Query 016564
Match_columns 387
No_of_seqs 200 out of 1411
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02623 pyruvate kinase 100.0 1.3E-87 2.9E-92 700.4 35.1 378 2-384 3-384 (581)
2 PF00224 PK: Pyruvate kinase, 100.0 1.3E-80 2.9E-85 621.0 24.9 277 107-386 1-284 (348)
3 PLN02762 pyruvate kinase compl 100.0 1.6E-79 3.6E-84 634.4 32.5 277 107-386 24-313 (509)
4 PTZ00066 pyruvate kinase; Prov 100.0 1.7E-79 3.7E-84 634.2 32.4 281 104-386 34-318 (513)
5 PRK06739 pyruvate kinase; Vali 100.0 1.1E-78 2.5E-83 605.4 30.7 271 109-386 2-274 (352)
6 COG0469 PykF Pyruvate kinase [ 100.0 2.9E-78 6.4E-83 619.3 31.3 279 105-386 2-284 (477)
7 PLN02461 Probable pyruvate kin 100.0 7E-78 1.5E-82 622.5 31.8 278 106-386 19-302 (511)
8 PRK09206 pyruvate kinase; Prov 100.0 1.3E-77 2.8E-82 616.8 32.7 277 107-386 1-281 (470)
9 PLN02765 pyruvate kinase 100.0 1.5E-77 3.2E-82 620.6 32.4 279 104-386 23-315 (526)
10 PRK06247 pyruvate kinase; Prov 100.0 5.7E-77 1.2E-81 611.9 31.6 275 106-386 3-278 (476)
11 cd00288 Pyruvate_Kinase Pyruva 100.0 2.9E-76 6.3E-81 609.4 32.7 277 107-386 1-282 (480)
12 PRK06354 pyruvate kinase; Prov 100.0 5.3E-76 1.2E-80 619.6 33.1 280 104-386 4-287 (590)
13 PRK14725 pyruvate kinase; Prov 100.0 5.1E-76 1.1E-80 613.8 30.5 299 84-386 115-545 (608)
14 PRK05826 pyruvate kinase; Prov 100.0 2.2E-75 4.9E-80 600.8 33.1 278 106-386 2-282 (465)
15 PRK08187 pyruvate kinase; Vali 100.0 4.2E-74 9.1E-79 593.7 29.7 298 85-386 110-428 (493)
16 TIGR01064 pyruv_kin pyruvate k 100.0 2E-71 4.4E-76 574.0 31.6 276 108-386 1-280 (473)
17 KOG2323 Pyruvate kinase [Carbo 100.0 4.3E-70 9.4E-75 557.1 24.7 296 82-386 2-302 (501)
18 PTZ00300 pyruvate kinase; Prov 100.0 7E-66 1.5E-70 528.1 30.2 250 134-386 1-255 (454)
19 TIGR03239 GarL 2-dehydro-3-deo 99.7 3.6E-16 7.8E-21 150.4 10.7 107 275-381 70-210 (249)
20 PRK10558 alpha-dehydro-beta-de 99.7 4.5E-16 9.7E-21 150.4 10.4 108 274-381 76-217 (256)
21 COG3836 HpcH 2,4-dihydroxyhept 99.6 4.5E-15 9.9E-20 140.3 10.6 112 270-381 70-216 (255)
22 PRK10128 2-keto-3-deoxy-L-rham 99.6 4.5E-15 9.7E-20 144.3 10.4 106 276-381 77-217 (267)
23 PF03328 HpcH_HpaI: HpcH/HpaI 99.6 1.8E-15 3.9E-20 142.1 6.7 104 278-384 74-192 (221)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.5 3.3E-14 7.2E-19 136.8 9.6 105 277-381 72-211 (249)
25 TIGR01588 citE citrate lyase, 99.5 9E-14 2E-18 136.3 10.5 109 275-385 71-195 (288)
26 COG2301 CitE Citrate lyase bet 99.1 8.7E-11 1.9E-15 115.0 6.9 109 275-385 66-187 (283)
27 PRK06464 phosphoenolpyruvate s 99.1 1.9E-10 4.2E-15 126.7 8.7 105 275-379 619-747 (795)
28 TIGR01418 PEP_synth phosphoeno 99.1 1.7E-10 3.7E-15 127.0 8.2 103 277-379 614-740 (782)
29 TIGR01417 PTS_I_fam phosphoeno 99.0 4.7E-10 1E-14 119.5 8.9 108 272-379 366-500 (565)
30 PRK11177 phosphoenolpyruvate-p 98.9 1.9E-09 4.2E-14 115.0 9.1 108 271-378 366-500 (575)
31 TIGR01344 malate_syn_A malate 98.9 1.8E-08 4E-13 105.6 15.2 205 107-385 66-310 (511)
32 cd00727 malate_synt_A Malate s 98.9 1.5E-08 3.3E-13 106.3 14.3 103 280-385 174-309 (511)
33 PRK09255 malate synthase; Vali 98.8 4.7E-08 1E-12 103.1 13.5 95 288-385 205-330 (531)
34 cd00480 malate_synt Malate syn 98.8 1.9E-07 4.1E-12 98.6 17.4 94 290-385 185-309 (511)
35 PLN02626 malate synthase 98.5 1.9E-06 4.2E-11 90.8 14.2 93 291-385 213-336 (551)
36 PF02896 PEP-utilizers_C: PEP- 97.9 3.2E-05 6.9E-10 76.6 8.8 202 107-378 17-252 (293)
37 PRK11061 fused phosphoenolpyru 97.1 0.00074 1.6E-08 74.8 5.9 91 288-378 549-666 (748)
38 TIGR02751 PEPCase_arch phospho 96.8 0.0033 7.1E-08 66.5 8.0 94 289-382 122-250 (506)
39 COG1080 PtsA Phosphoenolpyruva 96.6 0.007 1.5E-07 64.7 8.7 101 278-378 374-501 (574)
40 TIGR01828 pyru_phos_dikin pyru 96.6 0.01 2.2E-07 66.8 9.7 108 272-379 670-825 (856)
41 PRK13655 phosphoenolpyruvate c 96.5 0.009 2E-07 63.1 8.2 95 288-382 120-242 (494)
42 PTZ00398 phosphoenolpyruvate c 96.1 0.023 4.9E-07 64.8 9.2 104 279-382 532-664 (974)
43 PRK00009 phosphoenolpyruvate c 96.1 0.021 4.6E-07 64.6 8.9 94 289-382 486-607 (911)
44 PRK09279 pyruvate phosphate di 95.9 0.019 4E-07 64.8 7.3 110 270-379 674-831 (879)
45 COG2352 Ppc Phosphoenolpyruvat 94.2 0.09 1.9E-06 58.5 6.3 120 256-377 447-599 (910)
46 PF00311 PEPcase: Phosphoenolp 93.2 0.17 3.8E-06 56.7 6.5 86 292-377 366-479 (794)
47 PF14010 PEPcase_2: Phosphoeno 92.3 0.19 4.1E-06 53.3 4.9 95 289-383 120-249 (491)
48 COG3605 PtsP Signal transducti 91.2 0.53 1.2E-05 50.9 6.9 87 291-377 560-673 (756)
49 cd00958 DhnA Class I fructose- 89.1 1.1 2.5E-05 42.2 6.7 75 274-353 140-221 (235)
50 TIGR01949 AroFGH_arch predicte 88.5 13 0.00028 35.9 13.7 66 282-352 162-233 (258)
51 PRK00694 4-hydroxy-3-methylbut 85.2 5.7 0.00012 43.1 9.8 95 279-377 48-161 (606)
52 PF00478 IMPDH: IMP dehydrogen 84.8 2 4.2E-05 44.1 6.0 52 108-159 95-146 (352)
53 PRK02048 4-hydroxy-3-methylbut 84.6 5.1 0.00011 43.7 9.3 95 279-377 44-157 (611)
54 PF04551 GcpE: GcpE protein; 84.6 3.5 7.7E-05 42.2 7.6 95 279-377 34-134 (359)
55 PRK08649 inosine 5-monophospha 83.1 3.1 6.7E-05 42.8 6.6 68 278-349 143-218 (368)
56 cd00381 IMPDH IMPDH: The catal 82.4 14 0.00031 37.1 11.0 98 276-377 93-200 (325)
57 PRK07428 nicotinate-nucleotide 80.6 8.7 0.00019 38.3 8.6 68 275-347 202-272 (288)
58 PLN02925 4-hydroxy-3-methylbut 80.1 15 0.00032 40.9 10.8 119 255-377 89-226 (733)
59 PRK05096 guanosine 5'-monophos 78.7 4.1 8.8E-05 41.6 5.6 50 110-159 97-148 (346)
60 cd00381 IMPDH IMPDH: The catal 78.2 4.3 9.4E-05 40.8 5.7 49 111-159 84-132 (325)
61 TIGR01305 GMP_reduct_1 guanosi 78.2 4.4 9.6E-05 41.3 5.8 49 110-158 96-146 (343)
62 PF00677 Lum_binding: Lumazine 77.4 9.5 0.00021 30.9 6.5 57 206-264 18-82 (85)
63 COG0574 PpsA Phosphoenolpyruva 77.0 5.4 0.00012 44.6 6.6 86 292-378 597-697 (740)
64 TIGR01302 IMP_dehydrog inosine 76.6 4.6 0.0001 42.4 5.6 48 111-158 214-261 (450)
65 PF01274 Malate_synthase: Mala 75.7 10 0.00022 40.9 7.9 87 289-377 203-322 (526)
66 PRK08385 nicotinate-nucleotide 75.6 13 0.00029 36.8 8.2 65 278-347 191-260 (278)
67 cd00945 Aldolase_Class_I Class 75.4 15 0.00033 32.6 8.0 91 279-377 16-116 (201)
68 PRK13125 trpA tryptophan synth 75.4 14 0.00031 35.3 8.3 63 281-345 93-157 (244)
69 PF03437 BtpA: BtpA family; I 73.6 13 0.00029 36.4 7.5 71 286-363 169-249 (254)
70 PRK05458 guanosine 5'-monophos 72.2 6.5 0.00014 39.9 5.2 44 115-158 91-136 (326)
71 PLN02274 inosine-5'-monophosph 71.3 7.3 0.00016 41.7 5.6 50 109-158 236-285 (505)
72 PRK05892 nucleoside diphosphat 71.1 16 0.00034 33.2 7.0 130 70-242 6-155 (158)
73 PRK06843 inosine 5-monophospha 70.9 6.7 0.00015 40.9 5.1 50 109-158 141-190 (404)
74 TIGR00612 ispG_gcpE 1-hydroxy- 69.9 66 0.0014 33.0 11.7 86 281-377 39-124 (346)
75 PTZ00314 inosine-5'-monophosph 69.8 6.2 0.00013 42.1 4.7 45 114-158 234-278 (495)
76 PRK00286 xseA exodeoxyribonucl 69.1 1.5E+02 0.0032 30.8 15.1 192 151-382 10-230 (438)
77 PTZ00314 inosine-5'-monophosph 69.1 43 0.00093 35.8 10.8 98 275-377 239-347 (495)
78 TIGR01306 GMP_reduct_2 guanosi 68.3 10 0.00022 38.5 5.6 48 111-158 84-133 (321)
79 PRK05848 nicotinate-nucleotide 67.8 27 0.00058 34.6 8.3 67 278-347 191-258 (273)
80 cd01573 modD_like ModD; Quinol 67.5 28 0.00061 34.2 8.4 67 276-347 190-259 (272)
81 TIGR02708 L_lactate_ox L-lacta 67.1 19 0.00041 37.1 7.4 94 279-376 239-348 (367)
82 PF01729 QRPTase_C: Quinolinat 66.3 15 0.00033 33.6 5.9 64 279-347 90-156 (169)
83 PRK10737 FKBP-type peptidyl-pr 66.0 20 0.00044 33.8 6.8 59 189-247 51-118 (196)
84 cd00408 DHDPS-like Dihydrodipi 65.6 45 0.00098 32.2 9.4 101 279-383 21-132 (281)
85 PRK05742 nicotinate-nucleotide 65.1 27 0.00058 34.6 7.7 65 275-347 195-262 (277)
86 cd04724 Tryptophan_synthase_al 64.9 30 0.00066 33.2 7.9 103 270-383 9-138 (242)
87 TIGR00674 dapA dihydrodipicoli 64.3 44 0.00095 32.6 9.1 99 279-381 22-131 (285)
88 TIGR00739 yajC preprotein tran 64.2 12 0.00026 30.5 4.2 42 215-257 32-73 (84)
89 COG0826 Collagenase and relate 64.0 31 0.00067 35.3 8.2 72 276-351 13-102 (347)
90 TIGR01304 IMP_DH_rel_2 IMP deh 62.9 21 0.00045 36.9 6.7 68 278-349 144-219 (369)
91 cd00954 NAL N-Acetylneuraminic 62.4 48 0.001 32.4 9.0 99 279-381 24-135 (288)
92 PRK07695 transcriptional regul 62.3 24 0.00051 32.5 6.5 36 123-158 17-52 (201)
93 PRK15452 putative protease; Pr 61.8 27 0.00059 36.8 7.5 70 277-346 11-96 (443)
94 PF04476 DUF556: Protein of un 61.7 68 0.0015 31.2 9.6 98 285-383 76-188 (235)
95 PF01136 Peptidase_U32: Peptid 61.6 16 0.00035 34.2 5.4 41 121-161 157-197 (233)
96 cd01568 QPRTase_NadC Quinolina 61.5 35 0.00075 33.5 7.8 67 274-346 186-255 (269)
97 PLN02741 riboflavin synthase 61.4 29 0.00063 32.7 6.9 55 208-264 23-84 (194)
98 cd04737 LOX_like_FMN L-Lactate 60.9 38 0.00082 34.7 8.2 94 279-376 232-341 (351)
99 TIGR00187 ribE riboflavin synt 60.3 33 0.00071 32.5 7.1 56 208-265 22-85 (200)
100 PRK07315 fructose-bisphosphate 60.3 1.1E+02 0.0024 30.5 11.1 51 111-163 79-129 (293)
101 TIGR02320 PEP_mutase phosphoen 59.9 42 0.0009 33.4 8.1 12 315-326 150-161 (285)
102 PRK03620 5-dehydro-4-deoxygluc 59.5 54 0.0012 32.4 8.9 98 279-380 31-138 (303)
103 PRK00278 trpC indole-3-glycero 59.0 29 0.00063 33.8 6.7 74 277-353 168-247 (260)
104 TIGR01305 GMP_reduct_1 guanosi 58.9 64 0.0014 33.1 9.3 106 274-383 104-220 (343)
105 PRK04147 N-acetylneuraminate l 58.8 94 0.002 30.5 10.4 101 279-383 27-139 (293)
106 cd00950 DHDPS Dihydrodipicolin 58.6 64 0.0014 31.3 9.1 99 279-381 24-133 (284)
107 cd00564 TMP_TenI Thiamine mono 58.3 31 0.00067 30.6 6.4 39 123-161 15-53 (196)
108 PLN02417 dihydrodipicolinate s 58.1 59 0.0013 31.8 8.8 89 279-368 25-124 (280)
109 KOG2550 IMP dehydrogenase/GMP 58.0 17 0.00037 38.2 5.0 46 114-159 244-289 (503)
110 PLN02274 inosine-5'-monophosph 57.4 87 0.0019 33.6 10.5 99 275-377 246-354 (505)
111 TIGR01303 IMP_DH_rel_1 IMP deh 56.3 17 0.00038 38.6 5.0 59 110-173 214-272 (475)
112 PRK07807 inosine 5-monophospha 56.2 78 0.0017 33.8 9.9 102 273-377 223-333 (479)
113 COG1892 Phosphoenolpyruvate ca 56.0 24 0.00052 37.4 5.8 96 288-383 123-251 (488)
114 TIGR00736 nifR3_rel_arch TIM-b 55.9 46 0.00099 32.1 7.4 73 280-356 152-230 (231)
115 cd02911 arch_FMN Archeal FMN-b 55.6 36 0.00077 32.6 6.6 63 279-348 155-222 (233)
116 PF00899 ThiF: ThiF family; I 55.5 57 0.0012 27.8 7.3 68 303-383 57-124 (135)
117 PRK09722 allulose-6-phosphate 55.5 54 0.0012 31.6 7.8 72 279-356 72-143 (229)
118 PRK05581 ribulose-phosphate 3- 54.0 69 0.0015 29.5 8.1 88 279-381 19-116 (220)
119 PRK05567 inosine 5'-monophosph 53.9 30 0.00066 36.7 6.3 50 109-158 216-265 (486)
120 PRK07896 nicotinate-nucleotide 53.8 67 0.0014 32.1 8.3 65 278-347 208-275 (289)
121 TIGR00742 yjbN tRNA dihydrouri 53.7 39 0.00085 34.0 6.8 67 280-351 145-228 (318)
122 cd05565 PTS_IIB_lactose PTS_II 53.5 64 0.0014 27.1 7.0 69 299-382 12-80 (99)
123 PTZ00170 D-ribulose-5-phosphat 52.8 31 0.00068 32.8 5.7 78 274-357 73-152 (228)
124 cd00377 ICL_PEPM Members of th 52.8 90 0.0019 30.0 8.9 87 279-377 87-199 (243)
125 TIGR00683 nanA N-acetylneurami 52.5 57 0.0012 32.1 7.7 71 279-349 24-106 (290)
126 PF07521 RMMBL: RNA-metabolisi 52.3 11 0.00025 26.6 2.0 23 134-156 7-30 (43)
127 PF00834 Ribul_P_3_epim: Ribul 52.2 20 0.00043 33.7 4.2 69 281-356 72-140 (201)
128 PRK00366 ispG 4-hydroxy-3-meth 52.2 2.3E+02 0.005 29.4 12.0 87 279-377 45-133 (360)
129 cd02809 alpha_hydroxyacid_oxid 52.1 55 0.0012 32.3 7.5 93 279-375 183-291 (299)
130 PF00478 IMPDH: IMP dehydrogen 52.1 87 0.0019 32.2 9.0 99 275-377 106-214 (352)
131 cd00423 Pterin_binding Pterin 51.9 52 0.0011 31.8 7.2 55 123-180 27-89 (258)
132 smart00729 Elp3 Elongator prot 51.4 1.4E+02 0.0029 26.1 9.3 44 118-161 95-147 (216)
133 PF04055 Radical_SAM: Radical 51.4 1.1E+02 0.0024 25.4 8.5 54 108-161 75-138 (166)
134 PRK09289 riboflavin synthase s 51.4 72 0.0016 29.9 7.8 56 208-265 22-84 (194)
135 PRK07226 fructose-bisphosphate 51.1 1.3E+02 0.0029 29.1 9.9 95 272-377 34-142 (267)
136 PF01207 Dus: Dihydrouridine s 50.9 18 0.0004 36.0 3.9 70 278-352 140-219 (309)
137 cd02801 DUS_like_FMN Dihydrour 50.7 51 0.0011 30.5 6.7 70 279-351 141-218 (231)
138 TIGR01334 modD putative molybd 50.5 50 0.0011 32.8 6.9 64 278-346 197-263 (277)
139 PRK01130 N-acetylmannosamine-6 50.4 49 0.0011 30.9 6.5 65 279-348 129-204 (221)
140 TIGR01345 malate_syn_G malate 50.3 38 0.00082 37.7 6.4 96 288-385 385-512 (721)
141 PRK03170 dihydrodipicolinate s 50.3 93 0.002 30.3 8.8 99 279-381 25-134 (292)
142 TIGR01302 IMP_dehydrog inosine 50.0 1.7E+02 0.0036 30.8 11.1 100 274-377 221-330 (450)
143 PRK07535 methyltetrahydrofolat 49.9 33 0.00072 33.5 5.5 58 123-183 28-85 (261)
144 PRK11815 tRNA-dihydrouridine s 49.7 55 0.0012 33.0 7.2 67 280-351 155-238 (333)
145 PRK08072 nicotinate-nucleotide 48.9 58 0.0013 32.3 7.0 68 274-347 193-261 (277)
146 TIGR00853 pts-lac PTS system, 48.6 84 0.0018 25.9 6.9 66 303-383 19-84 (95)
147 PRK05585 yajC preprotein trans 48.6 28 0.00061 29.6 4.2 41 216-257 48-88 (106)
148 PRK06559 nicotinate-nucleotide 48.4 63 0.0014 32.3 7.2 63 277-347 205-270 (290)
149 PRK05886 yajC preprotein trans 48.3 29 0.00063 29.9 4.2 42 216-258 34-75 (109)
150 PRK15447 putative protease; Pr 48.1 70 0.0015 31.7 7.6 69 277-345 15-94 (301)
151 COG2225 AceB Malate synthase [ 48.0 1.2E+02 0.0026 33.0 9.5 209 106-377 93-335 (545)
152 PLN02535 glycolate oxidase 47.6 56 0.0012 33.7 6.9 94 279-376 234-343 (364)
153 TIGR01163 rpe ribulose-phospha 47.6 1.9E+02 0.0042 26.1 9.9 90 279-380 14-110 (210)
154 cd00951 KDGDH 5-dehydro-4-deox 47.3 2.2E+02 0.0048 27.8 10.9 95 280-380 25-131 (289)
155 PRK07107 inosine 5-monophospha 47.3 31 0.00067 37.0 5.2 50 108-158 230-279 (502)
156 KOG0538 Glycolate oxidase [Ene 47.2 66 0.0014 32.8 7.1 65 281-349 236-310 (363)
157 COG4043 Preprotein translocase 47.2 27 0.00058 29.8 3.7 25 218-242 31-55 (111)
158 TIGR00078 nadC nicotinate-nucl 47.1 40 0.00087 33.1 5.6 66 274-345 183-249 (265)
159 cd01572 QPRTase Quinolinate ph 47.1 64 0.0014 31.7 7.0 66 274-347 187-255 (268)
160 PRK13210 putative L-xylulose 5 46.7 1.5E+02 0.0033 28.1 9.5 99 280-378 20-150 (284)
161 TIGR00693 thiE thiamine-phosph 46.2 55 0.0012 29.7 6.0 70 274-348 101-182 (196)
162 cd02922 FCB2_FMN Flavocytochro 45.9 1.1E+02 0.0024 31.1 8.8 94 279-376 224-336 (344)
163 cd04730 NPD_like 2-Nitropropan 45.9 2E+02 0.0043 26.7 9.9 60 277-345 68-128 (236)
164 cd00952 CHBPH_aldolase Trans-o 45.8 2.5E+02 0.0055 27.8 11.1 100 279-382 32-143 (309)
165 PRK13209 L-xylulose 5-phosphat 45.6 2.1E+02 0.0046 27.2 10.3 99 280-378 25-155 (283)
166 TIGR01093 aroD 3-dehydroquinat 45.6 74 0.0016 30.1 7.0 73 107-180 116-195 (228)
167 TIGR03151 enACPred_II putative 45.4 1.9E+02 0.0042 28.8 10.2 59 278-345 76-135 (307)
168 PRK02227 hypothetical protein; 45.1 1.7E+02 0.0036 28.7 9.3 99 284-383 75-188 (238)
169 PRK06096 molybdenum transport 44.8 63 0.0014 32.2 6.6 64 278-346 198-264 (284)
170 cd05845 Ig2_L1-CAM_like Second 44.8 1.3E+02 0.0028 25.0 7.4 67 186-254 11-82 (95)
171 KOG2335 tRNA-dihydrouridine sy 44.8 70 0.0015 33.0 7.0 89 279-374 158-267 (358)
172 COG1862 YajC Preprotein transl 44.7 33 0.00072 28.9 4.0 42 215-257 38-79 (97)
173 cd00958 DhnA Class I fructose- 44.6 1.4E+02 0.0031 27.9 8.8 95 272-377 16-125 (235)
174 cd04729 NanE N-acetylmannosami 44.4 68 0.0015 29.9 6.5 64 280-348 134-208 (219)
175 PRK10550 tRNA-dihydrouridine s 44.4 56 0.0012 32.7 6.3 64 280-352 152-230 (312)
176 PF00701 DHDPS: Dihydrodipicol 44.3 2.5E+02 0.0054 27.2 10.7 99 279-381 25-134 (289)
177 PRK07807 inosine 5-monophospha 44.2 34 0.00074 36.5 4.9 44 115-158 221-264 (479)
178 COG0157 NadC Nicotinate-nucleo 44.2 99 0.0021 30.9 7.7 65 277-347 196-263 (280)
179 TIGR00237 xseA exodeoxyribonuc 43.8 3E+02 0.0065 28.9 11.8 67 167-244 19-95 (432)
180 cd00429 RPE Ribulose-5-phospha 43.7 2.4E+02 0.0053 25.4 10.0 85 280-379 16-110 (211)
181 COG0821 gcpE 1-hydroxy-2-methy 43.5 96 0.0021 31.9 7.6 82 282-377 42-126 (361)
182 cd04726 KGPDC_HPS 3-Keto-L-gul 43.5 2.5E+02 0.0054 25.3 10.6 65 281-348 69-135 (202)
183 PRK02412 aroD 3-dehydroquinate 43.3 78 0.0017 30.6 6.9 74 107-180 133-213 (253)
184 TIGR02356 adenyl_thiF thiazole 43.2 1E+02 0.0022 28.6 7.4 67 303-382 76-142 (202)
185 PRK02999 malate synthase G; Pr 43.1 54 0.0012 36.5 6.2 95 289-385 389-515 (726)
186 cd00377 ICL_PEPM Members of th 43.0 3.1E+02 0.0067 26.3 10.9 58 276-339 160-218 (243)
187 COG0036 Rpe Pentose-5-phosphat 43.0 91 0.002 30.1 7.1 70 280-356 75-144 (220)
188 PRK06015 keto-hydroxyglutarate 42.5 48 0.0011 31.3 5.1 89 294-385 8-106 (201)
189 PRK08745 ribulose-phosphate 3- 42.4 1E+02 0.0023 29.4 7.5 70 280-356 76-145 (223)
190 TIGR03249 KdgD 5-dehydro-4-deo 42.2 1.7E+02 0.0036 28.8 9.2 93 279-377 29-133 (296)
191 TIGR01461 greB transcription e 42.1 1.3E+02 0.0028 27.2 7.7 129 70-242 3-153 (156)
192 TIGR01304 IMP_DH_rel_2 IMP deh 41.8 47 0.001 34.3 5.4 69 277-349 197-287 (369)
193 PRK11197 lldD L-lactate dehydr 41.5 75 0.0016 33.0 6.8 95 278-376 255-365 (381)
194 PRK06543 nicotinate-nucleotide 41.2 59 0.0013 32.4 5.8 63 277-347 201-266 (281)
195 cd03316 MR_like Mandelate race 40.9 1.8E+02 0.0039 29.0 9.3 65 108-176 125-198 (357)
196 COG1440 CelA Phosphotransferas 40.7 1.3E+02 0.0028 25.7 6.9 65 303-382 17-81 (102)
197 cd00331 IGPS Indole-3-glycerol 40.5 98 0.0021 28.7 6.9 71 277-348 129-203 (217)
198 PF01487 DHquinase_I: Type I 3 40.3 1.4E+02 0.0031 27.8 8.1 75 107-181 111-191 (224)
199 PRK05096 guanosine 5'-monophos 40.3 2.2E+02 0.0048 29.4 9.7 101 274-377 105-216 (346)
200 cd03332 LMO_FMN L-Lactate 2-mo 40.3 1E+02 0.0023 32.0 7.6 92 278-376 263-373 (383)
201 PRK01885 greB transcription el 40.2 1.9E+02 0.004 26.2 8.4 129 70-242 5-155 (157)
202 TIGR02313 HpaI-NOT-DapA 2,4-di 40.2 3.6E+02 0.0079 26.5 11.2 100 279-382 24-135 (294)
203 PLN02493 probable peroxisomal 40.0 1.5E+02 0.0033 30.7 8.7 94 278-375 234-343 (367)
204 CHL00200 trpA tryptophan synth 39.2 3.5E+02 0.0075 26.5 10.7 63 280-345 110-172 (263)
205 PRK01130 N-acetylmannosamine-6 38.9 2.1E+02 0.0045 26.6 8.9 69 278-350 77-150 (221)
206 COG0042 tRNA-dihydrouridine sy 38.7 93 0.002 31.4 6.8 71 281-354 157-236 (323)
207 PRK09289 riboflavin synthase s 38.6 1.4E+02 0.0029 28.1 7.5 56 207-264 117-180 (194)
208 TIGR01163 rpe ribulose-phospha 38.5 1.7E+02 0.0036 26.5 8.1 66 280-348 70-135 (210)
209 PLN02979 glycolate oxidase 38.4 1.8E+02 0.0038 30.2 8.8 95 278-376 233-343 (366)
210 PRK06978 nicotinate-nucleotide 38.3 1.1E+02 0.0024 30.8 7.1 62 278-347 214-278 (294)
211 PF10566 Glyco_hydro_97: Glyco 38.2 1.4E+02 0.0031 29.6 7.9 104 270-377 26-153 (273)
212 PRK08005 epimerase; Validated 38.1 1.4E+02 0.003 28.5 7.5 71 279-356 71-141 (210)
213 PF13473 Cupredoxin_1: Cupredo 38.0 52 0.0011 27.0 4.1 42 185-226 34-75 (104)
214 cd01492 Aos1_SUMO Ubiquitin ac 38.0 1.6E+02 0.0034 27.3 7.8 62 304-377 77-138 (197)
215 PRK00043 thiE thiamine-phospha 37.9 1E+02 0.0022 28.1 6.5 39 123-161 24-62 (212)
216 PRK09016 quinolinate phosphori 37.8 1.1E+02 0.0024 30.8 7.1 62 278-347 217-281 (296)
217 cd00537 MTHFR Methylenetetrahy 37.8 83 0.0018 30.4 6.2 69 276-345 147-215 (274)
218 KOG3974 Predicted sugar kinase 37.7 1E+02 0.0023 30.8 6.7 93 284-386 52-145 (306)
219 PF02599 CsrA: Global regulato 37.7 74 0.0016 24.0 4.5 29 222-251 7-35 (54)
220 PRK09140 2-dehydro-3-deoxy-6-p 37.5 2.8E+02 0.006 26.0 9.5 67 279-351 114-184 (206)
221 PRK13020 riboflavin synthase s 37.5 88 0.0019 29.7 6.1 54 209-264 23-84 (206)
222 cd02067 B12-binding B12 bindin 37.3 1.1E+02 0.0024 25.4 6.1 42 280-321 41-85 (119)
223 PRK14720 transcript cleavage f 37.3 97 0.0021 35.8 7.3 136 64-243 744-902 (906)
224 cd00953 KDG_aldolase KDG (2-ke 37.0 2.7E+02 0.0058 27.2 9.6 94 280-381 24-128 (279)
225 PRK05718 keto-hydroxyglutarate 37.0 1.1E+02 0.0024 29.0 6.7 92 291-385 16-117 (212)
226 TIGR01496 DHPS dihydropteroate 36.9 71 0.0015 31.1 5.5 55 123-180 26-88 (257)
227 PF02219 MTHFR: Methylenetetra 36.8 68 0.0015 31.4 5.4 68 277-345 160-227 (287)
228 TIGR00875 fsa_talC_mipB fructo 36.6 1.3E+02 0.0029 28.5 7.2 59 282-346 115-185 (213)
229 PRK13308 ureC urease subunit a 36.6 6.2E+02 0.013 27.9 13.7 87 283-377 149-244 (569)
230 PRK13813 orotidine 5'-phosphat 36.6 1.2E+02 0.0026 28.1 6.8 50 283-332 74-123 (215)
231 PF00150 Cellulase: Cellulase 36.6 83 0.0018 29.4 5.8 53 121-177 22-85 (281)
232 PRK05581 ribulose-phosphate 3- 36.6 2.9E+02 0.0063 25.2 9.4 72 274-348 69-140 (220)
233 cd02072 Glm_B12_BD B12 binding 36.5 1.1E+02 0.0025 26.8 6.2 42 280-321 41-85 (128)
234 PRK13307 bifunctional formalde 36.1 1.5E+02 0.0032 31.0 7.9 65 282-347 243-307 (391)
235 PRK08195 4-hyroxy-2-oxovalerat 35.5 1.1E+02 0.0024 30.9 6.9 51 108-158 76-126 (337)
236 cd00728 malate_synt_G Malate s 35.5 1.1E+02 0.0025 34.1 7.2 96 288-385 380-507 (712)
237 PF11965 DUF3479: Domain of un 35.4 86 0.0019 28.9 5.4 47 280-327 49-95 (164)
238 TIGR03128 RuMP_HxlA 3-hexulose 35.3 2.3E+02 0.0051 25.7 8.5 66 281-348 68-135 (206)
239 PF07679 I-set: Immunoglobulin 35.2 1.8E+02 0.0039 22.1 6.7 67 186-253 8-78 (90)
240 PRK06843 inosine 5-monophospha 35.2 2.9E+02 0.0063 29.0 9.9 70 275-347 151-223 (404)
241 cd01485 E1-1_like Ubiquitin ac 35.1 1.9E+02 0.0041 26.8 7.9 63 305-377 78-141 (198)
242 cd04731 HisF The cyclase subun 35.0 1.1E+02 0.0024 28.8 6.4 76 279-359 152-236 (243)
243 PF04028 DUF374: Domain of unk 34.9 2.3E+02 0.005 22.5 7.3 50 120-175 19-69 (74)
244 COG0646 MetH Methionine syntha 34.8 2.1E+02 0.0045 29.0 8.4 62 108-171 113-192 (311)
245 cd00757 ThiF_MoeB_HesA_family 34.8 1.5E+02 0.0033 27.9 7.3 67 303-382 76-142 (228)
246 PRK02261 methylaspartate mutas 34.6 1.3E+02 0.0028 26.5 6.3 48 281-328 46-98 (137)
247 PF00809 Pterin_bind: Pterin b 34.5 1E+02 0.0022 28.9 5.9 55 124-180 23-85 (210)
248 COG1954 GlpP Glycerol-3-phosph 34.5 1.6E+02 0.0035 27.6 7.0 88 277-385 11-104 (181)
249 PRK08091 ribulose-phosphate 3- 34.5 1.7E+02 0.0037 28.2 7.6 64 279-345 81-146 (228)
250 TIGR03425 urea_degr_2 urea car 34.4 1.1E+02 0.0024 29.6 6.3 54 187-240 14-81 (233)
251 COG0307 RibC Riboflavin syntha 34.3 1.2E+02 0.0026 29.0 6.3 51 213-265 25-82 (204)
252 PF03328 HpcH_HpaI: HpcH/HpaI 34.2 2.2E+02 0.0047 26.5 8.2 67 278-345 10-90 (221)
253 cd02071 MM_CoA_mut_B12_BD meth 34.2 1.1E+02 0.0025 25.8 5.8 44 280-323 41-87 (122)
254 PRK14024 phosphoribosyl isomer 34.2 67 0.0015 30.7 4.8 73 281-359 151-235 (241)
255 cd00452 KDPG_aldolase KDPG and 34.0 1.6E+02 0.0034 26.9 7.1 65 278-348 106-173 (190)
256 cd00429 RPE Ribulose-5-phospha 34.0 2.1E+02 0.0046 25.8 7.9 67 280-349 71-137 (211)
257 TIGR00262 trpA tryptophan synt 34.0 1.5E+02 0.0033 28.8 7.3 62 280-344 106-167 (256)
258 PRK15452 putative protease; Pr 33.9 69 0.0015 33.8 5.2 41 121-161 269-309 (443)
259 TIGR01037 pyrD_sub1_fam dihydr 33.9 1.5E+02 0.0033 28.9 7.4 53 317-375 234-289 (300)
260 cd02069 methionine_synthase_B1 33.9 1.1E+02 0.0024 28.9 6.2 41 281-321 131-173 (213)
261 TIGR03424 urea_degr_1 urea car 33.7 1.3E+02 0.0029 28.4 6.6 54 187-240 15-82 (198)
262 PRK08883 ribulose-phosphate 3- 33.4 1.6E+02 0.0035 28.0 7.2 69 274-345 66-134 (220)
263 TIGR02355 moeB molybdopterin s 33.2 2E+02 0.0043 27.6 7.9 66 304-382 80-145 (240)
264 PF02699 YajC: Preprotein tran 33.2 16 0.00036 29.5 0.4 42 215-257 31-72 (82)
265 PLN02495 oxidoreductase, actin 33.2 1.1E+02 0.0024 31.8 6.5 34 109-142 113-149 (385)
266 PF11213 DUF3006: Protein of u 33.2 85 0.0018 24.5 4.4 41 193-236 9-50 (71)
267 TIGR00259 thylakoid_BtpA membr 33.1 1.8E+02 0.0039 28.6 7.6 72 274-348 154-229 (257)
268 PRK01712 carbon storage regula 33.1 1.1E+02 0.0024 23.9 4.9 28 221-249 6-33 (64)
269 cd03174 DRE_TIM_metallolyase D 33.0 4.1E+02 0.009 24.8 10.2 103 273-377 15-131 (265)
270 TIGR00737 nifR3_yhdG putative 33.0 1.4E+02 0.0031 29.6 7.1 67 280-351 151-227 (319)
271 TIGR02320 PEP_mutase phosphoen 32.9 1.8E+02 0.0039 28.9 7.7 63 276-339 169-232 (285)
272 PRK06342 transcription elongat 32.9 1.6E+02 0.0035 26.8 6.8 124 66-241 25-159 (160)
273 cd02070 corrinoid_protein_B12- 32.6 1.2E+02 0.0026 28.0 6.1 41 281-321 125-169 (201)
274 PF09370 TIM-br_sig_trns: TIM- 32.4 1.3E+02 0.0028 29.9 6.5 51 113-164 151-212 (268)
275 PRK00568 carbon storage regula 32.4 72 0.0016 25.8 3.9 26 222-248 7-32 (76)
276 TIGR01949 AroFGH_arch predicte 32.3 3.6E+02 0.0079 25.8 9.6 97 272-377 31-139 (258)
277 cd02803 OYE_like_FMN_family Ol 32.0 2E+02 0.0044 28.3 8.0 75 274-351 225-316 (327)
278 PRK06106 nicotinate-nucleotide 31.9 96 0.0021 30.9 5.6 62 278-347 203-267 (281)
279 PRK07107 inosine 5-monophospha 31.8 1.3E+02 0.0028 32.4 6.9 69 278-348 243-314 (502)
