RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016563
(387 letters)
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 368 bits (947), Expect = e-125
Identities = 104/332 (31%), Positives = 170/332 (51%), Gaps = 13/332 (3%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VLSHECG----LCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIG 167
VL +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLN 122
Query: 168 RSSKLFH----NQETAVQTYTNLEAFQKADFYGA-----VRNLSRLTHELRWVKSPAELK 218
++H V + LE +K + + + HE+R KSP E+
Sbjct: 123 GLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVVHEMRLFKSPEEIA 182
Query: 219 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVI 278
++R + I A + M + +E L + +E GA+ ++N +VG G N ++
Sbjct: 183 VLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 279 HYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLE 338
HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++ + L
Sbjct: 243 HYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLR 302
Query: 339 LCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
L PGTS+L++ V ++ GL ++GI+ D
Sbjct: 303 LYRPGTSILEVTGEVVRIMVSGLVKLGILKGD 334
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 365 bits (940), Expect = e-125
Identities = 78/344 (22%), Positives = 166/344 (48%), Gaps = 13/344 (3%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
+ ++ + R+RL+ LP+ S+ IL A M+ Y + + N+ Y+TG +P +
Sbjct: 1 MKSKFFAQNRERLVNTLPDESITILFAGQAPHMSADAHYKFVPNRNFYYVTGIDEPNVIF 60
Query: 112 VL---SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGR 168
+L + +F+ ++ W G+ + A + K + ++ + ++
Sbjct: 61 MLKKFGNSVEETLFIEKSDPVMEKWVGKTVSNEEAEKISGIKKVIYLDSFEKTMSNIFFT 120
Query: 169 SSKLFHN--------QETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLM 220
+ + T +T + ++ + + N+ ELR K+ E++++
Sbjct: 121 ENVKHLYLDLECREWKGTETKTLAFAKHVREQYPHVTIGNVYPNICELRVFKTDEEIEII 180
Query: 221 RESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHY 280
+E+ ++ + + H+K+ E L A+F++ K G + AFN ++ G NA V+HY
Sbjct: 181 KEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFTLKSSGIKHHAFNTILASGKNATVLHY 240
Query: 281 SRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELC 340
ND +I +GDLVL+D+G + Y +D++ T+P G+FSS ++ +Y+++L KE E+
Sbjct: 241 EDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNALKETTEII 300
Query: 341 MPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIG 384
PG ++ ++ +L +G K +G++ D ++ +
Sbjct: 301 KPGLKFAALNEHAKKVLAEGCKAVGLIQEDEE--LSKYYYHGVS 342
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 329 bits (846), Expect = e-110
Identities = 82/350 (23%), Positives = 150/350 (42%), Gaps = 15/350 (4%)
Query: 35 TPASHPQLMKEGEITPGISAEEYISRRKRLLEILPEN------SVAILAAAPEKMMTDV- 87
A+ P G T + + R+RL E L +N S+ +L E
Sbjct: 3 AAATGPSFWL-GNETLKVPLALFALNRQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTD 61
Query: 88 VPYPYRQDANYLYITGCQQPGGVAVLSHECG-LCMFMPETSAHDVIWKGQIAGVDAAPET 146
+RQ++ + + G +PG V+ + G +F+P A W G+I + E
Sbjct: 62 TGVLFRQESFFHWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEK 121
Query: 147 FKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKAD-FYGAVRNLSRLT 205
+ D + +I +L T + +F F L
Sbjct: 122 YAVDDVQYVDEIASVLTSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEI 181
Query: 206 HELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR-GAQRMA 264
E R K+ EL+++R + I +A + M K E L + FE+ C R G + +
Sbjct: 182 VECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSS 241
Query: 265 FNPVVGGGPNAAVIHYSR----NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSS 320
+ + G G N+AV+HY ND+ I +GD+ L D+G E + + SD+T ++P G F++
Sbjct: 242 YTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTA 301
Query: 321 LEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD 370
++A+Y+ +L++++ + PG +H + + + L +GI++
Sbjct: 302 DQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGS 351
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 239 bits (611), Expect = 4e-75
Identities = 56/322 (17%), Positives = 115/322 (35%), Gaps = 19/322 (5%)
Query: 54 AEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYL-YITGCQQPGGVAV 112
EE +R + L+ + + I + +++ D YP++ + + ++ P V
Sbjct: 12 IEELQARTREALQREGLDGLVIHSGQGKRLFLDDNHYPFKVNPQFKAWVPVIDNPNCWLV 71
