Query 016563
Match_columns 387
No_of_seqs 270 out of 2005
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:58:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2414 Putative Xaa-Pro amino 100.0 1.8E-86 3.9E-91 616.1 31.2 359 28-387 38-408 (488)
2 PRK10879 proline aminopeptidas 100.0 8.4E-68 1.8E-72 526.2 38.9 336 52-387 1-354 (438)
3 COG0006 PepP Xaa-Pro aminopept 100.0 7E-53 1.5E-57 414.9 30.0 305 52-387 5-316 (384)
4 PRK13607 proline dipeptidase; 100.0 1.6E-51 3.5E-56 408.6 33.6 316 56-387 14-341 (443)
5 TIGR02993 ectoine_eutD ectoine 100.0 5.4E-52 1.2E-56 408.6 29.6 291 51-359 5-309 (391)
6 KOG2737 Putative metallopeptid 100.0 1.9E-52 4.2E-57 385.1 21.5 332 52-387 12-371 (492)
7 PRK09795 aminopeptidase; Provi 100.0 2.5E-49 5.4E-54 386.5 29.5 286 59-387 2-294 (361)
8 PRK14575 putative peptidase; P 100.0 3.6E-48 7.9E-53 382.7 30.2 282 60-360 12-325 (406)
9 PRK14576 putative endopeptidas 100.0 4.9E-46 1.1E-50 367.4 32.0 284 57-359 9-323 (405)
10 PRK15173 peptidase; Provisiona 100.0 1E-40 2.2E-45 319.9 26.8 199 157-359 43-241 (323)
11 PRK12897 methionine aminopepti 100.0 8.5E-37 1.9E-41 283.2 19.8 150 210-360 3-157 (248)
12 PRK07281 methionine aminopepti 100.0 9.6E-36 2.1E-40 279.5 19.8 150 209-359 2-187 (286)
13 PRK12318 methionine aminopepti 100.0 2E-35 4.3E-40 278.9 20.1 158 201-359 32-197 (291)
14 TIGR00500 met_pdase_I methioni 100.0 6E-35 1.3E-39 270.8 20.8 166 210-386 2-172 (247)
15 cd01087 Prolidase Prolidase. E 100.0 8.6E-35 1.9E-39 269.2 20.3 170 217-387 1-175 (243)
16 cd01090 Creatinase Creatine am 100.0 3.3E-34 7.2E-39 262.2 19.6 157 217-387 1-163 (228)
17 PRK12896 methionine aminopepti 100.0 1.1E-33 2.3E-38 263.7 20.0 153 207-360 6-163 (255)
18 PRK05716 methionine aminopepti 100.0 1.6E-33 3.5E-38 262.1 20.7 167 209-386 3-174 (252)
19 PLN03158 methionine aminopepti 100.0 5.5E-33 1.2E-37 270.4 20.4 171 205-386 131-306 (396)
20 cd01092 APP-like Similar to Pr 100.0 1.9E-32 4.1E-37 247.4 19.7 157 217-387 1-157 (208)
21 PF00557 Peptidase_M24: Metall 100.0 6.5E-31 1.4E-35 237.3 16.7 155 218-387 1-156 (207)
22 cd01091 CDC68-like Related to 100.0 8.6E-31 1.9E-35 241.3 16.9 158 217-387 1-175 (243)
23 cd01086 MetAP1 Methionine Amin 100.0 3.4E-30 7.3E-35 237.7 19.8 159 217-386 1-164 (238)
24 cd01089 PA2G4-like Related to 100.0 7.3E-30 1.6E-34 233.8 18.4 157 217-386 1-176 (228)
25 cd01066 APP_MetAP A family inc 100.0 3.7E-29 8.1E-34 224.7 18.9 156 217-387 1-156 (207)
26 cd01085 APP X-Prolyl Aminopept 100.0 9.2E-29 2E-33 225.3 19.0 153 218-387 5-164 (224)
27 TIGR00495 crvDNA_42K 42K curve 100.0 2.1E-27 4.5E-32 231.9 20.9 166 209-387 11-195 (389)
28 PTZ00053 methionine aminopepti 100.0 2.4E-27 5.2E-32 232.8 20.0 144 210-359 151-302 (470)
29 TIGR00501 met_pdase_II methion 100.0 2.5E-27 5.5E-32 224.3 19.3 139 214-359 2-143 (295)
30 PRK08671 methionine aminopepti 99.9 8E-27 1.7E-31 220.7 19.4 153 216-385 1-156 (291)
31 cd01088 MetAP2 Methionine Amin 99.9 5.3E-26 1.2E-30 215.1 18.4 152 217-385 1-155 (291)
32 KOG2413 Xaa-Pro aminopeptidase 99.9 3.2E-24 6.8E-29 210.3 18.8 297 29-360 150-467 (606)
33 COG0024 Map Methionine aminope 99.9 1.3E-22 2.8E-27 184.6 19.7 164 211-385 5-175 (255)
34 PF05195 AMP_N: Aminopeptidase 99.9 2E-24 4.3E-29 180.7 6.9 126 52-177 1-128 (134)
35 KOG2738 Putative methionine am 99.9 1.6E-22 3.4E-27 182.2 16.6 165 210-385 115-284 (369)
36 KOG1189 Global transcriptional 99.9 7.2E-22 1.6E-26 196.3 18.2 254 97-360 19-297 (960)
37 COG5406 Nucleosome binding fac 99.8 1.7E-17 3.7E-22 162.3 16.5 295 52-364 6-342 (1001)
38 PF01321 Creatinase_N: Creatin 99.3 6.6E-13 1.4E-17 110.5 4.6 127 60-211 1-132 (132)
39 KOG2776 Metallopeptidase [Gene 99.2 4.1E-10 8.9E-15 105.0 14.1 148 210-359 14-179 (398)
40 KOG2775 Metallopeptidase [Gene 99.1 3.7E-09 8.1E-14 96.3 14.4 165 214-386 82-255 (397)
41 PF14826 FACT-Spt16_Nlob: FACT 97.3 0.00022 4.8E-09 61.6 4.1 146 52-204 1-162 (163)
42 cd01066 APP_MetAP A family inc 94.8 0.43 9.3E-06 42.0 11.3 95 218-314 102-202 (207)
43 KOG2413 Xaa-Pro aminopeptidase 94.4 0.074 1.6E-06 54.0 5.8 114 60-190 11-129 (606)
44 PRK05716 methionine aminopepti 92.9 1.1 2.5E-05 41.2 10.7 95 220-314 120-238 (252)
45 PRK08671 methionine aminopepti 92.9 0.85 1.8E-05 43.3 9.9 91 220-314 103-204 (291)
46 TIGR00500 met_pdase_I methioni 92.8 1.3 2.8E-05 40.7 10.9 93 220-314 118-236 (247)
47 cd01092 APP-like Similar to Pr 92.6 1.8 3.8E-05 38.4 11.2 93 219-314 104-203 (208)
48 cd01090 Creatinase Creatine am 92.3 1.8 3.8E-05 39.5 10.9 92 220-314 111-218 (228)
49 PLN03158 methionine aminopepti 91.6 1.8 3.9E-05 42.9 10.7 81 220-301 252-339 (396)
50 cd01086 MetAP1 Methionine Amin 91.6 2.5 5.5E-05 38.5 11.2 78 220-301 110-197 (238)
51 cd01088 MetAP2 Methionine Amin 91.5 2.2 4.8E-05 40.4 11.0 91 220-314 102-203 (291)
52 PRK12896 methionine aminopepti 91.3 2 4.3E-05 39.6 10.3 93 220-314 125-244 (255)
53 COG0024 Map Methionine aminope 90.6 2.4 5.3E-05 39.2 9.9 95 218-313 120-223 (255)
54 cd01091 CDC68-like Related to 90.5 2 4.4E-05 39.6 9.4 95 219-314 120-232 (243)
55 TIGR00501 met_pdase_II methion 90.2 1.6 3.6E-05 41.4 8.8 90 221-312 107-205 (295)
56 PRK12897 methionine aminopepti 90.0 2.5 5.3E-05 39.0 9.6 93 220-314 119-237 (248)
57 PF00557 Peptidase_M24: Metall 89.8 4.4 9.5E-05 35.9 10.8 95 220-314 104-205 (207)
58 PRK12318 methionine aminopepti 89.6 3.5 7.6E-05 39.1 10.5 83 219-301 159-246 (291)
59 cd01089 PA2G4-like Related to 89.2 3.9 8.4E-05 37.2 10.1 91 219-314 121-218 (228)
60 TIGR00495 crvDNA_42K 42K curve 88.1 3.7 8E-05 40.7 9.8 93 220-312 140-246 (389)
61 TIGR02993 ectoine_eutD ectoine 87.4 5.2 0.00011 39.6 10.5 95 219-314 271-372 (391)
62 PTZ00053 methionine aminopepti 87.3 4.7 0.0001 40.8 10.0 95 219-313 264-374 (470)
63 PRK09795 aminopeptidase; Provi 86.6 5.8 0.00012 38.8 10.2 99 213-314 235-340 (361)
64 PRK07281 methionine aminopepti 86.3 6.3 0.00014 37.3 9.9 80 220-301 150-237 (286)
65 KOG2738 Putative methionine am 86.1 2.4 5.2E-05 39.7 6.6 41 320-360 123-163 (369)
66 PRK15173 peptidase; Provisiona 83.5 13 0.00028 35.8 10.9 94 219-314 203-304 (323)
67 PRK14576 putative endopeptidas 81.1 18 0.00039 36.0 11.2 94 219-314 285-386 (405)
68 cd01087 Prolidase Prolidase. E 80.9 17 0.00037 33.2 10.2 96 219-314 104-233 (243)
69 PRK14575 putative peptidase; P 80.8 19 0.00041 35.9 11.2 95 219-314 286-387 (406)
70 COG0006 PepP Xaa-Pro aminopept 78.0 22 0.00049 34.9 10.7 93 220-314 264-365 (384)
71 PRK05728 DNA polymerase III su 56.5 73 0.0016 26.6 7.9 103 219-325 14-119 (142)
72 KOG2775 Metallopeptidase [Gene 53.3 59 0.0013 30.8 7.3 38 321-358 87-124 (397)
73 cd01085 APP X-Prolyl Aminopept 50.8 1.9E+02 0.0041 26.1 11.4 85 228-314 121-214 (224)
74 PRK10879 proline aminopeptidas 47.0 1.8E+02 0.0038 29.3 10.4 95 220-314 284-409 (438)
75 PF05184 SapB_1: Saposin-like 38.5 62 0.0013 20.0 3.7 33 224-256 4-36 (39)
76 PF09851 SHOCT: Short C-termin 37.4 30 0.00066 20.7 1.9 14 52-65 17-30 (31)
77 COG5406 Nucleosome binding fac 35.2 1.4E+02 0.003 31.4 7.3 68 231-298 311-384 (1001)
78 PRK13607 proline dipeptidase; 33.6 2.7E+02 0.0058 28.1 9.2 40 222-261 272-315 (443)
79 KOG3430 Dynein light chain typ 33.2 87 0.0019 24.0 4.2 37 345-387 35-75 (90)
80 COG3642 Mn2+-dependent serine/ 27.5 2E+02 0.0043 25.7 6.1 18 282-299 120-137 (204)
81 COG2944 Predicted transcriptio 26.1 96 0.0021 24.5 3.5 32 212-248 44-75 (104)
82 PRK06646 DNA polymerase III su 24.0 4.5E+02 0.0097 22.3 7.7 92 219-314 14-115 (154)
83 KOG1189 Global transcriptional 23.7 4.1E+02 0.0089 28.8 8.4 95 219-314 258-366 (960)
84 COG3848 Phosphohistidine swive 23.1 66 0.0014 25.4 2.1 23 284-306 85-109 (111)
85 KOG2776 Metallopeptidase [Gene 22.4 1.9E+02 0.0041 28.2 5.4 39 323-361 25-63 (398)
86 PF02877 PARP_reg: Poly(ADP-ri 22.4 1.9E+02 0.0041 23.8 4.9 42 312-357 35-76 (133)
87 COG4465 CodY Pleiotropic trans 21.6 22 0.00047 31.9 -1.0 38 264-301 116-153 (261)
88 PTZ00449 104 kDa microneme/rho 20.8 3.4E+02 0.0075 28.0 7.0 33 41-73 117-149 (943)
89 PF07308 DUF1456: Protein of u 20.8 1.7E+02 0.0037 21.2 3.7 37 217-253 5-41 (68)
90 PF00249 Myb_DNA-binding: Myb- 20.5 1.9E+02 0.004 18.8 3.7 41 212-252 4-45 (48)
91 PF12368 DUF3650: Protein of u 20.4 70 0.0015 18.9 1.3 14 51-64 15-28 (28)
92 COG5435 Uncharacterized conser 20.2 5.3E+02 0.012 21.8 8.0 17 315-331 121-137 (147)
No 1
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-86 Score=616.09 Aligned_cols=359 Identities=43% Similarity=0.777 Sum_probs=326.8
Q ss_pred cccCCCCCCCCCCcCccCCCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEecCCcccccCCcCCCccCCCceeeecCCCCC
Q 016563 28 FVDSGQPTPASHPQLMKEGEITPGISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQP 107 (387)
Q Consensus 28 ~~~~~qp~~~t~p~~~~~~~~tp~i~~~ey~~R~~~L~~~m~~~~l~il~~~~~~~~~~d~~y~f~q~~n~~YlTG~~~p 107 (387)
..+.|||++.|||||++|||+||||++.||+.||.||++.++++.++|+.+++++||+|++||+|||++||+||||+.+|
T Consensus 38 ~~~~GQpt~~thPhli~pgEltPgis~~Ey~~RR~rl~~ll~~~a~~il~sap~~~msg~ipY~f~Qd~df~YLtGc~EP 117 (488)
T KOG2414|consen 38 KGNLGQPTSVTHPHLIQPGELTPGISATEYKERRSRLMSLLPANAMVILGSAPVKYMSGAIPYTFRQDNDFYYLTGCLEP 117 (488)
T ss_pred ccccCCCCCCCCccccCCCCcCCCccHHHHHHHHHHHHHhCCcccEEEEccCchhhhcCccceeeecCCCeEEEeccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEec-C---CeEEEEecCCCCccccccCccCChhhhhhHhCCccccchhhHHHHHHHhhcCCCeEEEcCCcchhhh
Q 016563 108 GGVAVLSH-E---CGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTY 183 (387)
Q Consensus 108 ~~~lvi~~-~---~~~~l~v~~~~~~~~~w~~~~~~~~~~~~~~~~d~~~~~~~l~~~L~~~~~~~~~I~~d~~~~~~~~ 183 (387)
++++++.+ | ....+|+|++++..+.|+|+|.|.+++..+|++|+..+.+.+..+|.+.......|+.|..+.. ..
T Consensus 118 ~~vl~l~~~d~~s~~~~lf~p~kdP~~e~WeG~rtG~~~a~~if~v~ea~~~s~l~~~L~k~~~~~~~i~~d~~ss~-a~ 196 (488)
T KOG2414|consen 118 DAVLLLLKGDERSVAYDLFMPPKDPTAELWEGPRTGTDGASEIFGVDEAYPLSGLAVFLPKMSALLYKIWQDKASSK-AS 196 (488)
T ss_pred CeeEEEeecccccceeeEecCCCCccHHhhcCccccchhhhhhhcchhhcchhhHHHHHHHHHhhhhhhhhhhccch-hh
Confidence 99999974 1 2478999999999999999999999999999999999999999999988766667887764322 12
Q ss_pred hHHHH---HHhhc-cCCceechHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC
Q 016563 184 TNLEA---FQKAD-FYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRG 259 (387)
Q Consensus 184 ~~~~~---l~~~~-~~~~~~~~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G 259 (387)
..++. |.... ...++++++.+++++|.||||+|+++||+||.|+++++...|-.-|++.+|..|.+.++|+++.+|
T Consensus 197 s~~~~~~dl~~~~~~~~~~~~~~~li~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~~sr~~~~E~~l~a~~eye~r~rG 276 (488)
T KOG2414|consen 197 SALKNMQDLLGFQSKSSTVRPVSNLIERLRLIKSPAELELMREACNIASQTFSETMFGSRDFHNEAALSALLEYECRRRG 276 (488)
T ss_pred hHHHHHHhhhhhcccCcccccHHHHHHHHHccCCHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhhHhhhhhhheeecC
Confidence 22333 33222 123589999999999999999999999999999999999998888999999999999999999999
Q ss_pred CCCCCCcceEecCCCCccccccCCCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 016563 260 AQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLEL 339 (387)
Q Consensus 260 ~~~~~~~~ivasG~~a~~~H~~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~ 339 (387)
|+..+|+||||+|.|+.++||+.||+.+++||+||+|+||+++||+||||||||++|+||+.|+++|++++++|+.||..
T Consensus 277 ad~~AYpPVVAgG~na~tIHY~~Nnq~l~d~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~ 356 (488)
T KOG2414|consen 277 ADRLAYPPVVAGGKNANTIHYVRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKY 356 (488)
T ss_pred ccccccCCeeecCcccceEEEeecccccCCCcEEEEecCcccCceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC--CCCHHHHHHHHHHHHHHHHHhcCccCCCCCC--ccccccccCCCCCC
Q 016563 340 CMP--GTSLLQIHHYSVGMLRKGLKEIGIVNSDGTD--PYNELNPTSIGDNY 387 (387)
Q Consensus 340 ~kp--G~~~~di~~~~~~~l~~~l~~~g~~~~~~~~--~~~~~~~H~iGH~l 387 (387)
|+| |.++++||..+.+.+.++|+++|+.+...+. ...+++|||+||+|
T Consensus 357 c~~~~g~sL~~l~~~s~~Ll~~~Lk~lGI~kt~~ee~~~~~klcPHhVgHyL 408 (488)
T KOG2414|consen 357 CKPSNGTSLSQLFERSNELLGQELKELGIRKTDREEMIQAEKLCPHHVGHYL 408 (488)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHhCcccchHHHHHhhhhcCCcccchhc
Confidence 999 9999999999999999999999986654210 34789999999996
No 2
>PRK10879 proline aminopeptidase P II; Provisional
Probab=100.00 E-value=8.4e-68 Score=526.19 Aligned_cols=336 Identities=30% Similarity=0.550 Sum_probs=302.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecCCcccccCCcCCCccCCCceeeecCCCCCCeEEEEecCC----eEEEEecCCC
Q 016563 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHEC----GLCMFMPETS 127 (387)
Q Consensus 52 i~~~ey~~R~~~L~~~m~~~~l~il~~~~~~~~~~d~~y~f~q~~n~~YlTG~~~p~~~lvi~~~~----~~~l~v~~~~ 127 (387)
++.++|.+||++|.+.|++++++|+.+++.+++++|++|+|||++||+||||+++|++++|+.+++ +.+||+|++|
T Consensus 1 ~~~~~~~~rR~~l~~~~~~~~~~v~~~~~~~~~~~d~~y~Frq~s~F~YltG~~ep~~~lv~~~~~~~~~~~~Lf~~~~d 80 (438)
T PRK10879 1 MTQQEFQRRRQALLAKMQPGSAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRD 80 (438)
T ss_pred CChHHHHHHHHHHHhhCCCCcEEEEeCCCccccCCCCCCCccCCCceeeeeCCCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 467899999999999999999999999999999999999999999999999999999998885532 4799999999
Q ss_pred CccccccCccCChhhhhhHhCCccccchhhHHHHHHHhhcCCCeEEEcCCcc----hhhhhHHHHHHhh-----ccCCce
Q 016563 128 AHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETA----VQTYTNLEAFQKA-----DFYGAV 198 (387)
Q Consensus 128 ~~~~~w~~~~~~~~~~~~~~~~d~~~~~~~l~~~L~~~~~~~~~I~~d~~~~----~~~~~~~~~l~~~-----~~~~~~ 198 (387)
+..++|+|++.+.+.+...+++|+..+++++.+.|.+++.+...++.+.... ......++.+... .+..++
T Consensus 81 ~~~e~W~G~~~~~~~a~~~~g~d~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (438)
T PRK10879 81 LTAEIWFGRRLGQDAAPEKLGVDRALPFSEINQQLYQLLNGLDVVYHAQGEYAYADEIVFSALEKLRKGSRQNLTAPATL 160 (438)
T ss_pred CCccEEcCcCCCHHHHHHHhCCCEEeeHHHHHHHHHHHhcCCceEEecCCccccchhHHHHHHHHHHhhhccccCCcccc
Confidence 9999999999999999999999999999999999999887766788775421 1112223333322 123568
Q ss_pred echHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccc
Q 016563 199 RNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVI 278 (387)
Q Consensus 199 ~~~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~ 278 (387)
+|+.+++.++|+|||++||+.||+|+++++.++.++++.++||+||.||++.+++.+.++|+..++|+++|++|.|++.+
T Consensus 161 ~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~~~~~~~iv~~G~na~~~ 240 (438)
T PRK10879 161 TDWRPWVHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYPSYNTIVGSGENGCIL 240 (438)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCCCCCCCcEEEEcCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred cccCCCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016563 279 HYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLR 358 (387)
Q Consensus 279 H~~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~ 358 (387)
||.|+++.|++||+|++|+|++|+||++|+||||+|+|+||++|+++|++++++|+++++++|||++++|||.++.+++.
T Consensus 241 H~~~~~~~l~~GDlVliD~G~~~~GY~sDitRT~~v~G~~s~~q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~ 320 (438)
T PRK10879 241 HYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMV 320 (438)
T ss_pred cCCCCccccCCCCEEEEEeCeEECCEEEEeEEEEEECCcCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCC-----CccccccccCCCCCC
Q 016563 359 KGLKEIGIVNSDGT-----DPYNELNPTSIGDNY 387 (387)
Q Consensus 359 ~~l~~~g~~~~~~~-----~~~~~~~~H~iGH~l 387 (387)
+.|.++|+.++..+ .+++.||+|++||+|
T Consensus 321 ~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~i 354 (438)
T PRK10879 321 SGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWL 354 (438)
T ss_pred HHHHHhCCcCCCHHHHHHhccCccccCCCCcccc
Confidence 99999999764311 157899999999986
No 3
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-53 Score=414.90 Aligned_cols=305 Identities=27% Similarity=0.404 Sum_probs=257.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCeE-EEEecCCcccccCCcCCCccCCCceeeecCCCCC----CeEEEEecCCeEEEEecCC
Q 016563 52 ISAEEYISRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQP----GGVAVLSHECGLCMFMPET 126 (387)
Q Consensus 52 i~~~ey~~R~~~L~~~m~~~~l-~il~~~~~~~~~~d~~y~f~q~~n~~YlTG~~~p----~~~lvi~~~~~~~l~v~~~ 126 (387)
++..++..|+.+++..|.++++ ++++.+ ++|++|||||..+ ...++++.+++++||++..
T Consensus 5 ~~~~~~~~rl~~~~~~~~~~~~~~~~~~~---------------~~n~~yltg~~~~~~~~~~~~~~~~~~~~~l~~~~~ 69 (384)
T COG0006 5 FADEEYRARLARLRELMEEAGLDALLLTS---------------PSNFYYLTGFDAFGFERLQALLVPAEGEPVLFVRGR 69 (384)
T ss_pred cchHHHHHHHHHHHHHHHHcCCcEEEecC---------------CCceEEEeCCCCCcccceEEEEEcCCCceEEEEcch
Confidence 4567899999999999999999 555543 7999999999852 2356677777899999998
Q ss_pred CCccccccCccCChhhhhhHhCCcccc--chhhHHHHHHHhhcCCCeEEEcCCcchhhhhHHHHHHhhccCCceechHHH
Q 016563 127 SAHDVIWKGQIAGVDAAPETFKADKAY--PMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRL 204 (387)
Q Consensus 127 ~~~~~~w~~~~~~~~~~~~~~~~d~~~--~~~~l~~~L~~~~~~~~~I~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 204 (387)
+.....|...... .. ...+..+... +.+.+.+.+.+.......++++......++..+..+...++..+++++++.