280 PRK05458 guanosine 5'-monophos 31.7 2E+02 0.0043 29.3 7.9 71 274-346 94-168 (326)
281 cd05737 Ig_Myomesin_like_C C-t 31.7 2.3E+02 0.005 22.2 6.9 69 182-253 5-80 (92)
282 PRK05690 molybdopterin biosynt 31.1 2.1E+02 0.0044 27.5 7.6 66 304-382 88-153 (245)
283 PF01336 tRNA_anti-codon: OB-f 30.7 91 0.002 23.1 4.2 39 192-230 14-54 (75)
284 TIGR03128 RuMP_HxlA 3-hexulose 30.6 1.6E+02 0.0035 26.8 6.6 64 279-348 116-188 (206)
285 cd07943 DRE_TIM_HOA 4-hydroxy- 30.5 1.5E+02 0.0033 28.5 6.7 48 108-155 73-120 (263)
286 cd00405 PRAI Phosphoribosylant 30.4 1.9E+02 0.0042 26.5 7.1 71 278-349 8-83 (203)
287 TIGR01501 MthylAspMutase methy 30.4 1.6E+02 0.0035 26.1 6.2 37 280-316 43-81 (134)
288 PF01070 FMN_dh: FMN-dependent 30.4 2E+02 0.0044 29.4 7.8 92 278-376 235-345 (356)
289 cd02811 IDI-2_FMN Isopentenyl- 30.1 1.3E+02 0.0029 30.1 6.4 90 279-376 192-319 (326)
290 cd02940 DHPD_FMN Dihydropyrimi 30.1 1.6E+02 0.0035 29.0 6.9 66 279-348 183-283 (299)
291 PF01261 AP_endonuc_2: Xylose 30.0 80 0.0017 27.9 4.4 96 282-377 1-128 (213)
292 TIGR01182 eda Entner-Doudoroff 30.0 78 0.0017 30.0 4.4 22 362-385 89-110 (204)
293 TIGR03217 4OH_2_O_val_ald 4-hy 29.9 1.6E+02 0.0035 29.8 7.0 50 108-157 75-124 (333)
294 TIGR00735 hisF imidazoleglycer 29.8 2.6E+02 0.0056 26.8 8.1 87 279-377 158-253 (254)
295 PRK09250 fructose-bisphosphate 29.8 4.4E+02 0.0096 27.2 10.0 90 277-377 91-195 (348)
296 PRK09856 fructoselysine 3-epim 29.7 3.6E+02 0.0077 25.5 9.0 100 279-378 16-146 (275)
297 PLN02826 dihydroorotate dehydr 29.7 2.5E+02 0.0054 29.4 8.4 101 272-376 271-398 (409)
298 PRK13957 indole-3-glycerol-pho 29.4 2E+02 0.0044 28.1 7.2 70 277-353 159-237 (247)
299 COG0329 DapA Dihydrodipicolina 29.2 2.1E+02 0.0046 28.4 7.5 69 279-347 28-107 (299)
300 TIGR03096 nitroso_cyanin nitro 29.1 1.3E+02 0.0027 26.9 5.3 16 186-201 61-76 (135)
301 cd04733 OYE_like_2_FMN Old yel 28.9 1.8E+02 0.0038 29.2 7.0 72 274-351 233-327 (338)
302 TIGR00676 fadh2 5,10-methylene 28.6 1.8E+02 0.0038 28.4 6.8 62 277-338 145-206 (272)
303 cd00956 Transaldolase_FSA Tran 28.6 2.2E+02 0.0048 26.8 7.2 63 278-346 111-185 (211)
304 PRK07226 fructose-bisphosphate 28.6 1.9E+02 0.0041 28.0 7.0 68 282-352 166-237 (267)
305 PRK09590 celB cellobiose phosp 28.5 2.8E+02 0.006 23.4 7.1 67 302-383 16-84 (104)
306 PRK10415 tRNA-dihydrouridine s 28.5 1.3E+02 0.0028 30.2 5.9 67 281-352 154-230 (321)
307 PRK15108 biotin synthase; Prov 28.5 1.5E+02 0.0033 30.0 6.5 30 110-141 125-154 (345)
308 cd00739 DHPS DHPS subgroup of 28.4 1.1E+02 0.0024 29.8 5.3 55 123-180 27-89 (257)
309 PRK02083 imidazole glycerol ph 28.4 2.3E+02 0.0049 27.0 7.4 87 279-377 156-251 (253)
310 cd00019 AP2Ec AP endonuclease 28.3 2.1E+02 0.0046 27.3 7.3 99 279-378 13-140 (279)
311 PF09347 DUF1989: Domain of un 28.3 1.2E+02 0.0027 27.7 5.3 53 188-240 12-78 (166)
312 cd02932 OYE_YqiM_FMN Old yello 28.2 1.3E+02 0.0029 30.0 6.0 69 280-351 245-325 (336)
313 PF09926 DUF2158: Uncharacteri 28.2 90 0.002 23.4 3.6 35 222-256 2-42 (53)
314 PF09953 DUF2187: Uncharacteri 28.1 1.4E+02 0.003 22.9 4.6 32 220-252 3-34 (57)
315 PLN02389 biotin synthase 28.1 1.4E+02 0.0031 30.7 6.3 50 110-161 167-224 (379)
316 cd02810 DHOD_DHPD_FMN Dihydroo 28.0 2.9E+02 0.0062 26.7 8.1 67 279-346 114-196 (289)
317 TIGR00202 csrA carbon storage 27.7 1.1E+02 0.0024 24.3 4.2 27 221-248 6-32 (69)
318 PF04452 Methyltrans_RNA: RNA 27.7 2.4E+02 0.0051 26.6 7.3 75 220-298 16-95 (225)
319 cd05722 Ig1_Neogenin First imm 27.7 3E+02 0.0065 21.6 7.3 72 187-259 8-89 (95)
320 PRK09427 bifunctional indole-3 27.4 96 0.0021 32.9 5.0 73 277-355 167-247 (454)
321 PRK15095 FKBP-type peptidyl-pr 27.3 2.6E+02 0.0056 25.1 7.1 60 189-248 54-123 (156)
322 cd00502 DHQase_I Type I 3-dehy 27.2 4.1E+02 0.009 24.8 8.9 73 107-180 111-190 (225)
323 PRK06806 fructose-bisphosphate 27.0 2.3E+02 0.005 28.1 7.3 53 110-163 75-127 (281)
324 cd04726 KGPDC_HPS 3-Keto-L-gul 26.9 2.8E+02 0.006 25.0 7.4 64 278-348 115-188 (202)
325 PRK00748 1-(5-phosphoribosyl)- 26.8 1.6E+02 0.0034 27.4 5.9 72 279-359 149-233 (233)
326 PRK08195 4-hyroxy-2-oxovalerat 26.8 3.1E+02 0.0067 27.8 8.3 42 279-320 91-133 (337)
327 cd04730 NPD_like 2-Nitropropan 26.8 2.7E+02 0.0058 25.8 7.5 71 280-353 113-192 (236)
328 PF06953 ArsD: Arsenical resis 26.6 92 0.002 27.3 3.9 24 124-147 31-54 (123)
329 PF02310 B12-binding: B12 bind 26.4 1.9E+02 0.0041 23.6 5.8 70 280-351 42-116 (121)
330 TIGR00677 fadh2_euk methylenet 26.3 2E+02 0.0044 28.3 6.8 68 277-345 149-216 (281)
331 COG1047 SlpA FKBP-type peptidy 26.2 2.1E+02 0.0046 26.7 6.4 59 189-247 52-119 (174)
332 PRK01362 putative translaldola 26.2 4.1E+02 0.0088 25.3 8.5 59 282-346 115-185 (214)
333 COG4464 CapC Capsular polysacc 26.1 40 0.00088 32.7 1.7 40 117-157 15-56 (254)
334 cd05564 PTS_IIB_chitobiose_lic 25.6 3E+02 0.0065 22.5 6.7 66 303-383 15-80 (96)
335 cd05730 Ig3_NCAM-1_like Third 25.6 2.9E+02 0.0064 21.5 6.5 74 177-253 2-80 (95)
336 PF04472 DUF552: Protein of un 25.6 2.5E+02 0.0055 21.7 5.9 44 121-165 10-53 (73)
337 cd02931 ER_like_FMN Enoate red 25.5 2.5E+02 0.0055 28.8 7.6 71 273-351 248-340 (382)
338 PRK05628 coproporphyrinogen II 25.3 2.2E+02 0.0048 28.8 7.1 40 111-150 96-135 (375)
339 TIGR00196 yjeF_cterm yjeF C-te 25.3 2.3E+02 0.0049 27.3 6.9 81 284-382 46-126 (272)
340 TIGR01588 citE citrate lyase, 25.3 3.1E+02 0.0066 27.0 7.8 46 292-338 63-108 (288)
341 PRK06852 aldolase; Validated 25.2 1.6E+02 0.0034 29.7 5.8 70 283-355 195-274 (304)
342 PLN02591 tryptophan synthase 24.9 6.5E+02 0.014 24.5 9.9 91 281-377 98-192 (250)
343 PRK09432 metF 5,10-methylenete 24.8 1.6E+02 0.0035 29.3 5.8 69 276-345 163-231 (296)
344 cd04736 MDH_FMN Mandelate dehy 24.8 2.8E+02 0.006 28.7 7.6 93 278-376 246-354 (361)
345 cd04729 NanE N-acetylmannosami 24.8 1.9E+02 0.0041 26.9 6.0 66 278-346 81-150 (219)
346 cd04740 DHOD_1B_like Dihydroor 24.8 6.4E+02 0.014 24.4 10.5 62 281-345 107-185 (296)
347 cd04738 DHOD_2_like Dihydrooro 24.7 1.3E+02 0.0027 30.2 5.0 73 272-348 211-311 (327)
348 cd04722 TIM_phosphate_binding 24.6 4.5E+02 0.0097 22.5 9.2 66 282-352 77-149 (200)
349 cd01335 Radical_SAM Radical SA 24.6 4.4E+02 0.0095 22.4 9.4 41 111-151 76-116 (204)
350 TIGR00640 acid_CoA_mut_C methy 24.4 2.2E+02 0.0048 24.8 6.0 44 280-323 44-90 (132)
351 PRK14057 epimerase; Provisiona 24.4 2.7E+02 0.0058 27.4 7.1 71 279-356 88-167 (254)
352 cd07945 DRE_TIM_CMS Leptospira 24.4 3.1E+02 0.0067 27.0 7.7 101 274-377 16-131 (280)
353 PF13653 GDPD_2: Glycerophosph 24.4 75 0.0016 21.1 2.3 19 277-295 8-26 (30)
354 cd03129 GAT1_Peptidase_E_like 24.3 3.4E+02 0.0073 25.0 7.6 88 288-377 28-117 (210)
355 PRK08999 hypothetical protein; 24.2 1.9E+02 0.0042 28.2 6.2 71 274-348 231-310 (312)
356 PF13714 PEP_mutase: Phosphoen 24.2 3.9E+02 0.0085 25.8 8.2 50 283-339 162-211 (238)
357 PLN02826 dihydroorotate dehydr 24.1 3.8E+02 0.0083 28.1 8.6 31 316-346 261-296 (409)
358 COG0809 QueA S-adenosylmethion 24.1 3.6E+02 0.0077 27.8 8.0 33 218-251 99-132 (348)
359 PRK02615 thiamine-phosphate py 24.0 1.8E+02 0.0039 29.8 6.1 71 274-348 245-324 (347)
360 PRK08207 coproporphyrinogen II 23.7 3.2E+02 0.0068 29.3 8.1 39 111-149 256-295 (488)
361 PRK11320 prpB 2-methylisocitra 23.5 2.4E+02 0.0052 28.2 6.7 62 279-345 169-233 (292)
362 PF00218 IGPS: Indole-3-glycer 23.4 1.7E+02 0.0036 28.7 5.5 64 277-347 166-239 (254)
363 cd02930 DCR_FMN 2,4-dienoyl-Co 23.3 1.7E+02 0.0036 29.6 5.7 67 280-352 228-312 (353)
364 TIGR00046 RNA methyltransferas 23.2 3.5E+02 0.0076 25.8 7.6 108 220-331 31-154 (240)
365 cd04740 DHOD_1B_like Dihydroor 23.1 5.4E+02 0.012 24.9 9.1 52 317-374 231-285 (296)
366 PLN02540 methylenetetrahydrofo 23.1 1.8E+02 0.0038 32.0 6.0 62 277-338 157-218 (565)
367 PRK01222 N-(5'-phosphoribosyl) 23.0 2.6E+02 0.0056 26.3 6.6 67 278-345 12-83 (210)
368 PRK11858 aksA trans-homoaconit 22.9 5.9E+02 0.013 26.1 9.6 62 278-339 77-153 (378)
369 PRK13111 trpA tryptophan synth 22.9 7.1E+02 0.015 24.3 9.8 43 114-156 18-62 (258)
370 PRK07028 bifunctional hexulose 22.8 5.4E+02 0.012 26.7 9.5 101 274-384 115-222 (430)
371 PRK02290 3-dehydroquinate synt 22.8 2.9E+02 0.0062 28.5 7.1 70 276-349 13-98 (344)
372 TIGR00259 thylakoid_BtpA membr 22.7 3.3E+02 0.0071 26.8 7.4 80 278-360 91-192 (257)
373 cd04501 SGNH_hydrolase_like_4 22.5 1.3E+02 0.0029 26.3 4.3 36 342-377 64-99 (183)
374 PF00290 Trp_syntA: Tryptophan 22.4 7.3E+02 0.016 24.3 9.8 93 281-377 107-201 (259)
375 PRK13958 N-(5'-phosphoribosyl) 22.3 1.7E+02 0.0038 27.4 5.2 65 278-346 10-82 (207)
376 cd00564 TMP_TenI Thiamine mono 22.3 3.3E+02 0.0071 23.9 6.9 64 279-348 105-180 (196)
377 cd01483 E1_enzyme_family Super 22.3 4.2E+02 0.0092 22.5 7.4 68 303-383 54-121 (143)
378 cd07944 DRE_TIM_HOA_like 4-hyd 22.2 2.6E+02 0.0056 27.2 6.6 48 109-156 71-118 (266)
379 PRK11613 folP dihydropteroate 22.2 3.4E+02 0.0075 27.0 7.5 68 109-179 14-102 (282)
380 cd04734 OYE_like_3_FMN Old yel 22.2 3.4E+02 0.0073 27.4 7.6 71 274-352 225-321 (343)
381 PRK00043 thiE thiamine-phospha 21.8 3.3E+02 0.0072 24.6 7.0 64 278-349 113-191 (212)
382 COG0800 Eda 2-keto-3-deoxy-6-p 21.8 5E+02 0.011 24.9 8.2 89 291-385 14-115 (211)
383 PRK06033 hypothetical protein; 21.8 1.8E+02 0.004 23.5 4.5 66 166-241 7-72 (83)
384 cd02933 OYE_like_FMN Old yello 21.8 2.2E+02 0.0048 28.8 6.2 69 274-351 238-319 (338)
385 KOG2550 IMP dehydrogenase/GMP 21.8 4E+02 0.0086 28.5 8.0 100 275-377 249-357 (503)
386 PF02662 FlpD: Methyl-viologen 21.7 2.9E+02 0.0064 23.8 6.1 60 269-328 32-105 (124)
387 PF03575 Peptidase_S51: Peptid 21.7 1.3E+02 0.0029 26.4 4.1 71 304-377 2-72 (154)
388 COG0107 HisF Imidazoleglycerol 21.5 2.1E+02 0.0044 28.2 5.5 61 109-176 72-133 (256)
389 cd01487 E1_ThiF_like E1_ThiF_l 21.5 3.6E+02 0.0077 24.4 7.0 63 304-377 54-117 (174)
390 cd02808 GltS_FMN Glutamate syn 21.4 2.7E+02 0.0059 28.7 6.9 71 278-352 226-320 (392)
391 COG0379 NadA Quinolinate synth 21.3 1.3E+02 0.0028 30.7 4.3 59 253-311 85-143 (324)
392 PRK05597 molybdopterin biosynt 21.1 3.7E+02 0.0079 27.3 7.7 63 304-377 84-146 (355)
393 COG1551 CsrA RNA-binding globa 21.1 1.5E+02 0.0032 23.8 3.7 26 222-248 7-32 (73)
394 TIGR03356 BGL beta-galactosida 21.1 1E+02 0.0023 32.1 3.8 21 123-143 57-77 (427)
395 PRK06005 flgA flagellar basal 21.0 3E+02 0.0066 24.9 6.3 69 175-256 86-155 (160)
396 PRK12475 thiamine/molybdopteri 20.9 4E+02 0.0087 26.9 7.9 63 304-377 82-144 (338)
397 PRK08328 hypothetical protein; 20.8 4.1E+02 0.009 25.1 7.5 64 307-383 87-150 (231)
398 TIGR02319 CPEP_Pphonmut carbox 20.8 3.2E+02 0.007 27.4 7.0 56 279-339 168-225 (294)
399 PRK07688 thiamine/molybdopteri 20.8 3.6E+02 0.0078 27.3 7.5 61 306-377 84-144 (339)
400 PF02581 TMP-TENI: Thiamine mo 20.7 2.8E+02 0.0061 25.0 6.1 68 277-348 103-179 (180)
401 PLN02334 ribulose-phosphate 3- 20.6 3.8E+02 0.0083 25.1 7.2 76 270-347 69-147 (229)
402 cd00945 Aldolase_Class_I Class 20.6 2.4E+02 0.0053 24.7 5.7 53 109-161 48-108 (201)
403 KOG1261 Malate synthase [Energ 20.5 2.4E+02 0.0053 29.7 6.1 209 105-377 96-336 (552)
404 PRK06552 keto-hydroxyglutarate 20.5 3.4E+02 0.0074 25.7 6.8 92 291-385 14-118 (213)
405 PRK14469 ribosomal RNA large s 20.4 4.6E+02 0.0099 26.5 8.1 12 124-135 196-207 (343)
406 PRK13575 3-dehydroquinate dehy 20.4 5.5E+02 0.012 24.7 8.3 74 108-181 124-203 (238)
407 TIGR00542 hxl6Piso_put hexulos 20.2 7.6E+02 0.016 23.5 10.8 99 280-378 20-150 (279)
408 TIGR03217 4OH_2_O_val_ald 4-hy 20.1 5.2E+02 0.011 26.2 8.4 59 279-337 90-149 (333)
No 1
>PLN02623 pyruvate kinase
Probab=100.00 E-value=1.3e-87 Score=700.44 Aligned_cols=378 Identities=78% Similarity=1.111 Sum_probs=344.9
Q ss_pred chhhhhhhccccccccCCCchhhhhhhhcCCCccccccchhhhhccchhhccccccccc--cccCCCCceeeCCCCCccc
Q 016564 2 AQVVATRSIQSSFMCPASGSAQERASEKLKPSSFASTVLSREEKKRVTLVRKSTKISAQ--KATRVEPEVVPVSPEDVPK 79 (387)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 79 (387)
+|+..++|++++++++.+|+... ++..|.+++.+.+....+.+.....+.....++ ..++++.+++|+|||+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (581)
T PLN02623 3 AQVVATRSIDSSILSSSSGSVSL---DLLSPLSFASKVLGSEARARRRVAVRRRAVTAASLRSKSQETEVIPVSPEDGGA 79 (581)
T ss_pred cccccccccccccccCCCCcccc---cccccccccccccCchhhhhccccccccchhhhhhhccccCcceeecccccccc
Confidence 56677789999999888877543 477888888887765544433333333333222 2678899999999999664
Q ss_pred --cccccccccCccccccccccccCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHH
Q 016564 80 --RDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVK 157 (387)
Q Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR 157 (387)
++++.+.+.++++++.++.+||+.|..+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~~i~~vr 159 (581)
T PLN02623 80 NFVEDNEEVLLEIQQLGETAVGMWSKPSVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVK 159 (581)
T ss_pred ccccccccccchhhHHHhhhhhhcCCCCCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeeEEEEeCCCCeeeecCCCCCeEecCCCEEEEEecCCCCCccEEEeccCCcccccCcCCEEEEeCCeEEEE
Q 016564 158 EYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLL 237 (387)
Q Consensus 158 ~~~~~~~~~~i~I~lDL~GPkIRtG~l~~~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~ 237 (387)
+++++..+++++|++||+|||||+|.+++++.|++||+|+||.+...|+++.++++|++|++++++||.||+|||+|.|+
T Consensus 160 ~~~~~~~~~~iaIl~Dl~GPkIRig~~~~~i~l~~G~~v~lt~~~~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~ 239 (581)
T PLN02623 160 EYNAQSKDNVIAIMLDTKGPEVRSGDLPQPIMLEEGQEFTFTIKRGVSTEDCVSVNYDDFVNDVEVGDMLLVDGGMMSLA 239 (581)
T ss_pred HHHHHcCCCceEEEecCCCCceecccCCCCEEecCCCEEEEecCccCCCCCEEeechHHHHhhCCCCCEEEEeCCeEEEE
Confidence 99988766899999999999999999988999999999999988777888899999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEEECcEecCCcceeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCC
Q 016564 238 VKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGAD 317 (387)
Q Consensus 238 V~~v~~d~v~c~V~~gG~L~s~KgVn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~ 317 (387)
|++++++.++|+|++||.|+++||||+||+.+++|+|||+|++||+|++++++|||++|||++++||+++++|+.+.|.+
T Consensus 240 V~~~~~~~v~~~V~~gG~L~s~KgvNlpg~~~~lp~lTekD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~ 319 (581)
T PLN02623 240 VKSKTSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNAD 319 (581)
T ss_pred EEEEECCEEEEEEEeceEecCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccce
Q 016564 318 IHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFY 384 (387)
Q Consensus 318 i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~ 384 (387)
+.|||||||++|++||+||++.+|||||||||||+++|+++++.+|++|+++|+++|||+ +.+++
T Consensus 320 ~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpv--ivaTQ 384 (581)
T PLN02623 320 IHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPV--IVATN 384 (581)
T ss_pred ceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCE--EEECc
Confidence 999999999999999999999999999999999999999999999999999999999999 44554
No 2
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=1.3e-80 Score=620.96 Aligned_cols=277 Identities=46% Similarity=0.757 Sum_probs=250.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCCC
Q 016564 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (387)
Q Consensus 107 ~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~~ 186 (387)
||||||||||||+++++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++|++||+|||||||.+.+
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~-~~i~IllDl~GPkIRtg~l~~ 79 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELG-KPIAILLDLKGPKIRTGRLKD 79 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTT-TS-EEEEEE-TS-EBB-BBTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccC-CceEEEeccCCCcceeeeecc
Confidence 7999999999999999999999999999999999999999999999999999998774 679999999999999999976
Q ss_pred ---CeEecCCCEEEEEecCCC---CCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCe-EEEEEEECcEecCC
Q 016564 187 ---PITLTSGQEFTFTIQRGV---GSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDS-VKCEVVDGGELKSR 259 (387)
Q Consensus 187 ---~i~Lk~G~~v~lt~~~~~---g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~-v~c~V~~gG~L~s~ 259 (387)
++.|++||+|+||.+... +++..+++||++|++.+++||+||+|||.+.|+|+++.++. ++|+|.+||.|+++
T Consensus 80 g~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~~i~~~v~~~G~L~~~ 159 (348)
T PF00224_consen 80 GKKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVDGDSSIKCEVLNGGKLKSR 159 (348)
T ss_dssp SSSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEESTEEEEEEESS-EEEESS
T ss_pred ccccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEcCCcceeEEeCCCCCccCC
Confidence 699999999999988653 46789999999999999999999999999999999999999 99999999999999
Q ss_pred cceeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh
Q 016564 260 RHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (387)
Q Consensus 260 KgVn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~ 339 (387)
||||+|+..+++|.||++|.+||+|++++++|||++|||++++||.+++++|.+.|.+++|||||||++|++||+||+++
T Consensus 160 KgVnlp~~~~~lp~LtekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~ 239 (348)
T PF00224_consen 160 KGVNLPGVDLDLPALTEKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEA 239 (348)
T ss_dssp EBEEETTS---S-SS-HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHH
T ss_pred ccceecccccccccCCHHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred cCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 340 SDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
+|||||||||||+|+|++++|.+||+|++.|+++|||+ |.|++.|
T Consensus 240 sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpv--i~ATq~L 284 (348)
T PF00224_consen 240 SDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPV--IVATQML 284 (348)
T ss_dssp SSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EE--EEESSSS
T ss_pred cCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCe--eehhHhH
Confidence 99999999999999999999999999999999999999 9999876
No 3
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=1.6e-79 Score=634.38 Aligned_cols=277 Identities=48% Similarity=0.740 Sum_probs=265.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCCC
Q 016564 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (387)
Q Consensus 107 ~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~~ 186 (387)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++. +++++||+||+|||||+|.+++
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~-~~~vaIl~Dl~GPkIR~g~~~~ 102 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEK-GFAVAVMMDTEGSEIHMGDLGG 102 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHc-CCceEEEecCCCCceEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999876 5789999999999999999975
Q ss_pred --CeEecCCCEEEEEecCCCC--CccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCCcce
Q 016564 187 --PITLTSGQEFTFTIQRGVG--SAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHL 262 (387)
Q Consensus 187 --~i~Lk~G~~v~lt~~~~~g--~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~KgV 262 (387)
++.|++||+|+|+.+...| +.+.++++|++|++++++||.||+|||.|.|+|++++++.++|+|.+||.|+++|||
T Consensus 103 ~~~i~l~~G~~v~lt~~~~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~~G~l~~~Kgv 182 (509)
T PLN02762 103 ASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRANL 182 (509)
T ss_pred CccEEecCCCEEEEeCCccCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCCce
Confidence 6999999999999875345 357899999999999999999999999999999999999999999999999999999
Q ss_pred ee-------CCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC--CceEEEecCChhhhhcH
Q 016564 263 NV-------RGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA--DIHVIVKIESADSIPNL 333 (387)
Q Consensus 263 n~-------p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~--~i~IIAKIEt~~gv~NL 333 (387)
|+ |++.+++|+|||+|++||+|++++++|||++|||++++||+++|++|.+.|. +++||||||+++|++||
T Consensus 183 Nl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl 262 (509)
T PLN02762 183 TFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNL 262 (509)
T ss_pred eeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999998775 79999999999999999
Q ss_pred HHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 334 HSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 334 ~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
+||++++|||||||||||+|+|+|+||.+||+||++|+++|||+ |.|++.|
T Consensus 263 ~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPV--IvATQmL 313 (509)
T PLN02762 263 EEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPV--IVASQLL 313 (509)
T ss_pred HHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCE--EEECchH
Confidence 99999999999999999999999999999999999999999999 9999876
No 4
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=1.7e-79 Score=634.17 Aligned_cols=281 Identities=39% Similarity=0.632 Sum_probs=269.9
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecC
Q 016564 104 PTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGD 183 (387)
Q Consensus 104 p~~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~ 183 (387)
+..+|+|||||||||+++++|+|++|+++|||+||||||||++++|+++++++|+++++..+++++|++||+|||||+|.
T Consensus 34 ~~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g~ 113 (513)
T PTZ00066 34 DLRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTGF 113 (513)
T ss_pred cccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeecc
Confidence 34589999999999999999999999999999999999999999999999999999987656889999999999999999
Q ss_pred CCC--CeEecCCCEEEEEecC-CCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCCc
Q 016564 184 LPQ--PITLTSGQEFTFTIQR-GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRR 260 (387)
Q Consensus 184 l~~--~i~Lk~G~~v~lt~~~-~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~K 260 (387)
+++ ++.|++|+.|+|+.+. ..++++.++++|++|++++++||+||+|||+|.|+|++++++.++|+|++||.|+++|
T Consensus 114 ~~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~gG~l~~~K 193 (513)
T PTZ00066 114 LKNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVHDDYIITKVLNNATIGERK 193 (513)
T ss_pred cCCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCc
Confidence 975 6999999999999873 4567789999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCCCcccHHHH-HhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh
Q 016564 261 HLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (387)
Q Consensus 261 gVn~p~~~l~lp~LTe~D~~dI-~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~ 339 (387)
|||+||..+++|+||++|++|| +|++++++|||++|||++++||+++|++|.+.|.+++|||||||++|++||+||+++
T Consensus 194 gvnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~ 273 (513)
T PTZ00066 194 NMNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAE 273 (513)
T ss_pred ccccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999998 899999999999999999999999999999888899999999999999999999999
Q ss_pred cCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 340 SDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
+|||||||||||+|+|+|+||.+||+||++|+++|||+ |.|++.|
T Consensus 274 sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPV--IvATQmL 318 (513)
T PTZ00066 274 SDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPV--ITATQML 318 (513)
T ss_pred cCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCE--EEechhH
Confidence 99999999999999999999999999999999999999 9998866
No 5
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=1.1e-78 Score=605.38 Aligned_cols=271 Identities=38% Similarity=0.675 Sum_probs=261.7
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCCC-C
Q 016564 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ-P 187 (387)
Q Consensus 109 ~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~~-~ 187 (387)
++||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++.+ .++||+||+|||||+|.+++ +
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~-----~vaIl~Dl~GPkIR~G~~~~~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD-----SIKILGDVQGPKIRLGEIKGEQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh-----hcceeecCCCCcceecccCCCc
Confidence 68999999999999999999999999999999999999999999999999764 38999999999999999975 6
Q ss_pred eEecCCCEEEEEecCCCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCCcceeeCCC
Q 016564 188 ITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNVRGK 267 (387)
Q Consensus 188 i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~KgVn~p~~ 267 (387)
+.|++|++|+|+.+...++.+.++++|++|++.+++||.||+|||+|.|+|++++++.++|+|++||.|+++||||+||.