Query: 113 LSHECG-LCMFMPETSAHDVIWKGQIAGV-DAAPETFKADKAYPMSKIQEILPDMIGRSS 170
++ +F + W D ++F +++ LP R +
Sbjct: 72 VNGVDKPTLIFYRP----EDFWHKVPPEPNDFWTDSFDIKLLQQADAVEKFLPYDKSRFA 127
Query: 171 KLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQA 230
+ E A F + + H R K+ EL MRE+ +
Sbjct: 128 YVGEYIEVA-----KALGFDNVNP----DRVLHYLHYQRAYKTDYELDCMREANKLAVAG 178
Query: 231 LLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQK-IDD 289
+ E + + +G + + +V +A+++HY + D +
Sbjct: 179 HKAAEQAFREGKSEFDINLAYAAAS-RQGDNDVPYTSIVALNEHASILHYMQCDTVAPKE 237
Query: 290 GDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEE-ALYDLILQTNKECLELCMPGTSLLQ 348
L+D G HGY +D+TRT+ G +S L + + ++ PG +
Sbjct: 238 SRSFLIDAGANYHGYAADITRTYAQEGVHNSAMFRDLIQAVDKVTLTLVDSLKPGVAYTD 297
Query: 349 IHHYSVGMLRKGLKEIGIVNSD 370
IH + + + L + G+VN
Sbjct: 298 IHLLAHDGIAQILHDTGMVNLT 319
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 240 bits (614), Expect = 7e-75
Identities = 53/320 (16%), Positives = 104/320 (32%), Gaps = 20/320 (6%)
Query: 55 EEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYL-YITGCQQPGGVAVL 113
R + ++E + V + ++ D + YP++ + + ++ P V
Sbjct: 13 ATLQKRTREIIERENLDGVVFHSGQAKRQFLDDMYYPFKVNPQFKAWLPVIDNPHCWIVA 72
Query: 114 SHECGLC-MFMPETSAHDVIWKGQIAGVD-AAPETFKADKAYPMSKIQEILPDMIGRSSK 171
+ +F D W + + F + +++++LP R +
Sbjct: 73 NGTDKPKLIFYRP---VD-FWHKVPDEPNEYWADYFDIELLVKPDQVEKLLPYDKARFAY 128
Query: 172 LFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQAL 231
+ E A L + + H R K+ EL MRE+ I Q
Sbjct: 129 IGEYLEVAQALGFELMNPEP---------VMNFYHYHRAYKTQYELACMREANKIAVQGH 179
Query: 232 LQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRND-QKIDDG 290
E + + + + +V N A++HY+ D
Sbjct: 180 KAARDAFFQGKSEFEIQQAYLLATQ-HSENDNPYGNIVALNENCAILHYTHFDRVAPATH 238
Query: 291 DLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIH 350
L+D G +GY +D+TRT+ G L + Q + PG ++H
Sbjct: 239 RSFLIDAGANFNGYAADITRTYDFTGEGEF--AELVATMKQHQIALMNQLAPGKLYGELH 296
Query: 351 HYSVGMLRKGLKEIGIVNSD 370
+ + L + IV+
Sbjct: 297 LDCHQRVAQTLSDFNIVDLS 316
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 135 bits (341), Expect = 2e-36
Identities = 54/303 (17%), Positives = 113/303 (37%), Gaps = 44/303 (14%)
Query: 56 EYISRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLS 114
+ + +RL E + IL + Y+ GV ++S
Sbjct: 2 NAMEKIERLRSAFDEAGIDGILLTNEH---------------SRRYMANFTGTAGVVLIS 46
Query: 115 HECGLCMFMP---ETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSK 171
+ A +I + ++ + + ++ G
Sbjct: 47 KK-RAQFITDFRYVEQASKQAVGYEIVQ----------HAGLIIDEVAKQVKEL-GIQKL 94
Query: 172 LFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQAL 231
F +Y+ + A+F S L +LR +K+ +E+K+++E+A I A
Sbjct: 95 GFEQDTLTYSSYSAHKEAIDAEF----IPTSGLVEKLRLIKTDSEIKILKEAAQIADAAF 150
Query: 232 LQTMLHSKSHPYEGL----LAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKI 287
+ + G+ ++ + E+ + +GA +F+ +V G +A+ H +++ I
Sbjct: 151 EHILSFIR----PGVSEIEVSNELEFFMRKQGATSSSFDIIVASGLRSALPHGVASEKVI 206
Query: 288 DDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLL 347
+ GD V +D G GY SD+TRT G S + +Y+++L+ + G +
Sbjct: 207 ETGDFVTLDFGAYYKGYCSDITRTI-AVGEPSDKLKEIYNIVLEAQLRGVNGIKAGLTGR 265
Query: 348 QIH 350
+
Sbjct: 266 EAD 268
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 135 bits (340), Expect = 9e-36
Identities = 47/352 (13%), Positives = 113/352 (32%), Gaps = 46/352 (13%)
Query: 52 ISAEEYISRRKRLLEILPE-----------NSVAILAAAPEKMMTDVVPYPYRQD-ANYL 99
I + R LL +S+ + A + PY++ A +
Sbjct: 8 IDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHD------DTNPYQKSTALHT 61
Query: 100 YITGCQQPGGVAVLSHECGLCMFMPETSAH-DVIWKGQIAGVDAAPETFKADKAYPMSKI 158
++ G + P + +L + + + + + A D D
Sbjct: 62 WLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLF 121
Query: 159 QEILPDMIGRSSKL--FHNQETAVQTYTNLEAFQKADFYGA-VRNLSRLTHELRWVKSPA 215
++I+ + + K+ F +T + ++ + + + S + +K
Sbjct: 122 EKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQ 181
Query: 216 ELKLMRESASIGCQAL-------LQTMLHSKSHPYEGLLAAKFEYECKM----------- 257
EL ++ ++ + + L T + + + E
Sbjct: 182 ELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKL 241
Query: 258 ----RGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWP 313
