RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016563
(387 letters)
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 203 bits (519), Expect = 2e-61
Identities = 113/345 (32%), Positives = 180/345 (52%), Gaps = 39/345 (11%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
++ +E+ RR+ LL + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 1 MTQQEFQRRRQALLAKMQPGSAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVL 60
Query: 112 VLSHECGLCMFMPETSAHDV-----------IWKGQIAGVDAAPETFKADKAYPMSKIQE 160
VL +T H V IW G+ G DAAPE D+A P S+I +
Sbjct: 61 VLIKS-------DDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALPFSEINQ 113
Query: 161 ILPDMIGRSSKLFHNQ-ETAVQ---TYTNLEAFQKADFYGAVRNLS---RLT------HE 207
L ++ ++H Q E A ++ LE +K G+ +NL+ LT HE
Sbjct: 114 QLYQLLNGLDVVYHAQGEYAYADEIVFSALEKLRK----GSRQNLTAPATLTDWRPWVHE 169
Query: 208 LRWVKSPAELKLMRESASIGCQALLQTMLHSKSHP--YEGLLAAKFEYECKMRGAQRMAF 265
+R KSP E+ ++R + I A + M K P +E L + +E GA+ ++
Sbjct: 170 MRLFKSPEEIAVLRRAGEISALAHTRAM--EKCRPGMFEYQLEGEIHHEFNRHGARYPSY 227
Query: 266 NPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEAL 325
N +VG G N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +
Sbjct: 228 NTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREI 287
Query: 326 YDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
YD++L++ + L L PGTS+ ++ V ++ GL ++GI+ D
Sbjct: 288 YDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGD 332
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 180 bits (460), Expect = 7e-55
Identities = 66/154 (42%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAA 276
++LMR++ I +A M S+ E L A+FEYE + RGA R+A++ +V G NAA
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGA-RLAYSYIVAAGSNAA 59
Query: 277 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKEC 336
++HY NDQ + DGDLVL+D G E GY SD+TRT+P G F+ + LY+ +L K
Sbjct: 60 ILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAA 119
Query: 337 LELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
+ C PG S IH + +L +GLKE+GI+ D
Sbjct: 120 IAACKPGVSYEDIHLLAHRVLAEGLKELGILKGD 153
>gnl|CDD|218491 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain. This domain
is structurally very similar to the creatinase
N-terminal domain (pfam01321). However, little or no
sequence similarity exists between the two families.
Length = 134
Score = 148 bits (377), Expect = 4e-44
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
I A+E+ RR RLL +LP NS AIL APEK YP+RQD+++ Y+TG +P V
Sbjct: 1 IPAKEFAERRARLLALLPPNSAAILPGAPEKYRNRDTEYPFRQDSDFYYLTGFNEPDAVL 60
Query: 112 VLSHECG--LCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRS 169
VL +F+P IW G+ G + A E F D+AYP+ ++ EILP+++ +
Sbjct: 61 VLKDGDTGKSTLFVPPKDPEYEIWDGRRPGPEEAKEKFGVDEAYPIDELDEILPELLEGA 120
Query: 170 SKLFHNQET 178
+++ T
Sbjct: 121 ETVYYALGT 129
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 149 bits (379), Expect = 1e-41
Identities = 75/302 (24%), Positives = 134/302 (44%), Gaps = 13/302 (4%)
Query: 70 ENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGG---VAVLSHECG-LCMFMPE 125
E + + +N+ Y+TG G A+L G +F+
Sbjct: 9 EYRARLARLRELMEEAGLDALLLTSPSNFYYLTGFDAFGFERLQALLVPAEGEPVLFVRG 68
Query: 126 TSAHDVIWKGQIAGVDAAPETFKADKAY--PMSKIQEILPDMIGRSSKLFHNQETAVQTY 183
I + E ++ D+ P+ + +L ++ ++ + T
Sbjct: 69 RDEEAAKETSWIKLEN--VEVYEDDEDPAAPLDLLGALLEELGLAGKRIGIESASIFLTL 126
Query: 184 TNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPY 243
E Q A + + S L LR +KSPAE+ +R++A I AL + +
Sbjct: 127 AAFERLQAALPRAELVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMT 186
Query: 244 EGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHG 303
E +AA+ EY + GA+ +F+ +V G NAA+ HY+ +D+K+ DGDLVL+D+G +G
Sbjct: 187 EAEIAAELEYALRKGGAEGPSFDTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNG 246
Query: 304 YVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKE 363
Y SD+TRT+ P G S + +Y+ +L+ + + PG + ++ R+ L++
Sbjct: 247 YCSDITRTF-PIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVD----AAARQVLEK 301
Query: 364 IG 365
G
Sbjct: 302 AG 303
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain. However, little or no sequence
similarity exists between the two families.
