEC 336
V+HY ND +I +GDLVL+D+G + Y +D++ T+P G+FSS ++ +Y+++L KE
Sbjct: 237 VLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNALKET 296
Query: 337 LELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
E+ PG ++ ++ +L +G K +G++ D
Sbjct: 297 TEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQED 330
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 152/325 (46%), Gaps = 20/325 (6%)
Query: 61 RKRLLEILPEN------SVAILAAAPE--KMMTDVVPYPYRQDANYLYITGCQQPGGVAV 112
R+RL E L +N S+ +L E + TD +RQ++ + + G +PG V
Sbjct: 28 RQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTDT-GVLFRQESFFHWAFGVTEPGCYGV 86
Query: 113 LSHECGL-CMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDM---IGR 168
+ + G +F+P A W G+I + E + D + +I +L +
Sbjct: 87 IDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDEIASVLTSQKPSVLL 146
Query: 169 SSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGC 228
+ + + +V + + K + + L E R K+ EL+++R + I
Sbjct: 147 TLRGVNTDSGSVCREASFDGISKFEVNNTI--LHPEIVECRVFKTDMELEVLRYTNKISS 204
Query: 229 QALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMA-FNPVVGGGPNAAVIHYSR----N 283
+A + M K E L + FE+ C RG R + + + G G N+AV+HY N
Sbjct: 205 EAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPN 264
Query: 284 DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPG 343
D+ I +GD+ L D+G E + + SD+T ++P G F++ ++A+Y+ +L++++ + PG
Sbjct: 265 DRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPG 324
Query: 344 TSLLQIHHYSVGMLRKGLKEIGIVN 368
+H + + + L +GI++
Sbjct: 325 VWWPDMHRLADRIHLEELAHMGILS 349
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 144/311 (46%), Gaps = 46/311 (14%)
Query: 60 RRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECG 118
R ++L++ + ENS+ + A P N Y +G GG ++
Sbjct: 4 RLEKLVKFMDENSIDRVFIAKP---------------VNVYYFSGTSPLGGGYIIVDGDE 48
Query: 119 LCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQET 178
+++PE E K + P+ K ++ D I ++ N ET
Sbjct: 49 ATLYVPELEY----------------EMAKEESKLPVVKFKKF--DEI---YEILKNTET 87
Query: 179 ----AVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQT 234
+Y+ +E F++ + + + +LR +K+ E++++ ++ I +A++
Sbjct: 88 LGIEGTLSYSMVENFKEKSNVKEFKKIDDVIKDLRIIKTKEEIEIIEKACEIADKAVMAA 147
Query: 235 MLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVL 294
+ E +AAK EY KM GA++ AF+ ++ G +A+ H +D++I+ GDLV+
Sbjct: 148 IEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGDLVV 207
Query: 295 MDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSV 354
+D+G + Y SD+TRT GS + + +Y+++L+ K +E PG + ++
Sbjct: 208 IDLGALYNHYNSDITRTI-VVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELD---- 262
Query: 355 GMLRKGLKEIG 365
+ R+ +KE G
Sbjct: 263 SIAREIIKEYG 273
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 137/287 (47%), Gaps = 38/287 (13%)
Query: 62 KRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLC 120
K+++E + +NS+ A+L A ++ N YI+G G +L
Sbjct: 9 KKIIEFMDKNSIDAVLIA---------------KNPNVYYISGASPLAGGYILITGESAT 53
Query: 121 MFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDM--IGRSSKLFHNQET 178
+++PE + I E FK M + + L + +G S L +
Sbjct: 54 LYVPELEYEMAKEESNIP-----VEKFK-----KMDEFYKALEGIKSLGIESSLPYGFIE 103
Query: 179 AVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHS 238
++ N++ F+K D + ++R +KS E+K++ ++ I +A++ +
Sbjct: 104 ELKKKANIKEFKKVD---------DVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEI 154
Query: 239 KSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVG 298
E +AAK EY KM GA++ AF+ ++ G +A+ H +D++I+ GDLV++D+G
Sbjct: 155 TEGKKEREVAAKVEYLMKMNGAEKPAFDTIIASGYRSALPHGVASDKRIERGDLVVIDLG 214
Query: 299 CELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTS 345
Y SD+TRT GS + ++ +Y+++L+ K+ +E PG +
Sbjct: 215 ALYQHYNSDITRTI-VVGSPNEKQKEIYEIVLEAQKKAVESAKPGIT 260
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 140 VDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVR 199