T Consensus 70 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 147 (384)
T COG0006 70 DEEAAKETSWIKL-EN-VEVYEDDEDPAAPLDLLGALLEELGLAGKRIGIESASIFLTLAAFERLQAALPRAELVDASDL 147 (384)
T ss_pred hHHHHHhhccccc-Cc-eEEEecCCccccHHHHHHHHHHhccccccceEEEeccCccCHHHHHHHHhhCCCCEEeccHHH
Confidence 8655444432211 00 1111111111 334566666665444567888876444566677888888887789999999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccccCCC
Q 016563 205 THELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRND 284 (387)
Q Consensus 205 i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~~~~~ 284 (387)
+.++|+|||+.||+.||+|+++++.++.++++.+++|+||.||++.+++.+.+.|++.++|.+||++|+|++.|||.+++
T Consensus 148 i~~lR~iKs~~EI~~ir~A~~i~~~a~~~~~~~~~~g~tE~ev~a~l~~~~~~~G~~~~sf~~iv~~G~n~a~pH~~~~~ 227 (384)
T COG0006 148 VDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGPSFDTIVASGENAALPHYTPSD 227 (384)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCCccCcCcEEeccccccCcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhc
Q 016563 285 QKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEI 364 (387)
Q Consensus 285 ~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~ 364 (387)
+.+++||+|++|+|+.|+||||||||||++ |+||++|+++|++|+++|+++++++|||++++|||.++++.+++.
T Consensus 228 ~~~~~gd~vliD~G~~~~gY~sDiTRT~~~-G~~~~~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~~---- 302 (384)
T COG0006 228 RKLRDGDLVLIDLGGVYNGYCSDITRTFPI-GKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKA---- 302 (384)
T ss_pred ccccCCCEEEEEeeeEECCccccceeEEec-CCCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhc----
Confidence 999999999999999999999999999998 899999999999999999999999999999999999999999984
Q ss_pred CccCCCCCCccccccccCCCCCC
Q 016563 365 GIVNSDGTDPYNELNPTSIGDNY 387 (387)
Q Consensus 365 g~~~~~~~~~~~~~~~H~iGH~l 387 (387)
+++.+|.|++||++
T Consensus 303 ---------g~~~~~~h~~GHgv 316 (384)
T COG0006 303 ---------GYGLYFLHGTGHGV 316 (384)
T ss_pred ---------CCcccccCCccccC
Confidence 67889999999986
No 4
>PRK13607 proline dipeptidase; Provisional
Probab=100.00 E-value=1.6e-51 Score=408.58 Aligned_cols=316 Identities=17% Similarity=0.215 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHhCCCCeEEEEecC-CcccccCCcCCCccCCCceeeecCCC-CCCeEEEEecC-C-eEEEEecCCCCccc
Q 016563 56 EYISRRKRLLEILPENSVAILAAA-PEKMMTDVVPYPYRQDANYLYITGCQ-QPGGVAVLSHE-C-GLCMFMPETSAHDV 131 (387)
Q Consensus 56 ey~~R~~~L~~~m~~~~l~il~~~-~~~~~~~d~~y~f~q~~n~~YlTG~~-~p~~~lvi~~~-~-~~~l~v~~~~~~~~ 131 (387)
.|.+|++++.......+ .++.++ +.....+|..|+|||+++|+||||+. +|+++++|..+ + +.+||.| .|
T Consensus 14 ~~~~r~~~~~~~~~~~~-i~l~~g~~~~~~~~D~~~~Frq~s~F~yl~G~~~~p~~~~~i~~~~~~~~~l~~~-~d---- 87 (443)
T PRK13607 14 TLQQRTRDALAREGLDA-LLIHSGELHRVFLDDHDYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYQP-VD---- 87 (443)
T ss_pred HHHHHHHHHHhccCCCE-EEEECCCcccccCCCCCCCcCcCCCcchhcCCCCCCCeEEEEEeCCCCEEEEEec-Cc----
Confidence 45555545444433333 444444 44455789999999999999999996 79999999654 3 5556664 43
Q ss_pred cccCccCChhh-hhhHhCCccccchhhHHHHHHHhhcCCCeEEEcCCcchhhhhHHHHHHhhccCCceechHHHHHHhhc
Q 016563 132 IWKGQIAGVDA-APETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRW 210 (387)
Q Consensus 132 ~w~~~~~~~~~-~~~~~~~d~~~~~~~l~~~L~~~~~~~~~I~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~lR~ 210 (387)
.|.+.....+. ..+.++.+...+.+.+...|... .....++.......+. ..+. .+..+..++.+.|.++|+
T Consensus 88 ~W~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~l~~lR~ 160 (443)
T PRK13607 88 YWHNVEPLPESFWTEEVDIKALTKADGIASLLPAD--RGNVAYIGEVPERALA---LGFE--ASNINPKGVLDYLHYHRA 160 (443)
T ss_pred cccCCCCCchHHHHHhcChHhcccHHHHHHhhccC--CCceEEeccccccccc---ccCc--ccccChHHHHHHHHHHHh
Confidence 69987643333 34556655555656665555431 2222332211000000 0010 012356678999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccccCCCC-ccCC
Q 016563 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQ-KIDD 289 (387)
Q Consensus 211 iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~~~~~~-~l~~ 289 (387)
|||++||++||+|++++++++..+++.++||+||.||++.+...+ ..|+...+|+++|++|+|++++||.++++ .+++
T Consensus 161 iKs~~EI~~mr~A~~i~~~a~~~~~~~i~pG~tE~ei~~~~~~~~-~~~~~~~~y~~iva~G~naa~~H~~~~~~~~~~~ 239 (443)
T PRK13607 161 YKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFDINLAYLTAT-GQRDNDVPYGNIVALNEHAAVLHYTKLDHQAPAE 239 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh-CCCCcCCCCCcEEEecCcceEecCCccCCCCCCC
Confidence 999999999999999999999999999999999999998776543 44556679999999999999999999985 6899
Q ss_pred CCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCccCC
Q 016563 290 GDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNS 369 (387)
Q Consensus 290 Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~g~~~~ 369 (387)
||+|++|+|++|+||+||+||||+ |+++++++++|++++++|+++++++|||+++.|||.++.+++.+.|.++|+.++
T Consensus 240 Gd~vliD~Ga~~~GY~sDiTRTf~--g~~~~~~~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~~L~~~Gl~~g 317 (443)
T PRK13607 240 MRSFLIDAGAEYNGYAADITRTYA--AKEDNDFAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTG 317 (443)
T ss_pred CCEEEEEeeEEECCEEecceEEEe--cCCCHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999996 678999999999999999999999999999999999999999999999999864
Q ss_pred -CCC----Ccc-ccccccCCCCCC
Q 016563 370 -DGT----DPY-NELNPTSIGDNY 387 (387)
Q Consensus 370 -~~~----~~~-~~~~~H~iGH~l 387 (387)
+.+ .++ ..||||++||+|
T Consensus 318 ~~~~~~~~~g~~~~~f~HglGH~i 341 (443)
T PRK13607 318 LSEEAMVEQGITSPFFPHGLGHPL 341 (443)
T ss_pred CCHHHHHhCCCceEecCCCccCcc
Confidence 110 023 579999999986
No 5
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=100.00 E-value=5.4e-52 Score=408.57 Aligned_cols=291 Identities=18% Similarity=0.169 Sum_probs=240.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCeE-EEEecCCcccccCCcCCCccCCCceeeecCCCCCC----eEEEEecCCeEEEEecC
Q 016563 51 GISAEEYISRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPG----GVAVLSHECGLCMFMPE 125 (387)
Q Consensus 51 ~i~~~ey~~R~~~L~~~m~~~~l-~il~~~~~~~~~~d~~y~f~q~~n~~YlTG~~~p~----~~lvi~~~~~~~l~v~~ 125 (387)
.||.+||++|++||++.|+++++ ++++++ ++|++|||||.... .+++|+.++++++++|.
T Consensus 5 ~f~~~E~~~Rl~rl~~~m~~~~lDalli~~---------------~~ni~YltG~~~~~~~~~~~l~v~~~~~~~l~~~~ 69 (391)
T TIGR02993 5 FFTRAEYQARLDKTRAAMEARGIDLLIVTD---------------PSNMAWLTGYDGWSFYVHQCVLLPPEGEPIWYGRG 69 (391)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEcC---------------cccceeeccCCCCceEEEEEEEEcCCCceEEEehh
Confidence 47889999999999999999999 677765 69999999998643 36778888889999987
Q ss_pred CCCcc---ccccCc--cCChhhhhhHhCCccccchhhHHHHHHHhhcCCCeEEEcCCcchhhhhHHHHHHhhccCCceec
Q 016563 126 TSAHD---VIWKGQ--IAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRN 200 (387)
Q Consensus 126 ~~~~~---~~w~~~--~~~~~~~~~~~~~d~~~~~~~l~~~L~~~~~~~~~I~~d~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (387)
.+... ..|... ..++... ........+.+.+.+.|++......+||+|.+...+++..+..|.+.+|+.+++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~~~~ig~e~~~~~~~~~~~~~l~~~l~~~~~~d 147 (391)
T TIGR02993 70 QDANGAKRTAFMDHDNIVGYPDH--YVQSTERHPMDYLSEILQDRGWDSLTIGVEMDNYYFSAAAFASLQKHLPNARFVD 147 (391)
T ss_pred hhhhhHhheeeccccceeecccc--cccCCCCCHHHHHHHHHHhcCCCCCcEEEecCCCccCHHHHHHHHHhCCCCEEEe
Confidence 65421 223211 1111100 0000112345566777766544455799987644456777888999999899999
Q ss_pred hHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH----cCCCCCCCcceEecCCCCc
Q 016563 201 LSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKM----RGAQRMAFNPVVGGGPNAA 276 (387)
Q Consensus 201 ~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~----~G~~~~~~~~ivasG~~a~ 276 (387)
+++++.++|+|||++||++||+|++|+++++.++.+.++||+||.||++.+.+.... .|++.++|.+++++|+|++
T Consensus 148 ~~~~~~~lR~iKs~~EI~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~~~~~g~~~~~~~~iv~sG~~~a 227 (391)
T TIGR02993 148 ATALVNWQRAVKSETEISYMRVAARIVEKMHQRIFERIEPGMRKCDLVADIYDAGIRGVDGFGGDYPAIVPLLPSGADAS 227 (391)
T ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhhcccCcCCCcCCcccccccCcccc
Confidence 999999999999999999999999999999999999999999999999998765332 4555677888999999999
Q ss_pred cccccCCCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016563 277 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGM 356 (387)
Q Consensus 277 ~~H~~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~ 356 (387)
.+|+.|+++++++||+|++|+|+.|+||+||+||||++ |+++++|+++|++++++|+++++++|||++++||+.++++.
T Consensus 228 ~pH~~~~~~~l~~gd~v~iD~g~~~~GY~sD~tRT~~v-G~p~~~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~ 306 (391)
T TIGR02993 228 APHLTWDDSPMKVGEGTFFEIAGCYKRYHCPLSRTVFL-GKPTQAFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAV 306 (391)
T ss_pred CCCCCCCCCcccCCCEEEEEeeeecccCccceeEEEEc-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHH
Q 016563 357 LRK 359 (387)
Q Consensus 357 l~~ 359 (387)
+++
T Consensus 307 ~~~ 309 (391)
T TIGR02993 307 LKK 309 (391)
T ss_pred HHH
Confidence 977
No 6
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=100.00 E-value=1.9e-52 Score=385.13 Aligned_cols=332 Identities=24% Similarity=0.407 Sum_probs=273.4
Q ss_pred CCHHHHHHHHHHHHHhCCCC---------e--EEEEecCCcccccC-CcCCCccCCCceeeecCCCCCCeEEEEec-CCe
Q 016563 52 ISAEEYISRRKRLLEILPEN---------S--VAILAAAPEKMMTD-VVPYPYRQDANYLYITGCQQPGGVAVLSH-ECG 118 (387)
Q Consensus 52 i~~~ey~~R~~~L~~~m~~~---------~--l~il~~~~~~~~~~-d~~y~f~q~~n~~YlTG~~~p~~~lvi~~-~~~ 118 (387)
+|.+-+...+.|+-+.++.+ + ++++.++..+-++. |..+.|||++.|+||.|..+|+++..|.- .++
T Consensus 12 vP~~lf~~nr~rl~~~lr~k~~~~nr~~~~~s~vllqgGeE~nrYctD~~~lFrQesYF~~lfGV~ep~~yg~idv~tgK 91 (492)
T KOG2737|consen 12 VPMELFAGNRKRLLEALRKKLLSSNRSLDGGSFVLLQGGEEKNRYCTDTTELFRQESYFAYLFGVREPGFYGAIDVGTGK 91 (492)
T ss_pred ecHHHhhcchHHHHHHHHhhcccccccccCceEEEEecchhhcccccchHHHHhhhhHHHHhhcCCCccceEEEEecCCc
Confidence 55666666666655544332 2 46777776665554 88889999999999999999998887765 468
Q ss_pred EEEEecCCCCccccccCccCChhhhhhHhCCccccchhhHHHHHHHhhcCCCeEEEcC--Ccchhhh---hHHHHHHhhc
Q 016563 119 LCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQ--ETAVQTY---TNLEAFQKAD 193 (387)
Q Consensus 119 ~~l~v~~~~~~~~~w~~~~~~~~~~~~~~~~d~~~~~~~l~~~L~~~~~~~~~I~~d~--~~~~~~~---~~~~~l~~~~ 193 (387)
.+||+|+.+....+|.|...+.+.+++.+.+|++..++++..+++... .+.++.-. ++++..+ ..+.... .+
T Consensus 92 stLFvPrlp~~ya~W~G~i~~l~~fke~y~VDev~yvde~~~~~~~~~--~k~l~~l~g~nTDsg~v~~e~~f~g~~-kf 168 (492)
T KOG2737|consen 92 STLFVPRLPDSYATWMGEILSLQHFKEKYAVDEVFYVDEIIQVLKGSK--PKLLYLLRGLNTDSGNVLKEASFAGIS-KF 168 (492)
T ss_pred eEEEecCCChhhceeccccCCHHHHHHHhhhhheeehHhHHHHhhccC--ccceeeeeccccCcccccCcccccchh-hc
Confidence 999999999999999999999999999999999988899888886532 22222110 1111000 0011111 11
Q ss_pred cCCceechHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc-CCCCCCCcceEecC
Q 016563 194 FYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR-GAQRMAFNPVVGGG 272 (387)
Q Consensus 194 ~~~~~~~~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~-G~~~~~~~~ivasG 272 (387)
+ ....-+-+++.++|.|||+.||+.||.|++|+++|+.++|+.++||+.|.++.+.+++..... ||...+|.+|++||
T Consensus 169 ~-~D~~~lyp~m~E~RviKs~~EieviRya~kISseaH~~vM~~~~pg~~Eyq~eslF~hh~y~~GGcRh~sYtcIc~sG 247 (492)
T KOG2737|consen 169 E-TDLTLLYPILAECRVIKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGGCRHLSYTCICASG 247 (492)
T ss_pred c-cCchhhhHHHhhheeeCCHHHHHHHHHHHhhccHHHHHHHHhCCchHhHHhHHHHHHHhhhccCCccccccceeeecC
Confidence 1 123346778999999999999999999999999999999999999999999999999887766 56889999999999
Q ss_pred CCCccccc----cCCCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q 016563 273 PNAAVIHY----SRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQ 348 (387)
Q Consensus 273 ~~a~~~H~----~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~d 348 (387)
+|++++|| .||++.+++||++|+|+|++|++|.||||++||++||||++|+.+|++|++++.++++++|||+.+.|
T Consensus 248 ~ns~vLHYgha~apNd~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYnaVLda~navm~a~KpGv~W~D 327 (492)
T KOG2737|consen 248 DNSAVLHYGHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYNAVLDASNAVMEAMKPGVWWVD 327 (492)
T ss_pred CCcceeeccccCCCCCcccCCCCEEEEecCcceeeeecccceeccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 99999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCCC-----ccccccccCCCCCC
Q 016563 349 IHHYSVGMLRKGLKEIGIVNSDGTD-----PYNELNPTSIGDNY 387 (387)
Q Consensus 349 i~~~~~~~l~~~l~~~g~~~~~~~~-----~~~~~~~H~iGH~l 387 (387)
+|..+.+++-+.|.+.|+.+++.+. .-..|+||++||.|
T Consensus 328 mh~La~kvlle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH~l 371 (492)
T KOG2737|consen 328 MHKLAEKVLLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGHFL 371 (492)
T ss_pred HHHHHHHHHHHHHHhcCceeccHHHHHHhccCeeeccccccccc
Confidence 9999999999999999998876432 23689999999975
No 7
>PRK09795 aminopeptidase; Provisional
Probab=100.00 E-value=2.5e-49 Score=386.47 Aligned_cols=286 Identities=20% Similarity=0.283 Sum_probs=229.2
Q ss_pred HHHHHHHHhCCCCeE-EEEecCCcccccCCcCCCccCCCceeeecCCCCCCeEEEEecCCeEEEEecCCCCccccccCcc
Q 016563 59 SRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQI 137 (387)
Q Consensus 59 ~R~~~L~~~m~~~~l-~il~~~~~~~~~~d~~y~f~q~~n~~YlTG~~~p~~~lvi~~~~~~~l~v~~~~~~~~~w~~~~ 137 (387)
+|+++|++.|+++++ ++++.+ +.|++|||||....++++|+.++. +||++..... .+....
T Consensus 2 ~Rl~~l~~~m~~~~lDa~lI~~---------------~~n~~YLTGf~g~~g~llIt~~~~-~l~td~ry~~--qa~~~~ 63 (361)
T PRK09795 2 TLLASLRDWLKAQQLDAVLLSS---------------RQNKQPHLGISTGSGYVVISRESA-HILVDSRYYA--DVEARA 63 (361)
T ss_pred cHHHHHHHHHHHCCCCEEEECC---------------ccccccccCccCCCeEEEEECCCC-EEEcCcchHH--HHHhhC
Confidence 589999999999999 677765 589999999998777888888764 5777654211 100000
Q ss_pred CChhhhhhHhCCccccchhhHHHHHHHhhc--CCCeEEEcCCcchhhhhHHHHHHhhccCCceechHHHHHHhhccCCHH
Q 016563 138 AGVDAAPETFKADKAYPMSKIQEILPDMIG--RSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPA 215 (387)
Q Consensus 138 ~~~~~~~~~~~~d~~~~~~~l~~~L~~~~~--~~~~I~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~lR~iKs~~ 215 (387)
.+.+ +...+ ..+.+.+.|.+++. +.++||+|... +++..+..|.+.+ ..++++. .+.++|+|||++
T Consensus 64 ~~~~----v~~~~---~~~~~~~~L~~~L~~~~~~~Ig~e~~~--~s~~~~~~L~~~l-~~~~~~~--~~~~lR~iKs~~ 131 (361)
T PRK09795 64 QGYQ----LHLLD---ATNTLTTIVNQIIADEQLQTLGFEGQQ--VSWETAHRWQSEL-NAKLVSA--TPDVLRQIKTPE 131 (361)
T ss_pred CCce----EEEec---CCccHHHHHHHHHHhcCCcEEEEecCc--ccHHHHHHHHHhc-Ccccccc--cHHHHhcCCCHH
Confidence 0000 10000 01123334444443 23579998753 4555566676554 3445544 389999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccccCCCCccCCCCEEEE
Q 016563 216 ELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLM 295 (387)
Q Consensus 216 EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~~~~~~~l~~Gd~vlv 295 (387)
||+.||+|++|+++++..+.+.++||+||.||++.+++.+.++|++..+|+++|++|+|++.||+.|++++|++||+|++
T Consensus 132 Ei~~~r~a~~i~~~~~~~~~~~i~~G~tE~e~~~~~~~~~~~~G~~~~~f~~iv~sG~~~~~ph~~~~~~~l~~gd~v~~ 211 (361)
T PRK09795 132 EVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDTIVASGWRGALPHGKASDKIVAAGEFVTL 211 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHCCCCcCCCCeEEEEeccccccCCCCCCceecCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeceeeCCeeeceeEEeecCCC-CCHH---HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCccCCCC
Q 016563 296 DVGCELHGYVSDMTRTWPPCGS-FSSL---EEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDG 371 (387)
Q Consensus 296 D~g~~~~GY~sDitRT~~v~G~-~s~~---q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~g~~~~~~ 371 (387)
|+|+.|+|||||+||||+++|+ ++++ ++++|++++++|+++++++|||++++||++++++++++.
T Consensus 212 d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~~~~~~----------- 280 (361)
T PRK09795 212 DFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEA----------- 280 (361)
T ss_pred EeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHc-----------
Confidence 9999999999999999998544 3433 789999999999999999999999999999999999884
Q ss_pred CCccccccccCCCCCC
Q 016563 372 TDPYNELNPTSIGDNY 387 (387)
Q Consensus 372 ~~~~~~~~~H~iGH~l 387 (387)
+++.+|+|++||++
T Consensus 281 --g~~~~~~h~~GHgi 294 (361)
T PRK09795 281 --GYGDYFGHNTGHAI 294 (361)
T ss_pred --CCCccCCCCCCccC
Confidence 67889999999986
No 8
>PRK14575 putative peptidase; Provisional
Probab=100.00 E-value=3.6e-48 Score=382.74 Aligned_cols=282 Identities=18% Similarity=0.264 Sum_probs=224.8
Q ss_pred HHHHHHHhCCCCeE-EEEecCCcccccCCcCCCccCCCceeeecCCCCCC---------eEEEEecC-CeEE-EEecCCC
Q 016563 60 RRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPG---------GVAVLSHE-CGLC-MFMPETS 127 (387)
Q Consensus 60 R~~~L~~~m~~~~l-~il~~~~~~~~~~d~~y~f~q~~n~~YlTG~~~p~---------~~lvi~~~-~~~~-l~v~~~~ 127 (387)
=++||++.|+++|+ +++++. ++||+|||||.... ++++|+.+ ++++ +++|..+
T Consensus 12 ~~~rlr~~m~~~glD~lvl~~---------------p~n~~ylTG~~~~~~~~~r~~~~~~lvv~~~~~~p~~~i~p~~E 76 (406)
T PRK14575 12 VSRKLRTIMERDNIDAVIVTT---------------CDNFYHVTGILSFFMYTFRNTGTAIAVVFRDVKIPSLIIMNEFE 76 (406)
T ss_pred HHHHHHHHHHHcCCCEEeecC---------------cchheeecccccccceecccCCceEEEEEcCCCCCceEEechhh
Confidence 57899999999999 677765 69999999987632 34788887 4455 7877766
Q ss_pred Cccc-------------cccCccCCh---hhhhhHhCCccccchh----hHHHHHHHhhcCCCeEEEcCCcchhhhhHHH
Q 016563 128 AHDV-------------IWKGQIAGV---DAAPETFKADKAYPMS----KIQEILPDMIGRSSKLFHNQETAVQTYTNLE 187 (387)
Q Consensus 128 ~~~~-------------~w~~~~~~~---~~~~~~~~~d~~~~~~----~l~~~L~~~~~~~~~I~~d~~~~~~~~~~~~ 187 (387)
.... .|.+..... +........+..++.+ .+.+.|++.....++||+|.+. ++...+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~igve~~~--~~~~~~~ 154 (406)
T PRK14575 77 AASLTLDMPNAELKTFPVWVDVDDPFNMRDSANNNKERPIGPPIESVCNILKDALNDARVLNKKIAIDLNI--MSNGGKR 154 (406)
T ss_pred hhhhcccccccccccCCceEeeeccccccchhhhhhcCCCCCCHHHHHHHHHHHHHhcCCcCCEEEEccCC--CCHHHHH
Confidence 5321 121100000 0000000001112224 3445555544456799999753 4566678
Q ss_pred HHHhhccCCceechHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcc
Q 016563 188 AFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNP 267 (387)
Q Consensus 188 ~l~~~~~~~~~~~~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ 267 (387)
.|+..+|+.+++|+++++.++|+|||++||++||+|+++++++++++++.++||+||.||++.+++.+.+.|.....+.+
T Consensus 155 ~l~~~lp~~~~~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~~~~~ 234 (406)
T PRK14575 155 VIDAVMPNVDFVDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHFSRFH 234 (406)
T ss_pred HHHHhCCCCeEEEcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcCCcCc
Confidence 88888898899999999999999999999999999999999999999999999999999999999988888876555557
Q ss_pred eEecCCCCccccccCCCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Q 016563 268 VVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLL 347 (387)
Q Consensus 268 ivasG~~a~~~H~~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~ 347 (387)
++.+|.+ ..+|+.|+++++++||+|++|+|+.|+||++|+||||++ |+||++|+++|++++++|+++++++|||++++
T Consensus 235 ~v~~G~~-~~~h~~~~~~~l~~Gd~v~iD~g~~~~GY~sditRT~~v-G~~~~~~~~~~~~~~~a~~~~~~~~rpG~~~~ 312 (406)
T PRK14575 235 LISVGAD-FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVV-GEPPEITRKIYQTIRTGHEHMLSMVAPGVKMK 312 (406)
T ss_pred eEEECCC-cccCCCCCCCcCCCCCEEEEEeceEECCEeeeeEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 8889988 568999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 016563 348 QIHHYSVGMLRKG 360 (387)
Q Consensus 348 di~~~~~~~l~~~ 360 (387)
||++++++.+++.