Length = 135
Score = 133 bits (336), Expect = 6e-38
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
I A EY +RR+RL L SVA+L A PEK+ ++ YP+RQD+++ Y+TG +P V
Sbjct: 1 IPAAEYAARRRRLAAKLFPGSVAVLPAGPEKVRSNDTDYPFRQDSDFYYLTGFDEPDAVL 60
Query: 112 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 166
VL + +F+P D +W G G++ A E F D+ YP+ ++ +LP ++
Sbjct: 61 VLDPSGGGGK--STLFVPPRDPEDELWDGPRLGLEEAKEKFGVDEVYPIDELDAVLPGLL 118
Query: 167 GRSSKLFHNQET 178
+ +++
Sbjct: 119 AGAGTVYYLLGR 130
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 122 bits (308), Expect = 4e-33
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
Query: 218 KLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYEC-KMRGAQRMAFNPVVGGGPNAA 276
+LMR++A I AL + + E LAA+ E GA+ AF P+V GPNAA
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGARGPAFPPIVASGPNAA 60
Query: 277 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKEC 336
V HY +D+ + DGDLVL+DVG E GY SD+TRT+ G + + LY+ +L+ +
Sbjct: 61 VPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTF-VVGKPTPEQRELYEAVLEAQEAA 119
Query: 337 LELCMPGTSLLQIHHYSVGMLRKG 360
+ PG + + + +L +G
Sbjct: 120 IAAVKPGVTGGDVDAAAREVLEEG 143
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 96.4 bits (241), Expect = 2e-23
Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 9/138 (6%)
Query: 217 LKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYECKMRGAQRMAFNPVVGGG 272
++L+R++A I +A G+ +AA+ EY + GA+ +F+ +V G
Sbjct: 1 IELLRKAARIADKA----FEELLEFIKPGMTEREVAAELEYFMRKLGAEGPSFDTIVASG 56
Query: 273 PNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 332
PN+A+ H +D+KI++GDLVL+D G GY SD+TRT G S + +Y+++L+
Sbjct: 57 PNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTV-AVGEPSDELKEIYEIVLEA 115
Query: 333 NKECLELCMPGTSLLQIH 350
+ ++ PG + ++
Sbjct: 116 QQAAIKAVKPGVTAKEVD 133
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 76.7 bits (189), Expect = 2e-16
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
Query: 217 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAA 276
+ +R++A I A+ + E +AA E + G A +VG G A
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGY-PAGPTIVGSGARTA 59
Query: 277 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKEC 336
+ HY +D+++ +GDLVL+D+G GY +D+TRT+ G S + LY+ + + +
Sbjct: 60 LPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTF-VIGEPSDEQRELYEAVREAQEAA 118
Query: 337 LELCMPGTSLLQIHHYSVGMLRKGLKEIG 365
L PG + ++ R+ L+E G
Sbjct: 119 LAALRPGVTAEEVDA----AAREVLEEHG 143
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 68.8 bits (168), Expect = 8e-13
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 208 LRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNP 267
LR +K+P E++ +R + I + ++ E +AA+ E+ + +GA++ +F+
Sbjct: 124 LRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDT 183
Query: 268 VVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEE---- 323
+V G A+ H +D+ + G+ V +D G GY SDMTRT G S E
Sbjct: 184 IVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLF 243
Query: 324 ALYDLILQTNKECLELCMPGTSLLQI 349
+Y ++LQ + PG Q+
Sbjct: 244 NVYQIVLQAQLAAISAIRPGVRCQQV 269
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional.