V+ P TF D P +K++EIL ++ ++ + K F +
Sbjct: 64 VNNFPATFWHDGENPYAKLREILEELGISKGRILIEDTMRADWLIGIMKLGKFTF----Q 119
Query: 200 NLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRG 259
LS L ELR +K E+K+M ++ I + + + E LA K E +
Sbjct: 120 PLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIREL- 178
Query: 260 AQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRT 311
+ +AF P+V G NAA H+ ++KI GD++++D G GY SD+TRT
Sbjct: 179 SDGIAFEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRT 230
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Query: 205 THELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMA 264
++R VK E++ ++++ I +A L+T+ ++ E +AA EY + GA+ +A
Sbjct: 127 VKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVA 186
Query: 265 FNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEA 324
F+ +V G +A+ H +D+ ++ GD++++D G Y +D+TR G S +
Sbjct: 187 FDTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVV-SIGEPSDEVKE 245
Query: 325 LYDLILQTNKECLELCMPGTS 345
++ ++L+ + L++ G +
Sbjct: 246 VHSIVLEAQERALKIAKAGVT 266
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 201 LSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR-G 259
+S + ELR +K E+K +++A I + + + E LA + EY K G
Sbjct: 140 ISPVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEGKSERELANRIEYMIKNEFG 199
Query: 260 AQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFS 319
A ++F P+V GPN A H+ + +KI GD+V+ D G + GY SD+TRT G S
Sbjct: 200 ADDVSFEPIVASGPNGANPHHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTV-VVGPPS 258
Query: 320 SLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK 359
+ +Y+++ + + ++ G + + G++ K
Sbjct: 259 EEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGIISK 298
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 202 SRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ 261
S L +LR +K+ +E+K+++E+A I A + + E ++ + E+ + +GA
Sbjct: 121 SGLVEKLRLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGAT 180
Query: 262 RMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 321
+F+ +V G +A+ H +++ I+ GD V +D G GY SD+TRT L
Sbjct: 181 SSSFDIIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKL 240
Query: 322 EEALYDLILQ 331
+E +Y+++L+
Sbjct: 241 KE-IYNIVLE 249
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 18/180 (10%)
Query: 200 NLSRLTHEL---RWVKSPAELKLMRES---ASIGCQALLQTMLHSKSHPYEGLLAAKFEY 253
N R+ H L R K+ EL MRE+ A G +A Q KS Y
Sbjct: 145 NPDRVLHYLHYQRAYKTDYELDCMREANKLAVAGHKAAEQAFREGKSE-----FDINLAY 199
Query: 254 ECKMR-GAQRMAFNPVVGGGPNAAVIHYSRNDQKI-DDGDLVLMDVGCELHGYVSDMTRT 311
R G + + +V +A+++HY + D + L+D G HGY +D+TRT
Sbjct: 200 AAASRQGDNDVPYTSIVALNEHASILHYMQXDTVAPKESRSFLIDAGANYHGYAADITRT 259
Query: 312 WPPCGSFSSLEEALYDLILQTNKECLELC---MPGTSLLQIHHYSVGMLRKGLKEIGIVN 368
+ G +S DLI +K L L PG + IH + + + L + G+VN
Sbjct: 260 YAQEGVHNS--AMFRDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVN 317
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 192 ADFYGAVRNLSR-LTHELRWVKSPAELK-LMRESASIGCQALLQTMLHSKSHPY------ 243
AD G + L+ + +LR VK AE+ L + A+I +H++ +
Sbjct: 130 ADALGVLPVLATDVLRQLRMVKEAAEVDALAKAGAAI-------DRVHARVPAFLVPGRT 182
Query: 244 EGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELH- 302
E +AA G +AF +VG GP+ A H+ +D+K+ GD+V++D+G
Sbjct: 183 EAQVAADIAEAIVAEGHSAVAFV-IVGSGPHGADPHHGYSDRKLQVGDIVVVDIGGTYEP 241
Query: 303 GYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQI 349
GY SD TRT+ G S Y + + + ++ PG + Q+
Sbjct: 242 GYYSDSTRTY-SIGDPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQV 287
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 16/119 (13%)
Query: 206 HELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKM-------R 258
H R K+ EL MRE+ I Q H + + K E+E +
Sbjct: 154 HYHRAYKTQYELACMREANKIAVQG------HKAAR--DAFFQGKSEFEIQQAYLLATQH 205