+ P++ G + + + D + GD+VL +G Y S++ RT+
Sbjct: 242 GDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTY- 300
Query: 314 PCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIG 365
S ++ Y ++ K+ E C G + I+ +G++R ++
Sbjct: 301 -LFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLE 351
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 130 bits (328), Expect = 1e-34
Identities = 52/300 (17%), Positives = 124/300 (41%), Gaps = 38/300 (12%)
Query: 59 SRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHEC 117
R +RL++++ E + A L ++ A+ +Y +G + ++S
Sbjct: 2 DRSERLIQLISEEGIDAFL----------IMNIENSARASSVYFSGFTGSFSIILISEN- 50
Query: 118 GLCMFMP--ETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHN 175
+ T A + E + + +++ + D+ +
Sbjct: 51 TRLLITDSRYTVQ---------AKQETDFEVREVKGGDFIDVLKKTVNDL-KIKTIALEE 100
Query: 176 QETAVQTYTNL-EAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQT 234
+ ++ + + AF F + ++R VK E++ ++++ I +A L+T
Sbjct: 101 ERVSLSLFRRISSAFGDRKF----IGIDDEVKQMRMVKDEGEIEKIKQAIEISERAFLET 156
Query: 235 MLHSKSHPYEGL----LAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDG 290
+ + G+ +AA EY + GA+ +AF+ +V G +A+ H +D+ ++ G
Sbjct: 157 VQQIR----AGMTEKEIAALLEYTMRKEGAEGVAFDTIVASGCRSALPHGKASDKVVERG 212
Query: 291 DLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIH 350
D++++D G Y +D+TR G S + ++ ++L+ + L++ G + +
Sbjct: 213 DVIVIDFGATYENYCADITRVV-SIGEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLD 271
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 131 bits (330), Expect = 3e-34
Identities = 45/360 (12%), Positives = 113/360 (31%), Gaps = 54/360 (15%)
Query: 52 ISAEEYISRRKRLLEILPE-----NSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQ 106
I + + R + L E NS+ + + PY + + ++ +
Sbjct: 8 IDFDVFKKRIELLYSKYNEFEGSPNSLLFVLGSSN----AENPYQ-KTTILHNWLLSYEF 62
Query: 107 PGGVAVLSHECGLCMFMPETSAH----DVIWKGQIAGVDAAPETFKADKAYPMSKIQEIL 162
P + L + + + H ++K + + + K+ + +
Sbjct: 63 PATLIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKLFDDV 122
Query: 163 PDM-------IGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPA 215
+ +G K + + + EA K + + + ++S ++ VK
Sbjct: 123 IALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVI-DISLGLSKVWEVKDVN 181
Query: 216 ELKLMRESASIGCQAL------LQTMLHSKSHPYEGLLAAKFEYECK------------- 256
E + S+ + + + + + L+ K E +
Sbjct: 182 EQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLSPDLS 241
Query: 257 ---------MRGAQRMAFNPVVGGGPNAAV-IHYSRNDQKIDDGDLVLMDVGCELHGYVS 306
++P++ G + + + ++ +L G + Y S
Sbjct: 242 ALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCILASCGIRYNNYCS 301
Query: 307 DMTRTWPPCGSFSSLEEALYDLILQTNKECLELCM-PGTSLLQIHHYSVGMLRKGLKEIG 365
++TRT+ S YD +L KE + + PG + +++ + + K E+
Sbjct: 302 NITRTFL--IDPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKTKPELV 359
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 126 bits (318), Expect = 4e-33
Identities = 64/299 (21%), Positives = 111/299 (37%), Gaps = 40/299 (13%)
Query: 60 RRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITG-----CQQPGGVAVL 113
R ++ + +L E L + N Y+TG + + +
Sbjct: 2 RLEKFIHLLGERGFDGALISPGT---------------NLYYLTGLRLHEVGERLAILAV 46
Query: 114 SHECGLCMFMP--ETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSK 171
S E P + V+ P TF D P +K++EIL ++ +
Sbjct: 47 SAEGDYRFLAPSLYENV-----------VNNFPATFWHDGENPYAKLREILEELGISKGR 95
Query: 172 LFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQAL 231
+ + K F + LS L ELR +K E+K+M ++ I +
Sbjct: 96 ILIEDTMRADWLIGIMKLGKFTF----QPLSSLIKELRMIKDKEEVKMMEHASRIADKVF 151
Query: 232 LQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGD 291
+ + E LA K E + + +AF P+V G NAA H+ ++KI GD
Sbjct: 152 EEILTWDLIGMKERELALKIELLIR-ELSDGIAFEPIVASGENAANPHHEPGERKIRKGD 210
Query: 292 LVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIH 350
++++D G GY SD+TRT G +Y+++ + + G +
Sbjct: 211 IIILDYGARWKGYCSDITRTI-GLGELDERLVKIYEVVKDAQESAFKAVREGIKAKDVD 268
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 125 bits (317), Expect = 6e-33
Identities = 50/315 (15%), Positives = 95/315 (30%), Gaps = 48/315 (15%)
Query: 49 TPGISAEEYISRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQP 107
+ Y R + + ++ + Y+ G