T Consensus 313 dv~~a~~~~~~~~ 325 (406)
T PRK14575 313 DVFDSTMEVIKKS 325 (406)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999873
No 9
>PRK14576 putative endopeptidase; Provisional
Probab=100.00 E-value=4.9e-46 Score=367.44 Aligned_cols=284 Identities=18% Similarity=0.235 Sum_probs=222.5
Q ss_pred HHHHHHHHHHhCCCCeE-EEEecCCcccccCCcCCCccCCCceeeecCCCCC------C---eEEEEecC-CeE-EEEec
Q 016563 57 YISRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQP------G---GVAVLSHE-CGL-CMFMP 124 (387)
Q Consensus 57 y~~R~~~L~~~m~~~~l-~il~~~~~~~~~~d~~y~f~q~~n~~YlTG~~~p------~---~~lvi~~~-~~~-~l~v~ 124 (387)
...=.+|+++.|+++|+ ++++++ ++||+|||||... . .+++++.+ +++ .+++|
T Consensus 9 ~~~~~~r~r~~M~~~gldalll~~---------------p~ni~YlTG~~~~~~~~~r~~~~~v~v~~~d~~~p~~~i~~ 73 (405)
T PRK14576 9 LEAVSRKARVVMEREGIDALVVTV---------------CDNFYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQIIMN 73 (405)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecc---------------ccceeeeccccccceeeeccCCeEEEEecCCCCCCcEEEec
Confidence 33457899999999999 677765 6999999999753 1 12223345 444 67887
Q ss_pred CCCCcc-------------ccccCccCChhhhhhHh--CCccccch----hhHHHHHHHhhcCCCeEEEcCCcchhhhhH
Q 016563 125 ETSAHD-------------VIWKGQIAGVDAAPETF--KADKAYPM----SKIQEILPDMIGRSSKLFHNQETAVQTYTN 185 (387)
Q Consensus 125 ~~~~~~-------------~~w~~~~~~~~~~~~~~--~~d~~~~~----~~l~~~L~~~~~~~~~I~~d~~~~~~~~~~ 185 (387)
..+... ..|.......+...... ......+. +.+.+.|++.....++||+|.+. .+...
T Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~rigve~~~--~~~~~ 151 (405)
T PRK14576 74 EFEAASTHFDMPNSVLKTFPVWVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLVKNALEDAGVLDKTIAIELQA--MSNGG 151 (405)
T ss_pred hhhhhhhhccccccccccCCceEeecCCcccchhhhccccCCCCcHHHHHHHHHHHHHHhCCCCCEEEEccCC--CCHHH
Confidence 765422 12221100000000000 00000111 34556666665556799998753 34555
Q ss_pred HHHHHhhccCCceechHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCC
Q 016563 186 LEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAF 265 (387)
Q Consensus 186 ~~~l~~~~~~~~~~~~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~ 265 (387)
+..|...+|+.+++|+++++.++|+|||++||+.||+|++++++++.++++.++||+||.||++.+++.+.+.|....++
T Consensus 152 ~~~l~~~~~~~~~vd~~~~l~~lR~iKs~~EI~~~r~A~~i~~~~~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~~~~~ 231 (405)
T PRK14576 152 KGVLDKVAPGLKLVDSTALFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNFSR 231 (405)
T ss_pred HHHHHhhCCCCeEEEcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCcCCC
Confidence 67788888889999999999999999999999999999999999999999999999999999999999999988654455
Q ss_pred cceEecCCCCccccccCCCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016563 266 NPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTS 345 (387)
Q Consensus 266 ~~ivasG~~a~~~H~~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~ 345 (387)
.++|++|+| ..+|+.|+++.++.||+|++|+|+.|+||++|+||||++ |+|+++|+++|++++++++++++++|||++
T Consensus 232 ~~~v~~G~~-~~~h~~~~~~~l~~Gd~v~~d~g~~~~GY~sd~tRT~~~-G~p~~~~~~~~~~~~~a~~a~~~~~rPG~~ 309 (405)
T PRK14576 232 FNLISVGDN-FSPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVL-GEPDKLTQQIYDTIRTGHEHMLSMVAPGVK 309 (405)
T ss_pred CCEEEECCc-ccCCCCCCCcccCCCCEEEEEeceeECCEEeeeeEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 589999999 468999999999999999999999999999999999987 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 016563 346 LLQIHHYSVGMLRK 359 (387)
Q Consensus 346 ~~di~~~~~~~l~~ 359 (387)
++||+.++++.+.+
T Consensus 310 ~~dv~~a~~~~~~~ 323 (405)
T PRK14576 310 LKAVFDSTMAVIKT 323 (405)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999887
No 10
>PRK15173 peptidase; Provisional
Probab=100.00 E-value=1e-40 Score=319.95 Aligned_cols=199 Identities=19% Similarity=0.264 Sum_probs=178.9
Q ss_pred hHHHHHHHhhcCCCeEEEcCCcchhhhhHHHHHHhhccCCceechHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016563 157 KIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTML 236 (387)
Q Consensus 157 ~l~~~L~~~~~~~~~I~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~ 236 (387)
.+.+.|.++....++||+|.+. ++...+..|++.+|+.+++|+++++.++|+|||++||+.||+|++++++++..+++
T Consensus 43 ~l~~~l~~~g~~~~rigve~~~--~~~~~~~~l~~~l~~~~~~d~~~~i~~lR~iKs~~EI~~mr~A~~i~~~~~~~~~~ 120 (323)
T PRK15173 43 ILKDALNDARVLNKKIAIDLNI--MSNGGKRVIDAVMPNVDFVDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASK 120 (323)
T ss_pred HHHHHHHHcCccCCEEEEecCc--cCHHHHHHHHhhCCCCeEEEhHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554456789999753 46667788998889889999999999999999999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccccCCCCccCCCCEEEEEeceeeCCeeeceeEEeecCC
Q 016563 237 HSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCG 316 (387)
Q Consensus 237 ~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G 316 (387)
.++||+||.||++.+++.+.+.|....++.+++++|.+ ..+|+.|+++.+++||+|++|+|+.|+||++|+||||++ |
T Consensus 121 ~i~~G~tE~el~a~~~~~~~~~g~~~~~~~~~i~~G~~-~~~h~~~~~~~l~~Gd~V~iD~g~~~~GY~aDitRT~~v-G 198 (323)
T PRK15173 121 LIRVGCTSAELTAAYKAAVMSKSETHFSRFHLISVGAD-FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVV-G 198 (323)
T ss_pred HccCCCCHHHHHHHHHHHHHHcCCCCCCCCcEEEECCC-CccCCCCCCCccCCCCEEEEEeCccCCCEeeeeEEEEEc-C
Confidence 99999999999999998888887765555578888988 468999999999999999999999999999999999998 9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016563 317 SFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK 359 (387)
Q Consensus 317 ~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~ 359 (387)
+|+++|+++|++++++++++++++|||++++||++++++.+++
T Consensus 199 ~p~~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~ 241 (323)
T PRK15173 199 EPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK 241 (323)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987
No 11
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=8.5e-37 Score=283.15 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=144.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCC-----CCCcceEecCCCCccccccCCC
Q 016563 210 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR-----MAFNPVVGGGPNAAVIHYSRND 284 (387)
Q Consensus 210 ~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~-----~~~~~ivasG~~a~~~H~~~~~ 284 (387)
.||||+||++||+|+++++++++.+++.++||+||.||++.+++.+.++|++. .+|++++++|.|+..+|+.|++
T Consensus 3 ~iKs~~EI~~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~~g~n~~~~H~~p~~ 82 (248)
T PRK12897 3 TIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVNDEMCHAFPAD 82 (248)
T ss_pred eeCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccCCCCcceEeccCCEeecCCCCC
Confidence 68999999999999999999999999999999999999999999999999873 4788889999999999999999
Q ss_pred CccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 016563 285 QKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKG 360 (387)
Q Consensus 285 ~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~ 360 (387)
++|++||+|++|+|+.|+||++|+||||++ |++|++|+++|++++++++++++++|||++++||+.++++.+++.
T Consensus 83 ~~l~~Gd~V~iD~g~~~~GY~sD~tRT~~v-G~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~ 157 (248)
T PRK12897 83 VPLTEGDIVTIDMVVNLNGGLSDSAWTYRV-GKVSDEAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANE 157 (248)
T ss_pred cccCCCCEEEEEeeEEECCEEEEEEEEEEc-CCCCHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHc
Confidence 999999999999999999999999999998 999999999999999999999999999999999999999988873
No 12
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=9.6e-36 Score=279.45 Aligned_cols=150 Identities=17% Similarity=0.122 Sum_probs=142.1
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCC---------CCCCcceEecCCCCcccc
Q 016563 209 RWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ---------RMAFNPVVGGGPNAAVIH 279 (387)
Q Consensus 209 R~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~---------~~~~~~ivasG~~a~~~H 279 (387)
..|||++||++||+|++|+++++..+++.++||+||.||++.+++.+.+.|+. ..+|++++++|.|+..+|
T Consensus 2 ~~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G~n~~~~H 81 (286)
T PRK07281 2 ITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDEVAH 81 (286)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEeccccccC
Confidence 36899999999999999999999999999999999999999999999988752 257999999999999999
Q ss_pred ccCCCCccCCCCEEEEEece---------------------------eeCCeeeceeEEeecCCCCCHHHHHHHHHHHHH
Q 016563 280 YSRNDQKIDDGDLVLMDVGC---------------------------ELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 332 (387)
Q Consensus 280 ~~~~~~~l~~Gd~vlvD~g~---------------------------~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a 332 (387)
+.|++++|++||+|++|+|+ .|+||++|+||||.+ |+++++|+++|++++++
T Consensus 82 ~~p~~~~l~~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~v-G~~~~~~~~l~~~~~ea 160 (286)
T PRK07281 82 AFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAV-GTPSDEVKNLMDVTKEA 160 (286)
T ss_pred CCCCCcCcCCCCEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEEC-CCCCHHHHHHHHHHHHH
Confidence 99999999999999999997 489999999999987 99999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016563 333 NKECLELCMPGTSLLQIHHYSVGMLRK 359 (387)
Q Consensus 333 ~~~~i~~~kpG~~~~di~~~~~~~l~~ 359 (387)
|+++++++|||++++||++++++++++
T Consensus 161 ~~~ai~~~kpG~~~~di~~a~~~~~~~ 187 (286)
T PRK07281 161 MYRGIEQAVVGNRIGDIGAAIQEYAES 187 (286)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
No 13
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00 E-value=2e-35 Score=278.86 Aligned_cols=158 Identities=19% Similarity=0.252 Sum_probs=147.1
Q ss_pred hHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCC-------CCCCcceEecC
Q 016563 201 LSRLTHELRW-VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ-------RMAFNPVVGGG 272 (387)
Q Consensus 201 ~~~~i~~lR~-iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~-------~~~~~~ivasG 272 (387)
+.+.+.++|. |||++||+.||+|++|++++++++++.++||+||.||++.++..+.+.|+. ..+|++++++|
T Consensus 32 ~~~~~~~~~i~IKs~~EIe~~R~Aa~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~~~~~G~~~~~~~~~~~~f~~~v~~g 111 (291)
T PRK12318 32 KQLYASQYDIIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSPPFPKTICTS 111 (291)
T ss_pred chhccCCCceEECCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCccccccCCCCCCcceEee
Confidence 3444556666 999999999999999999999999999999999999999998888888863 24688899999
Q ss_pred CCCccccccCCCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016563 273 PNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHY 352 (387)
Q Consensus 273 ~~a~~~H~~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~ 352 (387)
.|+..+|+.|++++|++||+|++|+|+.|+||++|+||||++ |++|++|+++|++++++++++++++|||++++||+.+
T Consensus 112 ~n~~~~H~~p~~~~l~~GD~V~vD~g~~~~GY~aDitRT~~v-G~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a 190 (291)
T PRK12318 112 LNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMI-GEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEV 190 (291)
T ss_pred ccceeecCCCCCCccCCCCEEEEEEeEEECcEEEEEEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 016563 353 SVGMLRK 359 (387)
Q Consensus 353 ~~~~l~~ 359 (387)
+++++++
T Consensus 191 ~~~~~~~ 197 (291)
T PRK12318 191 IENCADK 197 (291)
T ss_pred HHHHHHH
Confidence 9999887
No 14
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=100.00 E-value=6e-35 Score=270.85 Aligned_cols=166 Identities=23% Similarity=0.272 Sum_probs=151.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCC-----CCCcceEecCCCCccccccCCC
Q 016563 210 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR-----MAFNPVVGGGPNAAVIHYSRND 284 (387)
Q Consensus 210 ~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~-----~~~~~ivasG~~a~~~H~~~~~ 284 (387)
+|||++||++||+|++|++++++.+++.++||+||.||++.+++.+.+.|++. .+|++++++|.|+..+|+.|++
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~~G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~H~~~~~ 81 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCISVNEVVIHGIPDK 81 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHCCCCccccCCCCCCceeEeccccEEEecCCCC
Confidence 69999999999999999999999999999999999999999999999999763 2577788999999999999999
Q ss_pred CccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhc
Q 016563 285 QKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEI 364 (387)
Q Consensus 285 ~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~ 364 (387)
++|++||+|++|+|+.|+||++|++|||++ |+||++|+++|++++++++++++++|||++++||++++++++.+.
T Consensus 82 ~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~v-G~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~---- 156 (247)
T TIGR00500 82 KVLKDGDIVNIDVGVIYDGYHGDTAKTFLV-GKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAK---- 156 (247)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEEEEc-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc----
Confidence 999999999999999999999999999998 899999999999999999999999999999999999999988773
Q ss_pred CccCCCCCCccccccccCCCCC
Q 016563 365 GIVNSDGTDPYNELNPTSIGDN 386 (387)
Q Consensus 365 g~~~~~~~~~~~~~~~H~iGH~ 386 (387)
|+.. ...+++|++|+.
T Consensus 157 g~~~------~~~~~GHgiG~~ 172 (247)
T TIGR00500 157 GFSV------VREYCGHGIGRK 172 (247)
T ss_pred CCEe------ccCccCCccCcc
Confidence 4421 234677887764
No 15
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=100.00 E-value=8.6e-35 Score=269.18 Aligned_cols=170 Identities=40% Similarity=0.699 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccccCCCCccCCCCEEEEE
Q 016563 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMD 296 (387)
Q Consensus 217 I~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~~~~~~~l~~Gd~vlvD 296 (387)
|++||+|++++++++.++++.++||+||.||++.+++.+.+.|++ ++|++++++|+|+..+|+.|++++|++||+|++|
T Consensus 1 i~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~G~~-~~~~~~v~~g~~~~~~H~~~~~~~l~~Gd~v~vD 79 (243)
T cd01087 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGAR-LAYSYIVAAGSNAAILHYVHNDQPLKDGDLVLID 79 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCC-cCCCCeEEECCCccccCCCcCCCcCCCCCEEEEE
Confidence 689999999999999999999999999999999999999999998 7789999999999999999999999999999999
Q ss_pred eceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCccCCCCC----
Q 016563 297 VGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGT---- 372 (387)
Q Consensus 297 ~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~g~~~~~~~---- 372 (387)
+|+.|+||++|++|||+++|+++++|+++|++++++++++++++|||++++||++++++.+++.+.++|+..++.+
T Consensus 80 ~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~ 159 (243)
T cd01087 80 AGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVE 159 (243)
T ss_pred eCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCchHhhhh
Confidence 9999999999999999886799999999999999999999999999999999999999999999889998652100
Q ss_pred -CccccccccCCCCCC
Q 016563 373 -DPYNELNPTSIGDNY 387 (387)
Q Consensus 373 -~~~~~~~~H~iGH~l 387 (387)
.+...+|+|++||++
T Consensus 160 ~~~~~~~~~h~~Ghgi 175 (243)
T cd01087 160 SGAYAKFFPHGLGHYL 175 (243)
T ss_pred hhhhhhhcCCCCcccc
Confidence 034689999999985
No 16
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=100.00 E-value=3.3e-34 Score=262.16 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCC------cceEecCCCCccccccCCCCccCCC
Q 016563 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAF------NPVVGGGPNAAVIHYSRNDQKIDDG 290 (387)
Q Consensus 217 I~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~------~~ivasG~~a~~~H~~~~~~~l~~G 290 (387)
|++||+|++++++++.++++.++||+||.||++.+.+.+.+.|+...+| .|++++|+|+..+|+.+++++|++|
T Consensus 1 I~~ir~Aa~i~d~~~~~~~~~i~pG~tE~ei~a~~~~~~~~~ga~~~~~~~~~~~~~~v~~G~~~~~~H~~~~~r~l~~G 80 (228)
T cd01090 1 IALIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSGINTDGAHNPVTNRKVQRG 80 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCcccccCcceEEEeeccccccCCCCCCcccCCC
Confidence 6899999999999999999999999999999999999999998764433 2679999999999999999999999
Q ss_pred CEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCccCCC
Q 016563 291 DLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370 (387)
Q Consensus 291 d~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~g~~~~~ 370 (387)
|+|++|+|+.|+||++|++|||++ |++|++|+++|++++++|+++++++|||++++||++++++.+++.
T Consensus 81 D~v~~d~g~~~~GY~ad~~RT~~v-G~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~---------- 149 (228)
T cd01090 81 DILSLNCFPMIAGYYTALERTLFL-DEVSDAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREH---------- 149 (228)
T ss_pred CEEEEEEeEEECCEeeeeEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHc----------
Confidence 999999999999999999999997 999999999999999999999999999999999999999999873
Q ss_pred CCCccccccccCCCCCC
Q 016563 371 GTDPYNELNPTSIGDNY 387 (387)
Q Consensus 371 ~~~~~~~~~~H~iGH~l 387 (387)
++.+++.|++||++
T Consensus 150 ---G~~~~~~~~~GHgi 163 (228)
T cd01090 150 ---DLLRYRTFGYGHSF 163 (228)
T ss_pred ---CCCcccccccCccc
Confidence 56777888888875
No 17
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.1e-33 Score=263.71 Aligned_cols=153 Identities=25% Similarity=0.206 Sum_probs=144.1
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCC-----CCCcceEecCCCCcccccc
Q 016563 207 ELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR-----MAFNPVVGGGPNAAVIHYS 281 (387)
Q Consensus 207 ~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~-----~~~~~ivasG~~a~~~H~~ 281 (387)
++++|||++||++||+|+++++++++.+++.++||+||.||++.+.+.+.+.|+.. ..|++.+++|.|...+|+.
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~~~h~~ 85 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCISVNEEVAHGI 85 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEecCCCeeEecC
Confidence 34689999999999999999999999999999999999999999999999999863 3577788889999999999
Q ss_pred CCCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 016563 282 RNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKG 360 (387)
Q Consensus 282 ~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~ 360 (387)
|++++|++||+|++|+|+.|+||++|++|||++ |+++++|+++|++++++++++++++|||++++||++++++.+++.
T Consensus 86 p~~~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~v-G~~~~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~ 163 (255)
T PRK12896 86 PGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAV-GPVSEEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKN 163 (255)
T ss_pred CCCccCCCCCEEEEEEeEEECcEEEeeEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999998 999999999999999999999999999999999999999998873
No 18
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00 E-value=1.6e-33 Score=262.05 Aligned_cols=167 Identities=23% Similarity=0.263 Sum_probs=151.6
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCC-----CCCCcceEecCCCCccccccCC
Q 016563 209 RWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ-----RMAFNPVVGGGPNAAVIHYSRN 283 (387)
Q Consensus 209 R~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~-----~~~~~~ivasG~~a~~~H~~~~ 283 (387)
-+|||++||++||+|+++++++++++++.++||+||.||++.++..+.+.|+. ..+|++++.+|.|+..+|+.|+
T Consensus 3 ~~iKs~~Ei~~~r~A~~i~~~~~~~a~~~i~pG~se~ela~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~h~~~~ 82 (252)
T PRK05716 3 ITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTSVNEVVCHGIPS 82 (252)
T ss_pred eeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHCCCEecccCCCCCCcCeEecccceeecCCCC
Confidence 36999999999999999999999999999999999999999999999999874 2467778899999999999999
Q ss_pred CCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHh
Q 016563 284 DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKE 363 (387)
Q Consensus 284 ~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~ 363 (387)
+++|++||+|++|+|+.|+||++|++|||++ |+++++|+++|++++++++++++++|||++++||++++++.+++.
T Consensus 83 ~~~l~~Gd~v~id~g~~~~gY~~d~~RT~~v-G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~--- 158 (252)
T PRK05716 83 DKVLKEGDIVNIDVTVIKDGYHGDTSRTFGV-GEISPEDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAE--- 158 (252)
T ss_pred CcccCCCCEEEEEEEEEECCEEEEeEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc---
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999999998873
Q ss_pred cCccCCCCCCccccccccCCCCC
Q 016563 364 IGIVNSDGTDPYNELNPTSIGDN 386 (387)
Q Consensus 364 ~g~~~~~~~~~~~~~~~H~iGH~ 386 (387)
|+.. ...+++|++|+.
T Consensus 159 -g~~~------~~~~~GHgiG~~ 174 (252)
T PRK05716 159 -GFSV------VREYCGHGIGRK 174 (252)
T ss_pred -CCee------ecCccccccCCc
Confidence 3321 234677777764
No 19
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=5.5e-33 Score=270.42 Aligned_cols=171 Identities=17% Similarity=0.202 Sum_probs=156.2
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCC-----CCCcceEecCCCCcccc
Q 016563 205 THELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR-----MAFNPVVGGGPNAAVIH 279 (387)
Q Consensus 205 i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~-----~~~~~ivasG~~a~~~H 279 (387)
+.+.|+|||++||+.||+|++++.++++.+++.++||+||.||++.++..+.++|+.. .+|+..+.+|.|..++|
T Consensus 131 ~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irpGvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svcts~N~~i~H 210 (396)
T PLN03158 131 LQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICH 210 (396)
T ss_pred cccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCccccccccCCCceeeecccccccC
Confidence 3466999999999999999999999999999999999999999999999999998764 35788899999999999
Q ss_pred ccCCCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016563 280 YSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK 359 (387)
Q Consensus 280 ~~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~ 359 (387)
+.|++++|++||+|++|+|+.|+||++|++|||+| |+++++|+++|++++++++++++++|||++++||++++++.+.+
T Consensus 211 gip~~r~L~~GDiV~iDvg~~~~GY~aD~tRT~~V-G~~~~e~~~l~e~~~eal~~aI~~vkPGv~~~dI~~~i~~~~~~ 289 (396)
T PLN03158 211 GIPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFV-GNVDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATM 289 (396)
T ss_pred CCCCCccCCCCCEEEEEEeEEECCEEEeEEeEEEc-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999999998876
Q ss_pred HHHhcCccCCCCCCccccccccCCCCC
Q 016563 360 GLKEIGIVNSDGTDPYNELNPTSIGDN 386 (387)
Q Consensus 360 ~l~~~g~~~~~~~~~~~~~~~H~iGH~ 386 (387)
.|+. .+..+++|+||+.