Query: 259 GAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDL-VLMDVGCELHGYVSDMTRTWPPCG 316
+ +V N A++HY+ D+ L+D G +GY +D+TRT+ G
Sbjct: 206 SENDNPYGNIVALNENCAILHYTHFDRVAPATHRSFLIDAGANFNGYAADITRTYDFTG 264
>pdb|1VS3|A Chain A, Crystal Structure Of The Trna Pseudouridine Synthase Trua
From Thermus Thermophilus Hb8
pdb|1VS3|B Chain B, Crystal Structure Of The Trna Pseudouridine Synthase Trua
From Thermus Thermophilus Hb8
Length = 249
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 138 AGVDAAPETFKAD--KAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFY 195
AGV A F D A P+ K+ E L ++ K+ +E A + +A +A Y
Sbjct: 53 AGVHALAMPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRY 112
Query: 196 GAVRNLSR------LTHELRWVKSPAELKLMRESASI 226
R L R L H WV+ P +L+ M E+ S+
Sbjct: 113 ---RILVRPHPSPLLRHRALWVRRPLDLEAMEEALSL 146
>pdb|2VAM|A Chain A, Ftsz B. Subtilis
pdb|2VXY|A Chain A, The Structure Of Ftsz From Bacillus Subtilis At 1.7a
Resolution
Length = 382
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 310 RTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEI----- 364
R G S+++EA+ LI+ N LE+ T +L+ + +LR+G++ I
Sbjct: 143 RQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIA 202
Query: 365 --GIVNSDGTD 373
G++N D D
Sbjct: 203 TPGLINLDFAD 213
>pdb|2RHH|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Bound
Sulfate Ion
pdb|2RHJ|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Two
Sulfate Ions And Sodium Ion In The Nucleotide Pocket
pdb|2RHL|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHL|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHO|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
pdb|2RHO|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
Length = 325
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 310 RTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEI----- 364
R G S+++EA+ LI+ N LE+ T +L+ + +LR+G++ I
Sbjct: 133 RQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIA 192
Query: 365 --GIVNSDGTD 373
G++N D D
Sbjct: 193 TPGLINLDFAD 203
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N V H ND+ + +GD+V +DV L G+ D +R + G + + L +
Sbjct: 76 NHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMY-YVGDVAIKPKRLIQVTYDAM 134
Query: 334 KECLELCMPGTSLLQI----------HHYSV 354
+ +E+ PG L I H+YSV
Sbjct: 135 MKGIEVVRPGAKLGDIGYAIQSYAEKHNYSV 165
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N V H ND+ + +GD+V +DV L G+ D +R + G + + L +
Sbjct: 76 NHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMY-YVGDVAIKPKRLIQVTYDAM 134
Query: 334 KECLELCMPGTSLLQI----------HHYSV 354
+ +E+ PG L I H+YSV
Sbjct: 135 MKGIEVVRPGAKLGDIGYAIQSYAEKHNYSV 165
>pdb|3CB5|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
pdb|3CB5|B Chain B, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
Length = 444
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 265 FNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTW--PPCGSFSSLE 322
+ P++ G + + + D + GD+VL +G Y S++ RT+ P S +
Sbjct: 253 YTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDP----DSEQ 308
Query: 323 EALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLR 358
+ Y ++ K+ E C G + I+ +G++R
Sbjct: 309 QKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIR 344
>pdb|3CB6|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (Form B)
Length = 444
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 265 FNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTW--PPCGSFSSLE 322
+ P++ G + + + D + GD+VL +G Y S++ RT+ P S +
Sbjct: 253 YTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDP----DSEQ 308
Query: 323 EALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLR 358
+ Y ++ K+ E C G + I+ +G++R
Sbjct: 309 QKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIR 344