Length = 443
Score = 61.4 bits (150), Expect = 2e-10
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 38/181 (20%)
Query: 206 HELRWVKSPAELKLMRES---ASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR---- 258
H R K+ EL MRE+ A G +A E A E++ +
Sbjct: 156 HYHRAYKTDYELACMREAQKIAVAGHRA-----------AKEAFRAGMSEFDINLAYLTA 204
Query: 259 ---GAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDL-VLMDVGCELHGYVSDMTRTWPP 314
+ + +V +AAV+HY++ D + L+D G E +GY +D+TRT+
Sbjct: 205 TGQRDNDVPYGNIVALNEHAAVLHYTKLDHQAPAEMRSFLIDAGAEYNGYAADITRTY-- 262
Query: 315 CGSFSSLEEALY-DLILQTNKECLELC---MPGTSLLQIH---HYSVGMLRKGLKEIGIV 367
++ E+ + LI NKE L L PG S + +H H + L L++ IV
Sbjct: 263 ----AAKEDNDFAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKL---LRKFQIV 315
Query: 368 N 368
Sbjct: 316 T 316
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 52.4 bits (126), Expect = 1e-07
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVG 270
+KSP E++ +R++ + + L + G+ + + K + A +G
Sbjct: 3 LKSPDEIEKIRKAGRLAAEVLE----ELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLG 58
Query: 271 --GGP-------NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 321
G P N VIH + + + DGD+V +DVG GY D +T+ G S
Sbjct: 59 YYGFPGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTF-LVGKISPE 117
Query: 322 EEALYDLILQTNKECL----ELCMPGTSLLQI 349
E L L+ +E L E PG + +I
Sbjct: 118 AEKL----LECTEESLYKAIEEAKPGNRIGEI 145
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 44.9 bits (107), Expect = 2e-05
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 247 LAAKFEYECKMRGAQRM----AFNPVVGGGPNAAVIHYSRNDQ---KIDDGDLVLMDVGC 299
A K E R Q+ +F+ + G GPN A++HYS ++ KI L L+D G
Sbjct: 35 AADKLEE---FRRQQKGYVGLSFDTISGFGPNGAIVHYSPTEESNRKISPDGLYLIDSGG 91
Query: 300 ELHGYVSDMTRTWP 313
+ +D+TRT
Sbjct: 92 QYLDGTTDITRTVH 105
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 44.9 bits (107), Expect = 3e-05
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 274 NAAVIHYSRNDQK-IDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 332
N V H D+K + +GD+V +DVG + GY+ D T+ + + +L+
Sbjct: 73 NEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFV----VGEVSDEDAKRLLEA 128
Query: 333 NKECLELCM----PGTSLLQIHH 351
KE L + PG L I
Sbjct: 129 TKEALYAGIEAVKPGARLGDIGR 151
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 45.0 bits (106), Expect = 4e-05
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Query: 204 LTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRM 263
L +E+R +KSP E++ +R+SA I + + L A F+
Sbjct: 170 LFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNF 229
Query: 264 A-FNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLE 322
+ FN + G + I K+ GDL+ D G ++ GY +D+ RT+ G L
Sbjct: 230 SRFNLISVGDNFSPKIIADTTPAKV--GDLIKFDCGIDVAGYGADLARTF-VLGEPDKLT 286
Query: 323 EALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK 359
+ +YD I ++ L + PG L + ++ +++
Sbjct: 287 QQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKT 323
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 42.8 bits (102), Expect = 1e-04
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N V H +D+ + +GD+V +DV GY D +RT+ G S ++ L +
Sbjct: 73 NEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTF-GVGEISPEDKRL----CEVT 127
Query: 334 KECLEL----CMPGTSLLQIHH 351
KE L L PG L I H
Sbjct: 128 KEALYLGIAAVKPGARLGDIGH 149
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 43.2 bits (101), Expect = 2e-04
Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 2/158 (1%)
Query: 202 SRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ 261
S + +ELR +KSP E+K +R+SA I + + + L A ++ +
Sbjct: 169 SSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSET 228
Query: 262 RMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 321
+ ++ G + + N K GDL+ D G ++ GY +D+ RT+ G +
Sbjct: 229 HFSRFHLISVGADFSPKLIPSN-TKACSGDLIKFDCGVDVDGYGADIARTF-VVGEPPEI 286
Query: 322 EEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK 359
+Y I ++ L + PG + + ++ +++K
Sbjct: 287 TRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK 324
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 42.8 bits (100), Expect = 2e-04
Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 2/158 (1%)
Query: 202 SRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ 261
S + +ELR +KSP E+K +R+SA I + + + L A ++ +
Sbjct: 86 SSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSET 145
Query: 262 RMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 321
+ ++ G + + N K GDL+ D G ++ GY +D+ RT+ G +
Sbjct: 146 HFSRFHLISVGADFSPKLIPSN-TKACSGDLIKFDCGVDVDGYGADIARTF-VVGEPPEI 203
Query: 322 EEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK 359