T Consensus 290 ----~G~~------~v~~~~GHGIG~~ 306 (396)
T PLN03158 290 ----SGLS------VVKSYCGHGIGEL 306 (396)
T ss_pred ----cCCC------ccCCccCCccccc
Confidence 3442 2356778888864
No 20
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=100.00 E-value=1.9e-32 Score=247.37 Aligned_cols=157 Identities=29% Similarity=0.485 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccccCCCCccCCCCEEEEE
Q 016563 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMD 296 (387)
Q Consensus 217 I~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~~~~~~~l~~Gd~vlvD 296 (387)
|+.||+|+++++.++.++.+.++||+||.||++.++..+.+.|+++.+|+++|++|.|+..+|+.|+++++++||+|++|
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~~~~~~~v~~g~~~~~~h~~~~~~~l~~gd~v~id 80 (208)
T cd01092 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPSFDTIVASGPNSALPHGVPSDRKIEEGDLVLID 80 (208)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCCCCCCCcEEEECccccccCCCCCCcCcCCCCEEEEE
Confidence 68999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCccCCCCCCccc
Q 016563 297 VGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYN 376 (387)
Q Consensus 297 ~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~g~~~~~~~~~~~ 376 (387)
+|+.|+||++|++|||++ |+++++|+++|++++++++++++++|||++++||++++.+.+++. ++.
T Consensus 81 ~g~~~~gy~~d~~RT~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~-------------g~~ 146 (208)
T cd01092 81 FGAIYDGYCSDITRTVAV-GEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEA-------------GYG 146 (208)
T ss_pred eeeeECCEeccceeEEEC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHc-------------Ccc
Confidence 999999999999999998 899999999999999999999999999999999999999999873 456
Q ss_pred cccccCCCCCC
Q 016563 377 ELNPTSIGDNY 387 (387)
Q Consensus 377 ~~~~H~iGH~l 387 (387)
++|+|+.||++
T Consensus 147 ~~~~~~~Gh~i 157 (208)
T cd01092 147 EYFIHRTGHGV 157 (208)
T ss_pred ccCCCCCcccc
Confidence 78899999975
No 21
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=99.97 E-value=6.5e-31 Score=237.33 Aligned_cols=155 Identities=26% Similarity=0.433 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HHHcCCCCCCCcceEecCCCCccccccCCCCccCCCCEEEEE
Q 016563 218 KLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYE-CKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMD 296 (387)
Q Consensus 218 ~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~-~~~~G~~~~~~~~ivasG~~a~~~H~~~~~~~l~~Gd~vlvD 296 (387)
|+||+|+++++++++++++.++||+||.||++.+... +.++|+...+|++++++|.|+..+|+.|++++|++||+|.+|
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~gd~v~id 80 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGEEPAFPPIVGSGPNTDLPHYTPTDRRLQEGDIVIID 80 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTTEESSESEEEECCCCGETTTBCCSSBESTTEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCCcccCCceEecCCcceecceeccceeeecCCcceee
Confidence 6899999999999999999999999999999999988 788898888999999999999999999999999999999999
Q ss_pred eceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCccCCCCCCccc
Q 016563 297 VGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYN 376 (387)
Q Consensus 297 ~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~g~~~~~~~~~~~ 376 (387)
+|+.|+||++|++||+++ | ++++|+++|+.++++++.+++.+|||++++||++++.+.+.+. ++.
T Consensus 81 ~~~~~~gy~~d~~Rt~~~-G-~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~-------------g~~ 145 (207)
T PF00557_consen 81 FGPRYDGYHADIARTFVV-G-PTPEQRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEY-------------GLE 145 (207)
T ss_dssp EEEEETTEEEEEEEEEES-S-SHHHHHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHT-------------TEG
T ss_pred ccceeeeeEeeeeeEEEE-e-ecccccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhh-------------ccc
Confidence 999999999999999987 8 9999999999999999999999999999999999999999883 344
Q ss_pred cccccCCCCCC
Q 016563 377 ELNPTSIGDNY 387 (387)
Q Consensus 377 ~~~~H~iGH~l 387 (387)
.+++|.+||++
T Consensus 146 ~~~~~~~GH~i 156 (207)
T PF00557_consen 146 EPYPHGLGHGI 156 (207)
T ss_dssp EEBTSSSEEEE
T ss_pred ceeeecccccc
Confidence 66777777753
No 22
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=99.97 E-value=8.6e-31 Score=241.25 Aligned_cols=158 Identities=16% Similarity=0.249 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hcCCC--CcHHHHHHHHHHHHHHcCCC---------CCCCcceEecCCCC-cccc
Q 016563 217 LKLMRESASIGCQALLQTML-----HSKSH--PYEGLLAAKFEYECKMRGAQ---------RMAFNPVVGGGPNA-AVIH 279 (387)
Q Consensus 217 I~~mr~A~~i~~~a~~~~~~-----~~~~G--~tE~el~a~l~~~~~~~G~~---------~~~~~~ivasG~~a-~~~H 279 (387)
+++||+|++++..+|+..+. .+.+| +||.+|+..++..+.+.+.. ..+|+|||+||.|+ ..+|
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~y~~iv~sG~~~~~l~h 80 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQLDWCYPPIIQSGGNYDLLKS 80 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhCchhhhcCCCHHHcCcccCCeEeECcCcccCCC
Confidence 46899999999999976655 78899 99999999999999988855 57999999999999 8999
Q ss_pred ccCCCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016563 280 YSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK 359 (387)
Q Consensus 280 ~~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~ 359 (387)
+.++++.+..|++|++|+|++|+|||||+||||++ | ||++|+++|++++++|+++++++|||++++|||+++++++++
T Consensus 81 ~~~s~~~~~~~~~vl~d~G~~y~gY~sditRT~~v-~-p~~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~ 158 (243)
T cd01091 81 SSSSDKLLYHFGVIICSLGARYKSYCSNIARTFLI-D-PTSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKK 158 (243)
T ss_pred CCCCccccCCCCEEEEEeCcccCCEeecceEEEEc-C-CCHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 5 799999999999999999999999999999999999999988
Q ss_pred HHHhcCccCCCCCCccccccccCCCCCC
Q 016563 360 GLKEIGIVNSDGTDPYNELNPTSIGDNY 387 (387)
Q Consensus 360 ~l~~~g~~~~~~~~~~~~~~~H~iGH~l 387 (387)
.+. ++.++|+|++||++
T Consensus 159 ~~~-----------~~~~~~~~~~GHgi 175 (243)
T cd01091 159 KKP-----------ELEPNFTKNLGFGI 175 (243)
T ss_pred hCh-----------hHHHhCcCCccccc
Confidence 411 35678999999985
No 23
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.97 E-value=3.4e-30 Score=237.75 Aligned_cols=159 Identities=26% Similarity=0.291 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCC-----CCCcceEecCCCCccccccCCCCccCCCC
Q 016563 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR-----MAFNPVVGGGPNAAVIHYSRNDQKIDDGD 291 (387)
Q Consensus 217 I~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~-----~~~~~ivasG~~a~~~H~~~~~~~l~~Gd 291 (387)
|+.||+|+++++++++++++.++||+||.||++.+.+.+.++|++. ..|++.+.+|.|+..+|+.|++++|++||
T Consensus 1 I~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~l~~Gd 80 (238)
T cd01086 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGD 80 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCCCceeCCCCCCcccCCCC
Confidence 6899999999999999999999999999999999999999999864 34666788899999999999999999999
Q ss_pred EEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCccCCCC
Q 016563 292 LVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDG 371 (387)
Q Consensus 292 ~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~g~~~~~~ 371 (387)
+|++|+|+.|+||++|++|||++ |++|++|+++|++++++++++++++|||++++||++++++.+++. |+.
T Consensus 81 ~v~id~g~~~~GY~ad~~RT~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~----G~~---- 151 (238)
T cd01086 81 IVNIDVGVELDGYHGDSARTFIV-GEVSEEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKN----GYS---- 151 (238)
T ss_pred EEEEEEEEEECCEEEEEEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc----Ccc----
Confidence 99999999999999999999998 899999999999999999999999999999999999999988873 331
Q ss_pred CCccccccccCCCCC
Q 016563 372 TDPYNELNPTSIGDN 386 (387)
Q Consensus 372 ~~~~~~~~~H~iGH~ 386 (387)
....++.|++|+.
T Consensus 152 --~~~~~~GHgiG~~ 164 (238)
T cd01086 152 --VVREFGGHGIGRK 164 (238)
T ss_pred --eecCccccCCCCc
Confidence 1235667777764
No 24
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=99.97 E-value=7.3e-30 Score=233.79 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH----------cCCCCCCCcceEecCCCCccccccC----
Q 016563 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKM----------RGAQRMAFNPVVGGGPNAAVIHYSR---- 282 (387)
Q Consensus 217 I~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~----------~G~~~~~~~~ivasG~~a~~~H~~~---- 282 (387)
++.||+|++|++++++.+++.++||+||.||+..++..+.. .|+.+.+|+++|+ .|+..+|+.|
T Consensus 1 ~~~~r~A~~I~~~~~~~~~~~i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~v~--~n~~~~H~~p~~~~ 78 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTCIS--VNNCVCHFSPLKSD 78 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeEec--cCceeecCCCCCCC
Confidence 36899999999999999999999999999998777766665 6677788988877 4888999995
Q ss_pred CCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCH-----HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016563 283 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSS-----LEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGML 357 (387)
Q Consensus 283 ~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~-----~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l 357 (387)
++++|++||+|++|+|+.|+||++|+||||++ |++++ +++++|++++++|+++++++|||++++||++++++++
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~~GY~sD~tRT~~v-G~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~ 157 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVV-GAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVI 157 (228)
T ss_pred CCcccCCCCEEEEEEEEEECCEEEEEEEEEEe-CCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 78899999999999999999999999999998 88774 8999999999999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCCCccccccccCCCCC
Q 016563 358 RKGLKEIGIVNSDGTDPYNELNPTSIGDN 386 (387)
Q Consensus 358 ~~~l~~~g~~~~~~~~~~~~~~~H~iGH~ 386 (387)
.+. |+. .+..++.|++||+
T Consensus 158 ~~~----G~~------~~~~~~~h~~g~~ 176 (228)
T cd01089 158 VDY----GCT------PVEGVLSHQLKRV 176 (228)
T ss_pred HHc----CCE------EecCccccCcCce
Confidence 873 331 2678999999985
No 25
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=99.97 E-value=3.7e-29 Score=224.66 Aligned_cols=156 Identities=25% Similarity=0.374 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccccCCCCccCCCCEEEEE
Q 016563 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMD 296 (387)
Q Consensus 217 I~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~~~~~~~l~~Gd~vlvD 296 (387)
|+.||+|++++++++..+++.++||+||.||.+.+...+.++|+ ..++.+++++|+|+..+|+.|+++++++||+|++|
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~-~~~~~~~v~~g~~~~~~h~~~~~~~i~~gd~v~~d 79 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGG-YPAGPTIVGSGARTALPHYRPDDRRLQEGDLVLVD 79 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCC-CCCCCcEEEECccccCcCCCCCCCCcCCCCEEEEE
Confidence 57899999999999999999999999999999999999999999 56788999999999999999999999999999999
Q ss_pred eceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCccCCCCCCccc
Q 016563 297 VGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYN 376 (387)
Q Consensus 297 ~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~g~~~~~~~~~~~ 376 (387)
+|+.|+||++|++|||++ |+++++|+++|+.+.++++++++.+|||+++.||++++.+.+++. ++.
T Consensus 80 ~g~~~~gy~~d~~rt~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~-------------g~~ 145 (207)
T cd01066 80 LGGVYDGYHADLTRTFVI-GEPSDEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEH-------------GLG 145 (207)
T ss_pred eceeECCCccceeceeEc-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHc-------------Ccc
Confidence 999999999999999998 899999999999999999999999999999999999999999884 333
Q ss_pred cccccCCCCCC
Q 016563 377 ELNPTSIGDNY 387 (387)
Q Consensus 377 ~~~~H~iGH~l 387 (387)
.+++|++||++
T Consensus 146 ~~~~~~~Gh~i 156 (207)
T cd01066 146 PNFGHRTGHGI 156 (207)
T ss_pred ccCCCCCcccc
Confidence 56777777764
No 26
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=99.96 E-value=9.2e-29 Score=225.32 Aligned_cols=153 Identities=23% Similarity=0.255 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHcCC-CCCCCcceEecCCCCccccccCC---CCccCCCC
Q 016563 218 KLMRESASIGCQALLQTMLHSKSH--PYEGLLAAKFEYECKMRGA-QRMAFNPVVGGGPNAAVIHYSRN---DQKIDDGD 291 (387)
Q Consensus 218 ~~mr~A~~i~~~a~~~~~~~~~~G--~tE~el~a~l~~~~~~~G~-~~~~~~~ivasG~~a~~~H~~~~---~~~l~~Gd 291 (387)
+.||.+..+ .++++.+.+.++|| +||.||++.+++.+...|. .+.+|+++|++|+|++.+|+.|+ +++|++||
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~~~~~~f~~~v~~g~n~~~~H~~p~~~~~r~l~~GD 83 (224)
T cd01085 5 AHIRDGVAL-VEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVGLSFDTISGFGPNGAIVHYSPTEESNRKISPDG 83 (224)
T ss_pred HHHHHHHHH-HHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCCCcCCCcceEEEecCccCcCCCCcCcccCcccCCCC
Confidence 356666666 47888888899999 9999999999987776653 45689999999999999999999 99999999
Q ss_pred EEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHhcCccCCC
Q 016563 292 LVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCM-PGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370 (387)
Q Consensus 292 ~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~k-pG~~~~di~~~~~~~l~~~l~~~g~~~~~ 370 (387)
+|++|+|+.|+||++|++|||++ |+++++|+++|+++++++.++++.++ ||+++.+|++++++.+.+.
T Consensus 84 ~V~iD~g~~~~gY~aD~~RT~~v-G~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~---------- 152 (224)
T cd01085 84 LYLIDSGGQYLDGTTDITRTVHL-GEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKA---------- 152 (224)
T ss_pred EEEEEeCccCCCcccccEEeecC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh----------
Confidence 99999999999999999999998 99999999999999999999999885 9999999999999998763
Q ss_pred CCCccccccccCCCCCC
Q 016563 371 GTDPYNELNPTSIGDNY 387 (387)
Q Consensus 371 ~~~~~~~~~~H~iGH~l 387 (387)
++ .|+|++||++
T Consensus 153 ---g~--~~~h~~GHgI 164 (224)
T cd01085 153 ---GL--DYGHGTGHGV 164 (224)
T ss_pred ---CC--CCCCCCCCCC
Confidence 22 3667777764
No 27
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=99.95 E-value=2.1e-27 Score=231.89 Aligned_cols=166 Identities=16% Similarity=0.245 Sum_probs=146.9
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcC----------CCCCCCcceEecCCCCccc
Q 016563 209 RWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRG----------AQRMAFNPVVGGGPNAAVI 278 (387)
Q Consensus 209 R~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G----------~~~~~~~~ivasG~~a~~~ 278 (387)
-.+|+++||+.||+|++|+.++++.+.+.++||+||.||+...+..+.+.+ ..+.+|++.|+ .|...+
T Consensus 11 ~~i~~~~eI~~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vS--vN~~v~ 88 (389)
T TIGR00495 11 YSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCIS--VNNCVG 88 (389)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEe--cCCeee
Confidence 368999999999999999999999999999999999999998877776643 45778988776 788899
Q ss_pred cccCC----CCccCCCCEEEEEeceeeCCeeeceeEEeecCCC-----CCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q 016563 279 HYSRN----DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGS-----FSSLEEALYDLILQTNKECLELCMPGTSLLQI 349 (387)
Q Consensus 279 H~~~~----~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~-----~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di 349 (387)
||.|+ +++|++||+|.||+|+.++||++|++||++| |+ ++++++++++++.+|++++++++|||++++||
T Consensus 89 H~~P~~~d~~~~Lk~GDvVkIDlG~~idGY~aD~arTv~v-G~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~~dI 167 (389)
T TIGR00495 89 HFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVV-GVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNTQV 167 (389)
T ss_pred CCCCCCCCCCcCcCCCCEEEEEEEEEECCEEEEEEEEEEE-CCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 99993 4789999999999999999999999999998 63 68899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccCCCCCCccccccccCCCCCC
Q 016563 350 HHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGDNY 387 (387)
Q Consensus 350 ~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~H~iGH~l 387 (387)
+.++++++++ +|+. .+..+..|++|+++
T Consensus 168 ~~ai~~v~~~----~G~~------~v~~~~gH~igr~~ 195 (389)
T TIGR00495 168 TEAINKVAHS----YGCT------PVEGMLSHQLKQHV 195 (389)
T ss_pred HHHHHHHHHH----cCCe------ecCCceeeccccee
Confidence 9999999887 5653 34678888888763
No 28
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=99.95 E-value=2.4e-27 Score=232.84 Aligned_cols=144 Identities=15% Similarity=0.101 Sum_probs=131.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc----CCC-CCCCcceEecCCCCccccccCC-
Q 016563 210 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR----GAQ-RMAFNPVVGGGPNAAVIHYSRN- 283 (387)
Q Consensus 210 ~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~----G~~-~~~~~~ivasG~~a~~~H~~~~- 283 (387)
..+|++||+.||+|++|+.++++.+.+.++||+||.||+..++..+++. |+. +.+|++.+ +.|...+|++|+
T Consensus 151 ~~~s~~EI~~~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~~G~~~g~aFPt~v--S~N~~aaH~tP~~ 228 (470)
T PTZ00053 151 EKLSEEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADGLKCGWAFPTGC--SLNHCAAHYTPNT 228 (470)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcCCcccCCCCcee--ecCccccCCCCCC
Confidence 3489999999999999999999999999999999999999999866543 663 67898865 478888999997
Q ss_pred --CCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016563 284 --DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK 359 (387)
Q Consensus 284 --~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~ 359 (387)
+++|++||+|.||+|+.|+||++|++||+.+ | ++++++++++.+|+++++++++||++++||..++++++++
T Consensus 229 gd~~vLk~GDvVkID~G~~vdGYiaD~ArTv~v-g---~~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevies 302 (470)
T PTZ00053 229 GDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAF-N---PKYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIES 302 (470)
T ss_pred CCCcEecCCCeEEEEEeEEECCEEEeEEEEEEe-C---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999987 4 6889999999999999999999999999999999999987
No 29
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=99.95 E-value=2.5e-27 Score=224.30 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccccCC---CCccCCC
Q 016563 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRN---DQKIDDG 290 (387)
Q Consensus 214 ~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~~~~---~~~l~~G 290 (387)
-+||+.||+|++|++++++.+++.++||++|.||++.++..+.+.|++ ++|++.++ .|...+||.|+ +++|++|
T Consensus 2 ~~~i~~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~~-~aFp~~vs--~n~~~~H~~p~~~d~~~l~~G 78 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAE-PAFPCNIS--INECAAHFTPKAGDKTVFKDG 78 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCC-CCCCccee--cCCEeeCCCCCCCcCccCCCC
Confidence 378999999999999999999999999999999999999999999987 68998876 46677899996 5689999
Q ss_pred CEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016563 291 DLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK 359 (387)
Q Consensus 291 d~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~ 359 (387)
|+|++|+|+.++||++|++||+++ |+ .++++|+++.+|++++++++|||++++||++++++.+++
T Consensus 79 DvV~iD~G~~~dGY~aD~arT~~v-G~---~~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~ 143 (295)
T TIGR00501 79 DVVKLDLGAHVDGYIADTAITVDL-GD---QYDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIES 143 (295)
T ss_pred CEEEEEEeEEECCEEEEEEEEEEe-Cc---HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998 53 378999999999999999999999999999999999987
No 30
>PRK08671 methionine aminopeptidase; Provisional
Probab=99.95 E-value=8e-27 Score=220.75 Aligned_cols=153 Identities=22% Similarity=0.261 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccccCC---CCccCCCCE
Q 016563 216 ELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRN---DQKIDDGDL 292 (387)
Q Consensus 216 EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~~~~---~~~l~~Gd~ 292 (387)
+|+.||+|++|+.++++.+++.++||+||.||++.++..+.+.|+. ++|++.++.|++ .+||.|+ +++|++||+
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~~~i~pG~se~ei~~~~~~~i~~~g~~-~afp~~vs~n~~--~~H~~p~~~d~~~l~~GDv 77 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAK-PAFPCNISINEV--AAHYTPSPGDERVFPEGDV 77 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCc-cCCCCEEeeCCC--ccCCCCCCCCCcccCCCCE
Confidence 5899999999999999999999999999999999999999999975 789988887655 5799986 678999999
Q ss_pred EEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCccCCCCC
Q 016563 293 VLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGT 372 (387)
Q Consensus 293 vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~g~~~~~~~ 372 (387)
|++|+|+.|+||++|++|||++ | ++++++|+++.++++++++++|||++++||++++++.+++ +|+..
T Consensus 78 V~iD~G~~~dGY~aD~arT~~v-G---~~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~----~G~~~---- 145 (291)
T PRK08671 78 VKLDLGAHVDGYIADTAVTVDL-G---GKYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRS----YGFKP---- 145 (291)
T ss_pred EEEEEeEEECCEEEEEEEEEEe-C---hhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----cCCcc----
Confidence 9999999999999999999998 6 4789999999999999999999999999999999998877 45421
Q ss_pred CccccccccCCCC
Q 016563 373 DPYNELNPTSIGD 385 (387)
Q Consensus 373 ~~~~~~~~H~iGH 385 (387)
+..+++|++|+
T Consensus 146 --~~~~~GHgiG~ 156 (291)
T PRK08671 146 --IRNLTGHGLER 156 (291)
T ss_pred --cCCCcccCcCC
Confidence 23467777775
No 31
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.94 E-value=5.3e-26 Score=215.14 Aligned_cols=152 Identities=22% Similarity=0.216 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccccCCC---CccCCCCEE
Q 016563 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRND---QKIDDGDLV 293 (387)
Q Consensus 217 I~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~~~~~---~~l~~Gd~v 293 (387)
++.||+|++|+.++++++++.++||+||.||++.+++.+.+.|+ +++|++.+ +.|...+||.|+. ++|++||+|
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~-~~afp~~i--s~n~~~~H~~p~~~d~~~l~~GDvV 77 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGA-GPAFPVNL--SINECAAHYTPNAGDDTVLKEGDVV 77 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCC-CCCCCcee--ccCCEeeCCCCCCCCCcccCCCCEE
Confidence 36899999999999999999999999999999999999999997 47887654 5677889999974 789999999
Q ss_pred EEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCccCCCCCC
Q 016563 294 LMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTD 373 (387)
Q Consensus 294 lvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~g~~~~~~~~ 373 (387)
.+|+|+.++||++|++||+++ |+ .++++|++++++++++++++|||++++||++++++.+++ +|+..