Sbjct: 7 SGRFDTAVYARRLAAAAAATEQAGLAGLVITPG---------------YDLRYLIG---- 47
Query: 108 GGVAVLSHECGLCMFMPETSAHDVI--------WKGQIAGVDAAPETFKADKAYPMSKIQ 159
+ E + +P + ++ K A D P +
Sbjct: 48 --SRADTFERLTALVLPASGVPTIVLPRLELASLKESAASDLGVCVRDWVDGDDPYQLVA 105
Query: 160 EILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKL 219
L + L + + +LR VK AE+
Sbjct: 106 VALGG---APAATAVTDSMPALHLLPLADALGVLPV----LATDVLRQLRMVKEAAEVDA 158
Query: 220 MRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYECKMRGAQRMAFNPVVGGGPNA 275
+ ++ + + + G +AA G +AF +VG GP+
Sbjct: 159 LAKAGAAIDRVHARVPAFLV----PGRTEAQVAADIAEAIVAEGHSAVAF-VIVGSGPHG 213
Query: 276 AVIHYSRNDQKIDDGDLVLMDVGCELH-GYVSDMTRTWPPCGSFSSLEEALYDLILQTNK 334
A H+ +D+K+ GD+V++D+G GY SD TRT+ G S Y + + +
Sbjct: 214 ADPHHGYSDRKLQVGDIVVVDIGGTYEPGYYSDSTRTY-SIGDPSPDVAQQYSALQRAQR 272
Query: 335 ECLELCMPGTSLLQI 349
++ PG + Q+
Sbjct: 273 AAVDAVRPGVTAAQV 287
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 125 bits (315), Expect = 8e-33
Identities = 47/169 (27%), Positives = 93/169 (55%), Gaps = 1/169 (0%)
Query: 182 TYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSH 241
Y +E +K + + + ++R +KS E+K++ ++ I +A++ +
Sbjct: 98 PYGFIEELKKKANIKEFKKVDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEG 157
Query: 242 PYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCEL 301
E +AAK EY KM GA++ AF+ ++ G +A+ H +D++I+ GDLV++D+G
Sbjct: 158 KKEREVAAKVEYLMKMNGAEKPAFDTIIASGYRSALPHGVASDKRIERGDLVVIDLGALY 217
Query: 302 HGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIH 350
Y SD+TRT GS + ++ +Y+++L+ K+ +E PG + ++
Sbjct: 218 QHYNSDITRTI-VVGSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELD 265
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 115 bits (291), Expect = 4e-29
Identities = 49/322 (15%), Positives = 98/322 (30%), Gaps = 44/322 (13%)
Query: 43 MKEGEITPGI-SAEEYISRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLY 100
++ G+ SA+EY +R+ RL L ++ A + + N Y
Sbjct: 8 IRNGDKVRSTFSAQEYANRQARLRAHLAAENIDAAIFTSYH---------------NINY 52
Query: 101 ITG-CQQPGGVA---VLSHE--CGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYP 154
+ G V++ + + + +
Sbjct: 53 YSDFLYCSFGRPYALVVTEDDVISISANIDGGQPWRRTVGTDNIVYT------DWQRDNY 106
Query: 155 MSKIQEILPDMIGRSSKLFHNQETAVQTYTNL-EAFQKADFYGAVRNLSRLTHELRWVKS 213
+ IQ+ LP + +Q L + A+ +++ +R +KS
Sbjct: 107 FAAIQQALPKARRI---GIEHDHLNLQNRDKLAARYPDAEL----VDVAAACMRMRMIKS 159
Query: 214 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR------MAFNP 267
E ++R A I + E +A A M
Sbjct: 160 AEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTWT 219
Query: 268 VVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYD 327
G N H +K++ GD++ ++ + GY + + RT S L+
Sbjct: 220 WFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTL-FLDHCSDDHLRLWQ 278
Query: 328 LILQTNKECLELCMPGTSLLQI 349
+ ++ ++ L+L PG I
Sbjct: 279 VNVEVHEAGLKLIKPGARCSDI 300
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 112 bits (283), Expect = 5e-28
Identities = 41/312 (13%), Positives = 92/312 (29%), Gaps = 46/312 (14%)
Query: 53 SAEEYISRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITG-----CQQ 106
S E R RL + ++ + A+L + N Y +G +
Sbjct: 20 SZAEMTRRZBRLRAWMAKSBIDAVLFTSYH---------------NINYYSGWLYCYFGR 64
Query: 107 PGGVAVLSHECGLCM-FMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDM 165
+ + + + I D + + +
Sbjct: 65 KYAZVIBZVKAVTISKGIDGGMPWRRSFGBNIVYTD-----------WKRDNFYSAVKKL 113
Query: 166 IGRSSKL-FHNQETAVQTYTNL-EAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRES 223
+ + ++ + + L +A +F ++ R +KS E L+RZ
Sbjct: 114 VKGAKZIGIEHDHVTLBHRRZLZKALPGTEF----VDVGZPVMWZRVIKSSEEZBLIRZG 169
Query: 224 ASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVG------GGPNAAV 277
A I T + E +A A+ + ++ G N
Sbjct: 170 ARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARBFPYVELMDTWIWFQSGINTDG 229
Query: 278 IHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL 337
H B+ ++ GD++ ++ + GY + + RT +++ ++ L
Sbjct: 230 AHNPVTBRVVZRGDILSLNCFPMIFGYYTALERTL-FLZZVBDASLZIWZKNTAVHRRGL 288
Query: 338 ELCMPGTSLLQI 349
ZL PG I
Sbjct: 289 ZLIKPGARCKDI 300
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 89.7 bits (222), Expect = 1e-19