T Consensus 77 i~l~~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~v~~~v~~gG~L~s~Kgvn~pg~ 156 (352)
T PRK06739 77 ITLQAGDSFILHTQPVTGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVSTDKIETKVKTGGNISSHKGVNLPGA 156 (352)
T ss_pred EEecCCCEEEEecCccCCCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEeeCcEEcCCCCeecccc
Confidence 99999999999988666788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC-CceEEEecCChhhhhcHHHHHhhcCeEEEc
Q 016564 268 SATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPNLHSIITASDGAMVA 346 (387)
Q Consensus 268 ~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~-~i~IIAKIEt~~gv~NL~eIl~~sDGImIa 346 (387)
.+++|+||++|++||+|++++++|||++|||++++||+++|++|.+.|. +++|||||||++|++||+||++++||||||
T Consensus 157 ~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVA 236 (352)
T PRK06739 157 IVRLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIA 236 (352)
T ss_pred cCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999998764 799999999999999999999999999999
Q ss_pred CCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 347 RGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 347 RGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
|||||+|+|+|++|.+||+||+.|+++|||+ |.|++.|
T Consensus 237 RGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPv--IvATqmL 274 (352)
T PRK06739 237 RGDLGVELPYQFIPLLQKMMIQECNRTNTYV--ITATQML 274 (352)
T ss_pred CcccccccCHHHHHHHHHHHHHHHHHhCCCE--EEEcchH
Confidence 9999999999999999999999999999999 9999876
No 6
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-78 Score=619.25 Aligned_cols=279 Identities=46% Similarity=0.735 Sum_probs=268.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCC
Q 016564 105 TVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDL 184 (387)
Q Consensus 105 ~~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l 184 (387)
..+|||||||||||+++++|+|++|+++||||||||||||++++|.+.++++|++++++ +++++|++||||||||+|.+
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~-~~~vaIl~DlkGPkIR~g~~ 80 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKL-GRPVAILLDLKGPKIRTGKF 80 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHh-CCceEEEEcCCCCcceeEec
Confidence 35899999999999999999999999999999999999999999999999999999876 58999999999999999999
Q ss_pred CC-CeEecCCCEEEEEecCC--CCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCCcc
Q 016564 185 PQ-PITLTSGQEFTFTIQRG--VGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRH 261 (387)
Q Consensus 185 ~~-~i~Lk~G~~v~lt~~~~--~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~Kg 261 (387)
.+ .+.|++|++|+|+.+.. .++++.++++|++|+++|++||+||+|||++.|+|.+++++.++|+|.+||.|+++||
T Consensus 81 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~~v~~~v~n~G~l~~~Kg 160 (477)
T COG0469 81 KGGAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKG 160 (477)
T ss_pred CCCcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEeeCCEEEEEEEeCCCccCCCc
Confidence 86 69999999999999876 3456899999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCC-ceEEEecCChhhhhcHHHHHhhc
Q 016564 262 LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGAD-IHVIVKIESADSIPNLHSIITAS 340 (387)
Q Consensus 262 Vn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~-i~IIAKIEt~~gv~NL~eIl~~s 340 (387)
||+||..+++|+||++|.+||+|++++|+|||++|||++++|++++|++|.+.+.. ++||||||+++||+||+||+++|
T Consensus 161 vN~pg~~l~~palteKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~S 240 (477)
T COG0469 161 VNLPGVDLSLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEAS 240 (477)
T ss_pred eecCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999887765 99999999999999999999999
Q ss_pred CeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 341 DGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 341 DGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
|||||||||||+|+|+++||.+||+||+.||.+|||+ |.|++.|
T Consensus 241 DGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpV--ItATQML 284 (477)
T COG0469 241 DGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPV--ITATQML 284 (477)
T ss_pred CceEEEecccccccCHHHhhHHHHHHHHHHHHcCCce--EEeeccH
Confidence 9999999999999999999999999999999999999 9999876
No 7
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=7e-78 Score=622.53 Aligned_cols=278 Identities=39% Similarity=0.639 Sum_probs=266.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCC
Q 016564 106 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 185 (387)
Q Consensus 106 ~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~ 185 (387)
++|+|||||||||+++++|+|++|+++|||+||||||||++++|+++++++|+++++. +++++|++||+|||||+|.++
T Consensus 19 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~-g~~i~Il~Dl~GPkIR~g~~~ 97 (511)
T PLN02461 19 RRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANT-GILCAVMLDTKGPEIRTGFLK 97 (511)
T ss_pred cCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHc-CCCeEEEeeCCCCceeccccC
Confidence 4899999999999999999999999999999999999999999999999999999876 478999999999999999997
Q ss_pred C--CeEecCCCEEEEEecC-CCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEe--CCeEEEEEEECcEecCCc
Q 016564 186 Q--PITLTSGQEFTFTIQR-GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKT--EDSVKCEVVDGGELKSRR 260 (387)
Q Consensus 186 ~--~i~Lk~G~~v~lt~~~-~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~--~d~v~c~V~~gG~L~s~K 260 (387)
+ ++.|++||.++|+.+. ..++++.++++|++|++.+++||.||+|||+|.|+|++++ ++.++|+|.+||.|+++|
T Consensus 98 ~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~l~s~K 177 (511)
T PLN02461 98 DGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGERK 177 (511)
T ss_pred CCCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcEecCCc
Confidence 5 5999999999999873 3467789999999999999999999999999999999987 689999999999999999
Q ss_pred ceeeCCCCCCCCCCCcccHHHH-HhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh
Q 016564 261 HLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (387)
Q Consensus 261 gVn~p~~~l~lp~LTe~D~~dI-~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~ 339 (387)
|||+||..+++|+||++|++|| +|++++++|||++|||++++||+++|++|.+.+.+++|||||||++|++||+||+++
T Consensus 178 gvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~~ 257 (511)
T PLN02461 178 NVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILAE 257 (511)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999998 799999999999999999999999999998878889999999999999999999999
Q ss_pred cCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 340 SDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
+|||||||||||+|+|+|+||.+||+||+.|+++|||+ |.|++.|
T Consensus 258 sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPV--IvATQmL 302 (511)
T PLN02461 258 SDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPV--VTATQML 302 (511)
T ss_pred cCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCe--EEeehhH
Confidence 99999999999999999999999999999999999999 9999876
No 8
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=1.3e-77 Score=616.82 Aligned_cols=277 Identities=43% Similarity=0.719 Sum_probs=266.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCCC
Q 016564 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (387)
Q Consensus 107 ~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~~ 186 (387)
||+|||||||||+|+++|+|++|+++|||+||||||||++++|.++|+++|+++++. +++++|++||+|||||+|.+++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~-~~~i~Il~Dl~GPkiR~g~~~~ 79 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKT-GKKAAILLDTKGPEIRTMKLEG 79 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHh-CCCeEEEeeCCCCceeccccCC
Confidence 589999999999999999999999999999999999999999999999999999877 4789999999999999999975
Q ss_pred --CeEecCCCEEEEEecC-CCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCCccee
Q 016564 187 --PITLTSGQEFTFTIQR-GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLN 263 (387)
Q Consensus 187 --~i~Lk~G~~v~lt~~~-~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~KgVn 263 (387)
++.|++||.++|+.+. ..++.+.++++|++|++.+++||.||+|||+|.|+|++++++.++|+|++||.|+++||||
T Consensus 80 ~~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~~~~v~~~v~~~G~l~s~Kgvn 159 (470)
T PRK09206 80 GNDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVN 159 (470)
T ss_pred CCeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEEECCEecCCCcee
Confidence 5999999999999874 3467788999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcC-CCceEEEecCChhhhhcHHHHHhhcCe
Q 016564 264 VRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG-ADIHVIVKIESADSIPNLHSIITASDG 342 (387)
Q Consensus 264 ~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g-~~i~IIAKIEt~~gv~NL~eIl~~sDG 342 (387)
+||..+++|+|||+|++||+|++++|+|||++|||++++||+++++|+.+.| .++.|||||||++|++||+||++++||
T Consensus 160 ~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~Dg 239 (470)
T PRK09206 160 LPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred ccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 9999999999999999999999999999999999999999999999999887 589999999999999999999999999
Q ss_pred EEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 343 AMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 343 ImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
|||||||||+|+|+++++.+|++|+++|+++|||+ |.|++.|
T Consensus 240 ImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpv--I~ATqmL 281 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVV--ITATQML 281 (470)
T ss_pred EEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCE--EEEchhH
Confidence 99999999999999999999999999999999999 9999876
No 9
>PLN02765 pyruvate kinase
Probab=100.00 E-value=1.5e-77 Score=620.65 Aligned_cols=279 Identities=31% Similarity=0.514 Sum_probs=263.3
Q ss_pred CCCCCC-ceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeec
Q 016564 104 PTVRRK-TKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSG 182 (387)
Q Consensus 104 p~~~r~-TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG 182 (387)
..++++ |||||||||+|+++|+|++|+++||||||||||||++++|+++|+++|+++++. +++++|++||+|||||+|
T Consensus 23 ~~~~~~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~-~~~vaIl~Dl~GPkIR~g 101 (526)
T PLN02765 23 PSFFPALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNT-KKLCAVMLDTVGPELQVI 101 (526)
T ss_pred ccccCCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHh-CCCeEEEecCCCCceeee
Confidence 333554 999999999999999999999999999999999999999999999999999876 478999999999999999
Q ss_pred CCCC-CeEecCCCEEEEEecCC-CCCccEEEeccCCcccccCcCCEEEEeCC--------eEEEEEEEEeCCeEEEEEEE
Q 016564 183 DLPQ-PITLTSGQEFTFTIQRG-VGSAECVSVNYDDFVNDVEVGDMLLVDGG--------MMSLLVKSKTEDSVKCEVVD 252 (387)
Q Consensus 183 ~l~~-~i~Lk~G~~v~lt~~~~-~g~~~~i~v~~~~l~~~v~~Gd~IliDDG--------~I~l~V~~v~~d~v~c~V~~ 252 (387)
.+++ ++.|++||+|+|+.+.. .|+.+.++++|++|++.+++||+||+||| ++.|+|++++++.++|+|++
T Consensus 102 ~~~~~~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l~V~~~~~~~v~~~v~~ 181 (526)
T PLN02765 102 NKTEKPISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDEVKGDDVVCTVKN 181 (526)
T ss_pred ecCCCcEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEECCcccccccCceEEEEEEEEECCEEEEEEEe
Confidence 9975 69999999999998743 57778999999999999999999999987 89999999999999999999
Q ss_pred CcEecCC-cceeeCCCCCCCCCCCcccHHHH-HhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC-CceEEEecCChhh
Q 016564 253 GGELKSR-RHLNVRGKSATLPSITEKDWDDI-KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADS 329 (387)
Q Consensus 253 gG~L~s~-KgVn~p~~~l~lp~LTe~D~~dI-~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~-~i~IIAKIEt~~g 329 (387)
||.|+++ ||||+||+.+++|+||++|++|| .|++++++|||++|||++++||.++|++|.+.|. +++|||||||++|
T Consensus 182 gG~L~s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~a 261 (526)
T PLN02765 182 SATLAGSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLGLSQTQIFAKIENVEG 261 (526)
T ss_pred CcEECCCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCCcEEEEECCHHH
Confidence 9999994 89999999999999999999999 6999999999999999999999999999988875 8999999999999
Q ss_pred hhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 330 IPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 330 v~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
++||+||++++|||||||||||+|+|+|++|.+||+||+.|+++|||+ |. ++.|
T Consensus 262 v~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPV--I~-TQmL 315 (526)
T PLN02765 262 LTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPA--VV-TRVV 315 (526)
T ss_pred HHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCe--EE-ehhh
Confidence 999999999999999999999999999999999999999999999999 74 7765
No 10
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=5.7e-77 Score=611.90 Aligned_cols=275 Identities=36% Similarity=0.637 Sum_probs=265.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCC
Q 016564 106 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 185 (387)
Q Consensus 106 ~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~ 185 (387)
++|||||||||||+++++|+|++|+++|||+||||||||++++|+++++++|+++++.+ ++++|++||+|||||+|.++
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GpkiR~g~~~ 81 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETG-RPIGILADLQGPKLRLGRFA 81 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeeEEEeCCCCceeccccC
Confidence 47899999999999999999999999999999999999999999999999999998764 78999999999999999997
Q ss_pred C-CeEecCCCEEEEEecCCCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCCcceee
Q 016564 186 Q-PITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNV 264 (387)
Q Consensus 186 ~-~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~KgVn~ 264 (387)
+ ++.|++||+|+|+.+...|+++.++++|++|++++++||+||+|||+|.|+|++++++.++|+|.+||.|+++||||+
T Consensus 82 ~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvn~ 161 (476)
T PRK06247 82 DGKVQLANGQTFRLDVDDAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVSL 161 (476)
T ss_pred CCcEeccCCCEEEEEecccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCCcccc
Confidence 5 699999999999988666788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEE
Q 016564 265 RGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAM 344 (387)
Q Consensus 265 p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGIm 344 (387)
||..+++|.||++|++||+|++++++|||++|||++++||+++|+++. .++.|||||||++|++||+||++++||||
T Consensus 162 p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~---~~~~iiaKIEt~eav~nldeI~~~~DgIm 238 (476)
T PRK06247 162 PGTVLSVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKIIG---GRVPVMAKIEKPQAIDRLEAIVEASDAIM 238 (476)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhh---hcCeEEEEECCHHHHHhHHHHHHHcCEEE
Confidence 999999999999999999999999999999999999999999999994 47899999999999999999999999999
Q ss_pred EcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 345 VARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 345 IaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
|||||||+++|+++++.+|++|+++|+++|||+ |.|++.|
T Consensus 239 VaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpv--I~ATQmL 278 (476)
T PRK06247 239 VARGDLGVEVPLEQVPLIQKRIIRAARRAGKPV--VVATQML 278 (476)
T ss_pred EccchhccccCHHHHHHHHHHHHHHHHHhCCCE--EEECchH
Confidence 999999999999999999999999999999999 9999876
No 11
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=2.9e-76 Score=609.37 Aligned_cols=277 Identities=45% Similarity=0.716 Sum_probs=267.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCCC
Q 016564 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ 186 (387)
Q Consensus 107 ~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~~ 186 (387)
+|+|||||||||+++++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++|++||+|||||+|.+++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~il~Dl~GpkiR~g~~~~ 79 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTG-GPVAIALDTKGPEIRTGLFKG 79 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeecccCC
Confidence 5899999999999999999999999999999999999999999999999999998764 789999999999999999976
Q ss_pred --CeEecCCCEEEEEecC--CCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCC-eEEEEEEECcEecCCcc
Q 016564 187 --PITLTSGQEFTFTIQR--GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTED-SVKCEVVDGGELKSRRH 261 (387)
Q Consensus 187 --~i~Lk~G~~v~lt~~~--~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d-~v~c~V~~gG~L~s~Kg 261 (387)
++.|++||.|+|+.+. ..|+.+.++++|++|++.+++||.||+|||+|.|+|++++++ .++|+|.+||.|+++||
T Consensus 80 ~~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~i~~~v~~~G~l~~~kg 159 (480)
T cd00288 80 GKDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKG 159 (480)
T ss_pred CCceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEcCCceEEEEEEeCeEEcCCCc
Confidence 5999999999999875 357778999999999999999999999999999999999999 99999999999999999
Q ss_pred eeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcC
Q 016564 262 LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASD 341 (387)
Q Consensus 262 Vn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sD 341 (387)
||+|+..+++|.||++|++||+|++++|+|||++|||++++||+++|+|+.+.|.++.|||||||++|++||+||++++|
T Consensus 160 in~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~D 239 (480)
T cd00288 160 VNLPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASD 239 (480)
T ss_pred eEeeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred eEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 342 GAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 342 GImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
||||||||||+++|.++++.+|++|+++|+++|||+ |.|++.|
T Consensus 240 gImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpv--i~ATqmL 282 (480)
T cd00288 240 GIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPV--ITATQML 282 (480)
T ss_pred EEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCE--EEEchhH
Confidence 999999999999999999999999999999999999 8888765
No 12
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=5.3e-76 Score=619.57 Aligned_cols=280 Identities=40% Similarity=0.688 Sum_probs=268.7
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecC
Q 016564 104 PTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGD 183 (387)
Q Consensus 104 p~~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~ 183 (387)
...+|+|||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++++++ +++++|++||+|||||+|.
T Consensus 4 ~~~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~-~~~i~i~~Dl~GpkiR~g~ 82 (590)
T PRK06354 4 RDLMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKL-GKTVGILQDLQGPKIRLGR 82 (590)
T ss_pred CCCCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHh-CCCEEEEeeCCCCceeccc
Confidence 445899999999999999999999999999999999999999999999999999999877 4789999999999999999
Q ss_pred CCC-CeEecCCCEEEEEecCCCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEe--CCeEEEEEEECcEecCCc
Q 016564 184 LPQ-PITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKT--EDSVKCEVVDGGELKSRR 260 (387)
Q Consensus 184 l~~-~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~--~d~v~c~V~~gG~L~s~K 260 (387)
+++ ++.|++||+|+|+.+...++++.++++|++|++.+++||.||+|||+|.|+|++++ ++.++|+|.+||.|+++|
T Consensus 83 ~~~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~K 162 (590)
T PRK06354 83 FEDGPIELKTGDEFILTSREVLGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKK 162 (590)
T ss_pred cCCCcEEecCCCEEEEEecccCCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCC
Confidence 975 69999999999998866678889999999999999999999999999999999988 899999999999999999
Q ss_pred ceeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHh-cCCCceEEEecCChhhhhcHHHHHhh
Q 016564 261 HLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS-CGADIHVIVKIESADSIPNLHSIITA 339 (387)
Q Consensus 261 gVn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~-~g~~i~IIAKIEt~~gv~NL~eIl~~ 339 (387)
|||+||..+++|+||++|++||+|++++++|||++|||++++||.++++|+.+ .+.++.|||||||++|++|++||+++
T Consensus 163 gvn~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~ 242 (590)
T PRK06354 163 GVNFPGVSLSLPAITEKDREDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL 242 (590)
T ss_pred cccccCCccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999954 57789999999999999999999999
Q ss_pred cCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 340 SDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
+|||||||||||+|+|.++++.+|++|+++|+++|||+ |.|++.|
T Consensus 243 ~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpv--I~ATqmL 287 (590)
T PRK06354 243 CDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPV--ITATQML 287 (590)
T ss_pred cCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCE--EEEchhH
Confidence 99999999999999999999999999999999999999 9998876
No 13
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=5.1e-76 Score=613.85 Aligned_cols=299 Identities=27% Similarity=0.429 Sum_probs=280.5
Q ss_pred cccccCccccccccccccCCCCCCCCceEEEecC-CCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHh
Q 016564 84 FQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIG-PSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQ 162 (387)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~p~~~r~TKII~TIG-Pss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~ 162 (387)
.....+.+++..++..+++++..+|+|||||||| |+++++++|++|+++|||+||||||||++++|+++|++||+++++
T Consensus 115 ~~~~~g~~lL~~~~~~l~G~~~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~ 194 (608)
T PRK14725 115 VTFEEGDELLDEHAEALLGPPPSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEE 194 (608)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHH
Confidence 4455566778888889999999999999999999 699999999999999999999999999999999999999999987
Q ss_pred cCCCeeEEEEeCCCCeeeecCCCC--------------------------------------------------------
Q 016564 163 SKDNVIAIMLDTKGPEVRSGDLPQ-------------------------------------------------------- 186 (387)
Q Consensus 163 ~~~~~i~I~lDL~GPkIRtG~l~~-------------------------------------------------------- 186 (387)
. +++|+|++||+|||||||.+..
T Consensus 195 ~-gr~~~I~mDL~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd 273 (608)
T PRK14725 195 L-GRRCRIAMDLAGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGD 273 (608)
T ss_pred c-CCCEEEEEeCCCCcceEEecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCc
Confidence 6 5889999999999999999853
Q ss_pred ----------------------------------------------------------CeEecCCCEEEEEecCCCC---
Q 016564 187 ----------------------------------------------------------PITLTSGQEFTFTIQRGVG--- 205 (387)
Q Consensus 187 ----------------------------------------------------------~i~Lk~G~~v~lt~~~~~g--- 205 (387)
++.|++||+++|+.+...+
T Consensus 274 ~i~~~DaRg~~R~l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~ 353 (608)
T PRK14725 274 ELRFTDARGKKRKLTVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPA 353 (608)
T ss_pred eeeeeeccccceeeeEEeecCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccc
Confidence 4789999999999875333
Q ss_pred --Ccc--EEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEE----CcEecCCcceeeCCCCCCCCCCCcc
Q 016564 206 --SAE--CVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVD----GGELKSRRHLNVRGKSATLPSITEK 277 (387)
Q Consensus 206 --~~~--~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~----gG~L~s~KgVn~p~~~l~lp~LTe~ 277 (387)
+.. .++|+|+++++.+++||.||+|||+|.++|++++++.++|+|++ ||.|+++||||+|+..+++|.||++
T Consensus 354 ~~~~~~~~i~~t~p~l~~~v~~G~~VlidDG~I~l~V~~~~~~~v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTek 433 (608)
T PRK14725 354 QGDAPPARISCTLPEAFRAARVGERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDK 433 (608)
T ss_pred cCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHH
Confidence 344 79999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC-CceEEEecCChhhhhcHHHHHhhc-----CeEEEcCCccc
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPNLHSIITAS-----DGAMVARGDLG 351 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~-~i~IIAKIEt~~gv~NL~eIl~~s-----DGImIaRGDLg 351 (387)
|++||+|++++ +|||++|||++++||++++++|.+.|. ++.|||||||++|++||+||+.++ |||||||||||
T Consensus 434 D~~dl~f~~~~-vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLg 512 (608)
T PRK14725 434 DLEDLAFVAKH-ADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLA 512 (608)
T ss_pred HHHHHHHHHHh-CCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccc
Confidence 99999999998 999999999999999999999988764 799999999999999999999986 99999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 352 AELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 352 ~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
+|+|++++|.+||+||+.|+++|||+ |+|++.|
T Consensus 513 vEi~~e~lp~iQk~Ii~~c~~~~kPV--I~ATQmL 545 (608)
T PRK14725 513 VEVGFERLAEVQEEILWLCEAAHVPV--IWATQVL 545 (608)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCE--EEEcchH
Confidence 99999999999999999999999999 9999876
No 14
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=2.2e-75 Score=600.79 Aligned_cols=278 Identities=44% Similarity=0.695 Sum_probs=267.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCC
Q 016564 106 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 185 (387)
Q Consensus 106 ~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~ 185 (387)
.+|+|||||||||+++++|+|++|+++|||+||||||||++++|+++++++|++++++ +++++|++||+|||||+|.++
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~-~~~i~I~~Dl~GpkiR~g~~~ 80 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKL-GRPVAILLDLKGPKIRVGKFK 80 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCceeecccc
Confidence 3689999999999999999999999999999999999999999999999999999876 478999999999999999997
Q ss_pred C-CeEecCCCEEEEEecC-CCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCCccee
Q 016564 186 Q-PITLTSGQEFTFTIQR-GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLN 263 (387)
Q Consensus 186 ~-~i~Lk~G~~v~lt~~~-~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~KgVn 263 (387)
+ ++.|++||+|+|+.+. ..++++.+++||++|++++++||.||+|||+|.|+|++++++.++|+|++||.|+++||||
T Consensus 81 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgvn 160 (465)
T PRK05826 81 EGKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGIN 160 (465)
T ss_pred CCcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCceee
Confidence 6 6999999999999873 3577889999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC-CceEEEecCChhhhhcHHHHHhhcCe
Q 016564 264 VRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESADSIPNLHSIITASDG 342 (387)
Q Consensus 264 ~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~-~i~IIAKIEt~~gv~NL~eIl~~sDG 342 (387)
+||+.+++|.||++|.++|+|++++|+|+|++|||++++|++++++|+.+.|. ++.|||||||++|++||+||++++||
T Consensus 161 lp~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~Dg 240 (465)
T PRK05826 161 IPGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDG 240 (465)
T ss_pred ccCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCE
Confidence 99999999999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred EEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 343 AMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 343 ImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
|||||||||+++|.++++.+|++|+++|+++|||+ |.|++.|
T Consensus 241 ImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpv--i~ATqmL 282 (465)
T PRK05826 241 IMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPV--ITATQML 282 (465)
T ss_pred EEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCE--EEECHHH
Confidence 99999999999999999999999999999999999 7887755
No 15
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=4.2e-74 Score=593.75 Aligned_cols=298 Identities=26% Similarity=0.412 Sum_probs=279.3
Q ss_pred ccccCccccccccccccCCCCCCCCceEEEec-CCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhc
Q 016564 85 QHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTI-GPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQS 163 (387)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~p~~~r~TKII~TI-GPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~ 163 (387)
+.+.+.+++..++..+|+++..+|+||||||| ||+++++|+|++|+++|||+||||||||++++|+++|+++|++++++
T Consensus 110 ~~~~g~~~l~~~~~~l~g~~~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~ 189 (493)
T PRK08187 110 QFFAGERLLAAHTEELFGPRPAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERAT 189 (493)
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 34456677788888999999999999999999 59999999999999999999999999999999999999999999876
Q ss_pred CCCeeEEEEeCCCCeeeecCCCC---CeEecCCCEEEEEecCCCC----CccEEEeccCCcccccCcCCEEEEeCCeEEE
Q 016564 164 KDNVIAIMLDTKGPEVRSGDLPQ---PITLTSGQEFTFTIQRGVG----SAECVSVNYDDFVNDVEVGDMLLVDGGMMSL 236 (387)
Q Consensus 164 ~~~~i~I~lDL~GPkIRtG~l~~---~i~Lk~G~~v~lt~~~~~g----~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l 236 (387)
+ ++|+|++||+|||||||.+.+ ++.|++||.|+|+.+...+ +...++++|++|++.+++||.||+|||+|.|
T Consensus 190 g-~~i~Il~DL~GPKIRtG~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l 268 (493)
T PRK08187 190 G-RRCKILMDLAGPKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLGA 268 (493)
T ss_pred C-CCeEEEEeCCCCceeecccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEE
Confidence 4 789999999999999999975 4899999999999875332 4568999999999999999999999999999
Q ss_pred EEEEEeCCeEEEEEE----ECcEecCCcceeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHH
Q 016564 237 LVKSKTEDSVKCEVV----DGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLK 312 (387)
Q Consensus 237 ~V~~v~~d~v~c~V~----~gG~L~s~KgVn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~ 312 (387)
+|++++++.+.|+|+ +||+|+++||||+|+..+++|++|++|.+||.|+++ ++|+|++|||++++||..++++|.
T Consensus 269 ~V~~v~~~~v~~~V~~~~~~gg~L~~~KgiNlP~~~vrin~LtekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L~ 347 (493)
T PRK08187 269 RVERVGPGGALLEVTHARPKGLKLKPEKGLNFPDTALDLPALTEKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAALA 347 (493)
T ss_pred EEEEEeCCEEEEEEEEecCCCeEecCCCcccccCceecCCCCCHhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHHH
Confidence 999999999999998 999999999999999999999999999999999998 699999999999999999999998
Q ss_pred hcC----CCceEEEecCChhhhhcHHHHHhhcC-----eEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccc
Q 016564 313 SCG----ADIHVIVKIESADSIPNLHSIITASD-----GAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAF 383 (387)
Q Consensus 313 ~~g----~~i~IIAKIEt~~gv~NL~eIl~~sD-----GImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~ 383 (387)
+.+ .++.|||||||++|++|++||+.++| |||||||||++|+|++++|.+|++|+.+|+++|||+ |+++
T Consensus 348 ~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpv--I~AT 425 (493)
T PRK08187 348 ARRPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPV--IWAT 425 (493)
T ss_pred HhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCe--EEEc
Confidence 765 47899999999999999999998888 999999999999999999999999999999999999 9999
Q ss_pred eec
Q 016564 384 YLL 386 (387)
Q Consensus 384 ~~~ 386 (387)
+.|
T Consensus 426 QmL 428 (493)
T PRK08187 426 QVL 428 (493)
T ss_pred hhh
Confidence 876
No 16
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=2e-71 Score=574.01 Aligned_cols=276 Identities=47% Similarity=0.760 Sum_probs=263.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCCC-
Q 016564 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ- 186 (387)
Q Consensus 108 r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~~- 186 (387)
|||||||||||+++++|+|++|+++|||+||||||||++++|+++|+++|++++++ +++++|++||+|||||+|.+++
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~-~~~~~i~~Dl~GpkiR~g~~~~~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKL-GRPVAILLDTKGPEIRTGEIKGG 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCceeccccCCC
Confidence 68999999999999999999999999999999999999999999999999999876 4789999999999999999976
Q ss_pred CeEecCCCEEEEEecC--CCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCCcceee
Q 016564 187 PITLTSGQEFTFTIQR--GVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNV 264 (387)
Q Consensus 187 ~i~Lk~G~~v~lt~~~--~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~KgVn~ 264 (387)
++.|++||.|+|+.+. ..++.+.++++|++|++.+++||.||+|||+|.|+|++++++.++|+|++||.|+++||||+
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~~~~~~~~v~~~g~l~~~kgvn~ 159 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNL 159 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCceeec
Confidence 7999999999999874 34677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcC-CCceEEEecCChhhhhcHHHHHhhcCeE
Q 016564 265 RGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG-ADIHVIVKIESADSIPNLHSIITASDGA 343 (387)
Q Consensus 265 p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g-~~i~IIAKIEt~~gv~NL~eIl~~sDGI 343 (387)
||+.+++|.||++|.+||.++++.++|+|++|||++++||+.+++++.+.+ .++.|||||||++|++|++||++++||+
T Consensus 160 p~~~~~~~~ltekD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi 239 (473)
T TIGR01064 160 PGADVDLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGI 239 (473)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcE
Confidence 999999999999999999999999999999999999999999999998877 5899999999999999999999999999
Q ss_pred EEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 344 MVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 344 mIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
|+|||||++++|.++++.+|++|+.+|+++|||+ |.+++.|
T Consensus 240 ~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pv--i~atqmL 280 (473)
T TIGR01064 240 MVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPV--ITATQML 280 (473)
T ss_pred EEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCE--EEEChhh
Confidence 9999999999999999999999999999999999 6666543
No 17
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-70 Score=557.07 Aligned_cols=296 Identities=45% Similarity=0.703 Sum_probs=278.9
Q ss_pred cccccccCccccccccccccCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHH
Q 016564 82 GEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNA 161 (387)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~ 161 (387)
+|++|.+.|.. -...|...|+|||+||+||++++.|+|++|+++|||++|+|||||+|++|+++++|+|++..
T Consensus 2 s~~~~~~~L~~-------~~~~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~ 74 (501)
T KOG2323|consen 2 SFLKHECLLSG-------SNGAPKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAIS 74 (501)
T ss_pred chhhhhhhhcc-------cccccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHh
Confidence 35666666651 12377789999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeeEEEEeCCCCeeeecCCCC--CeEecCCCEEEEEecCCCCC--ccEEEeccCCcccccCcCCEEEEeCCeEEEE
Q 016564 162 QSKDNVIAIMLDTKGPEVRSGDLPQ--PITLTSGQEFTFTIQRGVGS--AECVSVNYDDFVNDVEVGDMLLVDGGMMSLL 237 (387)
Q Consensus 162 ~~~~~~i~I~lDL~GPkIRtG~l~~--~i~Lk~G~~v~lt~~~~~g~--~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~ 237 (387)
.+...+++||+|++||++|||.+++ +++|++|++++||++..... .+.+++||+++..+|++||.||+|||.+.+.
T Consensus 75 ~~~~~~~ai~LDtkGpEirtg~~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~ 154 (501)
T KOG2323|consen 75 NTGALPCAIMLDTKGPEIRTGDLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLI 154 (501)
T ss_pred hcCCcchhhhhccCCCeEeecccCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEECCceeeeE
Confidence 8887789999999999999999987 89999999999999876533 5889999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEEECcEecCCcc-eeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC
Q 016564 238 VKSKTEDSVKCEVVDGGELKSRRH-LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA 316 (387)
Q Consensus 238 V~~v~~d~v~c~V~~gG~L~s~Kg-Vn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~ 316 (387)
|+++..+.+.|+|.|+|.++|+|+ +|+||+..++|.|||+|++|++|++++++|+|++|||+.++|++++|++|.+.|.
T Consensus 155 V~~~~~~~~~c~v~n~g~l~s~k~~vnlpg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g~ 234 (501)
T KOG2323|consen 155 VKSVSKDEVTCRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRKASDVREVRKVLGESGK 234 (501)
T ss_pred EEEeecCceEEEEecCcccccccCcccCCCccccCCccChhhHHHHhcCCCCCCCEEEeeeeeehHHHHHHHHHhCccCC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999998899
Q ss_pred CceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccceec
Q 016564 317 DIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 317 ~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~~ 386 (387)
+++||+|||+.+|+.|+|||+.++||+||+|||||+|+|+|++|.+||.+|.+|+.+|||+ |-+++.|
T Consensus 235 ~ikiisKIEn~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPV--I~atqml 302 (501)
T KOG2323|consen 235 NIKLISKIENQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPV--ICATQML 302 (501)
T ss_pred cceEEEEechhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCE--EEehhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999 8777644
No 18
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=7e-66 Score=528.09 Aligned_cols=250 Identities=37% Similarity=0.602 Sum_probs=239.5
Q ss_pred CceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCCC-CeEecCCCEEEEEecC---CCCCccE
Q 016564 134 MNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQ-PITLTSGQEFTFTIQR---GVGSAEC 209 (387)
Q Consensus 134 m~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~~-~i~Lk~G~~v~lt~~~---~~g~~~~ 209 (387)
||+||||||||++++|+++++++|+++++. +++++|++||+|||||||.+++ ++.|++||+++|+.+. ..++.+.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~-~~~i~il~Dl~GPkiR~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAEL-GVNIAIALDTKGPEIRTGLFVGGEAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHh-CCCeEEEEecCCCceeccccCCCcEEecCCCEEEEEeccccccCCCCCE
Confidence 899999999999999999999999999876 4789999999999999999975 6999999999999874 3467788
Q ss_pred EEeccCCcccccCcCCEEEEeCCeEEEEEEEEeC-CeEEEEEEECcEecCCcceeeCCCCCCCCCCCcccHHHHHhhHhc
Q 016564 210 VSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTE-DSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDN 288 (387)
Q Consensus 210 i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~-d~v~c~V~~gG~L~s~KgVn~p~~~l~lp~LTe~D~~dI~~a~~~ 288 (387)
++++|++|++.+++||.||+|||+|.|+|.++++ +.++|+|++||.|+++||||+||..+++|.+|++|.++|+|++++
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~v~~~v~~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI~~ald~ 159 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVEQ 159 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEEcCCceEEEEEecCcEecCCCccccCCCccCCCCCChhhHHHHHHHHHC
Confidence 9999999999999999999999999999999886 699999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHH
Q 016564 289 KVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFIS 368 (387)
Q Consensus 289 gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~ 368 (387)
|+|||++|||++++|++++++++...|.++.|||||||++|++||+||++.+|||||||||||+|+|.++++.+|++|++
T Consensus 160 gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~ 239 (454)
T PTZ00300 160 GVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILIS 239 (454)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCccccccceec
Q 016564 369 DIRAMPRMSSSIKAFYLL 386 (387)
Q Consensus 369 ~c~aaGKp~g~id~~~~~ 386 (387)
+|+++|||+ |.|++.|
T Consensus 240 ~~~~~gkpv--I~ATQmL 255 (454)
T PTZ00300 240 KCNVAGKPV--ICATQML 255 (454)
T ss_pred HHHHcCCCE--EEECchH
Confidence 999999999 9999876
No 19
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.66 E-value=3.6e-16 Score=150.45 Aligned_cols=107 Identities=22% Similarity=0.244 Sum_probs=95.8
Q ss_pred CcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHH--------------------------HHHHhcCCCceEEEecCChh
Q 016564 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELK--------------------------NYLKSCGADIHVIVKIESAD 328 (387)
Q Consensus 275 Te~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~--------------------------~~L~~~g~~i~IIAKIEt~~ 328 (387)
...|...|++++|.|+++|++|+|+|++|++++. +|++..|.++.++++|||++
T Consensus 70 p~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~ 149 (249)
T TIGR03239 70 PWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQK 149 (249)
T ss_pred CCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHH
Confidence 4467889999999999999999999999999985 36666778899999999999
Q ss_pred hhhcHHHHHhh--cCeEEEcCCcccccCCCC------cHHHHHHHHHHHHHHCCCCccccc
Q 016564 329 SIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQVVFISDIRAMPRMSSSIK 381 (387)
Q Consensus 329 gv~NL~eIl~~--sDGImIaRGDLg~elg~e------~v~~~Qk~II~~c~aaGKp~g~id 381 (387)
|++|++||+++ .|+++||++||+.++|.. ++..+..+++.+|+++||++|++.
T Consensus 150 av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~ 210 (249)
T TIGR03239 150 GVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILA 210 (249)
T ss_pred HHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcC
Confidence 99999999987 899999999999999973 577778999999999999998654
No 20
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.65 E-value=4.5e-16 Score=150.37 Aligned_cols=108 Identities=23% Similarity=0.288 Sum_probs=96.2
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHH--------------------------HHHHhcCCCceEEEecCCh
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELK--------------------------NYLKSCGADIHVIVKIESA 327 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~--------------------------~~L~~~g~~i~IIAKIEt~ 327 (387)
+.+.|...|++++|.|+++|++|+|+|+++++++. +|++..|.++.++++|||+
T Consensus 76 vp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~ 155 (256)
T PRK10558 76 VPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQ 155 (256)
T ss_pred CCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCH
Confidence 45567889999999999999999999999999974 4666677889999999999
Q ss_pred hhhhcHHHHHhh--cCeEEEcCCcccccCCCC------cHHHHHHHHHHHHHHCCCCccccc
Q 016564 328 DSIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQVVFISDIRAMPRMSSSIK 381 (387)
Q Consensus 328 ~gv~NL~eIl~~--sDGImIaRGDLg~elg~e------~v~~~Qk~II~~c~aaGKp~g~id 381 (387)
+|++|++||+++ .|+++||++||+.++|.. ++..+..+++.+|+++||++|++.