T Consensus 78 ~iD~G~~~dGY~sD~arT~~v-g~---~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~----~G~~~----- 144 (291)
T cd01088 78 KLDFGAHVDGYIADSAFTVDF-DP---KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIES----YGFKP----- 144 (291)
T ss_pred EEEEEEEECCEEEEEEEEEec-Ch---hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH----cCCEE-----
Confidence 999999999999999999998 53 788999999999999999999999999999999999987 35421
Q ss_pred ccccccccCCCC
Q 016563 374 PYNELNPTSIGD 385 (387)
Q Consensus 374 ~~~~~~~H~iGH 385 (387)
+..+++|++|+
T Consensus 145 -~~~~~GHgig~ 155 (291)
T cd01088 145 -IRNLTGHSIER 155 (291)
T ss_pred -eecCCccCccC
Confidence 23466777775
No 32
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.92 E-value=3.2e-24 Score=210.31 Aligned_cols=297 Identities=20% Similarity=0.218 Sum_probs=220.1
Q ss_pred ccCCCCCCCCCCcCccCCCCCCCCCHHHHHHHHHHHHHhCCCCeE-EEEecCC------cccccCCcCCCccCCCceeee
Q 016563 29 VDSGQPTPASHPQLMKEGEITPGISAEEYISRRKRLLEILPENSV-AILAAAP------EKMMTDVVPYPYRQDANYLYI 101 (387)
Q Consensus 29 ~~~~qp~~~t~p~~~~~~~~tp~i~~~ey~~R~~~L~~~m~~~~l-~il~~~~------~~~~~~d~~y~f~q~~n~~Yl 101 (387)
++--+|-.+..|.++..-+ ++|++ .......|++.|++.++ ++|++.- .+.|..|++|. +-|
T Consensus 150 iW~~rP~~~~~~v~~l~~~-~~G~~---~~~Kv~~LR~~l~~~~~~a~Vvs~LdeIaWllNLRGsDipyn----Pv~--- 218 (606)
T KOG2413|consen 150 IWGDRPERPGNPVIVLDLE-FAGLS---VDDKVDNLRKKLKEKKCDAFVVTALDEIAWLLNLRGSDIPYN----PVF--- 218 (606)
T ss_pred hhccCCccCCCceEEeecc-ccCcc---hhHHHHHHHHHHhhcCCcEEehhhHHHHHHHHhcccCcCCCC----chh---
Confidence 5667888888888887655 44654 45677999999999998 6666542 37888888883 222
Q ss_pred cCCCCCCeEEEEecCCeEEEEecCCCCccccccCccCChhhhhhHhCCccccchhhHHHHHHHhhcC--CCeEEEcCCcc
Q 016563 102 TGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGR--SSKLFHNQETA 179 (387)
Q Consensus 102 TG~~~p~~~lvi~~~~~~~l~v~~~~~~~~~w~~~~~~~~~~~~~~~~d~~~~~~~l~~~L~~~~~~--~~~I~~d~~~~ 179 (387)
-++++|+.+ +..||+...+...+.- ... ...++ +..|++.+...++.+..+ ..+|++.....
T Consensus 219 ------~sY~~it~d-ei~lfvd~~k~~~~~~-------~~~-~~~~v-~i~pY~~i~~~i~~~~~~~~~~~i~ia~~~~ 282 (606)
T KOG2413|consen 219 ------YSYAIITMD-EIFLFVDNSKLSDESK-------KHL-REDGV-EIRPYDQIWSDIKNWASAFADKKIWISPETN 282 (606)
T ss_pred ------hhhhhhhhh-hhheeecCcccCchhH-------HHH-hhCce-eeeeHHHHHHHHHHHhcccCceeEeecccce
Confidence 157788776 5789998765432211 000 11111 245677776666666543 34565543211
Q ss_pred hhhhhHHHHHHhhccCCceechHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhc----CCC--CcHHHHHHHHHH
Q 016563 180 VQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHS----KSH--PYEGLLAAKFEY 253 (387)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~~----~~G--~tE~el~a~l~~ 253 (387)
. .+...++..........|..++++|.+.|++.||.|----+.|+.+.+..+ ..| +||.+++..++.
T Consensus 283 ~-------~i~~~i~~~~~~~~~Spi~~~kAiKN~~E~~gmr~shirD~~Alve~~~wle~~~~~g~~itE~~~A~kle~ 355 (606)
T KOG2413|consen 283 Y-------GIGELIGEDHSMIDPSPISRAKAIKNDDELKGMRNSHIRDGAALVEYFAWLEKELHKGYTITEYDAADKLEE 355 (606)
T ss_pred e-------eecccccccccccccCHHHHHHHhcChHHhhhhhhcchhhHHHHHHHHHHHhhhhhcCcccchhhHHHHHHH
Confidence 1 122333444445556667899999999999999998776666776665543 456 899999999997
Q ss_pred HHH-HcCCCCCCCcceEec-CCCCccccccCC---CCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHH
Q 016563 254 ECK-MRGAQRMAFNPVVGG-GPNAAVIHYSRN---DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDL 328 (387)
Q Consensus 254 ~~~-~~G~~~~~~~~ivas-G~~a~~~H~~~~---~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~ 328 (387)
.-. .++.-+++|.+|.++ |+|++++||.|. ++.+.+.++.++|.|++|.--.+|+||||.+ |+||+++++.|..
T Consensus 356 fR~~~~~fmglSFeTIS~s~G~NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTTDvTRT~Hf-gePs~eek~~yT~ 434 (606)
T KOG2413|consen 356 FRSRQDHFMGLSFETISSSVGPNGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTRTVHF-GEPTAEEKEAYTL 434 (606)
T ss_pred HHHhhccccCcCcceeeccCCCCceeeecCCCccccceecCceEEEEccCcccccCccceeEEEec-CCCCHHHHHHHHH
Confidence 644 457778999999977 999999999995 4589999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHH
Q 016563 329 ILQTNKECLELCMP-GTSLLQIHHYSVGMLRKG 360 (387)
Q Consensus 329 v~~a~~~~i~~~kp-G~~~~di~~~~~~~l~~~ 360 (387)
|+..+-+...+.-| |+...-++..++..+++.
T Consensus 435 VLkGhi~la~~vFP~~t~g~~lD~laR~~LW~~ 467 (606)
T KOG2413|consen 435 VLKGHIALARAVFPKGTKGSVLDALARSALWKA 467 (606)
T ss_pred HHHhhhHhhhcccCCCCCcchhHHHHHHHHHhh
Confidence 99999998888876 889999999999999984
No 33
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.3e-22 Score=184.57 Aligned_cols=164 Identities=24% Similarity=0.279 Sum_probs=143.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCC-----CCCcceEecCCCCccccccCC-C
Q 016563 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR-----MAFNPVVGGGPNAAVIHYSRN-D 284 (387)
Q Consensus 211 iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~-----~~~~~ivasG~~a~~~H~~~~-~ 284 (387)
+||++||+.||+||+|+.++++.+.+.++||+|-.||....+..++++|+.. ..|+--++..-|-...|+.|+ +
T Consensus 5 ikt~~eiek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~d~ 84 (255)
T COG0024 5 IKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPGDK 84 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCCCC
Confidence 8999999999999999999999999999999999999999999999765532 123333555678888999998 5
Q ss_pred CccCCCCEEEEEeceeeCCeeeceeEEeecCCCCC-HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHh
Q 016563 285 QKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFS-SLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKE 363 (387)
Q Consensus 285 ~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s-~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~ 363 (387)
++|++||+|.||+|+.++||++|.++|+.| |+.+ +..++|.+++.++..++++.+|||+++.||-++.++++++
T Consensus 85 ~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~v-g~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~---- 159 (255)
T COG0024 85 KVLKEGDIVKIDVGAHIDGYIGDTAITFVV-GEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAES---- 159 (255)
T ss_pred cccCCCCEEEEEEEEEECCeeeeEEEEEEC-CCCChHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH----
Confidence 689999999999999999999999999999 7555 5777799999999999999999999999999999998874
Q ss_pred cCccCCCCCCccccccccCCCC
Q 016563 364 IGIVNSDGTDPYNELNPTSIGD 385 (387)
Q Consensus 364 ~g~~~~~~~~~~~~~~~H~iGH 385 (387)
.||. ..+.|.+|++|.
T Consensus 160 ~G~~------vVr~~~GHgig~ 175 (255)
T COG0024 160 RGFS------VVRNLTGHGIGR 175 (255)
T ss_pred cCCE------EeecccCCccCc
Confidence 5653 357899999985
No 34
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This N-terminal domain is associated with N-terminal region of aminopeptidase P (X-Pro aminopeptidase I and II, 3.4.11.9 from EC) and related sequences. It is not found associated with methionyl aminopeptidase 1 (IPR002467 from INTERPRO) or methionyl aminopeptidase 2 (IPR002468 from INTERPRO) families. The domain is structurally very similar [] to the creatinase N-terminal domain (IPR000587 from INTERPRO), however, little or no sequence similarity exists between the two domains. The sequences belong to MEROPS peptidase family M24B, clan MG.; GO: 0004177 aminopeptidase activity, 0030145 manganese ion binding; PDB: 3IG4_B 2OKN_A 2IW2_B 1WBQ_A 2BH3_A 1WLR_A 2V3Z_A 1W2M_B 2BWT_A 2BWW_A ....
Probab=99.90 E-value=2e-24 Score=180.74 Aligned_cols=126 Identities=38% Similarity=0.739 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecCCcccccCCcCCCccCCCceeeecCCCCCCeEEEE-ecC-CeEEEEecCCCCc
Q 016563 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVL-SHE-CGLCMFMPETSAH 129 (387)
Q Consensus 52 i~~~ey~~R~~~L~~~m~~~~l~il~~~~~~~~~~d~~y~f~q~~n~~YlTG~~~p~~~lvi-~~~-~~~~l~v~~~~~~ 129 (387)
||+++|.+||++|.+.|++++++||.+++..++++|++|+|||++||+||||+++|++++|+ ..+ ++.+||+|+.++.
T Consensus 1 i~~~~~~~RR~~l~~~l~~~~~vil~~~~~~~~~~D~~y~FrQ~s~F~YLTG~~ep~~~lvl~~~~~~~~~LF~~~~d~~ 80 (134)
T PF05195_consen 1 IPAEEYAERRKKLAEKLPDNSIVILPGGPEKYRSNDIEYPFRQDSNFYYLTGFNEPDAVLVLKDGESGKSTLFVPPKDPD 80 (134)
T ss_dssp -EHHHHHHHHHHHHHHSHSSEEEEEE----EEEETTEEE-----HHHHHHH---STT-EEEEEECTTEEEEEEE----CC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEECCCeeeecCCCccccccCCcEEEEeCCCCCCEEEEEecCCCCeEEEEeCCCCcC
Confidence 57899999999999999999999999999999999999999999999999999999999999 433 5899999999999
Q ss_pred cccccCccCChhhhhhHhCCccccchhhHHHHHHHhhcCCCeEEEcCC
Q 016563 130 DVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQE 177 (387)
Q Consensus 130 ~~~w~~~~~~~~~~~~~~~~d~~~~~~~l~~~L~~~~~~~~~I~~d~~ 177 (387)
.++|+|.+.+.+.+...+++|++.+++.+.+.|.+++.+..+++++..
T Consensus 81 ~e~W~G~~~~~e~a~~~~gvd~v~~~~~l~~~l~~~~~~~~~~~~~~~ 128 (134)
T PF05195_consen 81 DEIWDGPRPGPEEAKEIYGVDEVYYIDELEEVLSELLKRSRTVYYDLG 128 (134)
T ss_dssp GHHCCSS--HHHHHHHHHT-SEEEEGGGHHHHHHHHHTTTSCEEE-TT
T ss_pred ccEECccCCCHHHHHHHhCCCEEEEHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999999999999999999888777888764
No 35
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-22 Score=182.19 Aligned_cols=165 Identities=19% Similarity=0.250 Sum_probs=151.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCC-----CCcceEecCCCCccccccCCC
Q 016563 210 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRM-----AFNPVVGGGPNAAVIHYSRND 284 (387)
Q Consensus 210 ~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~-----~~~~ivasG~~a~~~H~~~~~ 284 (387)
.|.+++||+.||+||+++.+.++.+...++||+|-.||......+..++||... .|+--+.+.-|-.+.|+.|..
T Consensus 115 ~i~~~e~ie~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviCHGIPD~ 194 (369)
T KOG2738|consen 115 KILDPEGIEGMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVICHGIPDS 194 (369)
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhcCCcCCCcccCCCchhhhcchhheeecCCCCc
Confidence 578999999999999999999999999999999999999999999999999743 566678888899999999999
Q ss_pred CccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhc
Q 016563 285 QKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEI 364 (387)
Q Consensus 285 ~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~ 364 (387)
++|++||+|-||+...++||+.|+.+||+| |+.++..+++-+...++.+.+|+.||||+++.+|-+.+.+...+ .
T Consensus 195 RpLedGDIvNiDVtvY~~GyHGDlneTffv-G~Vde~~k~LVkvT~EcL~kaI~~~kpGv~freiG~iI~kha~~----~ 269 (369)
T KOG2738|consen 195 RPLEDGDIVNIDVTVYLNGYHGDLNETFFV-GNVDEKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATK----N 269 (369)
T ss_pred CcCCCCCEEeEEEEEEeccccCccccceEe-eccCHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhhh----c
Confidence 999999999999999999999999999998 99999999999999999999999999999999999988777655 4
Q ss_pred CccCCCCCCccccccccCCCC
Q 016563 365 GIVNSDGTDPYNELNPTSIGD 385 (387)
Q Consensus 365 g~~~~~~~~~~~~~~~H~iGH 385 (387)
|+. .++.|++|++|-
T Consensus 270 g~s------VVr~ycGHGig~ 284 (369)
T KOG2738|consen 270 GYS------VVRSYCGHGIGR 284 (369)
T ss_pred Cce------eehhhhcccccc
Confidence 552 357899999984
No 36
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=99.88 E-value=7.2e-22 Score=196.31 Aligned_cols=254 Identities=17% Similarity=0.212 Sum_probs=180.1
Q ss_pred ceeeecCCCCCCeEEEEecCCeEEEEecCCCCcc-ccccCccCChhhh--hhHhCCcc----ccchhhHHHHHHHhhcCC
Q 016563 97 NYLYITGCQQPGGVAVLSHECGLCMFMPETSAHD-VIWKGQIAGVDAA--PETFKADK----AYPMSKIQEILPDMIGRS 169 (387)
Q Consensus 97 n~~YlTG~~~p~~~lvi~~~~~~~l~v~~~~~~~-~~w~~~~~~~~~~--~~~~~~d~----~~~~~~l~~~L~~~~~~~ 169 (387)
-+.||.||+.|++++|+.++ ..++++..+.+.. ..-.+..-..+.+ ..++-.+. ...++.+.++++. .+
T Consensus 19 L~~WLlGYEfpdTilv~~~~-~i~iltSkkKa~~l~~~~~~~~~~~~~~~v~llvR~k~d~n~~~fdkii~~ik~---~g 94 (960)
T KOG1189|consen 19 LFTWLLGYEFPDTILVLCKD-KIYILTSKKKAEFLQKVTNLAQSSEGKPTVNLLVRDKNDDNKGLFDKIIKAIKS---AG 94 (960)
T ss_pred HHHHHhccccCceEEEEecC-cEEEEecchhHHHHHhhcccccCcccCcceEEEecccCccccccHHHHHHHHHh---cC
Confidence 36799999999999999876 4566666543311 0000000000111 11111111 1223444444443 46
Q ss_pred CeEEEcCCcchhhhhHHHHHHhhc--cCCceechHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH-----HhcCC--
Q 016563 170 SKLFHNQETAVQTYTNLEAFQKAD--FYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTM-----LHSKS-- 240 (387)
Q Consensus 170 ~~I~~d~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~-----~~~~~-- 240 (387)
++||+-... ..+-.....+.+.+ .+.+.+|++..+..+-+||++.||+.||+|+.++...|...+ ..+..
T Consensus 95 k~vGvf~ke-~~~G~F~~~W~~~l~~~~fn~vDis~~ls~l~avKDd~Ei~~irksa~~s~~vm~k~~~~~~~~aiD~ek 173 (960)
T KOG1189|consen 95 KKVGVFAKE-KFQGEFMESWNKRLEAGGFNKVDISLGLSKLFAVKDDEEIANIRKSAAASSAVMNKYLVDELVEAIDEEK 173 (960)
T ss_pred Ceeeeeccc-ccchhHHHHHHHHhhhcCCceeehhhhhhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 678865421 11111222222222 356789999999999999999999999999999999998554 33433
Q ss_pred CCcHHHHHHHHHHHHHHc----CCC----CCCCcceEecCCCCcc-ccccCCCCccCCCCEEEEEeceeeCCeeeceeEE
Q 016563 241 HPYEGLLAAKFEYECKMR----GAQ----RMAFNPVVGGGPNAAV-IHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRT 311 (387)
Q Consensus 241 G~tE~el~a~l~~~~~~~----G~~----~~~~~~ivasG~~a~~-~H~~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT 311 (387)
-+|..-|...++..+... |.. .+.|+||++||.+... +....++..| + .|+..+|.+|++|||.++||
T Consensus 174 kvthskLsD~~e~~I~~~k~s~~l~~~~~d~cY~PIiqSGg~ydlk~sa~s~~~~L--~-~I~cs~G~RynsYCSNv~RT 250 (960)
T KOG1189|consen 174 KVTHSKLSDLMESAIEDKKYSPGLDPDLLDMCYPPIIQSGGKYDLKPSAVSDDNHL--H-VILCSLGIRYNSYCSNVSRT 250 (960)
T ss_pred hhhhHHHHHHHHHHhhccccCcccCccccccccChhhhcCCccccccccccccccc--c-eEEeeccchhhhhhccccce
Confidence 357777888887776543 322 3689999999988766 6666677777 4 99999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 016563 312 WPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKG 360 (387)
Q Consensus 312 ~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~ 360 (387)
+.+ .||.+|.+.|+.++.+|++++++||||+..+|||.++.+++++.
T Consensus 251 ~Li--dpssemq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~ 297 (960)
T KOG1189|consen 251 YLI--DPSSEMQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKN 297 (960)
T ss_pred eee--cchHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence 998 89999999999999999999999999999999999999999875
No 37
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.76 E-value=1.7e-17 Score=162.34 Aligned_cols=295 Identities=17% Similarity=0.189 Sum_probs=188.2
Q ss_pred CCHHHHHHHHHHHHHhCCCC-----eEEEEecCCcccccCCcCCCccCCCc-eeeecCCCCCCeEEEEecCCeEEEEecC
Q 016563 52 ISAEEYISRRKRLLEILPEN-----SVAILAAAPEKMMTDVVPYPYRQDAN-YLYITGCQQPGGVAVLSHECGLCMFMPE 125 (387)
Q Consensus 52 i~~~ey~~R~~~L~~~m~~~-----~l~il~~~~~~~~~~d~~y~f~q~~n-~~YlTG~~~p~~~lvi~~~~~~~l~v~~ 125 (387)
|....|..|..-|+..+.+. ++.++++. +.| ..||+.++- +.||-||+.|.+++++.+ +...+.+..
T Consensus 6 ide~~F~kR~~~l~~~~ne~dG~p~sllv~lG~-----s~d-~npyqk~taLh~wLLgYEFP~Tli~l~~-~~~~I~ts~ 78 (1001)
T COG5406 6 IDEERFEKRSRDLRKHLNEEDGGPDSLLVMLGK-----SQD-VNPYQKNTALHIWLLGYEFPETLIILDD-VCTAITTSK 78 (1001)
T ss_pred ccHHHHHHHHHHHHHhhhhccCCCceEEEEecc-----ccc-cChhhhhhHHHHHHHhccCcceEEEEec-ceEEEEech
Confidence 55678999999999999432 34566664 223 345565555 569999999998777765 445555554
Q ss_pred CCCcc---ccccCccCChhhhhhHhCCccccchhhHHHHHHHh----hcCCCeEEEcCCcchhh------h-hHHHHHHh
Q 016563 126 TSAHD---VIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDM----IGRSSKLFHNQETAVQT------Y-TNLEAFQK 191 (387)
Q Consensus 126 ~~~~~---~~w~~~~~~~~~~~~~~~~d~~~~~~~l~~~L~~~----~~~~~~I~~d~~~~~~~------~-~~~~~l~~ 191 (387)
..+.. .+.+.+.. ......++. ....+...++.++. ...++.||.-.. +... + ..++..++
T Consensus 79 ~kA~~lqk~l~~~~~~--~v~~n~~~r--~k~~eenkKlF~~~i~~i~s~~k~VG~f~k-D~~qgkfi~ew~~i~e~vk~ 153 (1001)
T COG5406 79 KKAILLQKGLAETSLN--IVVRNKDNR--TKNMEENKKLFKGSIYVIGSENKIVGDFCK-DVLQGKFINEWDSIFEPVKS 153 (1001)
T ss_pred hhHHHHHhhhccCcch--hhhhhhhhc--ccCHHHHHHHHhhhheecccCCcccCccch-hhhhcccccccchhhhhhhh
Confidence 43211 01111100 001111111 11122222222222 223455664321 1100 0 11233332
Q ss_pred hccCCceechHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH---HHhcCCC---CcHHHHHHHHHHH-----HHH---
Q 016563 192 ADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQT---MLHSKSH---PYEGLLAAKFEYE-----CKM--- 257 (387)
Q Consensus 192 ~~~~~~~~~~~~~i~~lR~iKs~~EI~~mr~A~~i~~~a~~~~---~~~~~~G---~tE~el~a~l~~~-----~~~--- 257 (387)
..+.+|++.-+.++-.+|+..||+.+|.+++.++..|.-. |..+-.| +|..-+...++.. +.+
T Consensus 154 ---efN~~DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s 230 (1001)
T COG5406 154 ---EFNASDVSLGLSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKS 230 (1001)
T ss_pred ---hcchhhhhhhhhHHhccccHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhhccchHHHHhhhhcchhhhhhhcC
Confidence 4577899999999999999999999999999999888732 3222111 3444444444431 111
Q ss_pred --cCC-----CCCCCcceEecCCCCcc-ccccCCCCccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHH
Q 016563 258 --RGA-----QRMAFNPVVGGGPNAAV-IHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLI 329 (387)
Q Consensus 258 --~G~-----~~~~~~~ivasG~~a~~-~H~~~~~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v 329 (387)
.|- -...|.||++||..-.. |.....++.+ .||.|++.+|.+|+||||.|+||+.+ +|+.+|.+-|+-+
T Consensus 231 ~~l~~~~~d~lew~ytpiiqsg~~~Dl~psa~s~~~~l-~gd~vl~s~GiRYn~YCSn~~RT~l~--dp~~e~~~Ny~fl 307 (1001)
T COG5406 231 LKLGDIDLDQLEWCYTPIIQSGGSIDLTPSAFSFPMEL-TGDVVLLSIGIRYNGYCSNMSRTILT--DPDSEQQKNYEFL 307 (1001)
T ss_pred ccccccchhhhhhhcchhhccCceeecccccccCchhh-cCceEEEEeeeeeccccccccceEEe--CCchHhhhhHHHH
Confidence 111 02468899999987654 4444444444 37899999999999999999999987 8999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhc
Q 016563 330 LQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEI 364 (387)
Q Consensus 330 ~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~ 364 (387)
+.+|+..+..||||...++||..+.+++.+...++
T Consensus 308 ~~lQk~i~~~~rpG~~~g~iY~~~~~yi~~~~pel 342 (1001)
T COG5406 308 YMLQKYILGLVRPGTDSGIIYSEAEKYISSNGPEL 342 (1001)
T ss_pred HHHHHHHHhhcCCCCCchhHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999998754443
No 38
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=99.35 E-value=6.6e-13 Score=110.54 Aligned_cols=127 Identities=20% Similarity=0.277 Sum_probs=90.5
Q ss_pred HHHHHHHhCCCCeE-EEEecCCcccccCCcCCCccCCCceeeecCC---CCCCeEEE-EecCCeEEEEecCCCCcccccc
Q 016563 60 RRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGC---QQPGGVAV-LSHECGLCMFMPETSAHDVIWK 134 (387)
Q Consensus 60 R~~~L~~~m~~~~l-~il~~~~~~~~~~d~~y~f~q~~n~~YlTG~---~~p~~~lv-i~~~~~~~l~v~~~~~~~~~w~ 134 (387)
|++||++.|+++|+ ++++++ +.|++||||| ....++++ |++++. ++|+|..+..... .