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 212 KSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGG 271
++P EL M + SI AL+ +K+ G+ + + + + A +G
Sbjct: 35 RTPGELDAMAAAGSIVGAALVAVRDAAKA----GVSTLELDQVAESVIREAGAVPSFLGY 90
Query: 272 GPNAAVIHYSRNDQKID----------DGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 321
A I S NDQ + DGDLV +D G L G+ D T+ G+
Sbjct: 91 HGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTF-AVGTVIPS 149
Query: 322 EEALYDLILQTNKECLELCMPGTSLLQIHH 351
+EAL + + + + +PG L + H
Sbjct: 150 DEALSEATRLSMEAGIAAMIPGNRLTDVSH 179
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 14/149 (9%)
Query: 210 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVV 269
WV++P ++ MR + I AL + + G+ + + A+ +
Sbjct: 46 WVQTPEVIEKMRVAGRIAAGALAE----AGKAVAPGVTTDELDRIAHEYLVDNGAYPSTL 101
Query: 270 G--GGP-------NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSS 320
G G P N + H + I DGD+V +DV + G D T+ P G +
Sbjct: 102 GYKGFPKSCSTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATF-PAGDVAD 160
Query: 321 LEEALYDLILQTNKECLELCMPGTSLLQI 349
L D + + PG +L I
Sbjct: 161 EHRLLVDRTREATMRAINTVKPGRALSVI 189
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 14/149 (9%)
Query: 210 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVV 269
WV++P ++ MR + I AL + + G+ + + A+ +
Sbjct: 46 WVQTPEVIEKMRVAGRIAAGALAE----AGKAVAPGVTTDELDRIAHEYLVDNGAYPSTL 101
Query: 270 G--GGP-------NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSS 320
G G P N + H + I DGD+V +DV + G D T+ P G +
Sbjct: 102 GYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATF-PAGDVAD 160
Query: 321 LEEALYDLILQTNKECLELCMPGTSLLQI 349
L D + + PG +L I
Sbjct: 161 EHRLLVDRTREATMRAINTVKPGRALSVI 189
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 14/149 (9%)
Query: 210 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVV 269
WV++P ++ MR + I AL + + G+ + + A+ +
Sbjct: 40 WVQTPEVIEKMRVAGRIAAGALAE----AGKAVAPGVTTDELDRIAHEYLVDNGAYPSTL 95
Query: 270 G--GGP-------NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSS 320
G G P N + H + I DGD+V +DV + G D T+ P G +
Sbjct: 96 GYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATF-PAGDVAD 154
Query: 321 LEEALYDLILQTNKECLELCMPGTSLLQI 349
L D + + PG +L I
Sbjct: 155 EHRLLVDRTREATMRAINTVKPGRALSVI 183
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 14/149 (9%)
Query: 210 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVV 269
WV++P ++ MR + I AL + + G+ + + A+ +
Sbjct: 43 WVQTPEVIEKMRVAGRIAAGALAE----AGKAVAPGVTTDELDRIAHEYLVDNGAYPSTL 98
Query: 270 G--GGP-------NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSS 320
G G P N + H + I DGD+V +DV + G D T+ P G +
Sbjct: 99 GYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATF-PAGDVAD 157
Query: 321 LEEALYDLILQTNKECLELCMPGTSLLQI 349
L D + + PG +L I
Sbjct: 158 EHRLLVDRTREATMRAINTVKPGRALSVI 186
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 274 NAAVIHYS--RNDQK--IDDGDLVLMDVGCELHGYVSDMTRTW 312
N V H+S ++DQ + +GDLV +D+G + G+++++ T+
Sbjct: 76 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTF 118
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 245 GLLAAKFE-YECKMRGAQRMAFNPVVGGGPN--AAVIHYSRNDQKIDDGDLVLMDVGCEL 301
G++ +F CK Q++ F+ G PN A ++ Y DDGD+VLM++ +L
Sbjct: 129 GIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYV-----ADDGDIVLMEIQDKL 183
Query: 302 HGYVSDMTRTW 312
M +W
Sbjct: 184 SAEWKPMKLSW 194
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 274 NAAVIHYS--RNDQK--IDDGDLVLMDVGCELHGYVSDMTRTW 312
N V H+S ++DQ + +GDLV +D+G + G+++++ T+
Sbjct: 90 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTF 132
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 274 NAAVIHYS--RNDQK--IDDGDLVLMDVGCELHGYVSDMTRTW 312
N V H+S ++DQ + +GDLV +D+G + G+++++ T+
Sbjct: 83 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTF 125
>pdb|1V0D|A Chain A, Crystal Structure Of Caspase-Activated Dnase (Cad)