Identities = 45/308 (14%), Positives = 102/308 (33%), Gaps = 34/308 (11%)
Query: 60 RRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGV--------A 111
R +RL + + A L +M D N Y T
Sbjct: 82 RHRRLTDHVVARGYAGL------LMFD--------PLNIRYATDSTNMQLWNTHNPFRAT 127
Query: 112 VLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI-GRSS 170
+L + + M+ + S + + A + F D+ + ++ + +
Sbjct: 128 LLCADGYMVMWDYKNSPFLSEFNPLVREQRAGADLFYFDRGDKVDVAADVFANEVRILLR 187
Query: 171 KLFHNQETAVQTYTNLEAFQKADFYGA-VRNLSRLTHELRWVKSPAELKLMRESASIGCQ 229
L + G + + +T + R VK P E++ MR ++
Sbjct: 188 DHAPGLRRLAVDKVMLHGLRALQAQGFEIMDGEEVTEKARSVKGPDEIRAMRCASHACEV 247
Query: 230 ALLQTMLHSKSHPYEGL-----LAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRND 284
A+ + ++S +G+ + A E RG + ++ GP +
Sbjct: 248 AVRKMEDFARSKVGDGVTCENDIWAILHSENVRRGGE-WIETRLLASGPRSNPWFQECGP 306
Query: 285 QKIDDGDLVLMDVGCEL-HGYVSDMTRTWPPCGSFSSLEEALYDLIL--QTNKECLELCM 341
+ +++ D +G +D++R+W G + +Y + + + +E+
Sbjct: 307 RVCQRNEIISFDTDLVGAYGICTDISRSW-WIGDQKPRADMIYAMQHGVEHIRTNMEMLK 365
Query: 342 PGTSLLQI 349
PG + ++
Sbjct: 366 PGVMIPEL 373
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 4e-08
Identities = 70/451 (15%), Positives = 126/451 (27%), Gaps = 139/451 (30%)
Query: 4 LMRKLLQRISCRQVNGRRAYSTKKFVDSGQPTPASHPQLMKEGEITPGISAEEYISRRKR 63
LM + + RQ + T+ +++ + Q+ + ++ + Y+ R+
Sbjct: 94 LMSPI--KTEQRQ----PSMMTRMYIEQRDRL-YNDNQVFAKYNVS---RLQPYLKLRQA 143
Query: 64 LLEILPENSVAI----------LAAA------PEKMMTDVVPYPYRQDANYLYITGCQQP 107
LLE+ P +V I +A + M + + +L + C P
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-F-------WLNLKNCNSP 195
Query: 108 GGVAVLSHECGLCM-FMPETSA---HDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILP 163
VL L P ++ H K +I + A K Y + +L
Sbjct: 196 E--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLL 251
Query: 164 DMIGRSSKLFHNQETAVQTYTNLEAF-------------QKADFYGAVRNLSRLTHELRW 210
+ VQ AF Q DF A
Sbjct: 252 N---------------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 211 VKSPAE-LKLMRESASIGCQALLQTMLHSKSHPYE-GLLAAKFE-----------YEC-K 256
+P E L+ + Q L + +L ++P ++A C K
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 257 MRGAQRMAFNPVVGGGPNAAVIHYS-----RNDQKI----------DDGDLVLMDVGCEL 301
+ + N + P + I D +M V +L
Sbjct: 355 LTTIIESSLNVL---EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 302 HGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIH-----HYSVGM 356
H Y S + + P + S + + L+ + +H HY+
Sbjct: 412 HKY-SLVEK-QPKESTIS-----IPSIYLELKVKLEN-------EYALHRSIVDHYN--- 454
Query: 357 LRKGLKEIGIVNSDGTDPYNELNPTSIGDNY 387
+ K + D PY D Y
Sbjct: 455 IPKTFD-----SDDLIPPYL--------DQY 472
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 48.2 bits (115), Expect = 2e-06
Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 24/171 (14%)
Query: 199 RNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYE 254
+ + + + + + I + L + S G+ L K +
Sbjct: 7 HHSGEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASS----SGVSVLSLCEKGDAM 62
Query: 255 CKMRGAQRMAFNPVVGGG--------PNAAVIHYS----RNDQKIDDGDLVLMDVGCELH 302
+ + G N V H+S D + +GDLV +D+G +
Sbjct: 63 IMEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVD 122
Query: 303 GYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLE----LCMPGTSLLQI 349
G+++++ T+ + + +++ C E L PG Q+
Sbjct: 123 GFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQV 173
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 46.5 bits (111), Expect = 5e-06
Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 26/145 (17%)
Query: 216 ELKLMRESASIGCQALLQTMLHSKSHP----YEGLLAAKFEYECKMRGAQRMAFNPVVGG 271
+ + + ++ I + + P E LA E G + AF PV
Sbjct: 2 DTEKLMKAGEIAKKVR--EKAIKLARPGMLLLE--LAESIEKMIMELGG-KPAF-PV-NL 54
Query: 272 GPNAAVIHYS---RNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDL 328
N HY+ + + +GD + +DVG + G+++D T G D
Sbjct: 55 SINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTV-RVG-------MEEDE 106
Query: 329 ILQTNKECLELCM----PGTSLLQI 349
+++ KE L + G + ++
Sbjct: 107 LMEAAKEALNAAISVARAGVEIKEL 131
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 45.6 bits (109), Expect = 1e-05
Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 33/168 (19%)
Query: 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL-------LAAKFEYECKMRGAQR- 262