T Consensus 1 Rl~rl~~~m~~~gid~lll~~---------------~~ni~YltG~~~~~~~~~~~l~i~~~~~-~l~~~~~~~~~~~-~ 63 (132)
T PF01321_consen 1 RLERLRAAMAEAGIDALLLTS---------------PENIRYLTGFRWQPGERPVLLVITADGA-VLFVPKGEYERAA-E 63 (132)
T ss_dssp HHHHHHHHHHHTT-SEEEEES---------------HHHHHHHHS--ST-TSSEEEEEEESSSE-EEEEEGGGHHHHH-H
T ss_pred CHHHHHHHHHHCCCCEEEEcC---------------hhhceEecCCCcCCCcceEEEEecccCc-EEEeccccHHHHH-H
Confidence 89999999999999 677765 5999999999 55555555 889887 8999855431100 0
Q ss_pred CccCChhhhhhHhCCccccchhhHHHHHHHhhcCCCeEEEcCCcchhhhhHHHHHHhhccCCceechHHHHHHhhcc
Q 016563 135 GQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWV 211 (387)
Q Consensus 135 ~~~~~~~~~~~~~~~d~~~~~~~l~~~L~~~~~~~~~I~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~lR~i 211 (387)
.... ..++...+ .+.+.+.+.|++.+...++||+|.+. +++..++.|++.+|+.++++++++|.++|+|
T Consensus 64 ~~~~----~~~v~~~~--~~~~~~~~~l~~~~~~~~~igve~~~--~~~~~~~~l~~~~~~~~~v~~~~~i~~~R~I 132 (132)
T PF01321_consen 64 ESAP----DDEVVEYE--DPYEAIAEALKKLGPEGKRIGVEPDS--LSAAEYQRLQEALPGAEFVDASPLIEELRMI 132 (132)
T ss_dssp HHTT----SSEEEEES--THHHHHHHHHHHHTTTTSEEEEETTT--SBHHHHHHHHHHSTTSEEEEEHHHHHHHHTS
T ss_pred hhcC----CceEEEEe--cccchHHHHHHHhCCCCCEEEEcCCc--ChHHHHHHHHHhCCCCEEEEcHHHHHHcCcC
Confidence 0000 00111111 14677888999887777899999753 6777889999999999999999999999987
No 39
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=99.19 E-value=4.1e-10 Score=104.96 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=125.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHc----------CCCCCCCcceEecCCCCcccc
Q 016563 210 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR----------GAQRMAFNPVVGGGPNAAVIH 279 (387)
Q Consensus 210 ~iKs~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~----------G~~~~~~~~ivasG~~a~~~H 279 (387)
.|-++.-+..+|.|++|+.+++..+.+.++||.+-.||+..-+..+.+. --.+.+||+-+. .|-+..|
T Consensus 14 tia~~~vvtKYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfPT~Is--vnncv~h 91 (398)
T KOG2776|consen 14 TIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFPTSIS--VNNCVCH 91 (398)
T ss_pred ccccHHHHhhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhccccccceec--ccceeec
Confidence 4566777889999999999999999999999999999998776655432 113568988666 5667799
Q ss_pred ccCC----CCccCCCCEEEEEeceeeCCeeeceeEEeecCC----CCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 016563 280 YSRN----DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCG----SFSSLEEALYDLILQTNKECLELCMPGTSLLQIHH 351 (387)
Q Consensus 280 ~~~~----~~~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G----~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~ 351 (387)
+.|- +-.|++||+|.||+|+.++||.+-++-|++|.- +.+.+..++..++..|.++++.+++||.+-.+|-+
T Consensus 92 ~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa~rllkpgn~n~~vT~ 171 (398)
T KOG2776|consen 92 FSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAALRLLKPGNTNTQVTR 171 (398)
T ss_pred cCcCCCCCcccccCCCEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchhHHHHHHHHHHHHHHHHhCCCCCCchhhH
Confidence 9882 458999999999999999999999999998831 24678899999999999999999999999999998
Q ss_pred HHHHHHHH
Q 016563 352 YSVGMLRK 359 (387)
Q Consensus 352 ~~~~~l~~ 359 (387)
+..+....
T Consensus 172 ~i~k~aas 179 (398)
T KOG2776|consen 172 AIVKTAAS 179 (398)
T ss_pred HHHHHHHH
Confidence 88887765
No 40
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=99.07 E-value=3.7e-09 Score=96.31 Aligned_cols=165 Identities=16% Similarity=0.117 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH----HcCCC-CCCCcceEecCCCCccccccCCC---C
Q 016563 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECK----MRGAQ-RMAFNPVVGGGPNAAVIHYSRND---Q 285 (387)
Q Consensus 214 ~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~----~~G~~-~~~~~~ivasG~~a~~~H~~~~~---~ 285 (387)
.....-+|+|+.+..++-..+...++||||-.||...++...+ ++|.. +.+||+-++ -|.+..||+||. .
T Consensus 82 ~~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~aGi~FPtG~S--lN~cAAHyTpNaGd~t 159 (397)
T KOG2775|consen 82 SDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLNAGIGFPTGCS--LNHCAAHYTPNAGDKT 159 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhccccccccCCCccc--ccchhhhcCCCCCCce
Confidence 3445778999999999999999999999999999999996544 34543 568876444 577779999973 3
Q ss_pred ccCCCCEEEEEeceeeCCeeeceeEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcC
Q 016563 286 KIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIG 365 (387)
Q Consensus 286 ~l~~Gd~vlvD~g~~~~GY~sDitRT~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l~~~g 365 (387)
+|+.+|++.||+|...+|-.-|-.-|+.++. ....+..+|.++...+|+..-..+.++||-+++++++...--+
T Consensus 160 VLqydDV~KiDfGthi~GrIiDsAFTv~F~p----~~d~Ll~AvreaT~tGIkeaGiDvRlcdiG~aiqEVmeSyEvE-- 233 (397)
T KOG2775|consen 160 VLKYDDVMKIDFGTHIDGRIIDSAFTVAFNP----KYDPLLAAVREATNTGIKEAGIDVRLCDIGEAIQEVMESYEVE-- 233 (397)
T ss_pred eeeecceEEEeccccccCeEeeeeeEEeeCc----cccHHHHHHHHHHhhhhhhcCceeeehhhhHHHHHHhhheEEE--
Confidence 8999999999999999999999999987644 4455889999999999999999999999999999999863111
Q ss_pred ccCCCCC-CccccccccCCCCC
Q 016563 366 IVNSDGT-DPYNELNPTSIGDN 386 (387)
Q Consensus 366 ~~~~~~~-~~~~~~~~H~iGH~ 386 (387)
|...... ..++.+.+|+|+-+
T Consensus 234 i~Gk~~~VKpIrnLnGHSI~~y 255 (397)
T KOG2775|consen 234 INGKTYQVKPIRNLNGHSIAQY 255 (397)
T ss_pred eCCceecceeccccCCCcccce
Confidence 1111100 13678888888754
No 41
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=97.33 E-value=0.00022 Score=61.57 Aligned_cols=146 Identities=15% Similarity=0.149 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCe------E---EEEecCCcccccCCcCCCccCCCceeeecCCCCCCeEEEEecCCeEEEE
Q 016563 52 ISAEEYISRRKRLLEILPENS------V---AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLCMF 122 (387)
Q Consensus 52 i~~~ey~~R~~~L~~~m~~~~------l---~il~~~~~~~~~~d~~y~f~q~~n~~YlTG~~~p~~~lvi~~~~~~~l~ 122 (387)
|..+.|.+|+.+|.+.+++.. + +|++|. .+++.+|. ...+-..||.||+.|+++++++++ +.+++
T Consensus 1 iD~~~F~~RL~~L~~~W~~~~~~~~~~~dal~i~~G~----~~e~~~Y~-Ks~aLq~WLlGYEfpdTiiv~tk~-~i~~l 74 (163)
T PF14826_consen 1 IDKETFHKRLKRLYSSWKEHKDDLWGGADALVIAVGK----ADEDNPYS-KSTALQTWLLGYEFPDTIIVFTKK-KIHFL 74 (163)
T ss_dssp --HHHHHHHHHHHHHHHHCCCHHTSTT-SEEEEEE-S------TTSTT--HHHHHHHHHHSS--SSEEEEEETT-EEEEE
T ss_pred CCHHHHHHHHHHHHHHHhccCccccCCCCEEEEEeCC----cccCccch-hHHHHHHHHhcccHhhhhhhhcCC-EEEEE
Confidence 356789999999999998764 3 455553 23455553 223446799999999999999987 78888
Q ss_pred ecCCCCcc-ccccCccC-ChhhhhhHh--C-CccccchhhHHHHHHHhhcCCCeEEEcCCcchhhhhHHHHHHhhcc--C
Q 016563 123 MPETSAHD-VIWKGQIA-GVDAAPETF--K-ADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADF--Y 195 (387)
Q Consensus 123 v~~~~~~~-~~w~~~~~-~~~~~~~~~--~-~d~~~~~~~l~~~L~~~~~~~~~I~~d~~~~~~~~~~~~~l~~~~~--~ 195 (387)
++.+.... +.-..... +......+. + .|....-+.+.+++..+-..+++||+-... ...-...+...+.+. +
T Consensus 75 tS~KKa~~L~~l~~~~~~~~~~~v~ll~R~k~d~~~~~~~f~kl~~~ik~~g~~vG~~~Kd-~~~G~f~~~w~~~l~~~~ 153 (163)
T PF14826_consen 75 TSKKKAKFLEPLKKPAKEGGSIPVELLVRNKKDPEKNKANFEKLIEAIKKAGKKVGVLAKD-KFEGKFVDEWKEALKKSG 153 (163)
T ss_dssp EEHHHHHCCCCHCCCTTTT-SSEEEEEEE-TT-HHHHHHHHHHHHHHHHCCTSEEEE-TT-----SHHHHHHHHHHCHHC
T ss_pred eCHHHHHHHHHHhhccccCCCceEEEEEeCCCCccchHHHHHHHHHHHHhcCCeEeEecCC-CCCCchHHHHHHHHhhcC
Confidence 87654321 11110000 000001111 1 111122334555554444467889976532 111122333343332 4
Q ss_pred CceechHHH
Q 016563 196 GAVRNLSRL 204 (387)
Q Consensus 196 ~~~~~~~~~ 204 (387)
.+.+|++.-
T Consensus 154 ~~~vDvs~~ 162 (163)
T PF14826_consen 154 FEKVDVSSG 162 (163)
T ss_dssp SEEEE-HHH
T ss_pred CceeeccCC
Confidence 577887754
No 42
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=94.81 E-value=0.43 Score=41.98 Aligned_cols=95 Identities=17% Similarity=0.079 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCcccccc-----CCCCccCCCCE
Q 016563 218 KLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYS-----RNDQKIDDGDL 292 (387)
Q Consensus 218 ~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~~-----~~~~~l~~Gd~ 292 (387)
+.++++.+.+.+++..+++.++||++-.||...+...+.+.|... .+...+.-|- ....|-. .++.+|++|-+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~-~~~~~~Gh~i-G~~~~e~~~~~~~~~~~l~~gmv 179 (207)
T cd01066 102 DEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGP-NFGHRTGHGI-GLEIHEPPVLKAGDDTVLEPGMV 179 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccc-cCCCCCcccc-CcccCCCCCcCCCCCCCcCCCCE
Confidence 467888999999999999999999999999999999999998741 1111111111 1123322 24679999999
Q ss_pred EEEEeceeeC-CeeeceeEEeec
Q 016563 293 VLMDVGCELH-GYVSDMTRTWPP 314 (387)
Q Consensus 293 vlvD~g~~~~-GY~sDitRT~~v 314 (387)
+.++.+.... ++..-+.-|+.|
T Consensus 180 ~~iep~~~~~~~~g~~~ed~v~v 202 (207)
T cd01066 180 FAVEPGLYLPGGGGVRIEDTVLV 202 (207)
T ss_pred EEECCEEEECCCcEEEeeeEEEE
Confidence 9999998776 578888888877
No 43
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=94.44 E-value=0.074 Score=53.98 Aligned_cols=114 Identities=12% Similarity=0.249 Sum_probs=66.2
Q ss_pred HHHHHHHhCCCCeE-EEEecCCcccccCCcCCCccCCCceeeecCCCCCCeEEEEecCCeEEEEecCCCCccccccCccC
Q 016563 60 RRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIA 138 (387)
Q Consensus 60 R~~~L~~~m~~~~l-~il~~~~~~~~~~d~~y~f~q~~n~~YlTG~~~p~~~lvi~~~~~~~l~v~~~~~~~~~w~~~~~ 138 (387)
+..++++.|+..++ +.|+.+.+.+.+.-+. ..+.-..|++||..+.+++||+.+ +..|.+. .|+
T Consensus 11 ~~~~~~~~~~~~~i~aYi~Ps~DaH~sEy~~---~~D~R~~flsGFsGsag~Avit~~-~a~lwtD-----------~RY 75 (606)
T KOG2413|consen 11 ELMRLRELMKSPPIDAYILPSTDAHQSEYIA---DRDERRAFLSGFSGSAGTAVITEE-EAALWTD-----------GRY 75 (606)
T ss_pred HHHHHHHHhcCCCceEEEccCCchhhhhhhc---chhhhhhhhcccCCCcceEEEecC-cceEEEc-----------cHH
Confidence 77889999999999 5444433333332111 113345699999999999999854 4455553 333
Q ss_pred ChhhhhhH---hC-CccccchhhHHHHHHHhhcCCCeEEEcCCcchhhhhHHHHHH
Q 016563 139 GVDAAPET---FK-ADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQ 190 (387)
Q Consensus 139 ~~~~~~~~---~~-~d~~~~~~~l~~~L~~~~~~~~~I~~d~~~~~~~~~~~~~l~ 190 (387)
-.++..+. |- .....+...+.++|.+.++..++||+|+.. .++..+..+.
T Consensus 76 ~~QA~~qld~~W~l~k~~~~~~~v~~wl~~~l~~~~~vG~Dp~L--is~~~~~~~~ 129 (606)
T KOG2413|consen 76 FQQAEQQLDSNWTLMKMGEDVPTVEEWLAKVLPEGSRVGIDPTL--ISFDAWKQLE 129 (606)
T ss_pred HHHHHhhhcccceeeeccCCCccHHHHHHHhCCCccccccCcce--echhHHHhHH
Confidence 22221111 10 011122356778888888888899999742 3344444433
No 44
>PRK05716 methionine aminopeptidase; Validated
Probab=92.93 E-value=1.1 Score=41.19 Aligned_cols=95 Identities=12% Similarity=0.091 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCC----Cccccc-c-CCCCccCCCCEE
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPN----AAVIHY-S-RNDQKIDDGDLV 293 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~----a~~~H~-~-~~~~~l~~Gd~v 293 (387)
.|++.+++.++.+++++.++||++=.||...++..+.+.|........--..|.. -.++++ . .++.+|++|.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~~~~~~~GHgiG~~~~e~p~~~~~~~~~~~~~le~Gmv~ 199 (252)
T PRK05716 120 DKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVF 199 (252)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeeecCccccccCCccCCCCccCcCCCCCCCCEecCCCEE
Confidence 4566677778888888889999999999999999999988753110000001111 111222 1 246789999999
Q ss_pred EEEeceee------------------CCeeeceeEEeec
Q 016563 294 LMDVGCEL------------------HGYVSDMTRTWPP 314 (387)
Q Consensus 294 lvD~g~~~------------------~GY~sDitRT~~v 314 (387)
.++-+... +++..-++-|+.|
T Consensus 200 ~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~V 238 (252)
T PRK05716 200 TIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAV 238 (252)
T ss_pred EEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEE
Confidence 99977643 3456667777776
No 45
>PRK08671 methionine aminopeptidase; Provisional
Probab=92.87 E-value=0.85 Score=43.27 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCC--cccccc--------CCCCccCC
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNA--AVIHYS--------RNDQKIDD 289 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a--~~~H~~--------~~~~~l~~ 289 (387)
.+++.+.+..+++.+++.++||++-.||...++..+.+.|+... ... +|..- ..+|.. .++.+|++
T Consensus 103 ~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~--~~~--~GHgiG~~~~he~p~ip~~~~~~~~~le~ 178 (291)
T PRK08671 103 YEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPI--RNL--TGHGLERYELHAGPSIPNYDEGGGVKLEE 178 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc--CCC--cccCcCCCcccCCCccCccCCCCCceeCC
Confidence 35667777788889999999999999999999999999998642 111 11111 123322 23578999
Q ss_pred CCEEEEEeceee-CCeeeceeEEeec
Q 016563 290 GDLVLMDVGCEL-HGYVSDMTRTWPP 314 (387)
Q Consensus 290 Gd~vlvD~g~~~-~GY~sDitRT~~v 314 (387)
|+++.++-+..- .|+..|-.||-..
T Consensus 179 GmV~aIEp~~t~G~G~v~~~~~~~iy 204 (291)
T PRK08671 179 GDVYAIEPFATDGEGKVVEGPEVEIY 204 (291)
T ss_pred CCEEEEcceEECCCCeEecCCceEEE
Confidence 999999976543 6888888887644
No 46
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=92.81 E-value=1.3 Score=40.74 Aligned_cols=93 Identities=11% Similarity=0.147 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEe--cCC----CCcccccc--CCCCccCCCC
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVG--GGP----NAAVIHYS--RNDQKIDDGD 291 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~iva--sG~----~a~~~H~~--~~~~~l~~Gd 291 (387)
++++.+++.++++.+++.++||++-.||...+...+.+.|.... ...+. -|- .-.++.+. .++.+|++|.
T Consensus 118 ~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~--~~~~GHgiG~~~~e~p~i~~~~~~~~~~~l~~gm 195 (247)
T TIGR00500 118 AEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVV--REYCGHGIGRKFHEEPQIPNYGKKFTNVRLKEGM 195 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec--cCccCCccCcccCCCCccCCcCcCCCCCEecCCC
Confidence 45667777888888888999999999999999999999987531 11110 111 11112221 1367899999
Q ss_pred EEEEEeceee------------------CCeeeceeEEeec
Q 016563 292 LVLMDVGCEL------------------HGYVSDMTRTWPP 314 (387)
Q Consensus 292 ~vlvD~g~~~------------------~GY~sDitRT~~v 314 (387)
++.++-|... +++..-+.-|+.|
T Consensus 196 v~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~V 236 (247)
T TIGR00500 196 VFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVI 236 (247)
T ss_pred EEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEE
Confidence 9999987644 3455667778777
No 47
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=92.59 E-value=1.8 Score=38.41 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCC-Cccccc----c-CCCCccCCCCE
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPN-AAVIHY----S-RNDQKIDDGDL 292 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~-a~~~H~----~-~~~~~l~~Gd~ 292 (387)
.+|++.+.+.++++.+++.++||++=.||...++..+.+.|... .|... .|.. +...|- . .++.+|++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~-~~~~~--~Gh~iG~~~~e~p~i~~~~~~~l~~gmv 180 (208)
T cd01092 104 ELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGE-YFIHR--TGHGVGLEVHEAPYISPGSDDVLEEGMV 180 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccc-cCCCC--CccccCcccCcCCCcCCCCCCCcCCCCE
Confidence 45678888888899999999999999999999999999999752 12111 1111 011222 2 25678999999
Q ss_pred EEEEeceeeCCe-eeceeEEeec
Q 016563 293 VLMDVGCELHGY-VSDMTRTWPP 314 (387)
Q Consensus 293 vlvD~g~~~~GY-~sDitRT~~v 314 (387)
+.++.+....|+ ..-+.-|+.|
T Consensus 181 ~~iep~~~~~~~~g~~~ed~v~v 203 (208)
T cd01092 181 FTIEPGIYIPGKGGVRIEDDVLV 203 (208)
T ss_pred EEECCeEEecCCCEEEeeeEEEE
Confidence 999987755333 3445667766
No 48
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=92.26 E-value=1.8 Score=39.49 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCC-cccccc----------CCCCccC
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNA-AVIHYS----------RNDQKID 288 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a-~~~H~~----------~~~~~l~ 288 (387)
.|++.+++.++++.+++.++||++=.||.+.++..+.+.|.... +. ...|..- ...|.. .++.+|+
T Consensus 111 ~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~-~~--~~~GHgiGl~~he~~~~~g~~~~~~~~~~Le 187 (228)
T cd01090 111 HLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRY-RT--FGYGHSFGVLSHYYGREAGLELREDIDTVLE 187 (228)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcc-cc--cccCcccccccccCCCccccccCCCCCCccC
Confidence 56778888999999999999999999999999999999986532 10 1112111 112222 2357899
Q ss_pred CCCEEEEEeceeeC----C-eeeceeEEeec
Q 016563 289 DGDLVLMDVGCELH----G-YVSDMTRTWPP 314 (387)
Q Consensus 289 ~Gd~vlvD~g~~~~----G-Y~sDitRT~~v 314 (387)
+|-++.++-+..+. | ..--++.|+.|
T Consensus 188 ~GMV~~iEP~i~~~~~~~g~gG~ried~v~V 218 (228)
T cd01090 188 PGMVVSMEPMIMLPEGQPGAGGYREHDILVI 218 (228)
T ss_pred CCCEEEECCEEeecccCCCCcEEEeeeEEEE
Confidence 99999999886542 1 12236778766
No 49
>PLN03158 methionine aminopeptidase; Provisional
Probab=91.60 E-value=1.8 Score=42.94 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCC-CCcceEecCCC----CccccccCCC--CccCCCCE
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRM-AFNPVVGGGPN----AAVIHYSRND--QKIDDGDL 292 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~-~~~~ivasG~~----a~~~H~~~~~--~~l~~Gd~ 292 (387)
.|++.+.+.++++++++.++||++=.||...++..+.+.|.... .|.. =.-|.. -.++||..++ .+|++|.+
T Consensus 252 ~~~l~e~~~eal~~aI~~vkPGv~~~dI~~~i~~~~~~~G~~~v~~~~G-HGIG~~~He~P~i~~~~~~~~~~~l~~GMV 330 (396)
T PLN03158 252 SRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVKSYCG-HGIGELFHCAPNIPHYARNKAVGVMKAGQV 330 (396)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCccCCccC-CccccccCCCCCCCcccCCCCCCEecCCcE
Confidence 46677778888999999999999999999999999999987531 1100 011111 1245665443 68999999
Q ss_pred EEEEeceee
Q 016563 293 VLMDVGCEL 301 (387)
Q Consensus 293 vlvD~g~~~ 301 (387)
+.|+-+...
T Consensus 331 fTIEP~i~~ 339 (396)
T PLN03158 331 FTIEPMINA 339 (396)
T ss_pred EEECCeecc
Confidence 999977543
No 50
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=91.58 E-value=2.5 Score=38.48 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCC-Cccccc--------cC-CCCccCC
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPN-AAVIHY--------SR-NDQKIDD 289 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~-a~~~H~--------~~-~~~~l~~ 289 (387)
+|++.+.+.++...+++.++||++=.||...++..+.+.|.... ...+ |.. +...|. .+ ++.+|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~G~~~~--~~~~--GHgiG~~~~e~p~~~~~~~~~~~~~le~ 185 (238)
T cd01086 110 AKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVV--REFG--GHGIGRKFHEEPQIPNYGRPGTGPKLKP 185 (238)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCccee--cCcc--ccCCCCccccCCCcCCccCCCCCCEecC
Confidence 46777778888888999999999999999999999999987531 1111 111 111221 12 4678999
Q ss_pred CCEEEEEeceee
Q 016563 290 GDLVLMDVGCEL 301 (387)
Q Consensus 290 Gd~vlvD~g~~~ 301 (387)
|.++.++-+..+
T Consensus 186 Gmv~~iep~i~~ 197 (238)
T cd01086 186 GMVFTIEPMINL 197 (238)
T ss_pred CCEEEEeeEEEC
Confidence 999999987653
No 51
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=91.53 E-value=2.2 Score=40.43 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCC--cccccc--------CCCCccCC
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNA--AVIHYS--------RNDQKIDD 289 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a--~~~H~~--------~~~~~l~~ 289 (387)
.++..+.+.+|++.+++.++||++=.||...++..+.+.|+... .. ..|..- ..+|.. .++.+|++
T Consensus 102 ~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~~G~~~~--~~--~~GHgig~~~~h~~~~ip~~~~~~~~~le~ 177 (291)
T cd01088 102 YDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPI--RN--LTGHSIERYRLHAGKSIPNVKGGEGTRLEE 177 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCEEe--ec--CCccCccCccccCCCccCccCCCCCCEeCC
Confidence 34556677788999999999999999999999999999998631 11 111111 113322 23568999
Q ss_pred CCEEEEEeceee-CCeeeceeEEeec
Q 016563 290 GDLVLMDVGCEL-HGYVSDMTRTWPP 314 (387)
Q Consensus 290 Gd~vlvD~g~~~-~GY~sDitRT~~v 314 (387)
|+++.||.+..- .|+..+-.||-..