+Y I ++ L + PG + + ++ +++K
Sbjct: 204 TRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK 241
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 40.6 bits (96), Expect = 6e-04
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N V H +D+ + DGD+V +DVG EL GY D RT+ G S EEA +++
Sbjct: 63 NEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTF-IVGEVS--EEAKK--LVEVT 117
Query: 334 KECLEL----CMPGTSLLQIHH 351
+E L PG + I H
Sbjct: 118 EEALYKGIEAVKPGNRIGDIGH 139
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 39.2 bits (91), Expect = 0.003
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 290 GDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQI 349
GD+VL+ +G +GY S+M+RT S ++ Y+ + K L L PGT I
Sbjct: 270 GDVVLLSIGIRYNGYCSNMSRTI--LTDPDSEQQKNYEFLYMLQKYILGLVRPGTDSGII 327
Query: 350 HHYSVGMLRKGLKEIG 365
+ + + E+G
Sbjct: 328 YSEAEKYISSNGPELG 343
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 36.7 bits (86), Expect = 0.011
Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 35/118 (29%)
Query: 210 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKF-----EYECKMRGAQRMA 264
+KSP EL+ MR+ I AL + M P G+ + + + GA +
Sbjct: 9 EIKSPRELEKMRKIGRIVATAL-KEMG-KAVEP--GMTTKELDRIAEKRLEEH-GA-IPS 62
Query: 265 F---------------NPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSD 307
V G P VI DGDLV +DV L GY D
Sbjct: 63 PEGYYGFPGSTCISVNEEVAHGIPGPRVIK---------DGDLVNIDVSAYLDGYHGD 111
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 34.4 bits (79), Expect = 0.081
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 274 NAAVIHYSRN---DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL----EEALY 326
N H++ DGD+V +D+G + GY++D T + +L ++ALY
Sbjct: 59 NECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQYDNLVKAAKDALY 118
Query: 327 DLI 329
I
Sbjct: 119 TAI 121
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 33.5 bits (77), Expect = 0.13
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 273 PNAAVIHYS----RNDQKIDDGDLVLMDVGCELHGYVSDMTRT 311
N V H+S + DGD+V +D+GC + GY++ + T
Sbjct: 65 VNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHT 107
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 32.8 bits (76), Expect = 0.23
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 275 AAVIHY--SRNDQK-IDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEA 324
AA HY S D++ +GD+V +D+G + GY++D T G + L EA
Sbjct: 59 AA--HYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKYEDLVEA 109
>gnl|CDD|238524 cd01091, CDC68-like, Related to aminopeptidase P and aminopeptidase
M, a member of this domain family is present in cell
division control protein 68, a transcription factor.
Length = 243
Score = 31.5 bits (72), Expect = 0.56
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 263 MAFNPVVGGGPNAAVIHYSRNDQK--IDDGDLVLMDVGCELHGYVSDMTRTW---PPCGS 317
+ P++ G N ++ S + K G +++ +G Y S++ RT+ P
Sbjct: 63 WCYPPIIQSGGNYDLLKSSSSSDKLLYHFG-VIICSLGARYKSYCSNIARTFLIDP---- 117
Query: 318 FSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK 359
+S ++ Y+ +L +E L+ PG L ++ ++ ++K
Sbjct: 118 -TSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKK 158
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 30.6 bits (69), Expect = 1.2
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 273 PNAAVIHYS--RNDQK--IDDGDLVLMDVGCELHGYVSDMTRT 311
N V H+S ++DQ + +GD+V +D+GC + G+++ + T
Sbjct: 83 VNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHT 125
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 30.6 bits (69), Expect = 1.5
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 25/176 (14%)
Query: 209 RWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYECKMRGAQRM- 263
R VKSP E+ MR +A I + + + P G+ L A+ Y+ +RGA
Sbjct: 156 RAVKSPTEIAYMRIAARI--VENMHQRIFERIEP--GMRKCDLVAEI-YDAGIRGADGFG 210
Query: 264 ----AFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRT---WPPCG 316
A P++ G +A+ H + +D + G+ ++ Y ++RT P
Sbjct: 211 GDYPAIVPLLPSGADASAPHLTWDDSPMKKGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQ 270
Query: 317 SFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGT 372
+F E+A +L+ + L PG + I + K LK+ GI T
Sbjct: 271 AFLDAEKA----VLEGMEAGLAAAKPGNTCEDI---ANAFF-KVLKKYGIHKDSRT 318
>gnl|CDD|131834 TIGR02787, codY_Gpos, GTP-sensing transcriptional pleiotropic
repressor CodY. This model represents the full length
of CodY, a pleiotropic repressor in Bacillus subtilis
and other Firmicutes (low-GC Gram-positive bacteria)
that responds to intracellular levels of GTP and
branched chain amino acids. The C-terminal
helix-turn-helix DNA-binding region is modeled by
pfam08222 in Pfam [Regulatory functions, DNA
interactions].