Length = 329
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 288 DDGDLVLMDVGCELHGYVSDMTR 310
+D +L+L+ G HGYVSD+TR
Sbjct: 68 NDAELLLLTAGETWHGYVSDITR 90
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 263 MAFNPVVGGGPNAAVIHYS---RNDQKIDDGDLVLMDVGCELHGYVSDMTRT 311
++F + GP A+IHY+ ++ + ++ L+D G + +D+TRT
Sbjct: 379 LSFPTISSTGPTGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRT 430
>pdb|2GX5|A Chain A, N-terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
pdb|2GX5|B Chain B, N-terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
pdb|2GX5|C Chain C, N-terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
pdb|2GX5|D Chain D, N-terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
Length = 170
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 267 PVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHG 303
P++GGG + SR + +D DL+L + G + G
Sbjct: 125 PIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVG 161
>pdb|2B18|A Chain A, N-Terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
Length = 164
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 267 PVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHG 303
P++GGG + SR + +D DL+L + G + G
Sbjct: 124 PIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVG 160
>pdb|2HGV|A Chain A, N-Terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
Length = 164
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 267 PVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHG 303
P++GGG + SR + +D DL+L + G + G
Sbjct: 124 PIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVG 160
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N V H + + I +GDLV +DV +GY +D ++ S +++ + D+
Sbjct: 71 NEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAF 130
Query: 334 KECLELCMPGTSLLQI 349
+ + PGT L I
Sbjct: 131 ENAIAKVKPGTKLSNI 146
>pdb|1VFG|A Chain A, Crystal Structure Of Trna Nucleotidyltransferase Complexed
With A Primer Trna And An Incoming Atp Analog
pdb|1VFG|B Chain B, Crystal Structure Of Trna Nucleotidyltransferase Complexed
With A Primer Trna And An Incoming Atp Analog
Length = 390
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 127 SAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNL 186
+AH I K ++ A ET+ AYP + + D+I R + A+ NL
Sbjct: 63 TAHLKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTI-----NAMAISVNL 117
Query: 187 EAFQK-ADFYGAVRNLS----RLTHELRWVKSPAEL 217
E + D++G +R+L R+ H + +++ P +
Sbjct: 118 EDYGTLIDYFGGLRDLKDKVIRVLHPVSFIEDPVRI 153
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 37 ASHPQLMKEGEITPGISAEEYISRRK---RLLEILPENSVAILAAAPEKMMTDVVPYP-- 91
A H ++ G G+ A Y+ R R ++ LPE + A PEK + DV +P
Sbjct: 3 ADHTDVLIVGAGPTGLFAGFYVGXRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKV 62
Query: 92 YRQD 95
Y +D
Sbjct: 63 YAKD 66
>pdb|2AQA|A Chain A, Nmr Structural Analysis Of Nop10p From Saccharomyces
Cerevisiae
Length = 63
Score = 28.5 bits (62), Expect = 7.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 18 NGRRAYSTKKFVDSGQPTPASHP 40
+G+R Y+ KK +SG+ T ++HP
Sbjct: 9 DGKRIYTLKKVTESGEITKSAHP 31
>pdb|1Y2Y|A Chain A, Structural Characterization Of Nop10p Using Nuclear
Magnetic Resonance Spectroscopy
pdb|3U28|B Chain B, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|B Chain B, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 58
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 18 NGRRAYSTKKFVDSGQPTPASHP 40
+G+R Y+ KK +SG+ T ++HP
Sbjct: 10 DGKRIYTLKKVTESGEITKSAHP 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,851,306
Number of Sequences: 62578
Number of extensions: 475424
Number of successful extensions: 1058
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 994
Number of HSP's gapped (non-prelim): 50
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)