T Consensus 156 ~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~~ 217 (256)
T PRK10558 156 QGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGILA 217 (256)
T ss_pred HHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEcC
Confidence 999999999987 889999999999999963 577788999999999999998654
No 21
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=4.5e-15 Score=140.30 Aligned_cols=112 Identities=24% Similarity=0.283 Sum_probs=99.7
Q ss_pred CCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHH---------------------------HHHHhcCCCceEEE
Q 016564 270 TLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELK---------------------------NYLKSCGADIHVIV 322 (387)
Q Consensus 270 ~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~---------------------------~~L~~~g~~i~IIA 322 (387)
++-.++..+...|+.++|.|+..+.+|+|+|+++.+++. +|+..+|.++.+++
T Consensus 70 pvVR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lv 149 (255)
T COG3836 70 PVVRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLV 149 (255)
T ss_pred CeeeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEE
Confidence 344456688899999999999999999999999999984 57778889999999
Q ss_pred ecCChhhhhcHHHHHhh--cCeEEEcCCcccccCCCC------cHHHHHHHHHHHHHHCCCCccccc
Q 016564 323 KIESADSIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQVVFISDIRAMPRMSSSIK 381 (387)
Q Consensus 323 KIEt~~gv~NL~eIl~~--sDGImIaRGDLg~elg~e------~v~~~Qk~II~~c~aaGKp~g~id 381 (387)
||||++|++|||+|+++ .||||||++||+.++|.. +|......++.+.+++||..|++-
T Consensus 150 qiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~ 216 (255)
T COG3836 150 QIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILA 216 (255)
T ss_pred EEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 99999999999999998 899999999999999974 566666899999999999999654
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.59 E-value=4.5e-15 Score=144.27 Aligned_cols=106 Identities=23% Similarity=0.298 Sum_probs=92.8
Q ss_pred cccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHH---------------------------HHhcCCCceEEEecCChh
Q 016564 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNY---------------------------LKSCGADIHVIVKIESAD 328 (387)
Q Consensus 276 e~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~---------------------------L~~~g~~i~IIAKIEt~~ 328 (387)
..|...|+.++|.|+++|++|+|+|+++++++.+. +...|.++.++++|||++
T Consensus 77 ~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~ 156 (267)
T PRK10128 77 EGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKT 156 (267)
T ss_pred CCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHH
Confidence 35667899999999999999999999999988653 334456789999999999
Q ss_pred hhhcHHHHHhh--cCeEEEcCCcccccCCCC------cHHHHHHHHHHHHHHCCCCccccc
Q 016564 329 SIPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQVVFISDIRAMPRMSSSIK 381 (387)
Q Consensus 329 gv~NL~eIl~~--sDGImIaRGDLg~elg~e------~v~~~Qk~II~~c~aaGKp~g~id 381 (387)
|++|++||+++ .|++++|++||+.++|.. ++..+.++++++|+++||++|++.
T Consensus 157 a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~ 217 (267)
T PRK10128 157 ALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLA 217 (267)
T ss_pred HHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcC
Confidence 99999999988 899999999999999963 566777999999999999998653
No 23
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.58 E-value=1.8e-15 Score=142.08 Aligned_cols=104 Identities=23% Similarity=0.277 Sum_probs=88.4
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhc-------CCCceEEEecCChhhhhcHHHHHhh--cCeEEEcCC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSC-------GADIHVIVKIESADSIPNLHSIITA--SDGAMVARG 348 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~-------g~~i~IIAKIEt~~gv~NL~eIl~~--sDGImIaRG 348 (387)
-.+||+ +++.|+|+|++|+|+++++++++.+++... +.++.++++|||++||+|++||++. .|++++|++
T Consensus 74 ~~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~ 152 (221)
T PF03328_consen 74 IERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPA 152 (221)
T ss_dssp HHHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HH
T ss_pred hhhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcH
Confidence 355677 999999999999999999999999988654 2468999999999999999999955 589999999
Q ss_pred cccccCCCC------cHHHHHHHHHHHHHHCCCCccccccce
Q 016564 349 DLGAELPIE------EVPLLQVVFISDIRAMPRMSSSIKAFY 384 (387)
Q Consensus 349 DLg~elg~e------~v~~~Qk~II~~c~aaGKp~g~id~~~ 384 (387)
||+.++|.. ++.++.++++.+|+++||++ |+++|
T Consensus 153 Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~--i~~~~ 192 (221)
T PF03328_consen 153 DLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPA--IDGVF 192 (221)
T ss_dssp HHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEE--EEEEE
T ss_pred HHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCe--EEEee
Confidence 999999985 47888899999999999987 88876
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.52 E-value=3.3e-14 Score=136.78 Aligned_cols=105 Identities=21% Similarity=0.223 Sum_probs=90.4
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhc---------------------------CCCceEEEecCChhh
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSC---------------------------GADIHVIVKIESADS 329 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~---------------------------g~~i~IIAKIEt~~g 329 (387)
.|..+|+.+++.|+|+|++|+|+|+++++++.++++.. |.++.++++|||++|
T Consensus 72 ~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~a 151 (249)
T TIGR02311 72 GDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREA 151 (249)
T ss_pred CCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHH
Confidence 44558999999999999999999999999998877521 125779999999999
Q ss_pred hhcHHHHHhh--cCeEEEcCCcccccCCCC------cHHHHHHHHHHHHHHCCCCccccc
Q 016564 330 IPNLHSIITA--SDGAMVARGDLGAELPIE------EVPLLQVVFISDIRAMPRMSSSIK 381 (387)
Q Consensus 330 v~NL~eIl~~--sDGImIaRGDLg~elg~e------~v~~~Qk~II~~c~aaGKp~g~id 381 (387)
++|++||+++ .|++|+|++||+.++|.. ++..+.++++.+|+.+||+.|+..
T Consensus 152 v~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~ 211 (249)
T TIGR02311 152 LDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILT 211 (249)
T ss_pred HHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecC
Confidence 9999999987 789999999999999973 455667889999999999998654
No 25
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.50 E-value=9e-14 Score=136.31 Aligned_cols=109 Identities=22% Similarity=0.233 Sum_probs=96.2
Q ss_pred CcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhc-------CCCceEEEecCChhhhhcHHHHHhh---cCeEE
Q 016564 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSC-------GADIHVIVKIESADSIPNLHSIITA---SDGAM 344 (387)
Q Consensus 275 Te~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~-------g~~i~IIAKIEt~~gv~NL~eIl~~---sDGIm 344 (387)
|++...||+.+++.|+++|++|+|+++++++.+.+++... +.++.++++|||++|+.|+++|+.+ .|+++
T Consensus 71 ~~~~~~di~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~ 150 (288)
T TIGR01588 71 TPFGLADIKAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIA 150 (288)
T ss_pred ChhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEE
Confidence 4456788999999999999999999999999998887542 2468899999999999999999965 56999
Q ss_pred EcCCcccccCCCC------cHHHHHHHHHHHHHHCCCCcccccccee
Q 016564 345 VARGDLGAELPIE------EVPLLQVVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 345 IaRGDLg~elg~e------~v~~~Qk~II~~c~aaGKp~g~id~~~~ 385 (387)
+|+.||+.++|.. ++.++..+++.+|+++|+++ ||++|.
T Consensus 151 ~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~--id~v~~ 195 (288)
T TIGR01588 151 LGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAA--FDTVYS 195 (288)
T ss_pred eCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCc--ccCCcc
Confidence 9999999999973 47888899999999999998 999984
No 26
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=99.12 E-value=8.7e-11 Score=114.97 Aligned_cols=109 Identities=28% Similarity=0.287 Sum_probs=97.5
Q ss_pred CcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCce---EEEecCChhhhhcHHHHHhhc---CeEEEcCC
Q 016564 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIH---VIVKIESADSIPNLHSIITAS---DGAMVARG 348 (387)
Q Consensus 275 Te~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~---IIAKIEt~~gv~NL~eIl~~s---DGImIaRG 348 (387)
|++..+|+..++..++|+|.+|+++++.|+.++...+.+...... +++.|||++|+.|..||+.++ .|+.+|..
T Consensus 66 t~~g~~Dl~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 66 TPWGADDLAAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred ChhhHHHHHHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 557788999999999999999999999999999999876554433 999999999999999999986 69999999
Q ss_pred cccccCCCC-------cHHHHHHHHHHHHHHCCCCcccccccee
Q 016564 349 DLGAELPIE-------EVPLLQVVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 349 DLg~elg~e-------~v~~~Qk~II~~c~aaGKp~g~id~~~~ 385 (387)
||..++|.. .+.++..+|+.+|+++|+.+ ||++|+
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a--~D~V~~ 187 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAA--IDGVYT 187 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCc--cccccc
Confidence 999999863 46678899999999999999 999985
No 27
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.09 E-value=1.9e-10 Score=126.71 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=90.4
Q ss_pred CcccHHHHHhhHh-cCCCE--EEEcCCCCHHHHHHHHHHHHhcC-----CCceEEEecCChhhhhcHHHHHhhcCeEEEc
Q 016564 275 TEKDWDDIKFGVD-NKVDF--YAVSFVKDAQVVHELKNYLKSCG-----ADIHVIVKIESADSIPNLHSIITASDGAMVA 346 (387)
Q Consensus 275 Te~D~~dI~~a~~-~gvD~--I~lSfV~sa~dV~~l~~~L~~~g-----~~i~IIAKIEt~~gv~NL~eIl~~sDGImIa 346 (387)
-+...+.|..+++ .|++. |++|||++++++++++++++..| .++.+++||||+.|+.|+++|++++|+++||
T Consensus 619 f~~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IG 698 (795)
T PRK06464 619 FALECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSIG 698 (795)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEEC
Confidence 3455677788888 79988 99999999999999999886543 3689999999999999999999999999999
Q ss_pred CCcccc-cCCC---------------CcHHHHHHHHHHHHHHCCCCccc
Q 016564 347 RGDLGA-ELPI---------------EEVPLLQVVFISDIRAMPRMSSS 379 (387)
Q Consensus 347 RGDLg~-elg~---------------e~v~~~Qk~II~~c~aaGKp~g~ 379 (387)
++||+. .+|+ +.+..+.++++++|+++|||+|+
T Consensus 699 tnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgi 747 (795)
T PRK06464 699 SNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGI 747 (795)
T ss_pred chHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999997 4553 24666779999999999999984
No 28
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.09 E-value=1.7e-10 Score=126.98 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=88.7
Q ss_pred ccHHHHHhhH-hcCCCE--EEEcCCCCHHHHHHHHHHHHhcC-----CCceEEEecCChhhhhcHHHHHhhcCeEEEcCC
Q 016564 277 KDWDDIKFGV-DNKVDF--YAVSFVKDAQVVHELKNYLKSCG-----ADIHVIVKIESADSIPNLHSIITASDGAMVARG 348 (387)
Q Consensus 277 ~D~~dI~~a~-~~gvD~--I~lSfV~sa~dV~~l~~~L~~~g-----~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRG 348 (387)
...+.|..++ +.|+.. |++|||+++++++++++.+...+ .++.+++||||+.|+.|+++|++++|+++||++
T Consensus 614 ~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtn 693 (782)
T TIGR01418 614 LECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSN 693 (782)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECch
Confidence 4456667777 789988 99999999999999999887543 248899999999999999999999999999999
Q ss_pred cccc-cCCC---------------CcHHHHHHHHHHHHHHCCCCccc
Q 016564 349 DLGA-ELPI---------------EEVPLLQVVFISDIRAMPRMSSS 379 (387)
Q Consensus 349 DLg~-elg~---------------e~v~~~Qk~II~~c~aaGKp~g~ 379 (387)
||+. .+|+ +.+..+.++++++|+++|||+|+
T Consensus 694 DLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgi 740 (782)
T TIGR01418 694 DLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGI 740 (782)
T ss_pred HHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9997 5554 24667779999999999999984
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.04 E-value=4.7e-10 Score=119.54 Aligned_cols=108 Identities=16% Similarity=0.075 Sum_probs=91.6
Q ss_pred CCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHh-----------cCCCceEEEecCChhhhhcHHHHHhhc
Q 016564 272 PSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS-----------CGADIHVIVKIESADSIPNLHSIITAS 340 (387)
Q Consensus 272 p~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~-----------~g~~i~IIAKIEt~~gv~NL~eIl~~s 340 (387)
|.+-......|..+.+.|...|++|||+++++++++++++.. .+.++.+.++|||+.|+.++++|++.+
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~v 445 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEV 445 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhC
Confidence 444455566778889999999999999999999999987753 245689999999999999999999999
Q ss_pred CeEEEcCCcccc-----c-----CCC------CcHHHHHHHHHHHHHHCCCCccc
Q 016564 341 DGAMVARGDLGA-----E-----LPI------EEVPLLQVVFISDIRAMPRMSSS 379 (387)
Q Consensus 341 DGImIaRGDLg~-----e-----lg~------e~v~~~Qk~II~~c~aaGKp~g~ 379 (387)
|+++||+.||+. + ++. +.+..+.++++++|+++|||+|.
T Consensus 446 Df~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~v 500 (565)
T TIGR01417 446 DFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGM 500 (565)
T ss_pred CEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEE
Confidence 999999999988 3 552 25667779999999999999973
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=98.95 E-value=1.9e-09 Score=115.04 Aligned_cols=108 Identities=15% Similarity=0.037 Sum_probs=90.2
Q ss_pred CCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHh-----------cCCCceEEEecCChhhhhcHHHHHhh
Q 016564 271 LPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS-----------CGADIHVIVKIESADSIPNLHSIITA 339 (387)
Q Consensus 271 lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~-----------~g~~i~IIAKIEt~~gv~NL~eIl~~ 339 (387)
-|.+-......|..+.+.|...|++|||.++++++++++.+.. .+.++.+.++|||+.|+.|+++|++.
T Consensus 366 ~~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~~ 445 (575)
T PRK11177 366 RKEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKE 445 (575)
T ss_pred CHHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHhh
Confidence 3444455666777888899999999999999999999877652 23568999999999999999999999
Q ss_pred cCeEEEcCCcccccC-----CC-----------CcHHHHHHHHHHHHHHCCCCcc
Q 016564 340 SDGAMVARGDLGAEL-----PI-----------EEVPLLQVVFISDIRAMPRMSS 378 (387)
Q Consensus 340 sDGImIaRGDLg~el-----g~-----------e~v~~~Qk~II~~c~aaGKp~g 378 (387)
+|++.||+.||+.-+ +- +.+..+.++++++|+++|||+|
T Consensus 446 vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~ 500 (575)
T PRK11177 446 VDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTG 500 (575)
T ss_pred CCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEE
Confidence 999999999999833 31 2566677999999999999986
No 31
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.93 E-value=1.8e-08 Score=105.57 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=131.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHH---HHHHHHHhcCCCeeEEEEeCCCCeeeecC
Q 016564 107 RRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVID---LVKEYNAQSKDNVIAIMLDTKGPEVRSGD 183 (387)
Q Consensus 107 ~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~---~iR~~~~~~~~~~i~I~lDL~GPkIRtG~ 183 (387)
.|++-| | ||. +..++.+.+.+|++++=+.|--+....|+.+++ |++++.... +|...|
T Consensus 66 ~RRvei--t-gP~--d~km~inAlnsgad~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~--------i~~~~~------ 126 (511)
T TIGR01344 66 DRRVEI--T-GPV--DRKMVINALNAGAKVFMADFEDSSSPTWENVIYGQINLRDAIRGQ--------IDFTDP------ 126 (511)
T ss_pred CCeeEE--e-CCC--CHHHHHHHhcCCCCEEEeCcccCCCCCchhHHHHHHHHHHHHhCc--------CCCcCC------
Confidence 355555 3 787 689999999999999999999988777877665 455543311 011111
Q ss_pred CCCCeEecCCCEEEEEecCCCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCCccee
Q 016564 184 LPQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLN 263 (387)
Q Consensus 184 l~~~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~KgVn 263 (387)
++|..+++.. +. -...|-..|.-...++|.
T Consensus 127 -------~~gk~y~l~~-----~~--------------------------------------~~liVRprG~hl~e~hv~ 156 (511)
T TIGR01344 127 -------TSGKEYALNA-----RL--------------------------------------AVLIVRPRGWHLPERHLT 156 (511)
T ss_pred -------CCCceeecCC-----Cc--------------------------------------eEEEEecCCCCCCcchhc
Confidence 1133333210 00 001111112222222222
Q ss_pred -----eCCCCCCCCCCCcccHHHHHhhHhcC-CCEEEEcCCCCHHHHHHHHHHHHhc----C---CCceEEEecCChhhh
Q 016564 264 -----VRGKSATLPSITEKDWDDIKFGVDNK-VDFYAVSFVKDAQVVHELKNYLKSC----G---ADIHVIVKIESADSI 330 (387)
Q Consensus 264 -----~p~~~l~lp~LTe~D~~dI~~a~~~g-vD~I~lSfV~sa~dV~~l~~~L~~~----g---~~i~IIAKIEt~~gv 330 (387)
+|+.-+++-....+ |++..++.| --+|.+|+++++++++.+.+.+... | +.++++++|||+.|+
T Consensus 157 ~dg~~~~~~l~Dfgl~~~h---d~~~l~~~g~Gp~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~ 233 (511)
T TIGR01344 157 IDGEAIPGSLFDFGLYFFH---NARALLKKGKGPYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAA 233 (511)
T ss_pred cCCCcCchHHHHHHHHHHh---hHHHHHhCCCCCEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHH
Confidence 22333343223333 344445542 2499999999999999998887533 2 468999999999999
Q ss_pred hcHHHHHhh----cCeEEEcCCcccccCC----C----------------CcHHHHHHHHHHHHHHCCCCcccccccee
Q 016564 331 PNLHSIITA----SDGAMVARGDLGAELP----I----------------EEVPLLQVVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 331 ~NL~eIl~~----sDGImIaRGDLg~elg----~----------------e~v~~~Qk~II~~c~aaGKp~g~id~~~~ 385 (387)
.|++||+.+ +.|+..||.|+..++. . +-+...++.++.+|+++|+.+ |||+|.
T Consensus 234 ~nm~EIa~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~A--IdGm~a 310 (511)
T TIGR01344 234 FEMDEILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHA--MGGMAA 310 (511)
T ss_pred HhHHHHHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCc--cCchhc
Confidence 999999986 3499999999995444 1 122334778889999999999 999964
No 32
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.92 E-value=1.5e-08 Score=106.26 Aligned_cols=103 Identities=11% Similarity=0.067 Sum_probs=82.9
Q ss_pred HHHHhhHhc--CCCEEEEcCCCCHHHHHHHHHHHHhc----C---CCceEEEecCChhhhhcHHHHHhhc----CeEEEc
Q 016564 280 DDIKFGVDN--KVDFYAVSFVKDAQVVHELKNYLKSC----G---ADIHVIVKIESADSIPNLHSIITAS----DGAMVA 346 (387)
Q Consensus 280 ~dI~~a~~~--gvD~I~lSfV~sa~dV~~l~~~L~~~----g---~~i~IIAKIEt~~gv~NL~eIl~~s----DGImIa 346 (387)
.|++..++. |+ ||.+|++++++|++.+.+.+... | +.++++++|||+.|+.|++||+.++ .|+..|
T Consensus 174 hd~~~l~~~g~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G 252 (511)
T cd00727 174 HNAKALLARGSGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCG 252 (511)
T ss_pred hhHHHHHhcCCCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcC
Confidence 344444554 48 99999999999999999888643 2 4689999999999999999999774 499999
Q ss_pred CCcccccCC----C-------C--------cHHHH-HHHHHHHHHHCCCCcccccccee
Q 016564 347 RGDLGAELP----I-------E--------EVPLL-QVVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 347 RGDLg~elg----~-------e--------~v~~~-Qk~II~~c~aaGKp~g~id~~~~ 385 (387)
|.|+..+++ . + .+..+ ++.++.+|+++|+.+ |||+|.
T Consensus 253 ~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~A--IdGm~a 309 (511)
T cd00727 253 RWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHA--MGGMAA 309 (511)
T ss_pred hHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCc--ccchhh
Confidence 999999883 1 1 13333 677999999999999 999973
No 33
>PRK09255 malate synthase; Validated
Probab=98.81 E-value=4.7e-08 Score=103.06 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=78.4
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHhc----C---CCceEEEecCChhhhhcHHHHHhhc----CeEEEcCCccccc---
Q 016564 288 NKVDFYAVSFVKDAQVVHELKNYLKSC----G---ADIHVIVKIESADSIPNLHSIITAS----DGAMVARGDLGAE--- 353 (387)
Q Consensus 288 ~gvD~I~lSfV~sa~dV~~l~~~L~~~----g---~~i~IIAKIEt~~gv~NL~eIl~~s----DGImIaRGDLg~e--- 353 (387)
.|+ +|.+|++++++|++.+.+++... | +.+++++.|||+.|+.|++||+.++ -|+..||.|+..+
T Consensus 205 ~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~ik 283 (531)
T PRK09255 205 SGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYIK 283 (531)
T ss_pred CCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHHH
Confidence 467 99999999999999999888643 2 4689999999999999999999874 4999999999976
Q ss_pred -CCCC---------------cHHH-HHHHHHHHHHHCCCCcccccccee
Q 016564 354 -LPIE---------------EVPL-LQVVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 354 -lg~e---------------~v~~-~Qk~II~~c~aaGKp~g~id~~~~ 385 (387)
++.. .+.. .++.++.+|+++|+.+ |||+|.
T Consensus 284 ~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~A--IdGm~a 330 (531)
T PRK09255 284 TLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHA--MGGMAA 330 (531)
T ss_pred HhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCc--cCchhh
Confidence 3311 2333 4678889999999999 999974
No 34
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.80 E-value=1.9e-07 Score=98.55 Aligned_cols=94 Identities=10% Similarity=0.076 Sum_probs=79.8
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHHhcC-------CCceEEEecCChhhhhcHHHHHhhc-C---eEEEcCCcccccCCCC-
Q 016564 290 VDFYAVSFVKDAQVVHELKNYLKSCG-------ADIHVIVKIESADSIPNLHSIITAS-D---GAMVARGDLGAELPIE- 357 (387)
Q Consensus 290 vD~I~lSfV~sa~dV~~l~~~L~~~g-------~~i~IIAKIEt~~gv~NL~eIl~~s-D---GImIaRGDLg~elg~e- 357 (387)
--||.+|++++++++..+.+.+.... +.+++++.|||+.|+.|++||+.++ + |+..|+.|+..+++..
T Consensus 185 gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~~ 264 (511)
T cd00480 185 GPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKTF 264 (511)
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhcccc
Confidence 34899999999999999998875432 3689999999999999999999873 4 9999999999999531
Q ss_pred ------------------c-HHHHHHHHHHHHHHCCCCcccccccee
Q 016564 358 ------------------E-VPLLQVVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 358 ------------------~-v~~~Qk~II~~c~aaGKp~g~id~~~~ 385 (387)
. +..+++.++.+|+++|.++ |||+|.
T Consensus 265 ~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~A--Idg~~a 309 (511)
T cd00480 265 RNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHA--MGGMAA 309 (511)
T ss_pred ccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCc--cccchh
Confidence 1 4455788999999999999 999984
No 35
>PLN02626 malate synthase
Probab=98.49 E-value=1.9e-06 Score=90.78 Aligned_cols=93 Identities=12% Similarity=0.199 Sum_probs=77.4
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhc----C---CCceEEEecCChhhhhcHHHHHhhc----CeEEEcCCcc----cccCC
Q 016564 291 DFYAVSFVKDAQVVHELKNYLKSC----G---ADIHVIVKIESADSIPNLHSIITAS----DGAMVARGDL----GAELP 355 (387)
Q Consensus 291 D~I~lSfV~sa~dV~~l~~~L~~~----g---~~i~IIAKIEt~~gv~NL~eIl~~s----DGImIaRGDL----g~elg 355 (387)
-||.+|+++++++++.+.+++... | +.+++.+.|||..|+-|++||+.++ -|+..||-|+ ...++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 599999999999999998877533 2 5699999999999999999999875 4999999999 55544
Q ss_pred CC---------c----HHHHHH---HHHHHHHHCCCCcccccccee
Q 016564 356 IE---------E----VPLLQV---VFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 356 ~e---------~----v~~~Qk---~II~~c~aaGKp~g~id~~~~ 385 (387)
.. . .+.++. .++.+|+++|..+ |+|+|.
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~A--IgGM~a 336 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHA--MGGMAA 336 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCcc--cccccc
Confidence 21 2 555555 9999999999999 999985
No 36
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=97.95 E-value=3.2e-05 Score=76.63 Aligned_cols=202 Identities=17% Similarity=0.153 Sum_probs=127.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhC---CceeEeec---CCCCHHHHHHHHHHHHHHHHhcCCCeeEE-EEeCCCCee
Q 016564 107 RRKTKIVCTIGPSTNTREMIWKLAEAG---MNVARLNM---SHGDHASHQKVIDLVKEYNAQSKDNVIAI-MLDTKGPEV 179 (387)
Q Consensus 107 ~r~TKII~TIGPss~~~e~i~~Li~aG---m~v~RiN~---SHg~~e~~~~~I~~iR~~~~~~~~~~i~I-~lDL~GPkI 179 (387)
.+++++.+-+|- .+.+..+.+.| +-.+|--| .++......+..+.+++..+...++|+.| .+|..|-|.
T Consensus 17 g~~i~l~aNi~~----~~d~~~~~~~gadGIGL~RtEfl~l~~~~~p~e~eq~~~y~~i~~~~~~~pV~iRtlD~g~dK~ 92 (293)
T PF02896_consen 17 GTRIKLMANIGS----PEDAEKALELGADGIGLFRTEFLFLNRGRPPSEEEQYEIYRKIAEAMGGKPVTIRTLDIGGDKP 92 (293)
T ss_dssp S-BSEEEEEESS----GHHHHHHHHTT-SSEEEEECHHHHSSSSSHHHHHHHHHHHHHHHHHTTTSEEEEE---SBCCCG
T ss_pred CCEEEEEEeCCC----HHHHHHHHhcCCccccchhhhhhhhcCCCCchHHHHHHHHHHHHHHhccCcEEEEecCCCCCcc
Confidence 568899998854 44555555555 55677644 45566667777888888777777777766 566655431
Q ss_pred eecCCCCCeEecCCCEEEEEecCCCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCC
Q 016564 180 RSGDLPQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSR 259 (387)
Q Consensus 180 RtG~l~~~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~ 259 (387)
=.+. . . ..+ + .+-.| ..
T Consensus 93 l~~~-----------------~-----------~---~~~----------------------E---------~NP~L-G~ 109 (293)
T PF02896_consen 93 LPYL-----------------S-----------R---EPK----------------------E---------ENPAL-GL 109 (293)
T ss_dssp SCSS-----------------H-----------H---CH---------------------------------SSGGG-SS
T ss_pred CCcc-----------------c-----------c---ccc----------------------c---------ccccc-cc
Confidence 1100 0 0 000 0 00000 11
Q ss_pred cceeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhc-----------CCCceEEEecCChh
Q 016564 260 RHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSC-----------GADIHVIVKIESAD 328 (387)
Q Consensus 260 KgVn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~-----------g~~i~IIAKIEt~~ 328 (387)
+||.+- +.-|.+-....+.|..+...|-=.|++|||.+.+++.++++++.+. +.++++-++||+|.
T Consensus 110 RGiR~~---l~~p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPs 186 (293)
T PF02896_consen 110 RGIRRS---LAHPELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPS 186 (293)
T ss_dssp BTHHHH---HHSHHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHH
T ss_pred cccccc---ccchhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhH
Confidence 233321 2224555556666777777776679999999999999999987654 24689999999999
Q ss_pred hhhcHHHHHhhcCeEEEcCCccc-----ccCCCC-----------cHHHHHHHHHHHHHHCCCCcc
Q 016564 329 SIPNLHSIITASDGAMVARGDLG-----AELPIE-----------EVPLLQVVFISDIRAMPRMSS 378 (387)
Q Consensus 329 gv~NL~eIl~~sDGImIaRGDLg-----~elg~e-----------~v~~~Qk~II~~c~aaGKp~g 378 (387)
++-.++++++.+|.+-||-.||. ++=.-+ -+...-++++++|+++|||++
T Consensus 187 aal~~~~~~~~~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vs 252 (293)
T PF02896_consen 187 AALMADEFAKEVDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVS 252 (293)
T ss_dssp HHHTHHHHHTTSSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHCCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEE
Confidence 99999999999999999999983 222211 245556899999999999975
No 37
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.08 E-value=0.00074 Score=74.79 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=74.0
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHh--------cC---CCceEEEecCChhhhhcHHHHHhhcCeEEEcCCccc-----
Q 016564 288 NKVDFYAVSFVKDAQVVHELKNYLKS--------CG---ADIHVIVKIESADSIPNLHSIITASDGAMVARGDLG----- 351 (387)
Q Consensus 288 ~gvD~I~lSfV~sa~dV~~l~~~L~~--------~g---~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg----- 351 (387)
.|-=.|++|||.+.+++.++++.+++ .| .++.+-+|||+|.++--++++++.+|.+-||-.||.
T Consensus 549 ~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGtNDL~Qy~la 628 (748)
T PRK11061 549 TGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLA 628 (748)
T ss_pred CCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHHH
Confidence 45557999999999999999988763 13 236799999999999999999999999999999974
Q ss_pred ccCCCC-----------cHHHHHHHHHHHHHHCCCCcc
Q 016564 352 AELPIE-----------EVPLLQVVFISDIRAMPRMSS 378 (387)
Q Consensus 352 ~elg~e-----------~v~~~Qk~II~~c~aaGKp~g 378 (387)
++=+-+ -|..+.++++.+|+++|||++
T Consensus 629 ~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~ 666 (748)
T PRK11061 629 VDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVS 666 (748)
T ss_pred hcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEE
Confidence 333322 345556899999999999975
No 38
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.85 E-value=0.0033 Score=66.51 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=79.0
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcCC-----------------------CceEEEecCChhhhhcHHHHHhh----cC
Q 016564 289 KVDFYAVSFVKDAQVVHELKNYLKSCGA-----------------------DIHVIVKIESADSIPNLHSIITA----SD 341 (387)
Q Consensus 289 gvD~I~lSfV~sa~dV~~l~~~L~~~g~-----------------------~i~IIAKIEt~~gv~NL~eIl~~----sD 341 (387)
.+--|++||.++++||.++..+.++.+- .+.||.-+||.+++.|.++|+.. .+
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 3456999999999999999888776541 35899999999999999999986 11
Q ss_pred ----eEEEcCCcccccCCC----CcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 342 ----GAMVARGDLGAELPI----EEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 342 ----GImIaRGDLg~elg~----e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
-||+||.|=+.+.|. ..+..+|+++.+.|+++|.++-.|-|
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pfhG 250 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPIIG 250 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEEee
Confidence 789999999999997 35788999999999999999754443
No 39
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.007 Score=64.67 Aligned_cols=101 Identities=13% Similarity=0.046 Sum_probs=81.7
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHH-------hcC----CCceEEEecCChhhhhcHHHHHhhcCeEEEc
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLK-------SCG----ADIHVIVKIESADSIPNLHSIITASDGAMVA 346 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~-------~~g----~~i~IIAKIEt~~gv~NL~eIl~~sDGImIa 346 (387)
....|-+|-.+|-=.|++|+|-+.++++.+++.+. ..| .++.+=.|||+|.+.-.++.+++.+|-+=||
T Consensus 374 QLRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFfSIG 453 (574)
T COG1080 374 QLRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFFSIG 453 (574)
T ss_pred HHHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhCCEeeec
Confidence 34445566667888899999999999999998774 222 3688889999999999999999999999999
Q ss_pred CCcc-----cccCCCC-----------cHHHHHHHHHHHHHHCCCCcc
Q 016564 347 RGDL-----GAELPIE-----------EVPLLQVVFISDIRAMPRMSS 378 (387)
Q Consensus 347 RGDL-----g~elg~e-----------~v~~~Qk~II~~c~aaGKp~g 378 (387)
-.|| +++=+-+ .|-.+.+.+|..++++||++|
T Consensus 454 TNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvg 501 (574)
T COG1080 454 TNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVG 501 (574)
T ss_pred ccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeee
Confidence 9996 4444443 244556899999999999987
No 40
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=96.55 E-value=0.01 Score=66.84 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=79.9
Q ss_pred CCCCcccHHHHHhhHhc----CCC---EEEEcCCCCHHHHHHHHHHHHhc--------C--CCceEEEecCChhhhhcHH
Q 016564 272 PSITEKDWDDIKFGVDN----KVD---FYAVSFVKDAQVVHELKNYLKSC--------G--ADIHVIVKIESADSIPNLH 334 (387)
Q Consensus 272 p~LTe~D~~dI~~a~~~----gvD---~I~lSfV~sa~dV~~l~~~L~~~--------g--~~i~IIAKIEt~~gv~NL~ 334 (387)
|.+-+-....|-.|... |.. -|++|||.+.+++..+++.+.+. | -++.|-++||+|.|.-.++
T Consensus 670 pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~ad 749 (856)
T TIGR01828 670 PEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTAD 749 (856)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHHH
Confidence 44445555555444333 632 69999999999999999877632 2 2478999999999999999
Q ss_pred HHHhhcCeEEEcCCcccccC-CC----------------------------CcHHHHHHHHHHHHHH--CCCCccc
Q 016564 335 SIITASDGAMVARGDLGAEL-PI----------------------------EEVPLLQVVFISDIRA--MPRMSSS 379 (387)
Q Consensus 335 eIl~~sDGImIaRGDLg~el-g~----------------------------e~v~~~Qk~II~~c~a--aGKp~g~ 379 (387)
+|++.+|.+-||-.||.--+ |+ +-|..+.+.++++|++ +|+++|+
T Consensus 750 ~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgv 825 (856)
T TIGR01828 750 KIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGI 825 (856)
T ss_pred HHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEe
Confidence 99999999999988875211 21 1244556889999998 8999874
No 41
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=96.48 E-value=0.009 Score=63.12 Aligned_cols=95 Identities=17% Similarity=0.126 Sum_probs=80.2
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHhcC--------------CCceEEEecCChhhhhcHHHHHhh----------cCeE
Q 016564 288 NKVDFYAVSFVKDAQVVHELKNYLKSCG--------------ADIHVIVKIESADSIPNLHSIITA----------SDGA 343 (387)
Q Consensus 288 ~gvD~I~lSfV~sa~dV~~l~~~L~~~g--------------~~i~IIAKIEt~~gv~NL~eIl~~----------sDGI 343 (387)
..+-.+++||+++++|+.++..++++.+ ..+.|+.-+||.+.+.|.++|+.. .--|
T Consensus 120 ~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qeV 199 (494)
T PRK13655 120 QPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLRV 199 (494)
T ss_pred hhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeEE
Confidence 3456799999999999999988776554 147899999999999999999975 1289
Q ss_pred EEcCCcccccCCC----CcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 344 MVARGDLGAELPI----EEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 344 mIaRGDLg~elg~----e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
|+|+.|=+.+-|+ ..+..+|.++.+.|+++|+++-.|-|
T Consensus 200 mlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~fhG 242 (494)
T PRK13655 200 FLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYPILG 242 (494)
T ss_pred EEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEEecc
Confidence 9999999999997 36788999999999999998754543
No 42
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=96.08 E-value=0.023 Score=64.77 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=83.6
Q ss_pred HHHHHhhHhcCCC---EEEEcCCCCHHHHHHHHHHHHhcCC-----CceEEEecCChhhhhcHHHHHhh--c--------
Q 016564 279 WDDIKFGVDNKVD---FYAVSFVKDAQVVHELKNYLKSCGA-----DIHVIVKIESADSIPNLHSIITA--S-------- 340 (387)
Q Consensus 279 ~~dI~~a~~~gvD---~I~lSfV~sa~dV~~l~~~L~~~g~-----~i~IIAKIEt~~gv~NL~eIl~~--s-------- 340 (387)
.+-++.+.+.|.+ .+++|+++++.||.++.-+.++.|. .+.|+.-.||.+.++|.++|++. .