T Consensus 178 gmV~aIEp~~s~G~G~v~~~~~~~iy 203 (291)
T cd01088 178 GDVYAIEPFATTGKGYVHDGPECSIY 203 (291)
T ss_pred CCEEEEceeEECCCCeeecCCceEEE
Confidence 999999976544 6787777776543
No 52
>PRK12896 methionine aminopeptidase; Reviewed
Probab=91.29 E-value=2 Score=39.62 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceE--ecCCC----C-cccccc-C-CCCccCCC
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVV--GGGPN----A-AVIHYS-R-NDQKIDDG 290 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~iv--asG~~----a-~~~H~~-~-~~~~l~~G 290 (387)
.+++.+.+.+++.++++.++||++=.+|...+...+.+.|.... ...+ .-|.. . ...++. + ++.+|++|
T Consensus 125 ~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~~~~--~~~~GHgiG~~~he~p~~~~~~~~~~~~~~le~G 202 (255)
T PRK12896 125 AEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVV--RDLTGHGVGRSLHEEPSVILTYTDPLPNRLLRPG 202 (255)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEec--cCcccCCcCcccccCCCccccCCCCCCCCEecCC
Confidence 45667777788888888999999999999999999999987421 1111 11111 1 111111 2 35689999
Q ss_pred CEEEEEecee------------------eCCeeeceeEEeec
Q 016563 291 DLVLMDVGCE------------------LHGYVSDMTRTWPP 314 (387)
Q Consensus 291 d~vlvD~g~~------------------~~GY~sDitRT~~v 314 (387)
.++.++-+.. .+++..-+.-|+.|
T Consensus 203 mV~~iEp~i~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~v 244 (255)
T PRK12896 203 MTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVV 244 (255)
T ss_pred cEEEEeceEEcCCCceEEcCCCCEEEecCCCeEEEEEEEEEE
Confidence 9999987653 24566668888877
No 53
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=90.63 E-value=2.4 Score=39.24 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCC-CCcceEecCC----CCccccccCCC--CccCCC
Q 016563 218 KLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRM-AFNPVVGGGP----NAAVIHYSRND--QKIDDG 290 (387)
Q Consensus 218 ~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~-~~~~ivasG~----~a~~~H~~~~~--~~l~~G 290 (387)
+..++.++.+.+++.++++.++||.+-.+|...++..++.+|+... .|.. =..|. .-.++||..++ .+|++|
T Consensus 120 ~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~~G~~vVr~~~G-Hgig~~~He~p~ip~y~~~~~~~~l~~G 198 (255)
T COG0024 120 EDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTG-HGIGRELHEEPSIPNYGKDGTGVRLKEG 198 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCEEeecccC-CccCcccCCCCeeccccCCCCCcccCCC
Confidence 4556678888999999999999999999999999999998885421 0100 01111 22357765432 489999
Q ss_pred CEEEEEeceeeC-Ceeecee-EEee
Q 016563 291 DLVLMDVGCELH-GYVSDMT-RTWP 313 (387)
Q Consensus 291 d~vlvD~g~~~~-GY~sDit-RT~~ 313 (387)
.++.|+--..-+ ++..+.. ..|.
T Consensus 199 mv~aIEPmi~~G~~~~~~~~~d~Wt 223 (255)
T COG0024 199 MVFAIEPMINTGSGEVVEGPSDRWT 223 (255)
T ss_pred CEEEEeeEEEcCCCceEecCCCCeE
Confidence 999998666554 5555444 4443
No 54
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=90.53 E-value=2 Score=39.56 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCC-CCcceEe--cCCC----CccccccCCCCccCCCC
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRM-AFNPVVG--GGPN----AAVIHYSRNDQKIDDGD 291 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~-~~~~iva--sG~~----a~~~H~~~~~~~l~~Gd 291 (387)
.+|++-+++.++.+++++.++||++=.++.......+.+.|.+.. .|..-+. .|-. ...+ ...++.+|++|-
T Consensus 120 ~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~~~~~~~~~~~~~GHgiGle~hE~~~~l-~~~~~~~L~~GM 198 (243)
T cd01091 120 EQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPELEPNFTKNLGFGIGLEFRESSLII-NAKNDRKLKKGM 198 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhChhHHHhCcCCcccccCcccccCcccc-CCCCCCCcCCCC
Confidence 456677888888899999999999999999999888887753211 1211111 1111 0011 112467899999
Q ss_pred EEEEEecee-e----------CCeeeceeEEeec
Q 016563 292 LVLMDVGCE-L----------HGYVSDMTRTWPP 314 (387)
Q Consensus 292 ~vlvD~g~~-~----------~GY~sDitRT~~v 314 (387)
++.+..|.. + +.|.--++-|+.|
T Consensus 199 vf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~V 232 (243)
T cd01091 199 VFNLSIGFSNLQNPEPKDKESKTYALLLSDTILV 232 (243)
T ss_pred EEEEeCCcccccCccccCccCCeeEEEEEEEEEE
Confidence 999999875 2 3578888999988
No 55
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=90.21 E-value=1.6 Score=41.44 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccc-------c-CCCCccCCCCE
Q 016563 221 RESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHY-------S-RNDQKIDDGDL 292 (387)
Q Consensus 221 r~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~-------~-~~~~~l~~Gd~ 292 (387)
++..+.+..|.+.+++.++||++=.||...++..+.+.|+... .....=|-....+|. . .++.+|++|++
T Consensus 107 ~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i--~~~~GHgig~~~~h~g~~ip~i~~~~~~~le~GmV 184 (295)
T TIGR00501 107 DNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPI--SNLTGHSMAPYRLHGGKSIPNVKERDTTKLEEGDV 184 (295)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeee--cCCCCcceecccccCCCccCeecCCCCCEeCCCCE
Confidence 6677777888889999999999999999999999999998631 111110100012232 2 23568999999
Q ss_pred EEEEeceee-CCeeeceeEEe
Q 016563 293 VLMDVGCEL-HGYVSDMTRTW 312 (387)
Q Consensus 293 vlvD~g~~~-~GY~sDitRT~ 312 (387)
+.|+.+..- .|+..|-.+|-
T Consensus 185 ~aIEP~~~~G~G~v~~~~~~~ 205 (295)
T TIGR00501 185 VAIEPFATDGVGYVTDGGEVS 205 (295)
T ss_pred EEEceeEECCcCeEecCCCeE
Confidence 999976543 58887777664
No 56
>PRK12897 methionine aminopeptidase; Reviewed
Probab=90.04 E-value=2.5 Score=39.02 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEec--CCC----Ccccccc-C-CCCccCCCC
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGG--GPN----AAVIHYS-R-NDQKIDDGD 291 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivas--G~~----a~~~H~~-~-~~~~l~~Gd 291 (387)
.|++.+++..+.+.+++.++||++-.|+...++..+.+.|... +...+.= |-+ -.+.++. + ++.+|++|.
T Consensus 119 ~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~--~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~l~~Gm 196 (248)
T PRK12897 119 AEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSV--ARDFTGHGIGKEIHEEPAIFHFGKQGQGPELQEGM 196 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCcc--CCCeEECccCCcccCCCccCCCCCCCCCCCcCCCC
Confidence 4556677778888888899999999999999999999998752 2211111 111 1112221 1 345899999
Q ss_pred EEEEEeceee-----------------CC-eeeceeEEeec
Q 016563 292 LVLMDVGCEL-----------------HG-YVSDMTRTWPP 314 (387)
Q Consensus 292 ~vlvD~g~~~-----------------~G-Y~sDitRT~~v 314 (387)
++.+.-|... .| +..-++-|+.|
T Consensus 197 v~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~V 237 (248)
T PRK12897 197 VITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAI 237 (248)
T ss_pred EEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEE
Confidence 9999987652 23 56667777766
No 57
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=89.82 E-value=4.4 Score=35.93 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCC-CCCCcceEecCCCCc--cccc--cCCCCccCCCCEEE
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ-RMAFNPVVGGGPNAA--VIHY--SRNDQKIDDGDLVL 294 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~-~~~~~~ivasG~~a~--~~H~--~~~~~~l~~Gd~vl 294 (387)
.+++.+.+.++++.+++.++||++=.||.+.+...+.+.|.. ......--..|.... .|.. ..++.+|++|-++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~~~~~~~~~GH~iG~~~~~~~P~i~~~~~~~~l~~gmv~~ 183 (207)
T PF00557_consen 104 QRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGLEEPYPHGLGHGIGLEFHEPGPNIARPGDDTVLEPGMVFA 183 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTEGEEBTSSSEEEESSSSSEEEEEESSTTTSSB--TTBEEE
T ss_pred ccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcccceeeecccccccccccccceeeecccccceecCCCcee
Confidence 677777788888999999999999999999999999999872 111111122232111 1222 12567999999999
Q ss_pred EEecee-eCCe-eeceeEEeec
Q 016563 295 MDVGCE-LHGY-VSDMTRTWPP 314 (387)
Q Consensus 295 vD~g~~-~~GY-~sDitRT~~v 314 (387)
++.+.. ..|. ..-+.=|+.|
T Consensus 184 iep~~~~~~~~~g~~~ed~v~V 205 (207)
T PF00557_consen 184 IEPGLYFIPGWGGVRFEDTVLV 205 (207)
T ss_dssp EEEEEEEETTSEEEEEBEEEEE
T ss_pred EeeeEEccCCCcEEEEEEEEEE
Confidence 998654 2232 4444444443
No 58
>PRK12318 methionine aminopeptidase; Provisional
Probab=89.64 E-value=3.5 Score=39.11 Aligned_cols=83 Identities=11% Similarity=0.001 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCC----CccccccC-CCCccCCCCEE
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPN----AAVIHYSR-NDQKIDDGDLV 293 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~----a~~~H~~~-~~~~l~~Gd~v 293 (387)
.+|++.+++.++.+.+++.++||++-.||...+...+.+.|........-=.-|-+ -.++++.+ ++.+|++|-++
T Consensus 159 ~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~~~~~~~~GHgIGl~~hE~P~i~~~~~~~~~~L~~GMV~ 238 (291)
T PRK12318 159 IKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIKFHENPYVPHHRNSSKIPLAPGMIF 238 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCcccCCcCccccCCCcccCcCCCCCCEeCCCCEE
Confidence 45677788888889999999999999999999999999998752110000011111 11122222 24579999999
Q ss_pred EEEeceee
Q 016563 294 LMDVGCEL 301 (387)
Q Consensus 294 lvD~g~~~ 301 (387)
.++-+...
T Consensus 239 ~iEP~i~~ 246 (291)
T PRK12318 239 TIEPMINV 246 (291)
T ss_pred EECCEEEc
Confidence 99876544
No 59
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=89.15 E-value=3.9 Score=37.17 Aligned_cols=91 Identities=14% Similarity=0.024 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCC------CCCcceEecCCCCccccccCCCCccCCCCE
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR------MAFNPVVGGGPNAAVIHYSRNDQKIDDGDL 292 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~------~~~~~ivasG~~a~~~H~~~~~~~l~~Gd~ 292 (387)
..+++.+.+.++.+++++.++||.+=.||...++..+.+.|+.. ....-.+..+++... -...+++|-+
T Consensus 121 ~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~~~G~~~~~~~~~h~~g~~~~~~~~~~~-----~~~~l~~gmv 195 (228)
T cd01089 121 KKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSGEGKAK-----LVECVKHGLL 195 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCEEecCccccCcCceEecCCCCcc-----chhhccCCcc
Confidence 46677888888999999999999999999999999999999521 011112333332211 1457899999
Q ss_pred EEEEeceeeC-CeeeceeEEeec
Q 016563 293 VLMDVGCELH-GYVSDMTRTWPP 314 (387)
Q Consensus 293 vlvD~g~~~~-GY~sDitRT~~v 314 (387)
+.+..+.... .+..-++=|+.|
T Consensus 196 f~~ep~~~~~g~~~~~~~~Tv~v 218 (228)
T cd01089 196 FPYPVLYEKEGEVVAQFKLTVLL 218 (228)
T ss_pred cccceeEccCCCeEEEEEEEEEE
Confidence 9999887764 488889999988
No 60
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=88.07 E-value=3.7 Score=40.68 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCC------CcceEecCCCCccccccC------CCCcc
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMA------FNPVVGGGPNAAVIHYSR------NDQKI 287 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~------~~~ivasG~~a~~~H~~~------~~~~l 287 (387)
.+.+...+..|+..+++.++||++=.+|...++..+.+.|+.... ....+--|...-++++.+ .+..+
T Consensus 140 ~~~l~~aa~~A~~aai~~vkPG~~~~dI~~ai~~v~~~~G~~~v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~l 219 (389)
T TIGR00495 140 KADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEF 219 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCeecCCceeecccceeccCCCeeeecCCccccCCCCCCEe
Confidence 445566677788888899999999999999999999999986321 001111111111244332 24579
Q ss_pred CCCCEEEEEeceee-CCeeecee-EEe
Q 016563 288 DDGDLVLMDVGCEL-HGYVSDMT-RTW 312 (387)
Q Consensus 288 ~~Gd~vlvD~g~~~-~GY~sDit-RT~ 312 (387)
++|+++.||....- .|+.-+.. ||-
T Consensus 220 e~gev~aIEp~vs~G~g~v~~~~~~~t 246 (389)
T TIGR00495 220 EENEVYAVDILVSTGEGKAKDADQRTT 246 (389)
T ss_pred cCCCEEEEeeeecCCCceEEECCCeeE
Confidence 99999999987654 45555544 544
No 61
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=87.37 E-value=5.2 Score=39.60 Aligned_cols=95 Identities=9% Similarity=0.003 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCc------cccccC-CCCccCCCC
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAA------VIHYSR-NDQKIDDGD 291 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~------~~H~~~-~~~~l~~Gd 291 (387)
.++++-+++.++..++++.++||++=.||.......+.+.|.....+ .--..|-... .+.-.+ ++.+|++|-
T Consensus 271 ~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~~~~~G~~~~h~-~GhgiGl~~~~~~~e~~~~l~~~~~~~L~~GM 349 (391)
T TIGR02993 271 AFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAVLKKYGIHKDSR-TGYPIGLSYPPDWGERTMSLRPGDNTVLKPGM 349 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccCCC-ceeeeccCcCCCCCCccccccCCCCceecCCC
Confidence 46677888899999999999999999999999999999988753111 1011121110 011122 467899999
Q ss_pred EEEEEeceeeCCeeeceeEEeec
Q 016563 292 LVLMDVGCELHGYVSDMTRTWPP 314 (387)
Q Consensus 292 ~vlvD~g~~~~GY~sDitRT~~v 314 (387)
++.++-|....|+..-+.-|+.|
T Consensus 350 v~tvEpgiy~~~~Gvried~v~V 372 (391)
T TIGR02993 350 TFHFMTGLWMEDWGLEITESILI 372 (391)
T ss_pred EEEEcceeEeCCCCeEEeeEEEE
Confidence 99999887666665667778877
No 62
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=87.26 E-value=4.7 Score=40.77 Aligned_cols=95 Identities=11% Similarity=0.117 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCC--CCCC--cceEe-cCCCCc--cccc---cC-----C
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ--RMAF--NPVVG-GGPNAA--VIHY---SR-----N 283 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~--~~~~--~~iva-sG~~a~--~~H~---~~-----~ 283 (387)
..+...+++.+|.+.+++.++||++=.||.+.++..+.+.|.+ +..| .+|.- +|..-. .+|. .| +
T Consensus 264 ~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevies~G~e~~Gk~f~~k~I~nltGHgIG~y~iHe~k~iP~v~~~~ 343 (470)
T PTZ00053 264 KYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRNLNGHSIGPYIIHGGKSVPIVKGGE 343 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcccCcccccccccCCcccCCCCccccCCCcCCeeCCCC
Confidence 3566777888889999999999999999999999999999964 2222 22221 222211 2443 22 3
Q ss_pred CCccCCCCEEEEEecee-eCCeeeceeEEee
Q 016563 284 DQKIDDGDLVLMDVGCE-LHGYVSDMTRTWP 313 (387)
Q Consensus 284 ~~~l~~Gd~vlvD~g~~-~~GY~sDitRT~~ 313 (387)
..+|++|+++.|+..+. -.||..|-.+|-.
T Consensus 344 ~~~LeeGmVfaIEPf~stG~G~v~~~~~~si 374 (470)
T PTZ00053 344 NTRMEEGELFAIETFASTGRGYVNEDLECSH 374 (470)
T ss_pred CCEecCCCEEEEcceeeCCCCeEecCCCcee
Confidence 45899999999996554 4788888666543
No 63
>PRK09795 aminopeptidase; Provisional
Probab=86.60 E-value=5.8 Score=38.79 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCC-ccccccC-----CCCc
Q 016563 213 SPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNA-AVIHYSR-----NDQK 286 (387)
Q Consensus 213 s~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a-~~~H~~~-----~~~~ 286 (387)
.+.|-+.++++-+++.++...+++.++||++=.||.+.....+.+.|... .|.- ..|..- ...|-.| ++.+
T Consensus 235 ~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~~~~~~g~~~-~~~h--~~GHgiGl~~he~p~i~~~~~~~ 311 (361)
T PRK09795 235 VSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGD-YFGH--NTGHAIGIEVHEDPRFSPRDTTT 311 (361)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCc-cCCC--CCCccCCccccCCCCcCCCCCCC
Confidence 35555568889999999999999999999999999999999999988642 1211 112111 1133222 4678
Q ss_pred cCCCCEEEEEeceeeCCe-eeceeEEeec
Q 016563 287 IDDGDLVLMDVGCELHGY-VSDMTRTWPP 314 (387)
Q Consensus 287 l~~Gd~vlvD~g~~~~GY-~sDitRT~~v 314 (387)
|++|-++.|+-|....|. ..-+.-|+.|
T Consensus 312 l~~gmv~~iEpgiy~~~~~gvriEd~v~v 340 (361)
T PRK09795 312 LQPGMLLTVEPGIYLPGQGGVRIEDVVLV 340 (361)
T ss_pred cCCCCEEEECCEEEeCCCCEEEEeeEEEE
Confidence 999999999987755332 2345667766
No 64
>PRK07281 methionine aminopeptidase; Reviewed
Probab=86.32 E-value=6.3 Score=37.29 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceE--ecCCCC----ccccc--cCCCCccCCCC
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVV--GGGPNA----AVIHY--SRNDQKIDDGD 291 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~iv--asG~~a----~~~H~--~~~~~~l~~Gd 291 (387)
.|++.+++.+++.++++.++||++=.||...++..+.+.|... +...+ ..|.+. .++++ ..++.+|++|.
T Consensus 150 ~~~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~--~~~~~GHGIGl~~hE~P~i~~~~~~~~~~~Le~GM 227 (286)
T PRK07281 150 VKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRGYGV--VRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGM 227 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc--CCCeeeeeCCCccCCCCcCCCcccCCCCCEECCCC
Confidence 5788888999999999999999999999999999999887642 21111 112110 01122 11356899999
Q ss_pred EEEEEeceee
Q 016563 292 LVLMDVGCEL 301 (387)
Q Consensus 292 ~vlvD~g~~~ 301 (387)
++.|.-|...
T Consensus 228 V~tiEPgiy~ 237 (286)
T PRK07281 228 VLTIEPMINT 237 (286)
T ss_pred EEEECCeeEc
Confidence 9999988754
No 65
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=86.13 E-value=2.4 Score=39.74 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 016563 320 SLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKG 360 (387)
Q Consensus 320 ~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~ 360 (387)
+.+|++-+...++.+.+..++|||+|.+||+.++.+...+.
