RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016563
(387 letters)
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli
[TaxId: 562]}
Length = 176
Score = 118 bits (296), Expect = 2e-32
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 52 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 111
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 112 VLSH----ECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIG 167
VL +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLN 122
Query: 168 RSSKLFHN----QETAVQTYTNLEAFQKADFYGA-----VRNLSRLTHELRWVK 212
++H V + LE +K + + + HE+R K
Sbjct: 123 GLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVVHEMRLFK 176
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 80.9 bits (198), Expect = 5e-18
Identities = 55/165 (33%), Positives = 95/165 (57%)
Query: 213 SPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGG 272
SP E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 1 SPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSG 60
Query: 273 PNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 332
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 61 ENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLES 120
Query: 333 NKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNE 377
+ L L PGTS+L++ V ++ GL ++GI+ D + +
Sbjct: 121 LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQ 165
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 79.5 bits (195), Expect = 1e-17
Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 8/148 (5%)
Query: 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGA------QRMA 264
+K+P +++ MR + + + L + K G L
Sbjct: 3 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 62
Query: 265 FNPVVGGGPNAAVIHYSRNDQK-IDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEE 323
+ V N V H +D K + DGD+V +DV G+ D ++ + + + E
Sbjct: 63 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG-KPTIMGE 121
Query: 324 ALYDLILQTNKECLELCMPGTSLLQIHH 351
L + ++ L + PG +L +I
Sbjct: 122 RLCRITQESLYLALRMVKPGINLREIGA 149
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 66.5 bits (161), Expect = 3e-13
Identities = 41/141 (29%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Query: 212 KSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGG 271
K+ E++++ ++ I +A++ + E +AAK EY KM GA++ AF+ ++
Sbjct: 1 KTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIAS 60
Query: 272 GPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQ 331
G +A+ H +D++I+ GDLV++D+G + Y SD+TRT GS + + +Y+++L+
Sbjct: 61 GHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTI-VVGSPNEKQREIYEIVLE 119
Query: 332 TNKECLELCMPGTSLLQIHHY 352
K +E PG + ++
Sbjct: 120 AQKRAVEAAKPGMTAKELDSI 140
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 66.3 bits (160), Expect = 5e-13
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 6/111 (5%)
Query: 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR------MA 264
+KS E ++R A I + E +A A M
Sbjct: 2 IKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMD 61
Query: 265 FNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPC 315
G N H +K++ GD++ ++ + GY + + RT
Sbjct: 62 TWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLD 112
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 55.0 bits (131), Expect = 3e-09
Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 7/149 (4%)
Query: 209 RWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECK------MRGAQR 262
+K+P+E++ M+++ AL + + K
Sbjct: 2 IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYG 61
Query: 263 MAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLE 322
V ++ +GD+V +DVG G D T+ G
Sbjct: 62 GYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTY-IVGETDERG 120
Query: 323 EALYDLILQTNKECLELCMPGTSLLQIHH 351
+ L + + ++ +++ PG L + H
Sbjct: 121 KELVRVTREVLEKAIKMIKPGIRLGDVSH 149
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 54.8 bits (130), Expect = 3e-09
Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 5/146 (3%)
Query: 211 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVG 270
VK+ EL+ ++E I + +K L + + GA +
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 271 GG-----PNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEAL 325
G N V H + + I +GDLV +DV +GY +D ++ S +++ +
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 326 YDLILQTNKECLELCMPGTSLLQIHH 351
D+ + + PGT L I
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGK 148
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 44.5 bits (104), Expect = 1e-05
Identities = 27/162 (16%), Positives = 43/162 (26%), Gaps = 9/162 (5%)
Query: 200 NLSRLTHE---LRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECK 256
R T E S RE+A Q M K + K E +
Sbjct: 37 AAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSR 96
Query: 257 MRGAQRMAFNPV---VGGGPNAAVIHY---SRNDQKIDDGDLVLMDVGCELHGYVSDMTR 310
+ + G N HY + + + D+ +D G + G + D
Sbjct: 97 KLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAF 156
Query: 311 TWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHY 352
T + +L +A+ D K I
Sbjct: 157 TVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEV 198
>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex
subunit 3 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 57
Score = 29.7 bits (67), Expect = 0.063
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 18 NGRRAYSTKKFVDSGQPTPASHP 40
+G+R Y+ KK +SG+ T ++HP
Sbjct: 9 DGKRIYTLKKVTESGEITKSAHP 31
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 194
Score = 26.9 bits (59), Expect = 3.2
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 58 ISRRKR-------LLEILPENSVAILAAAPEKMMTDVVPYP------YRQDANYLYITG 103
+SRR + + E+L ++A +A + P+ YR + L
Sbjct: 13 VSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHT 71
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus
(Penicillium simplicissimum) [TaxId: 69488]}
Length = 268
Score = 26.6 bits (57), Expect = 4.8
Identities = 5/62 (8%), Positives = 24/62 (38%)
Query: 50 PGISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGG 109
P +S ++ + ++ I+ +V ++++ + + + + D ++
Sbjct: 9 PKLSLSDFNEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASA 68
Query: 110 VA 111
+
Sbjct: 69 IV 70
>d2gf4a1 a.8.10.1 (A:1-89) Nypothetical protein Vng1086c
{Halobacterium salinarium [TaxId: 2242]}
Length = 89
Score = 24.7 bits (54), Expect = 7.0
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 346 LLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELN--PTSI 383
LL++H V + + V+ Y EL+ P+ +
Sbjct: 6 LLELHEQMVNI-KDQFLGFDHVDETAFAAYEELDVEPSHV 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,444,928
Number of extensions: 66676
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 13
Length of query: 387
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,213,086
Effective search space: 363925800
Effective search space used: 363925800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)