T Consensus 532 l~~f~~ia~~~~~alg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l 611 (974)
T PTZ00398 532 LDTFKVCSELENEALGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHL 611 (974)
T ss_pred HHHHHHHHHccccccceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHH
Confidence 3333444444443 5899999999999999988887542 47899999999999999999985 1
Q ss_pred ----C---eEEEcCCcccccCCC----CcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 341 ----D---GAMVARGDLGAELPI----EEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 341 ----D---GImIaRGDLg~elg~----e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
. -||+|..|=+.+-|. ..+..+|.++.+.|+++|+.+-.|.|
T Consensus 612 ~~~~~~~qeVMlGYSDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhG 664 (974)
T PTZ00398 612 KTVDNGIQEIMIGYSDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHG 664 (974)
T ss_pred hhccCCeEEEEEecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecC
Confidence 1 799999999999997 36889999999999999998754443
No 43
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=96.08 E-value=0.021 Score=64.60 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=80.8
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcC--------CCceEEEecCChhhhhcHHHHHhh--c--------------CeEE
Q 016564 289 KVDFYAVSFVKDAQVVHELKNYLKSCG--------ADIHVIVKIESADSIPNLHSIITA--S--------------DGAM 344 (387)
Q Consensus 289 gvD~I~lSfV~sa~dV~~l~~~L~~~g--------~~i~IIAKIEt~~gv~NL~eIl~~--s--------------DGIm 344 (387)
.+-.+++||++++.||.++..++++.| ..+.|+.-.||.+.++|.++|++. . --||
T Consensus 486 ~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeVM 565 (911)
T PRK00009 486 AIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEVM 565 (911)
T ss_pred hhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEEE
Confidence 455799999999999999998888765 157899999999999999999986 1 1799
Q ss_pred EcCCcccccCCC----CcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 345 VARGDLGAELPI----EEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 345 IaRGDLg~elg~----e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
+|..|=+.+-|. ..+..+|+++.+.|+++|+++-.|.|
T Consensus 566 lGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhG 607 (911)
T PRK00009 566 LGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHG 607 (911)
T ss_pred eecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecC
Confidence 999999999997 36889999999999999998754544
No 44
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=95.87 E-value=0.019 Score=64.80 Aligned_cols=110 Identities=18% Similarity=0.098 Sum_probs=80.2
Q ss_pred CCCCCCcccHHHHHhhHh----cCCC---EEEEcCCCCHHHHHHHHHHHH--------hcCC--CceEEEecCChhhhhc
Q 016564 270 TLPSITEKDWDDIKFGVD----NKVD---FYAVSFVKDAQVVHELKNYLK--------SCGA--DIHVIVKIESADSIPN 332 (387)
Q Consensus 270 ~lp~LTe~D~~dI~~a~~----~gvD---~I~lSfV~sa~dV~~l~~~L~--------~~g~--~i~IIAKIEt~~gv~N 332 (387)
..|.+.+-....|-.|.. .|.+ -|++|+|.+.++++.+++.+. +.|. +++|-.+||+|.|.--
T Consensus 674 ~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ 753 (879)
T PRK09279 674 TYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALT 753 (879)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHh
Confidence 345566666555554432 3543 499999999999999988653 2232 4789999999999999
Q ss_pred HHHHHhhcCeEEEcCCcccccC-CCC----------------------------cHHHHHHHHHHHHHH--CCCCccc
Q 016564 333 LHSIITASDGAMVARGDLGAEL-PIE----------------------------EVPLLQVVFISDIRA--MPRMSSS 379 (387)
Q Consensus 333 L~eIl~~sDGImIaRGDLg~el-g~e----------------------------~v~~~Qk~II~~c~a--aGKp~g~ 379 (387)
+++|++.+|.+-||-.||.--+ |+. -|..+.+..+++|++ .|+++|+
T Consensus 754 ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgI 831 (879)
T PRK09279 754 ADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGI 831 (879)
T ss_pred HHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9999999999999998875321 221 244555788888988 7888774
No 45
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=94.18 E-value=0.09 Score=58.46 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=88.9
Q ss_pred ecCCcceeeCCCCCCCCCCCcccHHHHHhhHh----cCCCE---EEEcCCCCHHHHHHHHHHHHhcCC------CceEEE
Q 016564 256 LKSRRHLNVRGKSATLPSITEKDWDDIKFGVD----NKVDF---YAVSFVKDAQVVHELKNYLKSCGA------DIHVIV 322 (387)
Q Consensus 256 L~s~KgVn~p~~~l~lp~LTe~D~~dI~~a~~----~gvD~---I~lSfV~sa~dV~~l~~~L~~~g~------~i~IIA 322 (387)
|.+++..--|+ ......|.+..+-++.+.+ .|.|. +++|+++++.||.++.=++++.|- .+.|+.
T Consensus 447 L~s~RPL~p~~--~~~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvP 524 (910)
T COG2352 447 LSSRRPLLPPF--WQPSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVP 524 (910)
T ss_pred hcCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCcccccc
Confidence 34444444333 2223455555555554433 34443 689999999999999989998873 488999
Q ss_pred ecCChhhhhcHHHHHhh-----------cC-----eEEEcCCcccccCCC----CcHHHHHHHHHHHHHHCCCCc
Q 016564 323 KIESADSIPNLHSIITA-----------SD-----GAMVARGDLGAELPI----EEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 323 KIEt~~gv~NL~eIl~~-----------sD-----GImIaRGDLg~elg~----e~v~~~Qk~II~~c~aaGKp~ 377 (387)
--||.+.++|.+.|+.. .+ -||+|-.|=.-+=|+ ..+..+|+.+++.|+++|+-.
T Consensus 525 LFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~L 599 (910)
T COG2352 525 LFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVEL 599 (910)
T ss_pred ccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceE
Confidence 99999999999999984 11 689998888888776 357889999999999999864
No 46
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=93.17 E-value=0.17 Score=56.65 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=68.1
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhcCC--------CceEEEecCChhhhhcHHHHHhhc----------------CeEEEcC
Q 016564 292 FYAVSFVKDAQVVHELKNYLKSCGA--------DIHVIVKIESADSIPNLHSIITAS----------------DGAMVAR 347 (387)
Q Consensus 292 ~I~lSfV~sa~dV~~l~~~L~~~g~--------~i~IIAKIEt~~gv~NL~eIl~~s----------------DGImIaR 347 (387)
-+++|+++++.||.++--+.++.|- .+.|+.-.||.+.++|.++|++.. --||+|-
T Consensus 366 ~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMlGY 445 (794)
T PF00311_consen 366 RYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVMLGY 445 (794)
T ss_dssp EEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEEEC
T ss_pred HheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEecc
Confidence 5799999999999999888777653 378999999999999999999851 2799999
Q ss_pred CcccccCCC----CcHHHHHHHHHHHHHHCCCCc
Q 016564 348 GDLGAELPI----EEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 348 GDLg~elg~----e~v~~~Qk~II~~c~aaGKp~ 377 (387)
.|=+-+-|. ..+..+|+.+.+.|+++|+.+
T Consensus 446 SDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l 479 (794)
T PF00311_consen 446 SDSNKDGGYLAANWALYKAQEALVAVARKHGVKL 479 (794)
T ss_dssp CCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EE
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 998888886 368999999999999999876
No 47
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=92.27 E-value=0.19 Score=53.28 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHH----------------hcC-----CCceEEEecCChhhhhcHHHHHhh----c--C
Q 016564 289 KVDFYAVSFVKDAQVVHELKNYLK----------------SCG-----ADIHVIVKIESADSIPNLHSIITA----S--D 341 (387)
Q Consensus 289 gvD~I~lSfV~sa~dV~~l~~~L~----------------~~g-----~~i~IIAKIEt~~gv~NL~eIl~~----s--D 341 (387)
.+-.|++||+.|++++..+.+++. +.+ ..+.||.-||+..++-|.++|+.. . +
T Consensus 120 pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~~ 199 (491)
T PF14010_consen 120 PIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGRD 199 (491)
T ss_dssp S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT--
T ss_pred chheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcCC
Confidence 566899999999999988866542 222 358999999999999999999985 2 2
Q ss_pred ----eEEEcCCcccccCCCC----cHHHHHHHHHHHHHHCCCCccccccc
Q 016564 342 ----GAMVARGDLGAELPIE----EVPLLQVVFISDIRAMPRMSSSIKAF 383 (387)
Q Consensus 342 ----GImIaRGDLg~elg~e----~v~~~Qk~II~~c~aaGKp~g~id~~ 383 (387)
-||+||.|=++..|.- -+..+-.++-+...+.|.|+.-|-|+
T Consensus 200 ~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIiG~ 249 (491)
T PF14010_consen 200 PEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPIIGV 249 (491)
T ss_dssp -SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-
T ss_pred chheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeeecc
Confidence 7999999999999973 23444566667778888887656553
No 48
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=91.18 E-value=0.53 Score=50.95 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=72.2
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhc-------C----CCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcc-----cccC
Q 016564 291 DFYAVSFVKDAQVVHELKNYLKSC-------G----ADIHVIVKIESADSIPNLHSIITASDGAMVARGDL-----GAEL 354 (387)
Q Consensus 291 D~I~lSfV~sa~dV~~l~~~L~~~-------g----~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDL-----g~el 354 (387)
=-|++|+|.+.+++++.++++... + ...+|=+++|-|.-+-.+++++...|-|=||-.|| +++-
T Consensus 560 L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvDR 639 (756)
T COG3605 560 LRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVDR 639 (756)
T ss_pred ceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHHhc
Confidence 369999999999999999888543 2 13568899999999999999999999999999996 4555
Q ss_pred CCCc-----------HHHHHHHHHHHHHHCCCCc
Q 016564 355 PIEE-----------VPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 355 g~e~-----------v~~~Qk~II~~c~aaGKp~ 377 (387)
|-.+ +-.+-|+|.++|..+|+|+
T Consensus 640 ~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pV 673 (756)
T COG3605 640 NNTRVADRYDSLHPAFLRALKQIVRAAERHGTPV 673 (756)
T ss_pred CCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCe
Confidence 5433 3445699999999999997
No 49
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=89.09 E-value=1.1 Score=42.16 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=49.0
Q ss_pred CCcccHHH-HHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEE----ecCChh-hhhcHHHHHhh-cCeEEEc
Q 016564 274 ITEKDWDD-IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV----KIESAD-SIPNLHSIITA-SDGAMVA 346 (387)
Q Consensus 274 LTe~D~~d-I~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIA----KIEt~~-gv~NL~eIl~~-sDGImIa 346 (387)
++.+..+. .+.+.+.|+|||.++|..+.+.++++.+ .. .+++++ ++.|.+ .++|+.+.++. ++|+.+|
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~---~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTKYTGDAESFKEVVE---GC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHh---cC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 45555444 5568889999999998775555544443 22 234433 233332 57889999888 8999999
Q ss_pred CCccccc
Q 016564 347 RGDLGAE 353 (387)
Q Consensus 347 RGDLg~e 353 (387)
|.=+..+
T Consensus 215 ~~i~~~~ 221 (235)
T cd00958 215 RNIFQRP 221 (235)
T ss_pred hhhhcCC
Confidence 8766444
No 50
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=88.53 E-value=13 Score=35.92 Aligned_cols=66 Identities=17% Similarity=0.346 Sum_probs=44.2
Q ss_pred HHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEE--ecC--C-hhhhhcHHHHHhh-cCeEEEcCCcccc
Q 016564 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV--KIE--S-ADSIPNLHSIITA-SDGAMVARGDLGA 352 (387)
Q Consensus 282 I~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIA--KIE--t-~~gv~NL~eIl~~-sDGImIaRGDLg~ 352 (387)
.+.+.+.|+|||..||.. ++..++++.... .++|++ =|= | .++++|+++++++ ++|+.++|.=+..
T Consensus 162 ~~~a~~~GADyikt~~~~---~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 162 ARLGAELGADIVKTPYTG---DIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHHCCCEEeccCCC---CHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 366778999999999875 444555554422 344443 232 2 4468899999988 8899988765543
No 51
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=85.16 E-value=5.7 Score=43.12 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=68.7
Q ss_pred HHHHHhhHhcCCCEE--EEcCCCCHHHHHHHHHHHHhcCCCceEEEecCC--hhhhhcHHHHHhhcCeEEEcCCccccc-
Q 016564 279 WDDIKFGVDNKVDFY--AVSFVKDAQVVHELKNYLKSCGADIHVIVKIES--ADSIPNLHSIITASDGAMVARGDLGAE- 353 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I--~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt--~~gv~NL~eIl~~sDGImIaRGDLg~e- 353 (387)
.+.|....+.|+|.| ++|-.+.++.+..+++.|...|.+++++|-|-= ..|+.. ++.+|.|=|-||.++--
T Consensus 48 v~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a----~~~vdkiRINPGNi~~~~ 123 (606)
T PRK00694 48 VRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHV----ADFVDKVRINPGNYVDKR 123 (606)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHH----HHhcCceEECCcccCCcc
Confidence 444566677899985 556667777778888888888889999999833 333322 23489999999999761
Q ss_pred -------C-------CCCcHHHHHHHHHHHHHHCCCCc
Q 016564 354 -------L-------PIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 354 -------l-------g~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+ .++++..--+.++.+|+++|+|+
T Consensus 124 k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~I 161 (606)
T PRK00694 124 NMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAM 161 (606)
T ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCE
Confidence 1 22345556689999999999995
No 52
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=84.82 E-value=2 Score=44.05 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=44.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHH
Q 016564 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEY 159 (387)
Q Consensus 108 r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~ 159 (387)
.+..+-+.+||..++.|....|+++|+|++=|..+||..+...++++.+|+.
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~ 146 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKK 146 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHh
Confidence 4667788899998899999999999999999999999999888888888753
No 53
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=84.59 E-value=5.1 Score=43.67 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=67.9
Q ss_pred HHHHHhhHhcCCCEEE--EcCCCCHHHHHHHHHHHHhcCCCceEEEecC--ChhhhhcHHHHHhhcCeEEEcCCcccccC
Q 016564 279 WDDIKFGVDNKVDFYA--VSFVKDAQVVHELKNYLKSCGADIHVIVKIE--SADSIPNLHSIITASDGAMVARGDLGAEL 354 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~--lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIE--t~~gv~NL~eIl~~sDGImIaRGDLg~el 354 (387)
.+.|....+.|+|.|- +|-.+.++.+..+++.+...|.+++++|-|- -..|+. -++.+|.|=|-||.++-.-
T Consensus 44 v~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~----a~~~v~kiRINPGN~~~~~ 119 (611)
T PRK02048 44 VAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADV----AAQYAEKVRINPGNYVDPG 119 (611)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHH----HHHhhCCEEECCCcCCCcc
Confidence 4445666778999854 5556677777777777777888999999984 333332 2334899999999998741
Q ss_pred ---------------CCCcHHHHHHHHHHHHHHCCCCc
Q 016564 355 ---------------PIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 355 ---------------g~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
.++++..--+.++.+|+++|+|+
T Consensus 120 k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~i 157 (611)
T PRK02048 120 RTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAI 157 (611)
T ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCE
Confidence 12244455578999999999995
No 54
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=84.57 E-value=3.5 Score=42.21 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=63.6
Q ss_pred HHHHHhhHhcCCCEE--EEcCCCCHHHHHHHHHHHHhcCCCceEEEec--CChhhhhcHHHHHhhcCeEEEcCCcccccC
Q 016564 279 WDDIKFGVDNKVDFY--AVSFVKDAQVVHELKNYLKSCGADIHVIVKI--ESADSIPNLHSIITASDGAMVARGDLGAEL 354 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I--~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKI--Et~~gv~NL~eIl~~sDGImIaRGDLg~el 354 (387)
.+.|....+.|+|.| ++|-.++++.+.++++.|.+.|.+++++|-| .-..|+.. ++.+|.|=|-||.++-++
T Consensus 34 v~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a----~~~v~kiRINPGNi~~~~ 109 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEA----IEAVDKIRINPGNIVDEF 109 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHH----HHC-SEEEE-TTTSS---
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHH----HHHhCeEEECCCcccccc
Confidence 444566677899985 5666677778888888888889999999998 55555544 334899999999996332
Q ss_pred --CCCcHHHHHHHHHHHHHHCCCCc
Q 016564 355 --PIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 355 --g~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+...+..--+.++++|+++|+|.
T Consensus 110 ~~~~g~~~~~~~~vv~~ake~~ipI 134 (359)
T PF04551_consen 110 QEELGSIREKVKEVVEAAKERGIPI 134 (359)
T ss_dssp -SS-SS-HHHHHHHHHHHHHHT-EE
T ss_pred cccccchHHHHHHHHHHHHHCCCCE
Confidence 22345777789999999999994
No 55
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.05 E-value=3.1 Score=42.80 Aligned_cols=68 Identities=22% Similarity=0.263 Sum_probs=48.2
Q ss_pred cHHHHHhhHhcCCCEEEEcC-------CCCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhcHHHHHhhcCeEEEcCCc
Q 016564 278 DWDDIKFGVDNKVDFYAVSF-------VKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGD 349 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSf-------V~sa~dV~~l~~~L~~~g~~i~IIA-KIEt~~gv~NL~eIl~~sDGImIaRGD 349 (387)
..+.++.+.+.|+|+|.+.. ..+..+...+.+++++. ++.||+ .|-|.+....+.+ .=+|+||+|+|-
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~ 218 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGP 218 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCC
Confidence 45667778899999999954 22222445566666653 577887 8888887766654 359999999885
No 56
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=82.40 E-value=14 Score=37.12 Aligned_cols=98 Identities=19% Similarity=0.260 Sum_probs=59.4
Q ss_pred cccHHHHHhhHhcCCCEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhcHHHHHhh-cCeEEEc--CCcc
Q 016564 276 EKDWDDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITA-SDGAMVA--RGDL 350 (387)
Q Consensus 276 e~D~~dI~~a~~~gvD~I~lSfV~-sa~dV~~l~~~L~~~g~~i~IIA-KIEt~~gv~NL~eIl~~-sDGImIa--RGDL 350 (387)
+.+.+.++.+++.|+|+|.+++.. +.+.+.++.+.+++...++.|++ .+.|++....+ +++ +|+|.++ +|--
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l---~~aGaD~I~vg~g~G~~ 169 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDL---IDAGADGVKVGIGPGSI 169 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHH---HhcCCCEEEECCCCCcC
Confidence 566788888999999999987642 22344444445555555677776 67776665444 344 9999984 3321
Q ss_pred ccc-----CCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 351 GAE-----LPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 351 g~e-----lg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
... .+... ..+-..+.++++..++|+
T Consensus 170 ~~t~~~~g~g~p~-~~~i~~v~~~~~~~~vpV 200 (325)
T cd00381 170 CTTRIVTGVGVPQ-ATAVADVAAAARDYGVPV 200 (325)
T ss_pred cccceeCCCCCCH-HHHHHHHHHHHhhcCCcE
Confidence 110 12121 223356667777778886
No 57
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.61 E-value=8.7 Score=38.27 Aligned_cols=68 Identities=4% Similarity=0.185 Sum_probs=52.1
Q ss_pred CcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh-cCeEEEcC
Q 016564 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 275 Te~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~-sDGImIaR 347 (387)
+-...+.+..+++.|+|+|.+-.. ++++++++...+++.+.++.+.|- | -.+|+.+++++ +|+|-++.
T Consensus 202 Ev~tleea~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~~~~i~leAsGGI----t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 202 ETETLEQVQEALEYGADIIMLDNM-PVDLMQQAVQLIRQQNPRVKIEASGNI----TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred ECCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhcCCCeEEEEECCC----CHHHHHHHHHcCCCEEEEch
Confidence 335677788899999999999976 788999988887665566655443 4 26788888887 89998865
No 58
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=80.10 E-value=15 Score=40.95 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=75.4
Q ss_pred EecCCcceeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEE--EcCCCCHHHHHHHHHHHHhcCCCceEEEecC--Chhhh
Q 016564 255 ELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYA--VSFVKDAQVVHELKNYLKSCGADIHVIVKIE--SADSI 330 (387)
Q Consensus 255 ~L~s~KgVn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~--lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIE--t~~gv 330 (387)
.++..-.|.+..-...-..=++.-.+.|....+.|+|+|- +|-.+.++.+..+++.|.+.|.+++++|-|- -..|+
T Consensus 89 ~iGG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al 168 (733)
T PLN02925 89 ALGSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVAL 168 (733)
T ss_pred eECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHH
Confidence 4455555555322211111122334445566778999854 5556677777777887877888999999983 33344
Q ss_pred hcHHHHHhhcCeEEEcCCcccccCC-C--------------CcHHHHHHHHHHHHHHCCCCc
Q 016564 331 PNLHSIITASDGAMVARGDLGAELP-I--------------EEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 331 ~NL~eIl~~sDGImIaRGDLg~elg-~--------------e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+-++.+|.|=|-||.++-.-. + +++...-..++.+|+++|+|+
T Consensus 169 ----~a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~i 226 (733)
T PLN02925 169 ----RVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAM 226 (733)
T ss_pred ----HHHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCE
Confidence 334458999999999887621 1 122333357999999999995
No 59
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=78.71 E-value=4.1 Score=41.62 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=44.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHHh--CCceeEeecCCCCHHHHHHHHHHHHHH
Q 016564 110 TKIVCTIGPSTNTREMIWKLAEA--GMNVARLNMSHGDHASHQKVIDLVKEY 159 (387)
Q Consensus 110 TKII~TIGPss~~~e~i~~Li~a--Gm~v~RiN~SHg~~e~~~~~I~~iR~~ 159 (387)
-.+.+++|-...+.|.+++|+++ |+|+.=|..|||..+...++|+.||+.
T Consensus 97 ~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~ 148 (346)
T PRK05096 97 KHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREA 148 (346)
T ss_pred ceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHh
Confidence 34566888888899999999994 999999999999999999999999863
No 60
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=78.25 E-value=4.3 Score=40.84 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=39.9
Q ss_pred eEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHH
Q 016564 111 KIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEY 159 (387)
Q Consensus 111 KII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~ 159 (387)
-+-+.+|+.....+.++.++++|++++=+|++||+.+.+.++|+.+|+.
T Consensus 84 ~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 84 LVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred eEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3445566654567899999999999999999999998888888888753
No 61
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=78.22 E-value=4.4 Score=41.30 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=43.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhC--CceeEeecCCCCHHHHHHHHHHHHH
Q 016564 110 TKIVCTIGPSTNTREMIWKLAEAG--MNVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 110 TKII~TIGPss~~~e~i~~Li~aG--m~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
-.+.+++|-...+.|.++.|+++| .|+.=|..|||..+...++|+.+|+
T Consensus 96 ~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 96 QNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred ceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 345668898888999999999996 9999999999999999999999986
No 62
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=77.41 E-value=9.5 Score=30.91 Aligned_cols=57 Identities=21% Similarity=0.446 Sum_probs=41.4
Q ss_pred CccEEEeccC-CcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEE-------ECcEecCCcceee
Q 016564 206 SAECVSVNYD-DFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV-------DGGELKSRRHLNV 264 (387)
Q Consensus 206 ~~~~i~v~~~-~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~-------~gG~L~s~KgVn~ 264 (387)
+...+.+..+ ..+..+.+|+.|-+|. ++|+|.++.++.+...+. +=+.++.+..||+
T Consensus 18 ~~~~~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~~~~G~~VNl 82 (85)
T PF00677_consen 18 DSQRLRIEIPDKILSDLKIGGSIAVNG--VCLTVTDINEDWFEVDLIPETLRRTTLGNLKVGDRVNL 82 (85)
T ss_dssp SEEEEEEEESTGGGGTG-TTSEEEETT--EEEEEEEEETTEEEEEEEHHHHHCSSGGG--TTSEEEE
T ss_pred CCEEEEEEcCHHHHhhCccCcEEEECC--eeeEEEEecCCEEEEechHHHhhhchhccCCCCCEEEE
Confidence 3445556666 7788999999999997 999999999999888765 3355555666665
No 63
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=76.96 E-value=5.4 Score=44.61 Aligned_cols=86 Identities=19% Similarity=0.158 Sum_probs=67.2
Q ss_pred EEEEcCCCCHHHHHHHHHHHH---hcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCccccc-CCC-----------
Q 016564 292 FYAVSFVKDAQVVHELKNYLK---SCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAE-LPI----------- 356 (387)
Q Consensus 292 ~I~lSfV~sa~dV~~l~~~L~---~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~e-lg~----------- 356 (387)
-+++||+++......+. ... ..+.+.++..+||.|.++-..+||++..|++=+|.+||.-- +|+
T Consensus 597 ~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~~ 675 (740)
T COG0574 597 EIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDERD 675 (740)
T ss_pred EEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccccc
Confidence 58899999999888877 443 11123889999999999999999999999999999997532 232
Q ss_pred CcHHHHHHHHHHHHHHCCCCcc
Q 016564 357 EEVPLLQVVFISDIRAMPRMSS 378 (387)
Q Consensus 357 e~v~~~Qk~II~~c~aaGKp~g 378 (387)
+.+-.+-+..+..|+.+++.+|
T Consensus 676 ~~v~~li~~a~~~~~~~~~~~~ 697 (740)
T COG0574 676 PAVLKLIIIAIKAADSGGLLVG 697 (740)
T ss_pred ccHHHHHHHHHhcccccCcEEE
Confidence 3466667788888888887776
No 64
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=76.58 E-value=4.6 Score=42.37 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=40.5
Q ss_pred eEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHH
Q 016564 111 KIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 111 KII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
.+=+.+|....+.+..+.|+++|++++-++++||+...+.+.|+.+|+
T Consensus 214 ~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 214 IVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 344567776677899999999999999999999988888888888775
No 65
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=75.70 E-value=10 Score=40.90 Aligned_cols=87 Identities=10% Similarity=0.141 Sum_probs=59.5
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHh-------cCCCceEEEecCChhhhhcHHHHHhhc-C---eEEEcC----------
Q 016564 289 KVDFYAVSFVKDAQVVHELKNYLKS-------CGADIHVIVKIESADSIPNLHSIITAS-D---GAMVAR---------- 347 (387)
Q Consensus 289 gvD~I~lSfV~sa~dV~~l~~~L~~-------~g~~i~IIAKIEt~~gv~NL~eIl~~s-D---GImIaR---------- 347 (387)
+-=|+-+|+.+++++++--.+.+.. .-+.+++-..|||..|.-+++||+-+. | |+=.||
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 4468999999999999776654432 235699999999999999999999862 2 443344
Q ss_pred ------------CcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 348 ------------GDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 348 ------------GDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
..++++-++ +..+.+..++.|++.|..+
T Consensus 283 ~~~~~~~vlPdR~~v~m~~pf--m~aY~~llv~tch~Rga~a 322 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQPF--MRAYEDLLVRTCHRRGAHA 322 (526)
T ss_dssp TCCGCCBB---GGGGGCGSHH--HHHHHHHHHHHHHHTT-HH
T ss_pred hhhCCCccccccccccccCHH--HHHHHHHHHHHHhhcCCcc
Confidence 333333332 5667789999999999765
No 66
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.65 E-value=13 Score=36.81 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=50.5
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcC--CCceEEEecCChhh--hhcHHHHHhh-cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCG--ADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g--~~i~IIAKIEt~~g--v~NL~eIl~~-sDGImIaR 347 (387)
..+....++++|+|.|.+=.. ++++++++.+++.+.+ .++ +||---| ++|+.++++. +|.|.+|.
T Consensus 191 ~leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERV----KIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCE----EEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 566788899999999999988 8999999999887766 343 3554444 4578888887 79888754
No 67
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=75.39 E-value=15 Score=32.58 Aligned_cols=91 Identities=14% Similarity=-0.027 Sum_probs=52.9
Q ss_pred HHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC-CceEEEecCCh-------hhhhcHHHHHhh-cCeEEEcCC-
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA-DIHVIVKIESA-------DSIPNLHSIITA-SDGAMVARG- 348 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~-~i~IIAKIEt~-------~gv~NL~eIl~~-sDGImIaRG- 348 (387)
.+.++++++.|+|+|.+.. +-++.+++. .++ ++.+++++=+. +.++..++..+. +|++++...
T Consensus 16 ~~~~~~~~~~gv~gi~~~g----~~i~~~~~~---~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 16 AKLCDEAIEYGFAAVCVNP----GYVRLAADA---LAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred HHHHHHHHHhCCcEEEECH----HHHHHHHHH---hCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH
Confidence 3445678889999999986 444444443 344 68899998554 466666666555 899988421
Q ss_pred cccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 349 DLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 349 DLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
....+-..+.+...-+.+.+.| ..+.|+
T Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~-~~~~pv 116 (201)
T cd00945 89 GSLKEGDWEEVLEEIAAVVEAA-DGGLPL 116 (201)
T ss_pred HHHhCCCHHHHHHHHHHHHHHh-cCCceE
Confidence 1111000223333334555555 457776
No 68
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.35 E-value=14 Score=35.32 Aligned_cols=63 Identities=10% Similarity=-0.033 Sum_probs=51.6
Q ss_pred HHHhhHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEE
Q 016564 281 DIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMV 345 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSf--V~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImI 345 (387)
-++.+.+.|+|+|.++- ++..++..++.+.+++.|-...+...=+|+ ++.+..+++.+|++++
T Consensus 93 ~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~--~e~l~~~~~~~~~~l~ 157 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP--DLLIHRLSKLSPLFIY 157 (244)
T ss_pred HHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCEEE
Confidence 37778899999999985 566788888989998888887777777775 5678999999998874
No 69
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=73.56 E-value=13 Score=36.39 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=48.5
Q ss_pred HhcCCCEEEEcCCC-----CHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcC-----CcccccCC
Q 016564 286 VDNKVDFYAVSFVK-----DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVAR-----GDLGAELP 355 (387)
Q Consensus 286 ~~~gvD~I~lSfV~-----sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaR-----GDLg~elg 355 (387)
-..++|+|++|--. +.+++.++|+.+ + ++|+ +=|=--.+|+.++++.+||++||. |+....+.
T Consensus 169 ~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~---~--~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD 241 (254)
T PF03437_consen 169 ERGGADAVIVTGKATGEPPDPEKLKRVREAV---P--VPVL--VGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVD 241 (254)
T ss_pred HhcCCCEEEECCcccCCCCCHHHHHHHHhcC---C--CCEE--EecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCC
Confidence 35799999999887 445555555443 2 5555 555556789999999999999985 55555555
Q ss_pred CCcHHHHH
Q 016564 356 IEEVPLLQ 363 (387)
Q Consensus 356 ~e~v~~~Q 363 (387)
.+++..+.
T Consensus 242 ~~Rv~~fm 249 (254)
T PF03437_consen 242 PERVRRFM 249 (254)
T ss_pred HHHHHHHH
Confidence 55554433
No 70
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=72.23 E-value=6.5 Score=39.88 Aligned_cols=44 Identities=20% Similarity=0.459 Sum_probs=37.4
Q ss_pred ecCCCCCCHHHHHHHHHhCC--ceeEeecCCCCHHHHHHHHHHHHH
Q 016564 115 TIGPSTNTREMIWKLAEAGM--NVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 115 TIGPss~~~e~i~~Li~aGm--~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
.+|....+.+.+.+|+++|+ |+.=|..+||..+..+++|+.+|+
T Consensus 91 ~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 91 SVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 44554566799999999966 999999999999999999998885
No 71
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=71.33 E-value=7.3 Score=41.72 Aligned_cols=50 Identities=28% Similarity=0.443 Sum_probs=42.5
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHH
Q 016564 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 109 ~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
+-..=+.+|+.....|..+.|+++|+|+.=+.++||......++|+.+|+
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34455578887778999999999999999999999988887788888886
No 72
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=71.09 E-value=16 Score=33.19 Aligned_cols=130 Identities=12% Similarity=0.186 Sum_probs=73.4
Q ss_pred eeCCCCCccccccccccccCccccccccccccCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHH
Q 016564 70 VPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASH 149 (387)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~ 149 (387)
+|++++.-.+|+++|++|...+ ++..+.+-.| -+||+..+.
T Consensus 6 ~~lT~eg~~~L~~EL~~L~~~r-------------------------------~~i~~~i~~A--------r~~GDlsEN 46 (158)
T PRK05892 6 KGLAPAARDHLEAELARLRARR-------------------------------DRLAVEVNDR--------GMIGDHGDQ 46 (158)
T ss_pred CccCHHHHHHHHHHHHHHHHHh-------------------------------HHHHHHHHHH--------HhCCCcchh
Confidence 5788888888888888886422 3344444444 345533222
Q ss_pred H----------HHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCCCCeEecCCCEEEEEecCCC-C-----CccEEEec
Q 016564 150 Q----------KVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTSGQEFTFTIQRGV-G-----SAECVSVN 213 (387)
Q Consensus 150 ~----------~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~~~i~Lk~G~~v~lt~~~~~-g-----~~~~i~v~ 213 (387)
. .+-..|+++...+..- .|. +....+++.|..- .+....|++.++++-... + +...|++.
T Consensus 47 aey~aak~~q~~~e~RI~~L~~~L~~A--~ii-~~~~~~V~~Gs~V-tl~~~~g~~~~~~IVg~~e~d~~~~~~~~IS~~ 122 (158)
T PRK05892 47 AEAIQRADELARLDDRINELDRRLRTG--PTP-WSGSETLPGGTEV-TLRFPDGEVETMHVISVVEETPVGREAETLTAD 122 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhC--EEe-cCCCCEEEcCcEE-EEEECCCCEEEEEEeCchhcCcccccCCEEccC
Confidence 1 1222355555544321 222 6666788887641 122245677666654211 1 13355555
Q ss_pred cC--CcccccCcCCEEEEe--CCeEEEEEEEEe
Q 016564 214 YD--DFVNDVEVGDMLLVD--GGMMSLLVKSKT 242 (387)
Q Consensus 214 ~~--~l~~~v~~Gd~IliD--DG~I~l~V~~v~ 242 (387)
.| .-+-.-++||.|.+. +|...++|.++.