T Consensus 123 e~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ier 163 (369)
T KOG2738|consen 123 EGMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIER 163 (369)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhc
Confidence 34577778888999999999999999999999999988764
No 66
>PRK15173 peptidase; Provisional
Probab=83.46 E-value=13 Score=35.78 Aligned_cols=94 Identities=7% Similarity=-0.122 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceE--ecCCCCcccccc-----CCCCccCCCC
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVV--GGGPNAAVIHYS-----RNDQKIDDGD 291 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~iv--asG~~a~~~H~~-----~~~~~l~~Gd 291 (387)
..|++-+++.++...+++.++||++=.+|.......+.+.|.... +...+ ..|-. .-.|.. .++.+|++|-
T Consensus 203 ~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~~G~~~~-~~~~~GHGiG~~-lg~~E~P~i~~~~~~~Le~GM 280 (323)
T PRK15173 203 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNY-NRGHLGHGNGVF-LGLEESPFVSTHATESFTSGM 280 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccc-cCCCCCCcCCCC-CCcCCCCCCCCCCCCccCCCC
Confidence 456778888899999999999999999999999999999886421 11101 01110 011211 2457899999
Q ss_pred EEEEEeceee-CCeeeceeEEeec
Q 016563 292 LVLMDVGCEL-HGYVSDMTRTWPP 314 (387)
Q Consensus 292 ~vlvD~g~~~-~GY~sDitRT~~v 314 (387)
++.++-|... +.+..-+.-|+.|
T Consensus 281 V~tiEPgiy~~g~ggvriEDtvlV 304 (323)
T PRK15173 281 VLSLETPYYGYNLGSIMIEDMILI 304 (323)
T ss_pred EEEECCEEEcCCCcEEEEeeEEEE
Confidence 9999887542 3334557888877
No 67
>PRK14576 putative endopeptidase; Provisional
Probab=81.15 E-value=18 Score=36.03 Aligned_cols=94 Identities=10% Similarity=-0.080 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceE--ecC----CCCccccccC-CCCccCCCC
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVV--GGG----PNAAVIHYSR-NDQKIDDGD 291 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~iv--asG----~~a~~~H~~~-~~~~l~~Gd 291 (387)
..+++-+++.++.+++++.+|||++=.||.......+.+.|.... +..-+ ..| -+ -.|...+ ++.+|++|-
T Consensus 285 ~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~~G~~~~-~~~~~GHgiG~~l~~~-e~P~i~~~~~~~Le~GM 362 (405)
T PRK14576 285 LTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHY-NRGHLGHGDGVFLGLE-EVPFVSTQATETFCPGM 362 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccc-cCCCCCCCCCCCCCcC-cCCCcCCCCCCccCCCC
Confidence 466778888999999999999999999999999999999987431 11101 011 11 1122222 467899999
Q ss_pred EEEEEeceeeCC-eeeceeEEeec
Q 016563 292 LVLMDVGCELHG-YVSDMTRTWPP 314 (387)
Q Consensus 292 ~vlvD~g~~~~G-Y~sDitRT~~v 314 (387)
++.++.|....| ...-+.-|+.|
T Consensus 363 v~~vEp~~y~~g~ggvriEDtvlV 386 (405)
T PRK14576 363 VLSLETPYYGIGVGSIMLEDMILI 386 (405)
T ss_pred EEEECCceeecCCCEEEEeeEEEE
Confidence 999986543322 22336778877
No 68
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=80.93 E-value=17 Score=33.16 Aligned_cols=96 Identities=11% Similarity=-0.046 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCC----C-------------CCCcceEe--cCCCC-ccc
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ----R-------------MAFNPVVG--GGPNA-AVI 278 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~----~-------------~~~~~iva--sG~~a-~~~ 278 (387)
..++..+.+.++++.+++.++||++=.||...+...+.+.|.. . ..|.--+. .|-.. ..|
T Consensus 104 ~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e~p 183 (243)
T cd01087 104 EQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHDVG 183 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccCcccccCc
Confidence 3456677788888888999999999999999888877655321 0 01110011 11110 112
Q ss_pred cc--cC-CCCccCCCCEEEEEeceeeCC-----------eeeceeEEeec
Q 016563 279 HY--SR-NDQKIDDGDLVLMDVGCELHG-----------YVSDMTRTWPP 314 (387)
Q Consensus 279 H~--~~-~~~~l~~Gd~vlvD~g~~~~G-----------Y~sDitRT~~v 314 (387)
.. .+ ++.+|++|-++.+.-|....| +..-+.-|+.|
T Consensus 184 ~~~~~~~~~~~l~~GMv~~iEp~iy~~~~~~~~~~~~~~~g~~ied~v~V 233 (243)
T cd01087 184 GYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLV 233 (243)
T ss_pred cccccCCCCCCCCCCCEEEECCEEEeCCcccccccccceeEEEeeeEEEE
Confidence 22 22 357899999999998876543 56667788877
No 69
>PRK14575 putative peptidase; Provisional
Probab=80.77 E-value=19 Score=35.89 Aligned_cols=95 Identities=6% Similarity=-0.135 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCC--CCcce-Eec--CCCCccccc-cCCCCccCCCCE
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRM--AFNPV-VGG--GPNAAVIHY-SRNDQKIDDGDL 292 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~--~~~~i-vas--G~~a~~~H~-~~~~~~l~~Gd~ 292 (387)
..|++.+++.++...+++.++||++=.+|.+.....+.+.|.... .+... +.. |-+- .|.. ..++.+|++|-+
T Consensus 286 ~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~G~~~~~~~~~GHGiG~~lg~~e-~P~i~~~~~~~Le~GMv 364 (406)
T PRK14575 286 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEE-SPFVSTHATESFTSGMV 364 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCCCCcccCCCCCcc-CCCCCCCCCCCcCCCCE
Confidence 356777788889999999999999999999999999999886431 11000 110 1110 0111 124578999999
Q ss_pred EEEEeceeeCC-eeeceeEEeec
Q 016563 293 VLMDVGCELHG-YVSDMTRTWPP 314 (387)
Q Consensus 293 vlvD~g~~~~G-Y~sDitRT~~v 314 (387)
+.++-|....| +..-++-|+.|
T Consensus 365 ~tiEpgiy~~g~gGvriEDtvlV 387 (406)
T PRK14575 365 LSLETPYYGYNLGSIMIEDMILI 387 (406)
T ss_pred EEECCeeecCCCcEEEEEeEEEE
Confidence 99987764322 34557888877
No 70
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=78.02 E-value=22 Score=34.93 Aligned_cols=93 Identities=16% Similarity=0.058 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcce--EecCCCCccccccC------CCCccCCCC
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPV--VGGGPNAAVIHYSR------NDQKIDDGD 291 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~i--vasG~~a~~~H~~~------~~~~l~~Gd 291 (387)
.|+.-++..+|+.++++.++||++=.++.+.....+.+.|... .|..- -..| ...-.|-.| ++.+|++|=
T Consensus 264 ~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~~g~~~-~~~h~~GHgvG-~~l~vhE~p~~~~~~~~~~L~~GM 341 (384)
T COG0006 264 QREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGL-YFLHGTGHGVG-FVLDVHEHPQYLSPGSDTTLEPGM 341 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcCCcc-cccCCccccCC-CCcccCcCccccCCCCCccccCCc
Confidence 4577788889999999999999999999999999999966532 12111 1122 122244444 467999999
Q ss_pred EEEEEeceee-CCeeeceeEEeec
Q 016563 292 LVLMDVGCEL-HGYVSDMTRTWPP 314 (387)
Q Consensus 292 ~vlvD~g~~~-~GY~sDitRT~~v 314 (387)
++.++-|..+ +++-.-|.-++.|
T Consensus 342 v~t~Epg~y~~g~~GirIEd~vlV 365 (384)
T COG0006 342 VFSIEPGIYIPGGGGVRIEDTVLV 365 (384)
T ss_pred EEEeccccccCCCceEEEEEEEEE
Confidence 9999999544 7788999999988
No 71
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=56.53 E-value=73 Score=26.63 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCC--ccccccC-CCCccCCCCEEEE
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNA--AVIHYSR-NDQKIDDGDLVLM 295 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a--~~~H~~~-~~~~l~~Gd~vlv 295 (387)
..+.+|+++.+++.+-.+.+--.-++ +.+..++..+-....+ +|.|....|... ..|=... .+..-..+.-|+|
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~-~~a~~lD~~LW~~~~~--sFlPH~~~~~~~~~~~PV~l~~~~~~~~~~~~~Li 90 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE-EQAEALDEALWTFRDE--SFLPHGLAGEGPAAGQPVLLTWPGKRNANHRDLLI 90 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHHHHhcCCCCC--cCCCCCcCCCCCCCCCCEEEEcCCCCCCCCCcEEE
Confidence 67889999999887765543333344 5677788777665433 676665444432 1111111 2222234566788
Q ss_pred EeceeeCCeeeceeEEeecCCCCCHHHHHH
Q 016563 296 DVGCELHGYVSDMTRTWPPCGSFSSLEEAL 325 (387)
Q Consensus 296 D~g~~~~GY~sDitRT~~v~G~~s~~q~~~ 325 (387)
.+....-.+.+...|.+-+-|. ++..++.
T Consensus 91 nL~~~~p~~~~~F~Rvieiv~~-d~~~~~~ 119 (142)
T PRK05728 91 NLDGAVPAFAAAFERVVDFVGY-DEAAKQA 119 (142)
T ss_pred ECCCCCcchhhcccEEEEEeCC-CHHHHHH
Confidence 8888888888899999754343 5555443
No 72
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=53.33 E-value=59 Score=30.78 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016563 321 LEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLR 358 (387)
Q Consensus 321 ~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~ 358 (387)
..|+..++=+++.+.+-+.+|||+++-||.+...+..+
T Consensus 87 d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR 124 (397)
T KOG2775|consen 87 DLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTR 124 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 34555666667777788899999999998876655444
No 73
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=50.79 E-value=1.9e+02 Score=26.07 Aligned_cols=85 Identities=12% Similarity=-0.033 Sum_probs=51.7
Q ss_pred HHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCCccccc------cC-CCCccCCCCEEEEEece
Q 016563 228 CQALLQTMLHS-KSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHY------SR-NDQKIDDGDLVLMDVGC 299 (387)
Q Consensus 228 ~~a~~~~~~~~-~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a~~~H~------~~-~~~~l~~Gd~vlvD~g~ 299 (387)
.++..++.+.+ +||.+=.++...++..+.+.|...... .-=..|.+ ..+|- .+ ++.+|++|-++.++-+.
T Consensus 121 ~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~g~~~~h~-~GHgIG~~-l~~hE~P~i~~~~~~~~~L~~GmvftiEP~i 198 (224)
T cd01085 121 LKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYGHG-TGHGVGSF-LNVHEGPQSISPAPNNVPLKAGMILSNEPGY 198 (224)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCC-CCCCCCCC-CcCCCCCCcCCcCCCCCCcCCCCEEEECCEe
Confidence 33444555444 589999999999998888887542100 00011110 01221 12 35689999999999887
Q ss_pred ee-CCeeeceeEEeec
Q 016563 300 EL-HGYVSDMTRTWPP 314 (387)
Q Consensus 300 ~~-~GY~sDitRT~~v 314 (387)
.. +...--+..|+.|
T Consensus 199 y~~g~~gvried~v~V 214 (224)
T cd01085 199 YKEGKYGIRIENLVLV 214 (224)
T ss_pred EeCCCeEEEeeEEEEE
Confidence 65 3455567888876
No 74
>PRK10879 proline aminopeptidase P II; Provisional
Probab=47.00 E-value=1.8e+02 Score=29.31 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH----HHcCCCC---------CCCcceE--ecCCCC-ccccccC-
Q 016563 220 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYEC----KMRGAQR---------MAFNPVV--GGGPNA-AVIHYSR- 282 (387)
Q Consensus 220 mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~----~~~G~~~---------~~~~~iv--asG~~a-~~~H~~~- 282 (387)
.|++.+++.++..++++.++||++=.+|.......+ .+.|... ..+...+ ..|..- .-.|-.|
T Consensus 284 q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~~~ 363 (438)
T PRK10879 284 QREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDVGV 363 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcCCC
Confidence 456677788888889999999999999988766433 3344321 0111110 111111 1133222
Q ss_pred ----CCCccCCCCEEEEEeceee----------CCeeeceeEEeec
Q 016563 283 ----NDQKIDDGDLVLMDVGCEL----------HGYVSDMTRTWPP 314 (387)
Q Consensus 283 ----~~~~l~~Gd~vlvD~g~~~----------~GY~sDitRT~~v 314 (387)
++++|++|-++.|+-|... .|+..-+.-|+.|
T Consensus 364 ~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlV 409 (438)
T PRK10879 364 YGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVI 409 (438)
T ss_pred cCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEE
Confidence 3578999999999988753 3566667778877
No 75
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=38.46 E-value=62 Score=19.98 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q 016563 224 ASIGCQALLQTMLHSKSHPYEGLLAAKFEYECK 256 (387)
Q Consensus 224 ~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~ 256 (387)
+.+...++..+...++...|+.+|...++..+.
T Consensus 4 C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~ 36 (39)
T PF05184_consen 4 CDICKFVVKEIEKLLKNNKTEEEIKKALEKACN 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHcCccHHHHHHHHHHHHh
Confidence 566777778888888889999999999988764
No 76
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=37.44 E-value=30 Score=20.74 Aligned_cols=14 Identities=57% Similarity=0.866 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHH
Q 016563 52 ISAEEYISRRKRLL 65 (387)
Q Consensus 52 i~~~ey~~R~~~L~ 65 (387)
||.+||.++.++|.
T Consensus 17 IseeEy~~~k~~ll 30 (31)
T PF09851_consen 17 ISEEEYEQKKARLL 30 (31)
T ss_pred CCHHHHHHHHHHHh
Confidence 56899999998875
No 77
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=35.17 E-value=1.4e+02 Score=31.35 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=49.5
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHcCCC-CCCCcceEecCC-----CCccccccCCCCccCCCCEEEEEec
Q 016563 231 LLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ-RMAFNPVVGGGP-----NAAVIHYSRNDQKIDDGDLVLMDVG 298 (387)
Q Consensus 231 ~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~-~~~~~~ivasG~-----~a~~~H~~~~~~~l~~Gd~vlvD~g 298 (387)
-+.+...++||.+-.+|...++..+.+.|-+ ++.|.--+.++. .+..+....|+++|+.|+.+.+.+|
T Consensus 311 Qk~i~~~~rpG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~igiefR~s~~~~nvkn~r~lq~g~~fnis~g 384 (1001)
T COG5406 311 QKYILGLVRPGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIGIEFRSSQKPFNVKNGRVLQAGCIFNISLG 384 (1001)
T ss_pred HHHHHhhcCCCCCchhHHHHHHHHHHhcCCccCchHhhhhhhhccccccccccceeccCCceeccccEEEEeec
Confidence 3455667899999999999999888888865 344443343332 2344666678899999999999886
No 78
>PRK13607 proline dipeptidase; Provisional
Probab=33.64 E-value=2.7e+02 Score=28.12 Aligned_cols=40 Identities=8% Similarity=-0.191 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH----HHHcCCC
Q 016563 222 ESASIGCQALLQTMLHSKSHPYEGLLAAKFEYE----CKMRGAQ 261 (387)
Q Consensus 222 ~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~----~~~~G~~ 261 (387)
+.-+++.++.+++++.++||++=.||....... +.+.|..
T Consensus 272 ~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~~L~~~Gl~ 315 (443)
T PRK13607 272 ALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIV 315 (443)
T ss_pred HHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 667788888899999999999999998776543 3445544
No 79
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=33.25 E-value=87 Score=23.98 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCc----cCCCCCCccccccccCCCCCC
Q 016563 345 SLLQIHHYSVGMLRKGLKEIGI----VNSDGTDPYNELNPTSIGDNY 387 (387)
Q Consensus 345 ~~~di~~~~~~~l~~~l~~~g~----~~~~~~~~~~~~~~H~iGH~l 387 (387)
...+|.....+.+.+ ++|- +.|. .++.++.|..||.|
T Consensus 35 ~~k~iA~~iKkefDk---kyG~~WhcivG~---~FGs~vThe~g~Fi 75 (90)
T KOG3430|consen 35 IEKDIAAFIKKEFDK---KYGPTWHCIVGR---NFGSYVTHETGHFI 75 (90)
T ss_pred ChHHHHHHHHHHHhh---hcCCccEEEEcC---CcceEEEeecCcEE
Confidence 566666665555554 3554 3344 68999999999974
No 80
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.52 E-value=2e+02 Score=25.70 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=13.8
Q ss_pred CCCCccCCCCEEEEEece
Q 016563 282 RNDQKIDDGDLVLMDVGC 299 (387)
Q Consensus 282 ~~~~~l~~Gd~vlvD~g~ 299 (387)
++|-.+..+++++||+|-
T Consensus 120 tsNiIl~~~~i~~IDfGL 137 (204)
T COG3642 120 TSNIILSGGRIYFIDFGL 137 (204)
T ss_pred cceEEEeCCcEEEEECCc
Confidence 345567777799999995
No 81
>COG2944 Predicted transcriptional regulator [Transcription]
Probab=26.12 E-value=96 Score=24.55 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 016563 212 KSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLA 248 (387)
Q Consensus 212 Ks~~EI~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~ 248 (387)
-|+.||+.||+.-.++...|...+ |+|...|.
T Consensus 44 ls~~eIk~iRe~~~lSQ~vFA~~L-----~vs~~Tv~ 75 (104)
T COG2944 44 LSPTEIKAIREKLGLSQPVFARYL-----GVSVSTVR 75 (104)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHH-----CCCHHHHH
Confidence 588999999999999999998887 55555544
No 82
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=24.05 E-value=4.5e+02 Score=22.32 Aligned_cols=92 Identities=10% Similarity=-0.037 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCCCCCcceEecCCCC--ccccccC-CCCccCCCCEEEE
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNA--AVIHYSR-NDQKIDDGDLVLM 295 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~~~~~~ivasG~~a--~~~H~~~-~~~~l~~Gd~vlv 295 (387)
..+.||+++.+++.+-.+.+--.-++ +....++..+-..-. .+|.|....|... ..|=... +..... +.-|+|
T Consensus 14 ~~~~acrL~~Ka~~~G~rv~I~~~d~-~~~~~LD~~LWtf~~--~SFlPH~~~~~~~~a~~PV~L~~~~~~p~-~~~vLi 89 (154)
T PRK06646 14 LLKSILLLIEKCYYSDLKSVILTADA-DQQEMLNKNLWTYSR--KQFIPHGSKLDPQPEKQPIYITDELQNPN-NASVLV 89 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCH-HHHHHHHHHhcCCCC--CCCCCCCCCCCCCCCCCCEEEecCCCCCC-CCCEEE
Confidence 56788999999888765543333344 466677776665433 3676665544432 1111111 111222 444566
Q ss_pred Eece-------eeCCeeeceeEEeec
Q 016563 296 DVGC-------ELHGYVSDMTRTWPP 314 (387)
Q Consensus 296 D~g~-------~~~GY~sDitRT~~v 314 (387)
-++. ..--|.+-..|.+.|
T Consensus 90 NL~~~~~~~~~~~p~~f~~F~RVi~v 115 (154)
T PRK06646 90 IISPTDIGKILQAKEYIRVFKRIIII 115 (154)
T ss_pred ECCCccccccccCchhhhccCEEEEE
Confidence 6665 344456777898866
No 83
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=23.73 E-value=4.1e+02 Score=28.75 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHcCCCC-------CCCcceEecCCCCccccccCCCCccCCCC
Q 016563 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR-------MAFNPVVGGGPNAAVIHYSRNDQKIDDGD 291 (387)
Q Consensus 219 ~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~~~~~~G~~~-------~~~~~ivasG~~a~~~H~~~~~~~l~~Gd 291 (387)
.|.+|-..--.+.+.++..++||..-.+|.......+.+++-+- .+|..-+-.-+++..+ ...|+++|++|.
T Consensus 258 emq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~~k~lG~~iGlEFREssl~i-naKnd~~lk~gm 336 (960)
T KOG1189|consen 258 EMQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELVPNFTKNLGFGIGLEFRESSLVI-NAKNDRVLKKGM 336 (960)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchhhhhhhhcccccceeeecccccc-cccchhhhccCc
Confidence 35677777777788888899999999999998888888776542 1111111122333333 345789999999
Q ss_pred EEEEEeceee-------CCeeeceeEEeec
Q 016563 292 LVLMDVGCEL-------HGYVSDMTRTWPP 314 (387)
Q Consensus 292 ~vlvD~g~~~-------~GY~sDitRT~~v 314 (387)
...|.+|..- +-|.--++-|+.|
T Consensus 337 vFni~lGf~nl~n~~~~~~yaL~l~DTvlv 366 (960)
T KOG1189|consen 337 VFNISLGFSNLTNPESKNSYALLLSDTVLV 366 (960)
T ss_pred EEEEeeccccccCcccccchhhhccceeee
Confidence 9999998532 3466678889888
No 84
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=23.12 E-value=66 Score=25.41 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=19.1
Q ss_pred CCccCCCCEEEEEe--ceeeCCeee
Q 016563 284 DQKIDDGDLVLMDV--GCELHGYVS 306 (387)
Q Consensus 284 ~~~l~~Gd~vlvD~--g~~~~GY~s 306 (387)
.+.+++|++|.+|. |..|.||.+
T Consensus 85 t~~i~dG~~vTvD~~rG~VY~g~~~ 109 (111)
T COG3848 85 TQLIRDGAIVTVDAQRGVVYEGAAS 109 (111)
T ss_pred hhhccCCCEEEEecccceEEecccC
Confidence 45789999999997 788888765
No 85
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=22.42 E-value=1.9e+02 Score=28.20 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 016563 323 EALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGL 361 (387)
Q Consensus 323 ~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l~~~l 361 (387)
+..=+.+..+.+..+++|+||++..||-..-..+|.++.
T Consensus 25 k~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t 63 (398)
T KOG2776|consen 25 KMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEET 63 (398)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHH
Confidence 556677888899999999999999999888888777654
No 86
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The regulatory domain of the polymerase is almost always associated with the C-terminal catalytic domain (see IPR001290 from INTERPRO). This domain consists of a duplication of two helix-loop-helix structural repeats [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0006471 protein ADP-ribosylation; PDB: 1GS0_B 3FHB_A 3C49_A 3CE0_A 3C4H_A 3KCZ_B 3KJD_B 3L3M_A 3GJW_A 1UK1_A ....
Probab=22.42 E-value=1.9e+02 Score=23.81 Aligned_cols=42 Identities=21% Similarity=0.127 Sum_probs=22.9
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016563 312 WPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGML 357 (387)
Q Consensus 312 ~~v~G~~s~~q~~~y~~v~~a~~~~i~~~kpG~~~~di~~~~~~~l 357 (387)
.|+ |+.|..|-+-...++.-...+++ ....-.++-+.+.+++
T Consensus 35 mPL-GkLS~~qI~~g~~iL~~i~~~l~---~~~~~~~i~~lsn~fY 76 (133)
T PF02877_consen 35 MPL-GKLSKEQIEKGYEILKEIEELLK---EQERRSKIEDLSNRFY 76 (133)
T ss_dssp STG-GGB-HHHHHHHHHHHHHHHHHHH---TTSSSHHHHHHHHHHH
T ss_pred CCc-hhcCHHHHHHHHHHHHHHHHHHH---ccccHHHHHHHHHHHH
Confidence 576 89998885554444444444444 4444455555554443
No 87
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=21.57 E-value=22 Score=31.94 Aligned_cols=38 Identities=29% Similarity=0.555 Sum_probs=31.8
Q ss_pred CCcceEecCCCCccccccCCCCccCCCCEEEEEeceee
Q 016563 264 AFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCEL 301 (387)
Q Consensus 264 ~~~~ivasG~~a~~~H~~~~~~~l~~Gd~vlvD~g~~~ 301 (387)
.+.||..+|.+-...--...+..+.+.|+|++++++.+
T Consensus 116 Ti~PI~G~g~RLGTLil~R~d~~F~ddDLiL~E~~aTv 153 (261)
T COG4465 116 TIVPIYGGGERLGTLILWRLDDKFTDDDLILVEYAATV 153 (261)
T ss_pred EEEEEecCCeeeeeEEEEecCCCCCccceehhhhhhHH
Confidence 45688999998777666778999999999999988754
No 88
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=20.76 E-value=3.4e+02 Score=28.01 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=28.7
Q ss_pred cCccCCCCCCCCCHHHHHHHHHHHHHhCCCCeE
Q 016563 41 QLMKEGEITPGISAEEYISRRKRLLEILPENSV 73 (387)
Q Consensus 41 ~~~~~~~~tp~i~~~ey~~R~~~L~~~m~~~~l 73 (387)
..++.|+....|+..||-.|++.|++++.-.++
T Consensus 117 ffik~gd~w~~i~e~~ylaklq~irq~ih~es~ 149 (943)
T PTZ00449 117 FFIKEGDAWAPIPEDEYLAKLQEIRQAIHIESF 149 (943)
T ss_pred EEeccCcccccCcHHHHHHHHHHHHHHHhhhhh
Confidence 345889988999999999999999999887776
No 89
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=20.76 E-value=1.7e+02 Score=21.18 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 016563 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEY 253 (387)
Q Consensus 217 I~~mr~A~~i~~~a~~~~~~~~~~G~tE~el~a~l~~ 253 (387)
+..+|.|-.+.+.-+..+++...--+|..||.+.+..
T Consensus 5 LrkLRyal~l~d~~m~~if~l~~~~vs~~el~a~lrk 41 (68)
T PF07308_consen 5 LRKLRYALDLKDDDMIEIFALAGFEVSKAELSAWLRK 41 (68)
T ss_pred HHHHHHHHcCChHHHHHHHHHcCCccCHHHHHHHHCC
Confidence 5678888888888888888876666788888877654
No 90
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=20.47 E-value=1.9e+02 Score=18.81 Aligned_cols=41 Identities=5% Similarity=-0.073 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcHHHHHHHHH
Q 016563 212 KSPAELKLMRESASIGCQA-LLQTMLHSKSHPYEGLLAAKFE 252 (387)
Q Consensus 212 Ks~~EI~~mr~A~~i~~~a-~~~~~~~~~~G~tE~el~a~l~ 252 (387)
=|++|-+.+.+|...-... ...+.+.+-++.|..++.....
T Consensus 4 Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~ 45 (48)
T PF00249_consen 4 WTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQ 45 (48)
T ss_dssp S-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3788888888888887776 7777666656888888876654
No 91
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=20.37 E-value=70 Score=18.87 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHH
Q 016563 51 GISAEEYISRRKRL 64 (387)
Q Consensus 51 ~i~~~ey~~R~~~L 64 (387)
++|.+|..+|++++
T Consensus 15 ~ls~ee~~~RL~~i 28 (28)
T PF12368_consen 15 GLSEEEVAERLAAI 28 (28)
T ss_pred CCCHHHHHHHHHcC
Confidence 57789999998753
No 92
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=20.23 E-value=5.3e+02 Score=21.76 Aligned_cols=17 Identities=18% Similarity=0.503 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHH
Q 016563 315 CGSFSSLEEALYDLILQ 331 (387)
Q Consensus 315 ~G~~s~~q~~~y~~v~~ 331 (387)
.|.+++.|+++|+.++.
T Consensus 121 ~~~ftp~q~~~~~~~I~ 137 (147)
T COG5435 121 PGEFTPSQKKAWEQVIQ 137 (147)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 38999999999988765
Done!