+K+P+E++ M+++ AL + P G L + + +++ A +
Sbjct: 16 IKTPSEIEKMKKAGKAVAVAL--REVRKVIVP--GKTAWDVETLVLEIFKKLRVKPAFKG 71
Query: 263 -MAFNPVVGGGPNAAVIH-YSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSS 320
+ N V+H ++ +GD+V +DVG G D T+ G
Sbjct: 72 YGGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTY-IVGETDE 130
Query: 321 LEEALYDLILQTNKECL----ELCMPGTSLLQI----------HHYSV 354
+ L ++ +E L ++ PG L + ++V
Sbjct: 131 RGKEL----VRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNV 174
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 46.1 bits (109), Expect = 1e-05
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 22/150 (14%)
Query: 212 KSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYECKMRGAQR----- 262
S RE+A Q M K G+ + K E + +
Sbjct: 161 ASEEIWNDFREAAEAHRQVRKYVMSWIK----PGMTMIEICEKLEDCSRKLIKENGLNAG 216
Query: 263 MAFNPVVGGGPNAAVIHYS---RNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFS 319
+AF P G N HY+ + + D+ +D G + G + D T +
Sbjct: 217 LAF-PT-GCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYD 274
Query: 320 SLEEALYDLILQTNKECLELCMPGTSLLQI 349
+L +A+ D ++ L +
Sbjct: 275 TLLKAVKDAT----NTGIKCAGIDVRLCDV 300
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 1e-05
Identities = 82/437 (18%), Positives = 129/437 (29%), Gaps = 150/437 (34%)
Query: 20 RRAYST-----KKFVDSGQPTPASHPQLMKEGEITPGISAEEYISRRKRLLEIL--PEN- 71
R Y T + S L I + AE+ ++ +LE L P N
Sbjct: 174 RDLYQTYHVLVGDLIKF------SAETL--SELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 72 -SVAILAAAPEKMMTDVVPYPY---RQDANYLYITGCQQ----PGGV-----AVLSHECG 118
L + P + P Q A+Y +T + PG + H G
Sbjct: 226 PDKDYLLSIP-------ISCPLIGVIQLAHY-VVT-AKLLGFTPGELRSYLKGATGHSQG 276
Query: 119 LCM------------FMPETSAHDVI----WKGQIAGVDAAPETFKADKAYPMSKIQEIL 162
L F S I + G + +A P T + P S +++ L
Sbjct: 277 LVTAVAIAETDSWESF--FVSVRKAITVLFFIG-VRCYEAYPNT-----SLPPSILEDSL 328
Query: 163 PDMIGRSSKLFH----NQETAVQTY---TNLEAFQKADFYGAVRN-------------LS 202
+ G S + QE VQ Y TN ++ N L
Sbjct: 329 ENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 203 RLTHELRWVKSPAELKLMRESASIGCQALLQT-MLHSKSHPYEGLLAAKFEYECKMRGAQ 261
L LR K+P+ L Q+ + S+ KF
Sbjct: 388 GLNLTLRKAKAPSGLD--------------QSRIPFSERKL-------KFSNR------- 419
Query: 262 RMAFNPVVGGGPNAAVIH--YSRNDQKIDDGDLVLMDV---GCELHGYVSDMTRTWP-PC 315
F PV A+ H + + DLV +V ++ V D T
Sbjct: 420 ---FLPV------ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD-TFDGSDLR 469
Query: 316 GSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHH---------YSVGML------RKG 360
S+ E + D I+ L + T+ + H +G+L G
Sbjct: 470 VLSGSISERIVDCII-----RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
Query: 361 LKEI--GIVNSDGTDPY 375
++ I G ++ + D Y
Sbjct: 525 VRVIVAGTLDINPDDDY 541
Score = 42.3 bits (99), Expect = 3e-04
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 22/105 (20%)
Query: 10 QRISCRQVNGRRAYSTKKFVDSGQPTPAS----HPQLMKEGEITPGI--SAEEYISRRK- 62
+++ VNG + V SG P P S + L K + G+ S + S RK
Sbjct: 364 KQVEISLVNGAKN-----LVVSG-P-PQSLYGLNLTLRKA-KAPSGLDQSRIPF-SERKL 414
Query: 63 ----RLLEI-LPENSVAILAAAPEKMMTDVVPYPYRQDANYLYIT 102
R L + P +S +L A + + D+V +A + I
Sbjct: 415 KFSNRFLPVASPFHS-HLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Score = 38.9 bits (90), Expect = 0.003
Identities = 60/378 (15%), Positives = 111/378 (29%), Gaps = 134/378 (35%)
Query: 22 AYSTKKFVDSGQPTPASHPQLMKEGEITPGISAEEYI--SR-RKRLLEILPENSVAILAA 78
AYST +P SH L E + + S+ +++ +ILPE + A
Sbjct: 3 AYST-------RPLTLSHGSL----EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD 51
Query: 79 APEKMMTDVVPYPYRQDANYL-YITGCQQPGGV--------AVLSH-ECGLCMFMPETSA 128
++V +L Y++ +P V L+ E ++
Sbjct: 52 DEPTTPAELV-------GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC---YLEGNDI 101
Query: 129 HDVIWKGQIAGVDAAPETFKAD--KAYPMSKIQEILPDMIGRSSKLFHN-QETAVQTYTN 185
H + ++ + + K Y ++I P +S LF E Q
Sbjct: 102 HALA--AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA- 158
Query: 186 LEAF--QKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPY 243
F Q G + + + EL + L QT Y
Sbjct: 159 --IFGGQ-----GNTDD---------YFE---EL-----------RDLYQT--------Y 180
Query: 244 EGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHG 303