T Consensus 123 SPlG~ALlGk~vGD~v~v~~p~g~~~~eI~~I~ 155 (158)
T PRK05892 123 SPLGQALAGHQAGDTVTYSTPQGPAQVELLAVK 155 (158)
T ss_pred CHHHHHHhCCCCCCEEEEEcCCCcEEEEEEEEE
Confidence 44 123356899999885 678888888765
No 73
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=70.94 E-value=6.7 Score=40.92 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=42.6
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHH
Q 016564 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 109 ~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
+-..-+.+|+.-.+.+.++.|+++|++++=|..+||..+...++++.+|+
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 44567778887667799999999999999999999998888888888875
No 74
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=69.90 E-value=66 Score=32.98 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=62.2
Q ss_pred HHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHH
Q 016564 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVP 360 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~ 360 (387)
.|+...+.|+|.|-+. |.+.++.+.+++.-+ +.+++++|-|-=- --..+.++.+-+|.+=|-||.+|- .
T Consensus 39 QI~~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIHFd-~~lAl~a~~~g~dkiRINPGNig~-------~ 107 (346)
T TIGR00612 39 QIRALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIHFD-YRLAALAMAKGVAKVRINPGNIGF-------R 107 (346)
T ss_pred HHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeCCC-cHHHHHHHHhccCeEEECCCCCCC-------H
Confidence 3455667899998776 446777777766544 5578999998421 112345555568999999999877 4
Q ss_pred HHHHHHHHHHHHCCCCc
Q 016564 361 LLQVVFISDIRAMPRMS 377 (387)
Q Consensus 361 ~~Qk~II~~c~aaGKp~ 377 (387)
.--+.++++|+++|+|.
T Consensus 108 e~v~~vv~~ak~~~ipI 124 (346)
T TIGR00612 108 ERVRDVVEKARDHGKAM 124 (346)
T ss_pred HHHHHHHHHHHHCCCCE
Confidence 55678999999999995
No 75
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=69.78 E-value=6.2 Score=42.11 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=38.5
Q ss_pred EecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHH
Q 016564 114 CTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 114 ~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
+.+|..-.+.+.++.|+++|++++=|+++||+.....++|+.+|+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 467776666899999999999999999999988887777887775
No 76
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=69.12 E-value=1.5e+02 Score=30.83 Aligned_cols=192 Identities=20% Similarity=0.200 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCCCCCeEecCCCEEEEEecCCCCCccEEEe--ccCCcccccCcCCEEE
Q 016564 151 KVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPITLTSGQEFTFTIQRGVGSAECVSV--NYDDFVNDVEVGDMLL 228 (387)
Q Consensus 151 ~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l~~~i~Lk~G~~v~lt~~~~~g~~~~i~v--~~~~l~~~v~~Gd~Il 228 (387)
++...|+.+-+.. -..+.|-.++.+-+.+. .| -++|+..+....-.|+.. ++..+--.++.|++|.
T Consensus 10 el~~~ik~~le~~-~~~v~v~gEis~~~~~~----------sG-H~Yf~Lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~ 77 (438)
T PRK00286 10 ELNRYVKSLLERD-LGQVWVRGEISNFTRHS----------SG-HWYFTLKDEIAQIRCVMFKGSARRLKFKPEEGMKVL 77 (438)
T ss_pred HHHHHHHHHHHhh-CCcEEEEEEeCCCeeCC----------CC-eEEEEEEcCCcEEEEEEEcChhhcCCCCCCCCCEEE
Confidence 3444444443332 23578877777766542 12 345665443222223222 2345555678999987
Q ss_pred Ee--------CCeEEEEEEEEeCCeEEEEEEECcEec----------CCcceeeCCCCCCCCCCCcccHHHHHhhHhcCC
Q 016564 229 VD--------GGMMSLLVKSKTEDSVKCEVVDGGELK----------SRRHLNVRGKSATLPSITEKDWDDIKFGVDNKV 290 (387)
Q Consensus 229 iD--------DG~I~l~V~~v~~d~v~c~V~~gG~L~----------s~KgVn~p~~~l~lp~LTe~D~~dI~~a~~~gv 290 (387)
+. .|.++|.|.+++...+ |.|. ..+|.-=|+...++|.+..
T Consensus 78 v~g~~~~y~~~g~~ql~v~~i~~~g~-------G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~-------------- 136 (438)
T PRK00286 78 VRGKVSLYEPRGDYQLIVEEIEPAGI-------GALAAAFEQLKEKLAAEGLFDPERKKPLPFFPK-------------- 136 (438)
T ss_pred EEEEEEEECCCCCEEEEEEEeeeCCc-------cHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCC--------------
Confidence 64 5677777776654331 2221 1234444444555555322
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh--------cCeEEEcCCcccccCCCCcHHHH
Q 016564 291 DFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--------SDGAMVARGDLGAELPIEEVPLL 362 (387)
Q Consensus 291 D~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~--------sDGImIaRGDLg~elg~e~v~~~ 362 (387)
-|++=--.+..-++.+...+......+.+..-==+.+|-....+|+++ .|.|+|+||==+ +|++...
T Consensus 137 -~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS----~eDL~~F 211 (438)
T PRK00286 137 -RIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS----LEDLWAF 211 (438)
T ss_pred -EEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC----HHHhhcc
Confidence 233333345555666655555444322222111222333333344332 389999998321 1222222
Q ss_pred -HHHHHHHHHHCCCCcccccc
Q 016564 363 -QVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 363 -Qk~II~~c~aaGKp~g~id~ 382 (387)
-..++++.-+...|+ |-|
T Consensus 212 n~e~v~~ai~~~~~Pv--is~ 230 (438)
T PRK00286 212 NDEAVARAIAASRIPV--ISA 230 (438)
T ss_pred CcHHHHHHHHcCCCCE--EEe
Confidence 345666666667776 544
No 77
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=69.07 E-value=43 Score=35.83 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=61.5
Q ss_pred CcccHHHHHhhHhcCCCEEEEcCC--CCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhcHHHHHhh-cCeEEEc--CC
Q 016564 275 TEKDWDDIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITA-SDGAMVA--RG 348 (387)
Q Consensus 275 Te~D~~dI~~a~~~gvD~I~lSfV--~sa~dV~~l~~~L~~~g~~i~IIA-KIEt~~gv~NL~eIl~~-sDGImIa--RG 348 (387)
++.+.+.++..++.|+|+|.+... ++...++.++. +++...++.|+| -+-|++....+ +++ +|+|.+| +|
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~-ik~~~~~~~v~aG~V~t~~~a~~~---~~aGad~I~vg~g~G 314 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKK-LKSNYPHVDIIAGNVVTADQAKNL---IDAGADGLRIGMGSG 314 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHH-HHhhCCCceEEECCcCCHHHHHHH---HHcCCCEEEECCcCC
Confidence 445678888889999999998764 44543444443 333334678888 56666665444 445 8999864 55
Q ss_pred cc-----cccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 349 DL-----GAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 349 DL-----g~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
=. -...|...+ .+-..+.+.|++.|.|+
T Consensus 315 s~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~v 347 (495)
T PTZ00314 315 SICITQEVCAVGRPQA-SAVYHVARYARERGVPC 347 (495)
T ss_pred cccccchhccCCCChH-HHHHHHHHHHhhcCCeE
Confidence 32 222333322 23456778888899987
No 78
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=68.34 E-value=10 Score=38.47 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=42.6
Q ss_pred eEEEecCCCCCCHHHHHHHHHhC--CceeEeecCCCCHHHHHHHHHHHHH
Q 016564 111 KIVCTIGPSTNTREMIWKLAEAG--MNVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 111 KII~TIGPss~~~e~i~~Li~aG--m~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
-..+++|-...+.|.+..|+++| .++.=+..|||......++++.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 46777888878889999999999 6999999999999988888888885
No 79
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.75 E-value=27 Score=34.59 Aligned_cols=67 Identities=9% Similarity=0.155 Sum_probs=47.1
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaR 347 (387)
..+....++++|+|+|.+-.. ++++++++.+++.....++.+.|- ----.+|+.++++. +|.|.+|.
T Consensus 191 tleea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieAs--GgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEAS--GNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEE--CCCCHHHHHHHHHcCCCEEEeCh
Confidence 466778889999999999887 888888888776543345444432 11134677777777 89998864
No 80
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=67.55 E-value=28 Score=34.25 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=47.2
Q ss_pred cccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh-cCeEEEcC
Q 016564 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 276 e~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~-sDGImIaR 347 (387)
-...+.+..+++.|+|+|.+..+ +++++.++.+.+.....+++++|- | -.+|+.+++++ +|+|.++.
T Consensus 190 v~t~eea~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~AsGGI----~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 190 VDSLEEALAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAAAGGI----NIENAAAYAAAGADILVTSA 259 (272)
T ss_pred cCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEEECCC----CHHHHHHHHHcCCcEEEECh
Confidence 34456777788999999999876 557777777766543345555443 3 23888999888 89997753
No 81
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=67.06 E-value=19 Score=37.12 Aligned_cols=94 Identities=9% Similarity=0.018 Sum_probs=59.1
Q ss_pred HHHHHhhHhcCCCEEEEcCCC------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEcCC
Q 016564 279 WDDIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARG 348 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~------sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIaRG 348 (387)
.+|.+.+.+.|+|+|.+|.-- .+..+..|.+.....+.++.||+-= ||.+-.+|+++ +|++||||.
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dG----GIr~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDS----GVRRGQHVFKALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeC----CcCCHHHHHHHHHcCCCEEEEcHH
Confidence 678888999999999998632 2334555555544445567777753 44555555444 899999998
Q ss_pred cccc--cCCC---CcH-HHHHHHHHHHHHHCCCC
Q 016564 349 DLGA--ELPI---EEV-PLLQVVFISDIRAMPRM 376 (387)
Q Consensus 349 DLg~--elg~---e~v-~~~Qk~II~~c~aaGKp 376 (387)
=|-. .-|- +++ ..++.++-......|..
T Consensus 315 ~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~ 348 (367)
T TIGR02708 315 VIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQ 348 (367)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5543 2232 332 34556666666666654
No 82
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=66.29 E-value=15 Score=33.65 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=47.3
Q ss_pred HHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhcHHHHHhh-cCeEEEcC
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~g--v~NL~eIl~~-sDGImIaR 347 (387)
.+.+..+++.|+|+|.+=.. ++++++++.+.+.+.+.++. ||---| .+|+.++++. .|.|.+|.
T Consensus 90 ~ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~v~----ie~SGGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPRVK----IEASGGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTTSE----EEEESSSSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCcEE----EEEECCCCHHHHHHHHhcCCCEEEcCh
Confidence 45577789999999999988 78999999998887777744 443333 4688888887 59988863
No 83
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=66.02 E-value=20 Score=33.77 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=42.4
Q ss_pred EecCCCEEEEEecC--CCCC---ccEEEeccCCcc--cccCcCCEEEE--eCCeEEEEEEEEeCCeEE
Q 016564 189 TLTSGQEFTFTIQR--GVGS---AECVSVNYDDFV--NDVEVGDMLLV--DGGMMSLLVKSKTEDSVK 247 (387)
Q Consensus 189 ~Lk~G~~v~lt~~~--~~g~---~~~i~v~~~~l~--~~v~~Gd~Ili--DDG~I~l~V~~v~~d~v~ 247 (387)
-++.|+++++++.. .+|. .....++-..|. ..+++|++++. ++|.+.++|++++++.|+
T Consensus 51 G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~ 118 (196)
T PRK10737 51 GHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVV 118 (196)
T ss_pred CCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEE
Confidence 36789999999864 3332 234555555553 35899999988 478899999999988764
No 84
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=65.60 E-value=45 Score=32.16 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=57.5
Q ss_pred HHHHHhhHhcCCCEEEEcCC------CCHHHHHHH-HHHHHhcCCCceEEEecCC---hhhhhcHHHHHhh-cCeEEEcC
Q 016564 279 WDDIKFGVDNKVDFYAVSFV------KDAQVVHEL-KNYLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV------~sa~dV~~l-~~~L~~~g~~i~IIAKIEt---~~gv~NL~eIl~~-sDGImIaR 347 (387)
.+.+++.++.|+|+|++.-- -+.++=.++ +...+..++++.|++-+=+ .++++......+. +|++|+.+
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 44567888899999886533 233443333 3344444567888888743 3344444444333 79999977
Q ss_pred CcccccCCCCcHHHHHHHHHHHHHHCCCCccccccc
Q 016564 348 GDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAF 383 (387)
Q Consensus 348 GDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~ 383 (387)
-.... .+-+.+...-+.|.+ +.+.|+.+.+-|
T Consensus 101 P~y~~-~~~~~~~~~~~~ia~---~~~~pi~iYn~P 132 (281)
T cd00408 101 PYYNK-PSQEGIVAHFKAVAD---ASDLPVILYNIP 132 (281)
T ss_pred CcCCC-CCHHHHHHHHHHHHh---cCCCCEEEEECc
Confidence 65433 232344444444444 467887544433
No 85
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.06 E-value=27 Score=34.64 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=48.8
Q ss_pred CcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh-cCeEEEcC
Q 016564 275 TEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 275 Te~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~-sDGImIaR 347 (387)
+-++.+.+..+++.|+|+|.+... ++++++++.+++. .++++.|- | -.+|+.+++++ +|+|-+|.
T Consensus 195 Ev~tleea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~---~~i~leAsGGI----t~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 195 EVESLDELRQALAAGADIVMLDEL-SLDDMREAVRLTA---GRAKLEASGGI----NESTLRVIAETGVDYISIGA 262 (277)
T ss_pred EeCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC---CCCcEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 345677888899999999999865 8888888877652 34554443 3 25788999888 89998864
No 86
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=64.87 E-value=30 Score=33.15 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=58.9
Q ss_pred CCCCCCcccHHHHHhhHhcCCCEEEE--cC---CCCHHHHHHH--------------HHHHHhcC--CCceEEEecC-Ch
Q 016564 270 TLPSITEKDWDDIKFGVDNKVDFYAV--SF---VKDAQVVHEL--------------KNYLKSCG--ADIHVIVKIE-SA 327 (387)
Q Consensus 270 ~lp~LTe~D~~dI~~a~~~gvD~I~l--Sf---V~sa~dV~~l--------------~~~L~~~g--~~i~IIAKIE-t~ 327 (387)
..|.+ +.-.+.++...+.|+|+|=+ || +-+...|... -+.+.+.. .+++++.+.. ++
T Consensus 9 G~P~~-~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 9 GDPDL-ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 34444 33455677777889999654 45 4444444432 12222221 1456666655 43
Q ss_pred ---hhhhcHHHHHh-h-cCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccc
Q 016564 328 ---DSIPNLHSIIT-A-SDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAF 383 (387)
Q Consensus 328 ---~gv~NL~eIl~-~-sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~ 383 (387)
.|++++-+-+. + +||+++- || ++| -.++++..|+++|...+.+-++
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~~i~P 138 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIFLVAP 138 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEEEeCC
Confidence 24455444333 3 7899984 55 332 4578999999999877554443
No 87
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=64.26 E-value=44 Score=32.60 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=56.1
Q ss_pred HHHHHhhHhcCCCEEEEc-------CCCCHHHHHHHHHHHHhcCCCceEEEecC---ChhhhhcHHHHHhh-cCeEEEcC
Q 016564 279 WDDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lS-------fV~sa~dV~~l~~~L~~~g~~i~IIAKIE---t~~gv~NL~eIl~~-sDGImIaR 347 (387)
.+.+++.++.|+|+|++. +....|-.+-++...+..++++.|++-+= |.++++......+. +|++|+.+
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 345678888999999984 22333333334444555566788888873 34444444444333 79999976
Q ss_pred CcccccCCCCcHHHHHHHHHHHHHHCCCCccccc
Q 016564 348 GDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIK 381 (387)
Q Consensus 348 GDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id 381 (387)
-... ...-+.+...-+.| |.+.+.|+.+.+
T Consensus 102 P~y~-~~~~~~i~~~~~~i---~~~~~~pi~lYn 131 (285)
T TIGR00674 102 PYYN-KPTQEGLYQHFKAI---AEEVDLPIILYN 131 (285)
T ss_pred CcCC-CCCHHHHHHHHHHH---HhcCCCCEEEEE
Confidence 5432 12223343334444 445577774444
No 88
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=64.19 E-value=12 Score=30.54 Aligned_cols=42 Identities=24% Similarity=0.416 Sum_probs=32.5
Q ss_pred CCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEec
Q 016564 215 DDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELK 257 (387)
Q Consensus 215 ~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~ 257 (387)
.++.+.+++||+|..-.| +.-+|.+++++.+..++..|..++
T Consensus 32 ~~m~~~L~~Gd~VvT~gG-i~G~V~~i~d~~v~vei~~g~~i~ 73 (84)
T TIGR00739 32 KKLIESLKKGDKVLTIGG-IIGTVTKIAENTIVIELNDNTEIT 73 (84)
T ss_pred HHHHHhCCCCCEEEECCC-eEEEEEEEeCCEEEEEECCCeEEE
Confidence 356788999999999887 456777888998888776665554
No 89
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=64.00 E-value=31 Score=35.27 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=50.8
Q ss_pred cccHHHHHhhHhcCCCEEEEcCC----------CCHHHHHHHHHHHHhcCCCceEEEe-------cCChhhhhcHHHHHh
Q 016564 276 EKDWDDIKFGVDNKVDFYAVSFV----------KDAQVVHELKNYLKSCGADIHVIVK-------IESADSIPNLHSIIT 338 (387)
Q Consensus 276 e~D~~dI~~a~~~gvD~I~lSfV----------~sa~dV~~l~~~L~~~g~~i~IIAK-------IEt~~gv~NL~eIl~ 338 (387)
..++++++.+++.|+|.|-+.+- -+.+++.+..+++.+.|..+.+... +|+ ..+-++.+.+
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~--~~~~l~~l~e 90 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELET--LERYLDRLVE 90 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhH--HHHHHHHHHH
Confidence 35788999999999999988844 5678899999999988876544332 222 2333444444
Q ss_pred h-cCeEEEcCCccc
Q 016564 339 A-SDGAMVARGDLG 351 (387)
Q Consensus 339 ~-sDGImIaRGDLg 351 (387)
. .|+|++ +|+|
T Consensus 91 ~GvDaviv--~Dpg 102 (347)
T COG0826 91 LGVDAVIV--ADPG 102 (347)
T ss_pred cCCCEEEE--cCHH
Confidence 4 799998 4554
No 90
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=62.94 E-value=21 Score=36.87 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=42.8
Q ss_pred cHHHHHhhHhcCCCEEEEc-------CCCCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhcHHHHHhhcCeEEEcCCc
Q 016564 278 DWDDIKFGVDNKVDFYAVS-------FVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGD 349 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lS-------fV~sa~dV~~l~~~L~~~g~~i~IIA-KIEt~~gv~NL~eIl~~sDGImIaRGD 349 (387)
..+..+.+++.|+|+|++. |+....+-..+.+++.+. +++||+ .|-|.+....+-+ .=+|+||+|||=
T Consensus 144 ~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg 219 (369)
T TIGR01304 144 AREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGG 219 (369)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCC
Confidence 3455677889999999985 222222333445555443 577886 6777666544443 349999998754
No 91
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=62.36 E-value=48 Score=32.41 Aligned_cols=99 Identities=10% Similarity=-0.057 Sum_probs=56.7
Q ss_pred HHHHHhhHhc-CCCEEEEcCC-------CCHHHHHHHHHHHHhcCCCceEEEecC---ChhhhhcHHHHHhh-cCeEEEc
Q 016564 279 WDDIKFGVDN-KVDFYAVSFV-------KDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVA 346 (387)
Q Consensus 279 ~~dI~~a~~~-gvD~I~lSfV-------~sa~dV~~l~~~L~~~g~~i~IIAKIE---t~~gv~NL~eIl~~-sDGImIa 346 (387)
.+.+++.++. |+++|++.=. ...|-.+-++...+..++++.||+-+- |.++++......+. +|++|+.
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~ 103 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAI 103 (288)
T ss_pred HHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3456788888 9999876432 233333333444445566788999874 45666665555554 8999986
Q ss_pred CCcccccCCCCcHHHHHHHHHHHHHHC-CCCccccc
Q 016564 347 RGDLGAELPIEEVPLLQVVFISDIRAM-PRMSSSIK 381 (387)
Q Consensus 347 RGDLg~elg~e~v~~~Qk~II~~c~aa-GKp~g~id 381 (387)
+-.... ..-+++...-+. .|.+. +.|+.+.+
T Consensus 104 ~P~y~~-~~~~~i~~~~~~---v~~a~~~lpi~iYn 135 (288)
T cd00954 104 TPFYYK-FSFEEIKDYYRE---IIAAAASLPMIIYH 135 (288)
T ss_pred CCCCCC-CCHHHHHHHHHH---HHHhcCCCCEEEEe
Confidence 544321 222333333344 44556 67764443
No 92
>PRK07695 transcriptional regulator TenI; Provisional
Probab=62.28 E-value=24 Score=32.53 Aligned_cols=36 Identities=0% Similarity=-0.065 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHH
Q 016564 123 REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 123 ~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
...+.+++++|++.+-|.--+.+.++..+.++.+++
T Consensus 17 ~~~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 17 LVAVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 334446899999999999999999988888877763
No 93
>PRK15452 putative protease; Provisional
Probab=61.78 E-value=27 Score=36.85 Aligned_cols=70 Identities=9% Similarity=0.088 Sum_probs=46.0
Q ss_pred ccHHHHHhhHhcCCCEEEEcCC----------CCHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhcHHHHHh----h-c
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFV----------KDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIIT----A-S 340 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV----------~sa~dV~~l~~~L~~~g~~i~IIAK-IEt~~gv~NL~eIl~----~-s 340 (387)
.+.+.++.|+++|+|.|-+..- -+.+++.+..++..+.|..+.+..- |=...-++.+.+.++ . .
T Consensus 11 g~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv 90 (443)
T PRK15452 11 GTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP 90 (443)
T ss_pred CCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC
Confidence 6788899999999999999332 2458888888888877765443211 222233444444443 3 7
Q ss_pred CeEEEc
Q 016564 341 DGAMVA 346 (387)
Q Consensus 341 DGImIa 346 (387)
|||+|+
T Consensus 91 DgvIV~ 96 (443)
T PRK15452 91 DALIMS 96 (443)
T ss_pred CEEEEc
Confidence 999995
No 94
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=61.73 E-value=68 Score=31.24 Aligned_cols=98 Identities=22% Similarity=0.277 Sum_probs=54.2
Q ss_pred hHhcCCCEEEEcCC--CCHHHHHH-HH---HHHHhcCCCceEEEec----CChhhhh--cHHHHHhh--cCeEEEcCCcc
Q 016564 285 GVDNKVDFYAVSFV--KDAQVVHE-LK---NYLKSCGADIHVIVKI----ESADSIP--NLHSIITA--SDGAMVARGDL 350 (387)
Q Consensus 285 a~~~gvD~I~lSfV--~sa~dV~~-l~---~~L~~~g~~i~IIAKI----Et~~gv~--NL~eIl~~--sDGImIaRGDL 350 (387)
+...|+|||=+-+- .+.++..+ ++ ..++....+..++|-. +...++. .+.+++.. .||+|+.-++=
T Consensus 76 ~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~K 155 (235)
T PF04476_consen 76 AAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADK 155 (235)
T ss_pred HHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccC
Confidence 34579999877775 45444433 22 2333344455555443 3222333 33455544 68999966553
Q ss_pred cccCCCCcH-HHHHHHHHHHHHHCCCCccccccc
Q 016564 351 GAELPIEEV-PLLQVVFISDIRAMPRMSSSIKAF 383 (387)
Q Consensus 351 g~elg~e~v-~~~Qk~II~~c~aaGKp~g~id~~ 383 (387)
.---=++.+ ...-...++.|+++|..+| +.|.
T Consensus 156 dg~~L~d~~~~~~L~~Fv~~ar~~gL~~a-LAGS 188 (235)
T PF04476_consen 156 DGGSLFDHLSEEELAEFVAQARAHGLMCA-LAGS 188 (235)
T ss_pred CCCchhhcCCHHHHHHHHHHHHHccchhh-cccc
Confidence 321111222 2234788999999999987 5554
No 95
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=61.62 E-value=16 Score=34.16 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHH
Q 016564 121 NTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNA 161 (387)
Q Consensus 121 ~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~ 161 (387)
+-.+.|.+|.++|++.|||.+-.-+.++..++++..|++-.
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~ 197 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALD 197 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999888644
No 96
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=61.47 E-value=35 Score=33.46 Aligned_cols=67 Identities=10% Similarity=0.208 Sum_probs=48.3
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhcHHHHHhh-cCeEEEc
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVA 346 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~g--v~NL~eIl~~-sDGImIa 346 (387)
++-+..+.+..++..|+|+|.+-.+ ++++++++.+++... .+++ ||=--| .+|+.+++++ +|+|-++
T Consensus 186 vev~t~eea~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~----i~asGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 186 VEVETLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVL----LEASGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred EecCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeE----EEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 3445567788888999999999887 678888877777543 3333 333333 4789999888 8999774
No 97
>PLN02741 riboflavin synthase
Probab=61.36 E-value=29 Score=32.66 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=43.1
Q ss_pred cEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEE-------ECcEecCCcceee
Q 016564 208 ECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV-------DGGELKSRRHLNV 264 (387)
Q Consensus 208 ~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~-------~gG~L~s~KgVn~ 264 (387)
..+.+..+.+.+.+++||.|-+|. ++|+|.+++++.+.+.+. +=|.++.+.-||+
T Consensus 23 ~~l~i~~~~~~~~l~~G~SIAvnG--vCLTV~~~~~~~f~vdvipETl~~T~L~~l~~G~~VNL 84 (194)
T PLN02741 23 FDLKIEASTVLDGVKLGDSIAVNG--TCLTVTEFDGDEFTVGLAPETLRKTSLGELKTGSLVNL 84 (194)
T ss_pred EEEEEEcchhhcccccCCEEEECc--EEEEEEEECCCEEEEEEEHHHhhhCccccCCCCCEEee
Confidence 345555556788999999999997 999999999998888775 3356666777776
No 98
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=60.86 E-value=38 Score=34.70 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=58.1
Q ss_pred HHHHHhhHhcCCCEEEEcCC------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEcCC
Q 016564 279 WDDIKFGVDNKVDFYAVSFV------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARG 348 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV------~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIaRG 348 (387)
.+|.+.+.+.|+|+|.+|.- ..+..+..+.++....+.++.||+- -||.+-.+|+++ +|++||||.
T Consensus 232 ~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr~ 307 (351)
T cd04737 232 PEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGRP 307 (351)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECHH
Confidence 36778899999999999742 2233444555544434456777765 345555555554 899999996
Q ss_pred cccc--cCC---CC-cHHHHHHHHHHHHHHCCCC
Q 016564 349 DLGA--ELP---IE-EVPLLQVVFISDIRAMPRM 376 (387)
Q Consensus 349 DLg~--elg---~e-~v~~~Qk~II~~c~aaGKp 376 (387)
=|-. .-| ++ -+..+++++...-...|..
T Consensus 308 ~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 308 VLYGLALGGAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5532 112 22 2345567777777777755
No 99
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=60.34 E-value=33 Score=32.46 Aligned_cols=56 Identities=25% Similarity=0.480 Sum_probs=44.6
Q ss_pred cEEEeccC-CcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEE-------ECcEecCCcceeeC
Q 016564 208 ECVSVNYD-DFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV-------DGGELKSRRHLNVR 265 (387)
Q Consensus 208 ~~i~v~~~-~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~-------~gG~L~s~KgVn~p 265 (387)
..+.+..+ .+.+.+++||.|-+|. ++|+|.++.++.+.+.+. +=|.++.+..||+-
T Consensus 22 ~~l~i~~~~~~~~~l~~G~SIAvnG--vCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLE 85 (200)
T TIGR00187 22 ISLVVNLADHMLDDLELGDSIAVNG--VCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIE 85 (200)
T ss_pred EEEEEEeChHHhcccccCCEEEECc--EEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEc
Confidence 34666666 6778999999999997 999999999998888774 33667777778873
No 100
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=60.27 E-value=1.1e+02 Score=30.53 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=40.5
Q ss_pred eEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhc
Q 016564 111 KIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQS 163 (387)
Q Consensus 111 KII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~ 163 (387)
.+..-+-- + +.+.+++.+++|.+..-+..||.+.++..+.-+.++++....
T Consensus 79 PV~lHLDH-~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~ 129 (293)
T PRK07315 79 PVAIHLDH-G-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAK 129 (293)
T ss_pred cEEEECCC-C-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 44555533 3 688999999999999999999999988888888888776644
No 101
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=59.94 E-value=42 Score=33.40 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=6.4
Q ss_pred CCCceEEEecCC
Q 016564 315 GADIHVIVKIES 326 (387)
Q Consensus 315 g~~i~IIAKIEt 326 (387)
+.++.|+|..|.
T Consensus 150 ~~~~~IiARTDa 161 (285)
T TIGR02320 150 TEDFMIIARVES 161 (285)
T ss_pred CCCeEEEEeccc
Confidence 345556666444
No 102
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=59.55 E-value=54 Score=32.43 Aligned_cols=98 Identities=10% Similarity=0.073 Sum_probs=54.7
Q ss_pred HHHHHhhHhcCCCEEEEcC-------CCCHHHHHHHHHHHHhcCCCceEEEecC--ChhhhhcHHHHHhh-cCeEEEcCC
Q 016564 279 WDDIKFGVDNKVDFYAVSF-------VKDAQVVHELKNYLKSCGADIHVIVKIE--SADSIPNLHSIITA-SDGAMVARG 348 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSf-------V~sa~dV~~l~~~L~~~g~~i~IIAKIE--t~~gv~NL~eIl~~-sDGImIaRG 348 (387)
.+.+++.++.|+|+|++.- ....|-.+-++...+..++++.||+-+- |.++++......+. +|++|+.+-
T Consensus 31 ~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP 110 (303)
T PRK03620 31 REHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPP 110 (303)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3456788899999998743 2333334444445555567788888773 23333333333333 789999776
Q ss_pred cccccCCCCcHHHHHHHHHHHHHHCCCCcccc
Q 016564 349 DLGAELPIEEVPLLQVVFISDIRAMPRMSSSI 380 (387)
Q Consensus 349 DLg~elg~e~v~~~Qk~II~~c~aaGKp~g~i 380 (387)
.... ..-+.+. ...-..|.+.+.|+.++
T Consensus 111 ~y~~-~~~~~i~---~~f~~va~~~~lpi~lY 138 (303)
T PRK03620 111 YLTE-APQEGLA---AHVEAVCKSTDLGVIVY 138 (303)
T ss_pred CCCC-CCHHHHH---HHHHHHHHhCCCCEEEE
Confidence 5431 1212233 33444455567776433
No 103
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=58.99 E-value=29 Score=33.77 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=43.1
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCC---CHHHHHHHHHHHHhcCCCceEEE--ecCChhhhhcHHHHHhh-cCeEEEcCCcc
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVK---DAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVARGDL 350 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~---sa~dV~~l~~~L~~~g~~i~IIA--KIEt~~gv~NL~eIl~~-sDGImIaRGDL 350 (387)
++.++++++.+.|+|+|.+..-. ..-|+....+++........+|| -|-| .+++.++... +||++||.+=+
T Consensus 168 h~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t---~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 168 HDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFT---PEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCC---HHHHHHHHHcCCCEEEECHHHc
Confidence 45567788889999999987410 11134444444443222334444 3333 3355556656 89999998765
Q ss_pred ccc
Q 016564 351 GAE 353 (387)
Q Consensus 351 g~e 353 (387)
..+
T Consensus 245 ~~~ 247 (260)
T PRK00278 245 RAD 247 (260)
T ss_pred CCC
Confidence 543
No 104
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=58.94 E-value=64 Score=33.11 Aligned_cols=106 Identities=9% Similarity=0.098 Sum_probs=63.6
Q ss_pred CCcccHHHHHhhHhcC--CCEEEEc--CCCCHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhcHHHHHhhcCeEEEc--
Q 016564 274 ITEKDWDDIKFGVDNK--VDFYAVS--FVKDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVA-- 346 (387)
Q Consensus 274 LTe~D~~dI~~a~~~g--vD~I~lS--fV~sa~dV~~l~~~L~~~g~~i~IIAK-IEt~~gv~NL~eIl~~sDGImIa-- 346 (387)
.++.|.+-++..++++ +|+|.+- .-.|...++.++ ++++.-.+..||+= |-|+++.++|-+ .=+|+|.||
T Consensus 104 ~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik-~ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiG 180 (343)
T TIGR01305 104 SSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVK-LVREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIG 180 (343)
T ss_pred cCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHH-HHHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 4667888888888874 9998764 444555555554 44444456778877 999999876543 349999986
Q ss_pred CCcccccCCCCcHHHHH----HHHHHHHHHCCCCccccccc
Q 016564 347 RGDLGAELPIEEVPLLQ----VVFISDIRAMPRMSSSIKAF 383 (387)
Q Consensus 347 RGDLg~elg~e~v~~~Q----k~II~~c~aaGKp~g~id~~ 383 (387)
+|--...=-..-+...| ..+.++++..++|+ +.||.
T Consensus 181 pGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~V-IaDGG 220 (343)
T TIGR01305 181 PGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHI-ISDGG 220 (343)
T ss_pred CCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeE-EEcCC
Confidence 44322221122222223 44555555556665 34543
No 105
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=58.81 E-value=94 Score=30.45 Aligned_cols=101 Identities=8% Similarity=0.009 Sum_probs=59.8
Q ss_pred HHHHHhhHh-cCCCEEEEcCC------CCHHHHHH-HHHHHHhcCCCceEEEecC---ChhhhhcHHHHHhh-cCeEEEc
Q 016564 279 WDDIKFGVD-NKVDFYAVSFV------KDAQVVHE-LKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVA 346 (387)
Q Consensus 279 ~~dI~~a~~-~gvD~I~lSfV------~sa~dV~~-l~~~L~~~g~~i~IIAKIE---t~~gv~NL~eIl~~-sDGImIa 346 (387)
.+.+++.++ .|+++|++.=- =|.++-.+ ++..++..++++.||+-+- |.++++......+. +|++|+.