Length = 251
Score = 30.1 bits (68), Expect = 1.9
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 245 GLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMD-----VGC 299
L E P+ GGG + +R+D++ +D DLVL + VG
Sbjct: 92 ELTVFPEESRDLFPKG-LTTIVPIYGGGERLGTLILARSDKEFNDDDLVLAEYAATVVGM 150
Query: 300 EL 301
EL
Sbjct: 151 EL 152
>gnl|CDD|204331 pfam09851, SHOCT, Short C-terminal domain.
Length = 31
Score = 26.5 bits (60), Expect = 2.0
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 41 QLMKEGEITPGISAEEYISRRKRLLE 66
+L GEIT EE+ +++K LL
Sbjct: 10 ELYARGEIT----EEEFEAKKKELLG 31
>gnl|CDD|226044 COG3513, COG3513, Predicted CRISPR-associated nuclease, contains
McrA/HNH-nuclease and RuvC-like nuclease domain [Defense
mechanisms].
Length = 1088
Score = 30.3 bits (68), Expect = 2.2
Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 17/150 (11%)
Query: 44 KEGEITPGISAEEYIS-RRKRLLEILPENSVAILAAAPEKMMTDVVPYP-----YRQDAN 97
K G+ G A ++ RK L ILP N+ IL A E+M P P Y+Q
Sbjct: 269 KAGKNAYG--ASRFVWLTRKNNLRILPWNTEEILDTAIERMTLLDEPLPKEKLTYKQSLK 326
Query: 98 YLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSK 157
L ++ + V + FM + +I A + D +
Sbjct: 327 LLGLSDYNEFTKVRYIKENAEKTTFMEGKAYKAII--------KALFKQGLEDSFNSSNL 378
Query: 158 IQEILPDMIGRSSKLFHNQETAVQTYTNLE 187
+ L IG+ L N E V+ T E
Sbjct: 379 SYDDL-LEIGKDFSLLKNLEDIVKALTKFE 407
>gnl|CDD|188032 TIGR00195, exoDNase_III, exodeoxyribonuclease III. The model
brings in reverse transcriptases at scores below 50,
model also contains eukaryotic apurinic/apyrimidinic
endonucleases which group in the same family [DNA
metabolism, DNA replication, recombination, and repair].
Length = 254
Score = 29.7 bits (67), Expect = 2.4
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 59 SRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANY-LYITGCQQPGGVAVLSHE 116
+R + L L EN +L K+ + P Y ++ +G + GVA+ S E
Sbjct: 13 ARPHKGLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQKGYSGVAIFSKE 71
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 29.4 bits (66), Expect = 2.8
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N + H ND + +GD++ +DV C + GY D +R G S +++ + L+
Sbjct: 113 NEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRM-VMIGEVSEIKKKVCQASLECL 171
Query: 334 KECLELCMPGTSLLQI 349
+ + PG L +I
Sbjct: 172 NAAIAILKPGIPLYEI 187
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 28.2 bits (63), Expect = 3.6
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 172 LFHNQETAVQTYTN-LEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQA 230
L + ++ TN LEA D AV+ L + T+EL W + L E A
Sbjct: 44 LLARLQEFIKRTTNALEAL---DPTTAVQELFKFTNELNWYLDELKPALQTEELREAVLA 100
Query: 231 LLQTML 236
+L+ L
Sbjct: 101 VLRAAL 106
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 29.0 bits (65), Expect = 5.0
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 274 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 333
N + H + +K++DGD+V +DV G D+ T+ +++EA L+ +
Sbjct: 205 NEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLNETF----FVGNVDEASRQLV-KCT 259
Query: 334 KECLE----LCMPG 343
ECLE + PG
Sbjct: 260 YECLEKAIAIVKPG 273
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 28.4 bits (64), Expect = 6.4
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 279 HYSRN---DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEA 324
HY+ N D + +GD+V +D G + GY++D T + L EA
Sbjct: 60 HYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTVDFDPKYDDLLEA 108
>gnl|CDD|224163 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function
prediction only].
Length = 312
Score = 28.4 bits (64), Expect = 6.5
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 44 KEGEITPGISAEEYISRRKRLLEILPENSVA--ILAAAPEKMM 84
++G + +S EEY+ LE LP V I AP +
Sbjct: 233 EKGRLKF-LSLEEYVELVCDQLEHLPPEVVIHRITGDAPRDTL 274
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,689,340
Number of extensions: 1877831
Number of successful extensions: 1462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1445
Number of HSP's successfully gapped: 41
Length of query: 387
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 288
Effective length of database: 6,546,556
Effective search space: 1885408128
Effective search space used: 1885408128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)