L+ + A+ + ++ +A +++ G +
Sbjct: 181 HVLVGDLIK-----FSAET--LSELIRTTLDAEK-VFTQ---------------GLNILE 217
Query: 304 YVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSV--------- 354
++ + + T P S+ + P ++Q+ HY V
Sbjct: 218 WLENPSNT-PDKDYLLSIP----------------ISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 355 GMLRKGLKEI-----GIV 367
G LR LK G+V
Sbjct: 261 GELRSYLKGATGHSQGLV 278
Score = 35.8 bits (82), Expect = 0.029
Identities = 44/252 (17%), Positives = 79/252 (31%), Gaps = 91/252 (36%)
Query: 54 AEEYISRRK--RLLEILPEN--SVAILAAAPE---------KMMTDVVP----------- 89
A+ + +L+I+ N ++ I + M+ + +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 90 --------YPYRQDANYLYITGCQQPG----GVAVLSH--ECGLCMFMPETSA---HDVI 132
Y +R + L T QP A GL +P + H +
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL---IPADATFAGHSL- 1764
Query: 133 WKGQ------IAGV----DAAPETFK----ADKAYPMSKIQEILPDMI----GRSSKLFH 174
G+ +A V F A P ++ MI GR + F
Sbjct: 1765 --GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF- 1821
Query: 175 NQETAVQTYT----------------NLEAFQKADFY---GAVRNLSRLTHELRWVKSPA 215
+QE A+Q N+E Q Y G +R L +T+ L ++K
Sbjct: 1822 SQE-ALQYVVERVGKRTGWLVEIVNYNVENQQ----YVAAGDLRALDTVTNVLNFIKLQK 1876
Query: 216 -ELKLMRESASI 226
++ +++S S+
Sbjct: 1877 IDIIELQKSLSL 1888
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 45.5 bits (108), Expect = 1e-05
Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 22/156 (14%)
Query: 206 HELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYECKMRGAQ 261
E+ L+ R +A +A + + G+ + E +
Sbjct: 36 MEIENFTESDILQDARRAAEAHRRARYRVQSIVR----PGITLLEIVRSIEDSTRTLLKG 91
Query: 262 R----MAFNPVVGGGPNAAVIHYS----RNDQKIDDGDLVLMDVGCELHGYVSDMTRTWP 313
+ F P G N+ HY+ D + + D++ +D G G + D T
Sbjct: 92 ERNNGIGF-PA-GMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVA 149
Query: 314 PCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQI 349
+ L A + + ++ + I
Sbjct: 150 FKENLEPLLVAAREG----TETGIKSLGVDVRVCDI 181
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 44.4 bits (106), Expect = 2e-05
Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 32/167 (19%)
Query: 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL-------LAAKFEYECKMRGAQR- 262
+KSP E+++M ES + L + P G+ F AQ
Sbjct: 4 LKSPREIEMMDESGELLADVH--RHLRTFIKP--GITSWDIEVFVRDFIESHGGVAAQIG 59
Query: 263 -MAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 321
+ N + H + + DGDL+ +D+ +L G +SD ++ G +
Sbjct: 60 YEGYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSY-VVGESTPE 118
Query: 322 EEALYDLILQTNKECL----ELCMPGTSLLQI----------HHYSV 354
+ L ++ K+ L E G + I Y V
Sbjct: 119 IDRL----MEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGV 161
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 45.0 bits (107), Expect = 3e-05
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 25/120 (20%)
Query: 211 VKSPAELKLMRES-----ASIGCQAL--LQTMLHSKSHPYEGLLAAKFEYECKMRGAQRM 263
VK+ AE + MR + ++ C+ L+ + K E A K E + R Q
Sbjct: 321 VKNSAESEGMRRAHIKDAVAL-CELFNWLEKEVP-KGGVTEISAADKAE---EFRRQQAD 375
Query: 264 ----AFNPVVGGGPNAAVIHYS---RNDQKIDDGDLVLMDVGCELHGYV---SDMTRTWP 313
+F + GP A+IHY+ ++ + ++ L+D G Y +D+TRT
Sbjct: 376 FVDLSFPTISSTGPTGAIIHYAPVPETNRTLSLDEVYLIDSGA---QYKDGTTDVTRTMH 432
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 42.6 bits (101), Expect = 1e-04
Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 37/162 (22%)
Query: 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL-------LAAKFEYECKMRGAQRM 263
++P EL M + SI AL + + G+ +A + GA
Sbjct: 34 QRTPGELDAMAAAGSIVGAAL--VAVRDAAKA--GVSTLELDQVAESV---IREAGA-VP 85
Query: 264 AFNPVVG-GG--------PNAAVIH-YSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWP 313
+F +G G N V+H + DGDLV +D G L G+ D T+
Sbjct: 86 SF---LGYHGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTF- 141
Query: 314 PCGSFSSLEEALYDLILQTNKECL----ELCMPGTSLLQIHH 351
G+ +EAL + + + +PG L + H
Sbjct: 142 AVGTVIPSDEAL----SEATRLSMEAGIAAMIPGNRLTDVSH 179
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 37.9 bits (89), Expect = 0.003
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 18/86 (20%)
Query: 283 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL----E 338
+ + I +GDLV +DV +GY +D ++ G +