T Consensus 27 ~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~ 106 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAV 106 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 455678899 99999887532 23333333 3444555567788999984 55666666555544 8999987
Q ss_pred CCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccc
Q 016564 347 RGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAF 383 (387)
Q Consensus 347 RGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~ 383 (387)
+..... ..- ..+.+..-..|.+.+.|+-+.+-|
T Consensus 107 ~P~y~~-~~~---~~l~~~f~~va~a~~lPv~iYn~P 139 (293)
T PRK04147 107 TPFYYP-FSF---EEICDYYREIIDSADNPMIVYNIP 139 (293)
T ss_pred CCcCCC-CCH---HHHHHHHHHHHHhCCCCEEEEeCc
Confidence 654311 111 223334444455667787555433
No 106
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=58.56 E-value=64 Score=31.27 Aligned_cols=99 Identities=16% Similarity=0.058 Sum_probs=57.1
Q ss_pred HHHHHhhHhcCCCEEEEcCC------CCHHHHHHHHH-HHHhcCCCceEEEecCC---hhhhhcHHHHHhh-cCeEEEcC
Q 016564 279 WDDIKFGVDNKVDFYAVSFV------KDAQVVHELKN-YLKSCGADIHVIVKIES---ADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV------~sa~dV~~l~~-~L~~~g~~i~IIAKIEt---~~gv~NL~eIl~~-sDGImIaR 347 (387)
.+.+++.++.|+++|++.-- -+.++-.++-+ ..+..++++.|++-+-. .++++......+. +|+||+.+
T Consensus 24 ~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~ 103 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVT 103 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcc
Confidence 45567889999999987622 23344444433 33444557888888853 4555555554444 79999986
Q ss_pred CcccccCCCCcHHHHHHHHHHHHHHCCCCccccc
Q 016564 348 GDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIK 381 (387)
Q Consensus 348 GDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id 381 (387)
-...- .+-+.+...-+.|.+ +.+.|+.+.+
T Consensus 104 P~~~~-~~~~~l~~~~~~ia~---~~~~pi~lYn 133 (284)
T cd00950 104 PYYNK-PSQEGLYAHFKAIAE---ATDLPVILYN 133 (284)
T ss_pred cccCC-CCHHHHHHHHHHHHh---cCCCCEEEEE
Confidence 64321 122334444444544 4577874443
No 107
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=58.32 E-value=31 Score=30.59 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHH
Q 016564 123 REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNA 161 (387)
Q Consensus 123 ~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~ 161 (387)
.+.+++++++|++.+-|..-.++...+.+.++.+++...
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~ 53 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALRELCR 53 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999888888888888888888876544
No 108
>PLN02417 dihydrodipicolinate synthase
Probab=58.09 E-value=59 Score=31.80 Aligned_cols=89 Identities=12% Similarity=0.039 Sum_probs=53.8
Q ss_pred HHHHHhhHhcCCCEEEEcCC------CCHHHHHHH-HHHHHhcCCCceEEEecC---ChhhhhcHHHHHhh-cCeEEEcC
Q 016564 279 WDDIKFGVDNKVDFYAVSFV------KDAQVVHEL-KNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV------~sa~dV~~l-~~~L~~~g~~i~IIAKIE---t~~gv~NL~eIl~~-sDGImIaR 347 (387)
.+.+++.++.|+++|++.=- -|.++-.++ +...+..++.+.|++-+= |.++++....-.+. +|++|+.+
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 104 (280)
T ss_pred HHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34567888999999987433 233333333 334455566788988874 56666666655544 89999987
Q ss_pred CcccccCCCCcHHHHHHHHHH
Q 016564 348 GDLGAELPIEEVPLLQVVFIS 368 (387)
Q Consensus 348 GDLg~elg~e~v~~~Qk~II~ 368 (387)
-.... .+-+.+...-+.|..
T Consensus 105 P~y~~-~~~~~i~~~f~~va~ 124 (280)
T PLN02417 105 PYYGK-TSQEGLIKHFETVLD 124 (280)
T ss_pred CccCC-CCHHHHHHHHHHHHh
Confidence 76432 222344444444444
No 109
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=57.97 E-value=17 Score=38.21 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=41.3
Q ss_pred EecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHH
Q 016564 114 CTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEY 159 (387)
Q Consensus 114 ~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~ 159 (387)
+.||-..++.+.+.-|.++|+|+.=|.-|.|+..+..++|+.||+.
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 4567667788999999999999999999999999999999999863
No 110
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=57.39 E-value=87 Score=33.65 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=59.0
Q ss_pred CcccHHHHHhhHhcCCCEEEEcCC--CCHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhcHHHHHhhcCeEEEc--CCc
Q 016564 275 TEKDWDDIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVA--RGD 349 (387)
Q Consensus 275 Te~D~~dI~~a~~~gvD~I~lSfV--~sa~dV~~l~~~L~~~g~~i~IIAK-IEt~~gv~NL~eIl~~sDGImIa--RGD 349 (387)
.+.+.+-++..++.|+|+|++--. .+...+..++ ++++...+..||+. |-|++.-.++.+ .=+|+|.++ +|=
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~-~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~ 322 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIK-YIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGS 322 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHH-HHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCc
Confidence 456788888999999999987554 3333223333 34443446778764 999988776655 349999886 442
Q ss_pred cccc-----CCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 350 LGAE-----LPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 350 Lg~e-----lg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
-+.. .|...+. .-..+-+.+++.++|+
T Consensus 323 ~~~t~~~~~~g~~~~~-~i~~~~~~~~~~~vpV 354 (505)
T PLN02274 323 ICTTQEVCAVGRGQAT-AVYKVASIAAQHGVPV 354 (505)
T ss_pred cccCccccccCCCccc-HHHHHHHHHHhcCCeE
Confidence 2111 1222211 2222455566677776
No 111
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=56.35 E-value=17 Score=38.60 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=45.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEe
Q 016564 110 TKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLD 173 (387)
Q Consensus 110 TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lD 173 (387)
..+=+-+|.+....+.++.|+++|+++.=|..+||.++...++++.||+. +. .+.|+.+
T Consensus 214 l~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~---~~--~~~vi~g 272 (475)
T TIGR01303 214 LRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRAL---DL--GVPIVAG 272 (475)
T ss_pred ceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHH---CC--CCeEEEe
Confidence 33444456666778999999999999999999999998888888888852 22 2566664
No 112
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=56.21 E-value=78 Score=33.78 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=66.7
Q ss_pred CCCcccHHHHHhhHhcCCCEEEEcCC--CCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhcHHHHHhhcCeEEE--cC
Q 016564 273 SITEKDWDDIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMV--AR 347 (387)
Q Consensus 273 ~LTe~D~~dI~~a~~~gvD~I~lSfV--~sa~dV~~l~~~L~~~g~~i~IIA-KIEt~~gv~NL~eIl~~sDGImI--aR 347 (387)
.+++.+.+.+...++.|+|.|++--. .+.. +.+.-+.+++...++.||| -|-|.++..++.+ +=+|+|=| |+
T Consensus 223 ~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~-~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~ 299 (479)
T PRK07807 223 GINGDVAAKARALLEAGVDVLVVDTAHGHQEK-MLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGP 299 (479)
T ss_pred ccChhHHHHHHHHHHhCCCEEEEeccCCccHH-HHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECccC
Confidence 45667778888888999999887433 3333 3333344555556789999 9999999988776 34898874 45
Q ss_pred CcccccCCCCcH--H--HHHHHHHHHHHHCCCCc
Q 016564 348 GDLGAELPIEEV--P--LLQVVFISDIRAMPRMS 377 (387)
Q Consensus 348 GDLg~elg~e~v--~--~~Qk~II~~c~aaGKp~ 377 (387)
|-...--+.-.+ | .+-.++.++|++.|+|+
T Consensus 300 gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~v 333 (479)
T PRK07807 300 GAMCTTRMMTGVGRPQFSAVLECAAAARELGAHV 333 (479)
T ss_pred CcccccccccCCchhHHHHHHHHHHHHHhcCCcE
Confidence 544444333222 2 22356666667778887
No 113
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=55.99 E-value=24 Score=37.35 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=69.0
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHhc---------C-----------C-CceEEEecCChhhhhcHHHHHhh----cC-
Q 016564 288 NKVDFYAVSFVKDAQVVHELKNYLKSC---------G-----------A-DIHVIVKIESADSIPNLHSIITA----SD- 341 (387)
Q Consensus 288 ~gvD~I~lSfV~sa~dV~~l~~~L~~~---------g-----------~-~i~IIAKIEt~~gv~NL~eIl~~----sD- 341 (387)
..+--|++|+..|++.+..+.+++... | . .|.+|..+|+.+++-+...|... .|
T Consensus 123 ~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~IeviPl~e~~~~ll~a~~i~~~y~~g~~~ 202 (488)
T COG1892 123 APIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLIEVIPLFEDRESLLKAALIVGEYAEGRDP 202 (488)
T ss_pred ccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHHhhhHhHhhHHHHHHHHHHHHHHHhcCCc
Confidence 356679999999999998887665311 1 1 24567778888888888777765 12
Q ss_pred ---eEEEcCCcccccCCCC----cHHHHHHHHHHHHHHCCCCccccccc
Q 016564 342 ---GAMVARGDLGAELPIE----EVPLLQVVFISDIRAMPRMSSSIKAF 383 (387)
Q Consensus 342 ---GImIaRGDLg~elg~e----~v~~~Qk~II~~c~aaGKp~g~id~~ 383 (387)
-|++||.|=++..|.- -+..+..++-+.-.+.|.+..-|-|+
T Consensus 203 e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i~PI~G~ 251 (488)
T COG1892 203 EYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPIYPILGV 251 (488)
T ss_pred hhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCcccceecC
Confidence 7999999999999973 23444456667777778887666654
No 114
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=55.85 E-value=46 Score=32.13 Aligned_cols=73 Identities=22% Similarity=0.152 Sum_probs=44.8
Q ss_pred HHHHhhHhcCCCEEEEcCCCCH---HHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh-cCeEEEcCCccccc
Q 016564 280 DDIKFGVDNKVDFYAVSFVKDA---QVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDGAMVARGDLGAE 353 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~sa---~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~-sDGImIaRGDLg~e 353 (387)
+..+.+.+.|+|+|.+---... .+.+.+++.-... .++.||+- |.|.+ ...+.+.+ +||||||||=|.-.
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGgI~s~e---da~e~l~~GAd~VmvgR~~l~~~ 227 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNSIDDIE---SAKEMLKAGADFVSVARAILKGN 227 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECCcCCHH---HHHHHHHhCCCeEEEcHhhccCC
Confidence 4445677899999988532221 3555565543322 23778875 55543 33444445 99999999988665
Q ss_pred CCC
Q 016564 354 LPI 356 (387)
Q Consensus 354 lg~ 356 (387)
+.+
T Consensus 228 ~~~ 230 (231)
T TIGR00736 228 VEF 230 (231)
T ss_pred cCc
Confidence 543
No 115
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=55.62 E-value=36 Score=32.62 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=39.6
Q ss_pred HHHHHhhHhcCCCEEEEcCCCC--HHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh-cCeEEEcCC
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKD--AQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDGAMVARG 348 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~s--a~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~-sDGImIaRG 348 (387)
.+..+.+.+.|+|+|.++--.. ..|...+++.- .++.||+- |.|.+-. .+.+.. +|+|||||+
T Consensus 155 ~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~eda---~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 155 EELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIESA---KEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHHHH---HHHHHcCCCEEEEcCC
Confidence 3444667789999987754332 23555555432 35777763 6665443 344444 999999999
No 116
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=55.52 E-value=57 Score=27.85 Aligned_cols=68 Identities=15% Similarity=0.058 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 303 dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
-++.+++.|.+.+....+.+--+.. .-++++++++-+|.|+.+-.+ ......+-+.|+++++|. |++
T Consensus 57 Ka~~~~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~--i~~ 123 (135)
T PF00899_consen 57 KAEAAKERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPF--IDA 123 (135)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EE--EEE
T ss_pred HHHHHHHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCE--EEE
Confidence 4556778888888887766644433 557888888888988876444 456677888999999998 665
Q ss_pred c
Q 016564 383 F 383 (387)
Q Consensus 383 ~ 383 (387)
.
T Consensus 124 ~ 124 (135)
T PF00899_consen 124 G 124 (135)
T ss_dssp E
T ss_pred E
Confidence 4
No 117
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=55.50 E-value=54 Score=31.63 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=55.4
Q ss_pred HHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCC
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI 356 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~ 356 (387)
...++...++|+|+|.+-+=.+..++..+-+++++.|....|..+-.|+ ++.++.++...|.|+| ++++-|+
T Consensus 72 ~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLv----MsV~PGf 143 (229)
T PRK09722 72 QDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITV----MTVDPGF 143 (229)
T ss_pred HHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEE----EEEcCCC
Confidence 3456666788999988865534456777778888889889999999995 5779999999998888 4455554
No 118
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=54.03 E-value=69 Score=29.45 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=50.7
Q ss_pred HHHHHhhHhcCCCEEEE-----cCCCC----HHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcCC
Q 016564 279 WDDIKFGVDNKVDFYAV-----SFVKD----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARG 348 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~l-----SfV~s----a~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaRG 348 (387)
.+.++.+.+.|+|+|-+ +|+.+ .+.++++++.. .....+-.++-. ..+.++.+.++ +||+.+--+
T Consensus 19 ~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 19 GEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVT---KLPLDVHLMVEN--PDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcC---CCcEEEEeeeCC--HHHHHHHHHHcCCCEEEEeec
Confidence 34567888899999999 88754 55555555433 112223344443 33345666555 688766322
Q ss_pred cccccCCCCcHHHHHHHHHHHHHHCCCCccccc
Q 016564 349 DLGAELPIEEVPLLQVVFISDIRAMPRMSSSIK 381 (387)
Q Consensus 349 DLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id 381 (387)
.. ......++.+++.|...|...
T Consensus 94 -------~~---~~~~~~~~~~~~~~~~~g~~~ 116 (220)
T PRK05581 94 -------AS---EHIHRLLQLIKSAGIKAGLVL 116 (220)
T ss_pred -------cc---hhHHHHHHHHHHcCCEEEEEE
Confidence 11 122445777888887766433
No 119
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=53.85 E-value=30 Score=36.68 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=41.1
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHH
Q 016564 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 109 ~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
+..+=+-+|+.-.+.+.++.|+++|++++-++.+||..+.+.+.++.+|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 44565667755466899999999999999999999998888888887775
No 120
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.82 E-value=67 Score=32.15 Aligned_cols=65 Identities=8% Similarity=0.052 Sum_probs=49.6
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhcHHHHHhh-cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~g--v~NL~eIl~~-sDGImIaR 347 (387)
..++...+++.|+|.|.+=... ++++++....+++.+.++ +||---| ++|+.+.++. +|.|.+|.
T Consensus 208 tl~ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 208 SLEQLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred CHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 4556777899999999999885 889988888776665554 3555544 4688898888 89888754
No 121
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=53.66 E-value=39 Score=33.97 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=39.5
Q ss_pred HHHHhhHhcCCCEEEEcCCCCH---------------HHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhhcCe
Q 016564 280 DDIKFGVDNKVDFYAVSFVKDA---------------QVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITASDG 342 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~sa---------------~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~sDG 342 (387)
+.++.+.+.|+|.|.+. .+++ -+...+++.- +.-.++.||+- |.|.+ .+.+.+.-+||
T Consensus 145 ~~~~~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk-~~~~~ipVi~NGdI~s~~---da~~~l~g~dg 219 (318)
T TIGR00742 145 DFVEIVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLK-KDFPHLTIEINGGIKNSE---QIKQHLSHVDG 219 (318)
T ss_pred HHHHHHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHH-HhCCCCcEEEECCcCCHH---HHHHHHhCCCE
Confidence 44566677899988764 3332 1333343322 22235777764 55544 34445556999
Q ss_pred EEEcCCccc
Q 016564 343 AMVARGDLG 351 (387)
Q Consensus 343 ImIaRGDLg 351 (387)
||||||=|+
T Consensus 220 VMigRgal~ 228 (318)
T TIGR00742 220 VMVGREAYE 228 (318)
T ss_pred EEECHHHHh
Confidence 999999876
No 122
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=53.48 E-value=64 Score=27.07 Aligned_cols=69 Identities=10% Similarity=0.062 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCcc
Q 016564 299 KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSS 378 (387)
Q Consensus 299 ~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g 378 (387)
.|.=-+..+++++++.|-+..|.+. ++..+++.+.-.|.|++++ .+.+..+++-+.|...|+|+-
T Consensus 12 SSs~la~km~~~a~~~gi~~~i~a~-----~~~e~~~~~~~~Dvill~P----------Qv~~~~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 12 TSGLLANALNKGAKERGVPLEAAAG-----AYGSHYDMIPDYDLVILAP----------QMASYYDELKKDTDRLGIKLV 76 (99)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEEe-----eHHHHHHhccCCCEEEEcC----------hHHHHHHHHHHHhhhcCCCEE
Confidence 3455567888999888877665543 4455666677789888874 577888999999999999998
Q ss_pred cccc
Q 016564 379 SIKA 382 (387)
Q Consensus 379 ~id~ 382 (387)
.||.
T Consensus 77 ~I~~ 80 (99)
T cd05565 77 TTTG 80 (99)
T ss_pred EeCH
Confidence 8874
No 123
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=52.78 E-value=31 Score=32.81 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=54.2
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHH--hhcCeEEEcCCccc
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSII--TASDGAMVARGDLG 351 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl--~~sDGImIaRGDLg 351 (387)
.+..=...++...+.|+|+|.+-+--+.+.+.+..+.+++.|..+.|-..-+| .++.+.+++ ...|.|++ ++
T Consensus 73 m~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~----m~ 146 (228)
T PTZ00170 73 MVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV----MT 146 (228)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHccchhhhHHh----hh
Confidence 33333445677788999999886664444377777778777766555555455 688899998 66888875 77
Q ss_pred ccCCCC
Q 016564 352 AELPIE 357 (387)
Q Consensus 352 ~elg~e 357 (387)
++-|..
T Consensus 147 v~pG~~ 152 (228)
T PTZ00170 147 VEPGFG 152 (228)
T ss_pred cccCCC
Confidence 776664
No 124
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=52.76 E-value=90 Score=30.04 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=54.7
Q ss_pred HHHHHhhHhcCCCEEEE---------------cCCCCHHHHHHHHHHHHhcCC--CceEEEecCCh--------hhhhcH
Q 016564 279 WDDIKFGVDNKVDFYAV---------------SFVKDAQVVHELKNYLKSCGA--DIHVIVKIESA--------DSIPNL 333 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~l---------------SfV~sa~dV~~l~~~L~~~g~--~i~IIAKIEt~--------~gv~NL 333 (387)
.+.++...+.|+++|.+ ..+...+.+..++........ ++.|+|..|+. ++++..
T Consensus 87 ~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra 166 (243)
T cd00377 87 ARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERA 166 (243)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHH
Confidence 34456667789999998 455555666666666655554 89999996664 344444
Q ss_pred HHHHhh-cCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 334 HSIITA-SDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 334 ~eIl~~-sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
..-.++ +|++|+-.-. -.+++-+.+++...|+
T Consensus 167 ~ay~~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl 199 (243)
T cd00377 167 KAYAEAGADGIFVEGLK------------DPEEIRAFAEAPDVPL 199 (243)
T ss_pred HHHHHcCCCEEEeCCCC------------CHHHHHHHHhcCCCCE
Confidence 444445 8999983222 1245555566666665
No 125
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=52.53 E-value=57 Score=32.08 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=45.2
Q ss_pred HHHHHhhHhcC-CCEEEEc------CCCCHHHHHHHH-HHHHhcCCCceEEEecC---ChhhhhcHHHHHhh-cCeEEEc
Q 016564 279 WDDIKFGVDNK-VDFYAVS------FVKDAQVVHELK-NYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVA 346 (387)
Q Consensus 279 ~~dI~~a~~~g-vD~I~lS------fV~sa~dV~~l~-~~L~~~g~~i~IIAKIE---t~~gv~NL~eIl~~-sDGImIa 346 (387)
.+.+++.++.| +|+|++. +.=+.++-.++- ...+..++++.|++-+- |.++++......+. +||+|+.
T Consensus 24 ~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~ 103 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV 103 (290)
T ss_pred HHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 44567888899 9998876 333555544443 34455566788888874 45555555554433 7999886
Q ss_pred CCc
Q 016564 347 RGD 349 (387)
Q Consensus 347 RGD 349 (387)
+-.
T Consensus 104 ~P~ 106 (290)
T TIGR00683 104 TPF 106 (290)
T ss_pred CCc
Confidence 543
No 126
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=52.27 E-value=11 Score=26.55 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=18.6
Q ss_pred CceeEeecC-CCCHHHHHHHHHHH
Q 016564 134 MNVARLNMS-HGDHASHQKVIDLV 156 (387)
Q Consensus 134 m~v~RiN~S-Hg~~e~~~~~I~~i 156 (387)
|.+.+++|| |++.++..++++.+
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~ 30 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQL 30 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHH
T ss_pred EEEEEEeecCCCCHHHHHHHHHhc
Confidence 678899998 88998888888776
No 127
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=52.20 E-value=20 Score=33.72 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=52.5
Q ss_pred HHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCC
Q 016564 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI 356 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~ 356 (387)
.++...+.|+|+|.+.+ ++.+++.++-+++++.|....|..+-+| .++.+++++...|.|++ ++++-|.
T Consensus 72 ~i~~~~~~g~~~i~~H~-E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~Vlv----MsV~PG~ 140 (201)
T PF00834_consen 72 YIEEFAEAGADYITFHA-EATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLV----MSVEPGF 140 (201)
T ss_dssp HHHHHHHHT-SEEEEEG-GGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEE----ESS-TTT
T ss_pred HHHHHHhcCCCEEEEcc-cchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEE----EEecCCC
Confidence 46667789999887765 4777888888899998988888888888 56779999999999988 4455554
No 128
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=52.18 E-value=2.3e+02 Score=29.35 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=60.2
Q ss_pred HHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEec--CChhhhhcHHHHHhhcCeEEEcCCcccccCCC
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKI--ESADSIPNLHSIITASDGAMVARGDLGAELPI 356 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKI--Et~~gv~NL~eIl~~sDGImIaRGDLg~elg~ 356 (387)
.+.|....+.|+|.|-+. |.+.++.+.++..-+.. +++++|-| .-..|+. .+-.-+|++=|-||.+
T Consensus 45 v~Qi~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIHFd~~lAl~---a~~~G~~~iRINPGNi------ 112 (360)
T PRK00366 45 VAQIKRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIHFDYRLALA---AAEAGADALRINPGNI------ 112 (360)
T ss_pred HHHHHHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecCCCHHHHHH---HHHhCCCEEEECCCCC------
Confidence 334455667899997776 34666666666654432 68899988 3344432 3323389999999988
Q ss_pred CcHHHHHHHHHHHHHHCCCCc
Q 016564 357 EEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 357 e~v~~~Qk~II~~c~aaGKp~ 377 (387)
.....--+.++++|+++|+|.
T Consensus 113 g~~~~~v~~vv~~ak~~~ipI 133 (360)
T PRK00366 113 GKRDERVREVVEAAKDYGIPI 133 (360)
T ss_pred CchHHHHHHHHHHHHHCCCCE
Confidence 344566789999999999994
No 129
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=52.15 E-value=55 Score=32.26 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=52.6
Q ss_pred HHHHHhhHhcCCCEEEEcCCC------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEcCC
Q 016564 279 WDDIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARG 348 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~------sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIaRG 348 (387)
.++.+.+.+.|+|+|.++--. ....+..+.+..+....++.||+- -|+.+-.+++++ +|+||+||.
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~----GGI~~~~d~~kal~lGAd~V~ig~~ 258 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLD----GGIRRGTDVLKALALGADAVLIGRP 258 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEe----CCCCCHHHHHHHHHcCCCEEEEcHH
Confidence 356788899999999996421 122333343333322335777765 344555555544 899999997
Q ss_pred cccccC--CCCcH----HHHHHHHHHHHHHCCC
Q 016564 349 DLGAEL--PIEEV----PLLQVVFISDIRAMPR 375 (387)
Q Consensus 349 DLg~el--g~e~v----~~~Qk~II~~c~aaGK 375 (387)
-|.... |.+.+ ..+++++-......|.
T Consensus 259 ~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~ 291 (299)
T cd02809 259 FLYGLAAGGEAGVAHVLEILRDELERAMALLGC 291 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 664322 33323 3334455555555554
No 130
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=52.10 E-value=87 Score=32.23 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=65.7
Q ss_pred CcccHHHHHhhHhcCCCEEEE--cCCCCHHHHHHHHHHHHhcCCCceEE-EecCChhhhhcHHHHHhhcCeEEEcCCccc
Q 016564 275 TEKDWDDIKFGVDNKVDFYAV--SFVKDAQVVHELKNYLKSCGADIHVI-VKIESADSIPNLHSIITASDGAMVARGDLG 351 (387)
Q Consensus 275 Te~D~~dI~~a~~~gvD~I~l--SfV~sa~dV~~l~~~L~~~g~~i~II-AKIEt~~gv~NL~eIl~~sDGImIaRGDLg 351 (387)
.+.+.+.++..+++|+|+|.+ +...+...+..++. +++...++.|| -.|-|.++.++|-+ .=+|+|-||=|==+
T Consensus 106 ~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~-ik~~~~~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGs 182 (352)
T PF00478_consen 106 RDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKK-IKKKFPDVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGS 182 (352)
T ss_dssp STCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHH-HHHHSTTSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSST
T ss_pred CHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHH-HHHhCCCceEEecccCCHHHHHHHHH--cCCCEEEEeccCCc
Confidence 446788888889999999888 68878877777765 44445566665 68999999977544 23999999754222
Q ss_pred ccC-------CCCcHHHHHHHHHHHHHHCCCCc
Q 016564 352 AEL-------PIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 352 ~el-------g~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+-. |.. -..+-.+..++|+.+++|+
T Consensus 183 iCtTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~i 214 (352)
T PF00478_consen 183 ICTTREVTGVGVP-QLTAVYECAEAARDYGVPI 214 (352)
T ss_dssp TBHHHHHHSBSCT-HHHHHHHHHHHHHCTTSEE
T ss_pred ccccccccccCCc-HHHHHHHHHHHhhhccCce
Confidence 211 222 2334467778888888887
No 131
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=51.94 E-value=52 Score=31.77 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCceeEeecCCC--------CHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeee
Q 016564 123 REMIWKLAEAGMNVARLNMSHG--------DHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVR 180 (387)
Q Consensus 123 ~e~i~~Li~aGm~v~RiN~SHg--------~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIR 180 (387)
.+..++|+++|+++.=+|+.-. ..+++.++...++.+.+.. .++|.+|+.-|++=
T Consensus 27 ~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~---~~piSIDT~~~~v~ 89 (258)
T cd00423 27 LEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP---DVPISVDTFNAEVA 89 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC---CCeEEEeCCcHHHH
Confidence 3567889999999999998655 4667777888888776532 36799999877643
No 132
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=51.45 E-value=1.4e+02 Score=26.10 Aligned_cols=44 Identities=30% Similarity=0.462 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHhCCceeEeecCCCCHHHHH---------HHHHHHHHHHH
Q 016564 118 PSTNTREMIWKLAEAGMNVARLNMSHGDHASHQ---------KVIDLVKEYNA 161 (387)
Q Consensus 118 Pss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~---------~~I~~iR~~~~ 161 (387)
+...+.+.++.|.++|.+.+.+++-|++.+.+. ++++.++.+.+
T Consensus 95 ~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (216)
T smart00729 95 PGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLRE 147 (216)
T ss_pred cccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 455689999999999999999999988877664 34555555543
No 133
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=51.44 E-value=1.1e+02 Score=25.43 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=38.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHH----------HHHHHHHHHHHHHH
Q 016564 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHA----------SHQKVIDLVKEYNA 161 (387)
Q Consensus 108 r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e----------~~~~~I~~iR~~~~ 161 (387)
...++..+..+...+.+.++.|.++|++.+++++...+++ .+.++++.++.+.+
T Consensus 75 ~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 138 (166)
T PF04055_consen 75 RGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKE 138 (166)
T ss_dssp TTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHH
T ss_pred cccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHH
Confidence 3445555444444459999999999999999999999887 23344455665544
No 134
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=51.42 E-value=72 Score=29.91 Aligned_cols=56 Identities=25% Similarity=0.456 Sum_probs=42.5
Q ss_pred cEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEE-------ECcEecCCcceeeC
Q 016564 208 ECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV-------DGGELKSRRHLNVR 265 (387)
Q Consensus 208 ~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~-------~gG~L~s~KgVn~p 265 (387)
..+.+..+..+..+++|+.|-+|. ++|+|.+++++.+...+. +=|.++.+.-||+-
T Consensus 22 ~~~~i~~~~~~~~l~~g~SIAvnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~l~~G~~VNLE 84 (194)
T PRK09289 22 LRLTIEAGKLLSDLKLGDSIAVNG--VCLTVTEIDGDSFTVDVSPETLRRTNLGDLKVGDRVNLE 84 (194)
T ss_pred EEEEEEcCccccccccCCEEEEcc--EEEEEEEEcCCEEEEEEEHHHhhhCchhhccCCCEEEEe
Confidence 345555565566699999999997 999999999988888775 23566677778863
No 135
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=51.08 E-value=1.3e+02 Score=29.05 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=57.7
Q ss_pred CCCCcccHH-HHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh----------hcHHHHHhh-
Q 016564 272 PSITEKDWD-DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI----------PNLHSIITA- 339 (387)
Q Consensus 272 p~LTe~D~~-dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv----------~NL~eIl~~- 339 (387)
|.-+..|.+ .++.+++.++|.|+++. --+...+..+ +.++.++.+|++.-++ ..+++.++.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 555777744 55778899999999984 3444333333 3457788888853333 124455544
Q ss_pred cCeEEEc--CCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 340 SDGAMVA--RGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 340 sDGImIa--RGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+|.+.+- -|++. .+++...-+++.+.|+++|.|+
T Consensus 107 ad~v~~~~~~g~~~----~~~~~~~~~~v~~~~~~~g~pl 142 (267)
T PRK07226 107 ADAVSVHVNVGSET----EAEMLEDLGEVAEECEEWGMPL 142 (267)
T ss_pred CCEEEEEEecCChh----HHHHHHHHHHHHHHHHHcCCcE
Confidence 5644331 12111 2345555678999999999997
No 136
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=50.94 E-value=18 Score=35.99 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=38.9
Q ss_pred cHHHHHhhHhcCCCEEEEcC------CCCHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh--cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSF------VKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA--SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSf------V~sa~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~--sDGImIaR 347 (387)
-.+.++...+.|+++|.+-- -+...|...++...... ++.||+- |.|.+- +.++++. +|||||||
T Consensus 140 ~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d---~~~~~~~tg~dgvMigR 214 (309)
T PF01207_consen 140 TIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPED---AERMLEQTGADGVMIGR 214 (309)
T ss_dssp HHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHH---HHHHCCCH-SSEEEESH
T ss_pred HHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHH---HHHHHHhcCCcEEEEch
Confidence 35566777889999998742 22245555555544332 3788876 555433 3334444 89999999
Q ss_pred Ccccc
Q 016564 348 GDLGA 352 (387)
Q Consensus 348 GDLg~ 352 (387)
|=|+.
T Consensus 215 gal~n 219 (309)
T PF01207_consen 215 GALGN 219 (309)
T ss_dssp HHCC-
T ss_pred hhhhc
Confidence 87654
No 137
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=50.69 E-value=51 Score=30.52 Aligned_cols=70 Identities=20% Similarity=0.154 Sum_probs=39.1
Q ss_pred HHHHHhhHhcCCCEEEEcCCC------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh--cCeEEEcCCcc
Q 016564 279 WDDIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVARGDL 350 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~------sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~--sDGImIaRGDL 350 (387)
.+.++...+.|+|+|.+.-.. ...++..++.+.+ ..++.|++ -+.....+.+.++++. +|+||+||+=|
T Consensus 141 ~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~--~~~ipvi~-~Ggi~~~~d~~~~l~~~gad~V~igr~~l 217 (231)
T cd02801 141 LELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE--AVSIPVIA-NGDIFSLEDALRCLEQTGVDGVMIGRGAL 217 (231)
T ss_pred HHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh--CCCCeEEE-eCCCCCHHHHHHHHHhcCCCEEEEcHHhH
Confidence 445566667899999764321 1123443433222 23466665 2333334455555554 89999999755
Q ss_pred c
Q 016564 351 G 351 (387)
Q Consensus 351 g 351 (387)
.
T Consensus 218 ~ 218 (231)
T cd02801 218 G 218 (231)
T ss_pred h
Confidence 4
No 138
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=50.54 E-value=50 Score=32.79 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=47.7
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhcHHHHHhh-cCeEEEc
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVA 346 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~g--v~NL~eIl~~-sDGImIa 346 (387)
..++.+.+++.|+|.|.+=.. +++++.++.+.+++.+.++. ||=.-| ++|+.+++.. .|.|.+|
T Consensus 197 tleea~ea~~~GaDiI~lDn~-~~e~l~~~v~~l~~~~~~~~----leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLDKF-TPQQLHHLHERLKFFDHIPT----LAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHhccCCCEE----EEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 566778889999999999985 89999999888865555532 444444 4578888777 7887764
No 139
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=50.37 E-value=49 Score=30.87 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=38.5
Q ss_pred HHHHHhhHhcCCCEEEEcC--------CCCHHHHHHHHHHHHhcCCCceEEE--ecCChhhhhcHHHHHhh-cCeEEEcC
Q 016564 279 WDDIKFGVDNKVDFYAVSF--------VKDAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSf--------V~sa~dV~~l~~~L~~~g~~i~IIA--KIEt~~gv~NL~eIl~~-sDGImIaR 347 (387)
.++++.+.+.|+|+|.+.. .....+...++++.+.. ++++++ -|-|+ +++.++++. +||+++|+
T Consensus 129 ~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~---~~~~~~l~~GadgV~iGs 203 (221)
T PRK01130 129 LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTP---EQAKKALELGAHAVVVGG 203 (221)
T ss_pred HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCH---HHHHHHHHCCCCEEEEch
Confidence 3456788899999997631 11223344444443322 355554 23333 566667666 89999997
Q ss_pred C
Q 016564 348 G 348 (387)
Q Consensus 348 G 348 (387)
.
T Consensus 204 a 204 (221)
T PRK01130 204 A 204 (221)
T ss_pred H
Confidence 5
No 140
>TIGR01345 malate_syn_G malate synthase G. This model describes the G isozyme of malate synthase. Isocitrate synthase and malate synthase form the glyoxylate shunt, which generates additional TCA cycle intermediates.
Probab=50.31 E-value=38 Score=37.70 Aligned_cols=96 Identities=9% Similarity=-0.036 Sum_probs=63.5
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHhc-------CCCceEEEecCChhhhhcHHHHHhhc-C---eEEEcCCcccc----
Q 016564 288 NKVDFYAVSFVKDAQVVHELKNYLKSC-------GADIHVIVKIESADSIPNLHSIITAS-D---GAMVARGDLGA---- 352 (387)
Q Consensus 288 ~gvD~I~lSfV~sa~dV~~l~~~L~~~-------g~~i~IIAKIEt~~gv~NL~eIl~~s-D---GImIaRGDLg~---- 352 (387)
.|.=||..|+.++++++.--.++.... ...+++-.+|||..+--|++||+.+. | ||=-||=|-.-
T Consensus 385 ~GsiY~ykPKmhgp~EaafwndlF~~~Ed~LGLp~gTIK~gVmdEerras~nL~EcI~elrdrv~fiNtGfwDytfseIh 464 (721)
T TIGR01345 385 KGSVYIVKPKMHGPEEVAFANKLFTRIEDMLGLARHTLKMGVMDEERRTSLNLRACIAQVRNRVAFINTGFLDRTGDEIH 464 (721)
T ss_pred CCCeeEEecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEEeccHhHhhHHHHHHHHHhheeecccCchhhhhhHHH
Confidence 356699999999999998766554322 24689999999999999999999862 3 22222222100
Q ss_pred ---cC----------CCCcHHHHHHHHHH---HHHHCCCCccccc-ccee
Q 016564 353 ---EL----------PIEEVPLLQVVFIS---DIRAMPRMSSSIK-AFYL 385 (387)
Q Consensus 353 ---el----------g~e~v~~~Qk~II~---~c~aaGKp~g~id-~~~~ 385 (387)
+- ...-+..+.+..+. .|...|+.. |- |+|.