Sbjct: 80 SKRVIREGDLVNIDVSALKNGYYADTGISF-VVGESDD-PMK--QKVCDVATMAFENAIA 135
Query: 339 LCMPGTSLLQI----------HHYSV 354
PGT L I + V
Sbjct: 136 KVKPGTKLSNIGKAVHNTARQNDLKV 161
>1y2y_A Ribosome biogenesis protein NOP10; box H/ACA snoRNA,snoRNP,
pseudouridine, biosynthetic protein; NMR {Saccharomyces
cerevisiae} SCOP: g.41.16.1 PDB: 3u28_B 3uai_B 2aqa_A
Length = 58
Score = 31.8 bits (72), Expect = 0.033
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 18 NGRRAYSTKKFVDSGQPTPASHPQLMKEGEITPGISAEEYISRRKRLLEILP 69
+G+R Y+ KK +SG+ T ++HP +P K+ ++P
Sbjct: 10 DGKRIYTLKKVTESGEITKSAHP-----ARFSPDDKYSRQRVTLKKRFGLVP 56
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 35.0 bits (81), Expect = 0.034
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 283 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL----E 338
+ + + GD++ +D+ G SD+ T+ G + + + +L+ +T L +
Sbjct: 180 DYRPLKSGDIINIDISVFYKGVHSDLNETY-FVGDINDVPKEGKELV-ETCYFSLMEAIK 237
Query: 339 LCMPGTSLLQI----------HHYSV 354
C PG I ++SV
Sbjct: 238 KCKPGMFYKNIGTLIDAYVSKKNFSV 263
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 33.4 bits (77), Expect = 0.11
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 283 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL----E 338
+ + + +GD+V +D+ +GY D+ T+ G L +QT ECL +
Sbjct: 152 DRRPLQEGDIVNVDITLYRNGYHGDLNETF-FVGEVDDGARKL----VQTTYECLMQAID 206
Query: 339 LCMPGTSLLQI----------HHYSV 354
PG ++ + +SV
Sbjct: 207 AVKPGVRYRELGNIIQKHAQANGFSV 232
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 32.9 bits (76), Expect = 0.12
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 19/86 (22%)
Query: 283 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL----E 338
ND+ + +GD+V +DV L G+ D +R + G + + L +Q + + E
Sbjct: 85 NDKPLKNGDIVNIDVTVILDGWYGDTSRMY-YVGDVAIKPKRL----IQVTYDAMMKGIE 139
Query: 339 LCMPGTSLLQI----------HHYSV 354
+ PG L I H+YSV
Sbjct: 140 VVRPGAKLGDIGYAIQSYAEKHNYSV 165
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 32.1 bits (74), Expect = 0.22
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 19/86 (22%)
Query: 283 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL----E 338
+ I DGD+V +DV + G D T+ P G + L + +E
Sbjct: 118 DSTVITDGDIVNIDVTAYIGGVHGDTNATF-PAGDVADEHRLL----VDRTREATMRAIN 172
Query: 339 LCMPGTSLLQI----------HHYSV 354
PG +L I Y+V
Sbjct: 173 TVKPGRALSVIGRVIESYANRFGYNV 198
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 29.4 bits (67), Expect = 1.6
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 283 NDQKI-DDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL---- 337
+D K+ DGD+V +DV G+ D ++ + G + + E L + +E L
Sbjct: 82 DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMGERL----CRITQESLYLAL 136
Query: 338 ELCMPGTSLLQI----------HHYSV 354
+ PG +L +I +SV
Sbjct: 137 RMVKPGINLREIGAAIQKFVEAEGFSV 163
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
DNA-binding, DNA- directed RNA polymerase, isopeptide
bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Length = 345
Score = 28.0 bits (61), Expect = 4.9
Identities = 10/65 (15%), Positives = 20/65 (30%)
Query: 199 RNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR 258
+ ++ + AEL + + + L K E ++AA C+
Sbjct: 124 NEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRA 183
Query: 259 GAQRM 263
R
Sbjct: 184 EVART 188
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 27.5 bits (62), Expect = 8.0
Identities = 4/18 (22%), Positives = 4/18 (22%)
Query: 253 YECKMRGAQRMAFNPVVG 270
Y RG G
Sbjct: 30 YRGIPRGKVLKKTKIYAG 47
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 27.5 bits (62), Expect = 8.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 206 HELRWVKSPAELKLMR 221
EL VK ++LMR
Sbjct: 443 DELAEVKDKTAIELMR 458
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,016,290
Number of extensions: 363317
Number of successful extensions: 751
Number of sequences better than 10.0: 1
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 43
Length of query: 387
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 292
Effective length of database: 4,049,298
Effective search space: 1182395016
Effective search space used: 1182395016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)