T Consensus 465 t~~~ag~~vRk~~mm~~pwm~AYe~~nV~~gl~Ch~rG~aa--IGkGMwA 512 (721)
T TIGR01345 465 TSMEAGPMLRKNDMKSTPWIKAYERNNVLAGLFCGLRGKAQ--IGKGMWA 512 (721)
T ss_pred HHhhcCCccchhcccccHHHHHHHHHHhHHhHhcCCCCchh--cCCCccc
Confidence 00 01113334466676 899999987 76 7664
No 141
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=50.28 E-value=93 Score=30.33 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=56.1
Q ss_pred HHHHHhhHhcCCCEEEEcCC-------CCHHHHHHHHHHHHhcCCCceEEEecC---ChhhhhcHHHHHhh-cCeEEEcC
Q 016564 279 WDDIKFGVDNKVDFYAVSFV-------KDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV-------~sa~dV~~l~~~L~~~g~~i~IIAKIE---t~~gv~NL~eIl~~-sDGImIaR 347 (387)
.+.+++.++.|+++|++.-. ...|-.+-++...+...+++.|++-+= |.++++.+....++ +|++|+.+
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC
Confidence 34567888899999986432 223333333344444456678888773 45555555554444 79999976
Q ss_pred CcccccCCCCcHHHHHHHHHHHHHHCCCCccccc
Q 016564 348 GDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIK 381 (387)
Q Consensus 348 GDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id 381 (387)
-.... .+-+.+...-+.| |.+.+.|+.+.+
T Consensus 105 P~~~~-~~~~~i~~~~~~i---a~~~~~pv~lYn 134 (292)
T PRK03170 105 PYYNK-PTQEGLYQHFKAI---AEATDLPIILYN 134 (292)
T ss_pred CcCCC-CCHHHHHHHHHHH---HhcCCCCEEEEE
Confidence 65432 1223344333444 444567764444
No 142
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=50.04 E-value=1.7e+02 Score=30.83 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=62.6
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCC--CCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhcHHHHHhhcCeEEEc--CC
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVA--RG 348 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV--~sa~dV~~l~~~L~~~g~~i~IIA-KIEt~~gv~NL~eIl~~sDGImIa--RG 348 (387)
+++.+.+..+..++.|+|+|.+-.. .+..-++.++ .+.+.-.+..|++ -+-|+++..++-+ .=+|+|-+| +|
T Consensus 221 ~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~-~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G 297 (450)
T TIGR01302 221 TREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIK-EIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPG 297 (450)
T ss_pred CchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHH-HHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCC
Confidence 4566778888889999999998664 2333333333 3343334677777 7888888766655 248998865 55
Q ss_pred ccccc-----CCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 349 DLGAE-----LPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 349 DLg~e-----lg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
--... .|... ..+...+.+.|++.++|+
T Consensus 298 ~~~~t~~~~~~g~p~-~~~i~~~~~~~~~~~vpv 330 (450)
T TIGR01302 298 SICTTRIVAGVGVPQ-ITAVYDVAEYAAQSGIPV 330 (450)
T ss_pred cCCccceecCCCccH-HHHHHHHHHHHhhcCCeE
Confidence 22211 23222 234466777788889997
No 143
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=49.93 E-value=33 Score=33.50 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeeecC
Q 016564 123 REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGD 183 (387)
Q Consensus 123 ~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~ 183 (387)
.+..++|+++|.++.=+|+.-...+++.++...|+...+.. .++|++|+.-|++.---
T Consensus 28 ~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~---~~plsIDT~~~~v~eaa 85 (261)
T PRK07535 28 QKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV---DVPLCIDSPNPAAIEAG 85 (261)
T ss_pred HHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC---CCCEEEeCCCHHHHHHH
Confidence 45677889999999999998766677888888888776533 36799999988766433
No 144
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=49.68 E-value=55 Score=32.97 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=38.7
Q ss_pred HHHHhhHhcCCCEEEEcCCCCH---------------HHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhhcCe
Q 016564 280 DDIKFGVDNKVDFYAVSFVKDA---------------QVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITASDG 342 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~sa---------------~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~sDG 342 (387)
+.++.+.+.|+|+|.+. .++. -+...++++ .+...++.||+- |-|++- +.++++.+||
T Consensus 155 ~~~~~l~~aG~d~i~vh-~Rt~~~~g~~~~~~~~~~~~~~~~i~~v-~~~~~~iPVI~nGgI~s~ed---a~~~l~~aDg 229 (333)
T PRK11815 155 DFVDTVAEAGCDTFIVH-ARKAWLKGLSPKENREIPPLDYDRVYRL-KRDFPHLTIEINGGIKTLEE---AKEHLQHVDG 229 (333)
T ss_pred HHHHHHHHhCCCEEEEc-CCchhhcCCCccccccCCCcCHHHHHHH-HHhCCCCeEEEECCcCCHHH---HHHHHhcCCE
Confidence 34456677899999886 2221 123333322 222235677764 655543 3344455999
Q ss_pred EEEcCCccc
Q 016564 343 AMVARGDLG 351 (387)
Q Consensus 343 ImIaRGDLg 351 (387)
||||||=|+
T Consensus 230 VmIGRa~l~ 238 (333)
T PRK11815 230 VMIGRAAYH 238 (333)
T ss_pred EEEcHHHHh
Confidence 999998554
No 145
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.85 E-value=58 Score=32.29 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=47.1
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcC
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaR 347 (387)
++-++.+.++.+.+.|+|||.+.. -++++++++.+.+. ..+.+.|- =. --.+|+.+++++ +|+|-+|.
T Consensus 193 vsv~tleea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~---~~i~i~Ai-GG-It~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 193 VETETEEQVREAVAAGADIIMFDN-RTPDEIREFVKLVP---SAIVTEAS-GG-ITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EEeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHhcC---CCceEEEE-CC-CCHHHHHHHHHcCCCEEEECh
Confidence 455677888888999999999975 47788887776552 23332221 10 135788999888 89998864
No 146
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=48.60 E-value=84 Score=25.90 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 303 dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
-+..+++++++.|-+..+.+- ++.++++.+...|.|++++ .+.+.++++-+.+...|+|+-.|+.
T Consensus 19 l~~k~~~~~~~~gi~~~v~a~-----~~~~~~~~~~~~Dvill~p----------qi~~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAAG-----SYGAAGEKLDDADVVLLAP----------QVAYMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEEe-----cHHHHHhhcCCCCEEEECc----------hHHHHHHHHHHHhhhcCCCEEEeCh
Confidence 456778888877766544332 4555666666689888874 5778889999999999999877765
Q ss_pred c
Q 016564 383 F 383 (387)
Q Consensus 383 ~ 383 (387)
.
T Consensus 84 ~ 84 (95)
T TIGR00853 84 A 84 (95)
T ss_pred h
Confidence 3
No 147
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=48.57 E-value=28 Score=29.63 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=29.4
Q ss_pred CcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEec
Q 016564 216 DFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELK 257 (387)
Q Consensus 216 ~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~ 257 (387)
++.+.+++||+|..-.| |.-+|.+++++.+..++-.|..++
T Consensus 48 ~~~~~Lk~Gd~VvT~gG-i~G~Vv~i~~~~v~lei~~g~~i~ 88 (106)
T PRK05585 48 KMLSSLAKGDEVVTNGG-IIGKVTKVSEDFVIIELNDDTEIK 88 (106)
T ss_pred HHHHhcCCCCEEEECCC-eEEEEEEEeCCEEEEEECCCeEEE
Confidence 46678888888888877 446667777787777775554444
No 148
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.39 E-value=63 Score=32.35 Aligned_cols=63 Identities=6% Similarity=0.085 Sum_probs=48.0
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhcHHHHHhh-cCeEEEcC
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~g--v~NL~eIl~~-sDGImIaR 347 (387)
.+.+....+++.|+|.|.+=+. ++++++++.+.+.+ + ..||---| ++|+.+++.. .|.|.+|.
T Consensus 205 ~tleea~~a~~agaDiImLDnm-spe~l~~av~~~~~---~----~~leaSGGI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 205 ESLAAAEEAAAAGADIIMLDNM-SLEQIEQAITLIAG---R----SRIECSGNIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcC---c----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 4567788899999999999998 78899888887642 2 23554444 4688888887 89888764
No 149
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=48.35 E-value=29 Score=29.87 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=32.4
Q ss_pred CcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecC
Q 016564 216 DFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKS 258 (387)
Q Consensus 216 ~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s 258 (387)
++.+.+++||+|..-.|- .-+|.+++++.+..++..|..++=
T Consensus 34 ~m~~~Lk~GD~VvT~gGi-~G~V~~I~d~~v~leia~gv~i~~ 75 (109)
T PRK05886 34 DLHESLQPGDRVHTTSGL-QATIVGITDDTVDLEIAPGVVTTW 75 (109)
T ss_pred HHHHhcCCCCEEEECCCe-EEEEEEEeCCEEEEEECCCeEEEE
Confidence 467889999999999874 456777888888888766666653
No 150
>PRK15447 putative protease; Provisional
Probab=48.12 E-value=70 Score=31.74 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=49.0
Q ss_pred ccHHHHHhhH-hcCCCEEEEcCCC-------CHHHHHHHHHHHHhcCCCceE-EEec-CChhhhhcHHHHHhh-cCeEEE
Q 016564 277 KDWDDIKFGV-DNKVDFYAVSFVK-------DAQVVHELKNYLKSCGADIHV-IVKI-ESADSIPNLHSIITA-SDGAMV 345 (387)
Q Consensus 277 ~D~~dI~~a~-~~gvD~I~lSfV~-------sa~dV~~l~~~L~~~g~~i~I-IAKI-Et~~gv~NL~eIl~~-sDGImI 345 (387)
...+++-.++ +.|+|.|-+.... +.+++.++.+++.+.|..+.+ +..| -...-++.+.++++. .|+|++
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v 94 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA 94 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE
Confidence 5567777776 5599999987432 668899988888888877655 3354 456666777777776 467776
No 151
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=47.98 E-value=1.2e+02 Score=32.99 Aligned_cols=209 Identities=15% Similarity=0.182 Sum_probs=120.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHH-HHHHHHHHHHhcCCCeeEEEEeCCCCeeeecCC
Q 016564 106 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQK-VIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDL 184 (387)
Q Consensus 106 ~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~-~I~~iR~~~~~~~~~~i~I~lDL~GPkIRtG~l 184 (387)
..|+++|+ ||+ .+..++..-+.+++.++-..|--.....|.+ .+.--++...-. .|.+
T Consensus 93 ~~Rg~eIt---gp~-~d~~~i~naln~~a~~~m~DfEDS~ap~w~~~~v~g~~N~~~~~-----------------~G~l 151 (545)
T COG2225 93 IDRGVEIT---GPA-VDRKMVINALNEGAKTTMMDFEDSVAPVWAKDKVLGQRNLLGLM-----------------RGEL 151 (545)
T ss_pred hcCCceee---ecc-ccHHHHHHHhccccceEeeccccccccccccchhhhhhhHHHHh-----------------cccc
Confidence 37889997 575 4677899999999999998887754444444 443222221101 0122
Q ss_pred CCCeEecCCCEEEEEecCCCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCCcceee
Q 016564 185 PQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLNV 264 (387)
Q Consensus 185 ~~~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~KgVn~ 264 (387)
+.+. =+.|..+++..+. |+ .=...|.+-|.+-..++|.+
T Consensus 152 ~~~~-~k~GK~y~~~~n~----------------------dr------------------~~~L~vR~~G~hm~e~~i~~ 190 (545)
T COG2225 152 SAAN-QKAGKQYKLKLNP----------------------DR------------------RSLLFVRNRGLHMTEPHITV 190 (545)
T ss_pred cccc-ccccceeecccCc----------------------cc------------------cceeEEeccccccccceEEe
Confidence 1110 1345555543221 11 11223445566666677766
Q ss_pred CCCCCCCCCCCcccHHHHHhhHhc----CCCEEEEcCCCCHHHHHHHHHHHHhc----C---CCceEEEecCChhhhhcH
Q 016564 265 RGKSATLPSITEKDWDDIKFGVDN----KVDFYAVSFVKDAQVVHELKNYLKSC----G---ADIHVIVKIESADSIPNL 333 (387)
Q Consensus 265 p~~~l~lp~LTe~D~~dI~~a~~~----gvD~I~lSfV~sa~dV~~l~~~L~~~----g---~~i~IIAKIEt~~gv~NL 333 (387)
-|..++- .+.+...--+..+-+. +=-|+.+|+.++++++.-..+.+... | +.+++-.+|||..+.-|+
T Consensus 191 DG~~vp~-~i~d~~l~~~~n~~~l~~rg~g~YfylPKm~~p~Ea~f~ndvf~rvEd~LGLprgTiK~~vl~Ee~~a~~~m 269 (545)
T COG2225 191 DGEEVPE-GIFDFVLYGLHNAHDLLARGGGPYFYLPKMEGPEEAAFWNDVFSRVEDTLGLPRGTIKATLLIEERRATLNL 269 (545)
T ss_pred cCccCcH-HHHHHHHHHHHhhhhhhhccCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCceeEeeehhhhhhhhhH
Confidence 5544321 1222222122222222 23689999999999997665554322 2 468899999999999999
Q ss_pred HHHHhhc-C---eEEEcCCcccc-------c-CCC----------CcHHHHHHHHHHHHHHCCCCc
Q 016564 334 HSIITAS-D---GAMVARGDLGA-------E-LPI----------EEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 334 ~eIl~~s-D---GImIaRGDLg~-------e-lg~----------e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+||+... | |+=-||=|-.- + -+. .-+-.+++.-+..|.++|.++
T Consensus 270 ~eii~~~rer~v~lN~GrwDyigs~Ik~~~~~~~~p~R~~~tm~~p~m~AY~~~nv~~c~~~G~~a 335 (545)
T COG2225 270 DEILYALRDRVVGLNTGRWDYIGSEIKTLMEDAVPPDRKGVTMTSPWMGAYEKLNVDTCHKRGAFA 335 (545)
T ss_pred HHHHHHHHhhhccccccchhhhhhHHHHhhhhcCCCChhhhhhcCHHHHHHHHHhHHHHHhcCCcc
Confidence 9999872 3 33335533211 1 111 135667799999999999854
No 152
>PLN02535 glycolate oxidase
Probab=47.64 E-value=56 Score=33.69 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=56.3
Q ss_pred HHHHHhhHhcCCCEEEEcCCCC------HHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEcCC
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKD------AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARG 348 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~s------a~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIaRG 348 (387)
.+|.+.+.+.|+|+|.+|...- +.-+..+.+..+..+.++.||+- -||.+-.+|+++ +|++++||.
T Consensus 234 ~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~d----GGIr~g~Dv~KALalGA~aV~vGr~ 309 (364)
T PLN02535 234 REDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLD----GGVRRGTDVFKALALGAQAVLVGRP 309 (364)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEee----CCCCCHHHHHHHHHcCCCEEEECHH
Confidence 3567788999999999984321 11234444443333445667753 466666677665 899999998
Q ss_pred cccc-cC-CCC---c-HHHHHHHHHHHHHHCCCC
Q 016564 349 DLGA-EL-PIE---E-VPLLQVVFISDIRAMPRM 376 (387)
Q Consensus 349 DLg~-el-g~e---~-v~~~Qk~II~~c~aaGKp 376 (387)
=|-. .. |-+ + +..+.+++-......|..
T Consensus 310 ~l~~l~~~g~~gv~~~l~~l~~el~~~m~l~G~~ 343 (364)
T PLN02535 310 VIYGLAAKGEDGVRKVIEMLKDELEITMALSGCP 343 (364)
T ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7753 21 222 2 233455665666666654
No 153
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=47.56 E-value=1.9e+02 Score=26.14 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=50.3
Q ss_pred HHHHHhhHhcCCCEEEE-----cCCCC-HHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcCCccc
Q 016564 279 WDDIKFGVDNKVDFYAV-----SFVKD-AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLG 351 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~l-----SfV~s-a~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaRGDLg 351 (387)
.++++.+.+.|+|+|-+ +|+.+ ......++++-......+.+..|..... +-++.+.++ +||+.+--
T Consensus 14 ~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh~---- 87 (210)
T TIGR01163 14 GEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPD--RYIEDFAEAGADIITVHP---- 87 (210)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEcc----
Confidence 45677788899999998 36543 2223333332222122333446766543 346666655 78988731
Q ss_pred ccCCCCcHHHHHHHHHHHHHHCCCCcccc
Q 016564 352 AELPIEEVPLLQVVFISDIRAMPRMSSSI 380 (387)
Q Consensus 352 ~elg~e~v~~~Qk~II~~c~aaGKp~g~i 380 (387)
+.. ......++.++++|...|+.
T Consensus 88 ---~~~---~~~~~~~~~~~~~g~~~~~~ 110 (210)
T TIGR01163 88 ---EAS---EHIHRLLQLIKDLGAKAGIV 110 (210)
T ss_pred ---CCc---hhHHHHHHHHHHcCCcEEEE
Confidence 111 12256667888888776543
No 154
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=47.29 E-value=2.2e+02 Score=27.84 Aligned_cols=95 Identities=7% Similarity=0.010 Sum_probs=53.1
Q ss_pred HHHHhhHhcCCCEEEEcC------CCCHHHHHHH-HHHHHhcCCCceEEEecCChhhhhcHHHHHhh-----cCeEEEcC
Q 016564 280 DDIKFGVDNKVDFYAVSF------VKDAQVVHEL-KNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMVAR 347 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSf------V~sa~dV~~l-~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-----sDGImIaR 347 (387)
+.+++.++.|+|+|++.= .-|.++-.++ +..++..++++.||+-+- . +.+..-+.++. +|++|+.+
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECC
Confidence 456788889999988753 2344444444 444555566788888874 2 34333333332 68999866
Q ss_pred CcccccCCCCcHHHHHHHHHHHHHHCCCCcccc
Q 016564 348 GDLGAELPIEEVPLLQVVFISDIRAMPRMSSSI 380 (387)
Q Consensus 348 GDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~i 380 (387)
--... .+-+.+...-+.| |.+.+.|+.++
T Consensus 103 P~y~~-~~~~~i~~~f~~v---~~~~~~pi~lY 131 (289)
T cd00951 103 PYLTE-APQEGLYAHVEAV---CKSTDLGVIVY 131 (289)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 54321 2223333333444 44557776433
No 155
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=47.29 E-value=31 Score=36.99 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=42.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHH
Q 016564 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 108 r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
.+-.+.+.+|+. ...+..+.|+++|++++=+..+||..+...+.|+.+|+
T Consensus 230 grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~ 279 (502)
T PRK07107 230 KRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIRE 279 (502)
T ss_pred cCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHH
Confidence 355667788875 46799999999999999999999988888888888876
No 156
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=47.21 E-value=66 Score=32.81 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=46.0
Q ss_pred HHHhhHhcCCCEEEEcCCC------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEcCCc
Q 016564 281 DIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVARGD 349 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV~------sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIaRGD 349 (387)
|...|+++|+++|++|.=- .+.-|..|.+.+..-++.+.|+.- -||.+=.+|+++ +-||+|||--
T Consensus 236 DA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lD----GGVR~G~DVlKALALGAk~VfiGRP~ 310 (363)
T KOG0538|consen 236 DARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLD----GGVRRGTDVLKALALGAKGVFIGRPI 310 (363)
T ss_pred HHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEe----cCcccchHHHHHHhcccceEEecCch
Confidence 4567899999999999752 455666677777666666665543 266666666665 6799999964
No 157
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.17 E-value=27 Score=29.84 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=21.2
Q ss_pred ccccCcCCEEEEeCCeEEEEEEEEe
Q 016564 218 VNDVEVGDMLLVDGGMMSLLVKSKT 242 (387)
Q Consensus 218 ~~~v~~Gd~IliDDG~I~l~V~~v~ 242 (387)
...+++||+|.+..+++..+|+.+.
T Consensus 31 rr~ik~GD~IiF~~~~l~v~V~~vr 55 (111)
T COG4043 31 RRQIKPGDKIIFNGDKLKVEVIDVR 55 (111)
T ss_pred hcCCCCCCEEEEcCCeeEEEEEEEe
Confidence 4578999999999999998888653
No 158
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=47.11 E-value=40 Score=33.05 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=46.4
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEE
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMV 345 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImI 345 (387)
++-+..+....+.+.|+|||.+..+ ++++++++.+.+. ..+++.|- =. --.+|+.+++++ +|+|-+
T Consensus 183 vev~t~eea~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~---~~ipi~As-GG-I~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 183 VEVESLEEAEEAAEAGADIIMLDNM-KPEEIKEAVQLLK---GRVLLEAS-GG-ITLDNLEEYAETGVDVISS 249 (265)
T ss_pred EEeCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhc---CCCcEEEE-CC-CCHHHHHHHHHcCCCEEEe
Confidence 3445667788889999999999987 5678877776653 22444332 11 135789999888 899988
No 159
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=47.09 E-value=64 Score=31.66 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=47.0
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhcHHHHHhh-cCeEEEcC
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~g--v~NL~eIl~~-sDGImIaR 347 (387)
++-++.+.+..+++.|+|+|.+..+ ++++++++.+.+. .++++.| .-| .+|+.+++++ +|+|-++.
T Consensus 187 vev~s~eea~~A~~~gaDyI~ld~~-~~e~l~~~~~~~~---~~ipi~A----iGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 187 VEVETLEQLKEALEAGADIIMLDNM-SPEELREAVALLK---GRVLLEA----SGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred EEECCHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHHcC---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEEEe
Confidence 3445677788889999999999988 4777777776553 2344333 223 5789999988 89888754
No 160
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=46.65 E-value=1.5e+02 Score=28.08 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=61.4
Q ss_pred HHHHhhHhcCCCEEEEcCCC----------CHHHHHHHHHHHHhcCCCceEEE-------ec---C---ChhhhhcHHHH
Q 016564 280 DDIKFGVDNKVDFYAVSFVK----------DAQVVHELKNYLKSCGADIHVIV-------KI---E---SADSIPNLHSI 336 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~----------sa~dV~~l~~~L~~~g~~i~IIA-------KI---E---t~~gv~NL~eI 336 (387)
+.++++.++|.|+|=+++.. +.+++.++++.+++.|-.+.-+. .+ + ..++++.+...
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~ 99 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKA 99 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHH
Confidence 46788899999999887543 46788999999988875543221 01 1 12356677777
Q ss_pred Hhh-----cCeEEEcCCcccccCC----CCcHHHHHHHHHHHHHHCCCCcc
Q 016564 337 ITA-----SDGAMVARGDLGAELP----IEEVPLLQVVFISDIRAMPRMSS 378 (387)
Q Consensus 337 l~~-----sDGImIaRGDLg~elg----~e~v~~~Qk~II~~c~aaGKp~g 378 (387)
++. ++.|.+..++...+-. .+++...-.++...|.++|...+
T Consensus 100 i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 150 (284)
T PRK13210 100 IRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA 150 (284)
T ss_pred HHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 665 4566665433221111 12333444677888888888654
No 161
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=46.18 E-value=55 Score=29.66 Aligned_cols=70 Identities=14% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCCC---------CHHHHHHHHHHHHhcCCCceEEEecCChhhh--hcHHHHHhh-cC
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFVK---------DAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SD 341 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV~---------sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv--~NL~eIl~~-sD 341 (387)
.|-+..+++..+.+.|+|||.++-+- ....+..++.+...... ++|+|- -|+ +|+.++++. +|
T Consensus 101 ~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~-~pv~a~----GGI~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 101 VSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSID-IPIVAI----GGITLENAAEVLAAGAD 175 (196)
T ss_pred EeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCC-CCEEEE----CCcCHHHHHHHHHcCCC
Q ss_pred eEEEcCC
Q 016564 342 GAMVARG 348 (387)
Q Consensus 342 GImIaRG 348 (387)
||.++++
T Consensus 176 gva~~~~ 182 (196)
T TIGR00693 176 GVAVVSA 182 (196)
T ss_pred EEEEhHH
No 162
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=45.94 E-value=1.1e+02 Score=31.14 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=63.3
Q ss_pred HHHHHhhHhcCCCEEEEcCC---------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEE
Q 016564 279 WDDIKFGVDNKVDFYAVSFV---------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMV 345 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV---------~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImI 345 (387)
.+|.+.+.+.|+|+|.+|.- ...+-+.++++.+.+.+.++.||+- -||.|=.+|+++ +|+++|
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~----GGIr~G~Dv~kalaLGA~aV~i 299 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD----GGVRRGTDVLKALCLGAKAVGL 299 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe----CCCCCHHHHHHHHHcCCCEEEE
Confidence 66788899999999999973 2344455666655555556777754 456666666655 899999
Q ss_pred cCCcccccC--CCCc----HHHHHHHHHHHHHHCCCC
Q 016564 346 ARGDLGAEL--PIEE----VPLLQVVFISDIRAMPRM 376 (387)
Q Consensus 346 aRGDLg~el--g~e~----v~~~Qk~II~~c~aaGKp 376 (387)
||.=|-.-. |-+. +..+++++-......|..
T Consensus 300 G~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 300 GRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 998776443 3332 344556777777777754
No 163
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=45.88 E-value=2e+02 Score=26.70 Aligned_cols=60 Identities=25% Similarity=0.279 Sum_probs=40.2
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEE
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMV 345 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImI 345 (387)
...+.++.+.+.|+|+|.++.-.+.+.++.+++ .++.++.++.+.+ .+.++.+. +|+|.+
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~------~~i~~i~~v~~~~---~~~~~~~~gad~i~~ 128 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPPAEVVERLKA------AGIKVIPTVTSVE---EARKAEAAGADALVA 128 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH------cCCEEEEeCCCHH---HHHHHHHcCCCEEEE
Confidence 345677888899999999998866554444443 2577888887753 34444433 788776
No 164
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=45.76 E-value=2.5e+02 Score=27.83 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=57.3
Q ss_pred HHHHHhhHhcCCCEEEEcCC-------CCHHHHHHHHHHHHhcCCCceEEEecC---ChhhhhcHHHHHhh-cCeEEEcC
Q 016564 279 WDDIKFGVDNKVDFYAVSFV-------KDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV-------~sa~dV~~l~~~L~~~g~~i~IIAKIE---t~~gv~NL~eIl~~-sDGImIaR 347 (387)
.+.+++.++.|+++|++.-. ...|-.+-++...+..++++.||+-+= |.++++....-.+. +|++|+-+
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGR 111 (309)
T ss_pred HHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 34567788899999987422 233333334445555667788998873 55666666555554 89999865
Q ss_pred CcccccCCCCcHHHHHHHHHHHHHHC-CCCcccccc
Q 016564 348 GDLGAELPIEEVPLLQVVFISDIRAM-PRMSSSIKA 382 (387)
Q Consensus 348 GDLg~elg~e~v~~~Qk~II~~c~aa-GKp~g~id~ 382 (387)
-.... ..-+.+...-+. .|.+. +.|+.++.-
T Consensus 112 P~y~~-~~~~~l~~yf~~---va~a~~~lPv~iYn~ 143 (309)
T cd00952 112 PMWLP-LDVDTAVQFYRD---VAEAVPEMAIAIYAN 143 (309)
T ss_pred CcCCC-CCHHHHHHHHHH---HHHhCCCCcEEEEcC
Confidence 43211 112333333333 44456 577754433
No 165
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=45.65 E-value=2.1e+02 Score=27.25 Aligned_cols=99 Identities=12% Similarity=0.016 Sum_probs=60.0
Q ss_pred HHHHhhHhcCCCEEEEcCCC----------CHHHHHHHHHHHHhcCCCceEEEe-----c--C------ChhhhhcHHHH
Q 016564 280 DDIKFGVDNKVDFYAVSFVK----------DAQVVHELKNYLKSCGADIHVIVK-----I--E------SADSIPNLHSI 336 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~----------sa~dV~~l~~~L~~~g~~i~IIAK-----I--E------t~~gv~NL~eI 336 (387)
+.++.+.+.|.|+|=++.-. +.+++.++++.+++.|-.+.-++- . - -.++++.+...
T Consensus 25 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 104 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKA 104 (283)
T ss_pred HHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHH
Confidence 46778889999999887532 678899999999887765432221 1 0 12345555555
Q ss_pred Hhh-----cCeEEEcCCcccccCCCC----cHHHHHHHHHHHHHHCCCCcc
Q 016564 337 ITA-----SDGAMVARGDLGAELPIE----EVPLLQVVFISDIRAMPRMSS 378 (387)
Q Consensus 337 l~~-----sDGImIaRGDLg~elg~e----~v~~~Qk~II~~c~aaGKp~g 378 (387)
++. ++.|.++.++...+...+ .+...-+++...|.++|+.++
T Consensus 105 i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~ 155 (283)
T PRK13209 105 IQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLA 155 (283)
T ss_pred HHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 554 456666544332222212 223344778888888888764
No 166
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=45.56 E-value=74 Score=30.07 Aligned_cols=73 Identities=16% Similarity=0.293 Sum_probs=49.2
Q ss_pred CCCceEEEec-----CCCCCC-HHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCe-eEEEEeCCCCee
Q 016564 107 RRKTKIVCTI-----GPSTNT-REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNV-IAIMLDTKGPEV 179 (387)
Q Consensus 107 ~r~TKII~TI-----GPss~~-~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~-i~I~lDL~GPkI 179 (387)
.++||||++- .|+..+ .+.+++|.+.|.|+++|-..--+.++..+++...+++... ...| +++.|--.|.--
T Consensus 116 ~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~-~~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 116 KGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEH-ADVPLITMSMGDRGKIS 194 (228)
T ss_pred HCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhc-CCCCEEEEeCCCCChhH
Confidence 4689999987 233222 3688999999999999998877788888888776665433 2233 555554444333
Q ss_pred e
Q 016564 180 R 180 (387)
Q Consensus 180 R 180 (387)
|
T Consensus 195 R 195 (228)
T TIGR01093 195 R 195 (228)
T ss_pred h
Confidence 4
No 167
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=45.39 E-value=1.9e+02 Score=28.80 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=39.1
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEE
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMV 345 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImI 345 (387)
..+.++.+++.++++|.++|-...+.+..+ ++. .+.+++.+=|.+- .....+. +|+|.+
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~l----k~~--g~~v~~~v~s~~~---a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRL----KEN--GVKVIPVVASVAL---AKRMEKAGADAVIA 135 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHH----HHc--CCEEEEEcCCHHH---HHHHHHcCCCEEEE
Confidence 455678889999999999886554444444 333 4778888866543 3333333 899887
No 168
>PRK02227 hypothetical protein; Provisional
Probab=45.07 E-value=1.7e+02 Score=28.66 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=51.3
Q ss_pred hhHhcCCCEEEEcCC--CCHHHH-HHHHH---HHHhcCCCceEEEec--C--Chhh--hhcHHHHHhh--cCeEEEcCCc
Q 016564 284 FGVDNKVDFYAVSFV--KDAQVV-HELKN---YLKSCGADIHVIVKI--E--SADS--IPNLHSIITA--SDGAMVARGD 349 (387)
Q Consensus 284 ~a~~~gvD~I~lSfV--~sa~dV-~~l~~---~L~~~g~~i~IIAKI--E--t~~g--v~NL~eIl~~--sDGImIaRGD 349 (387)
.+...|+|||=+-+. .+.++. ..++. .++....+..+++-. + ...+ -..+.+++.. .||+||.-++
T Consensus 75 ~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~ 154 (238)
T PRK02227 75 GAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAI 154 (238)
T ss_pred HHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEeccc
Confidence 345579999877664 344332 22222 233333444555433 2 1112 2234445543 7899995443
Q ss_pred ccccCCCCcHHH-HHHHHHHHHHHCCCCccccccc
Q 016564 350 LGAELPIEEVPL-LQVVFISDIRAMPRMSSSIKAF 383 (387)
Q Consensus 350 Lg~elg~e~v~~-~Qk~II~~c~aaGKp~g~id~~ 383 (387)
=.---=++.+.. .-+.+++.|+++|..+| +.|.
T Consensus 155 Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~g-LAGS 188 (238)
T PRK02227 155 KDGKSLFDHMDEEELAEFVAEARSHGLMSA-LAGS 188 (238)
T ss_pred CCCcchHhhCCHHHHHHHHHHHHHcccHhH-hccc
Confidence 211111122222 33789999999999987 5554
No 169
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=44.80 E-value=63 Score=32.22 Aligned_cols=64 Identities=9% Similarity=0.057 Sum_probs=48.3
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhcHHHHHhh-cCeEEEc
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVA 346 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~g--v~NL~eIl~~-sDGImIa 346 (387)
..++.+.+++.|+|.|.+=.. ++++++++.+++.+.+.++ ++|-.-| ++|+.+++.. .|.|.+|
T Consensus 198 tleqa~ea~~agaDiI~LDn~-~~e~l~~av~~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQLDKF-SPQQATEIAQIAPSLAPHC----TLSLAGGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCe----EEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 566778889999999999876 8999999998886544443 3554444 4688888877 8888764
No 170
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=44.77 E-value=1.3e+02 Score=24.99 Aligned_cols=67 Identities=10% Similarity=0.205 Sum_probs=45.3
Q ss_pred CCeEecCCCEEEEEecCCCCC--ccEEEeccCCcccccCcCCEEEEe-CCeEEEEEEEEeC-C-eEEEEEEECc
Q 016564 186 QPITLTSGQEFTFTIQRGVGS--AECVSVNYDDFVNDVEVGDMLLVD-GGMMSLLVKSKTE-D-SVKCEVVDGG 254 (387)
Q Consensus 186 ~~i~Lk~G~~v~lt~~~~~g~--~~~i~v~~~~l~~~v~~Gd~IliD-DG~I~l~V~~v~~-d-~v~c~V~~gG 254 (387)
+++.+.+|+.+.|..+...|. ....|.+.. ...+....++.++ +|.+.+.=....+ + ...|.+.+..
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~--~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD--LLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCC--CccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 468899999999999754443 455666432 2334557888885 6888777555443 3 5899988764
No 171
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=44.76 E-value=70 Score=32.98 Aligned_cols=89 Identities=22% Similarity=0.199 Sum_probs=51.2
Q ss_pred HHHHHhhHhcCCCEEEE-----------cCCCCHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh--cCeE
Q 016564 279 WDDIKFGVDNKVDFYAV-----------SFVKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA--SDGA 343 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~l-----------SfV~sa~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~--sDGI 343 (387)
.+..+...+.|++++.+ .+.-+-+.|+.+++-+ .++.+||. |.+.+- .+.+++. +|||
T Consensus 158 vd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~----~~ipviaNGnI~~~~d---~~~~~~~tG~dGV 230 (358)
T KOG2335|consen 158 VDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENV----PDIPVIANGNILSLED---VERCLKYTGADGV 230 (358)
T ss_pred HHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhC----cCCcEEeeCCcCcHHH---HHHHHHHhCCceE
Confidence 34445566788888776 2222334444444443 23777775 665444 4444553 8999
Q ss_pred EEcCCcccccCCC--C----cHHHHHHHHHHHHHHCC
Q 016564 344 MVARGDLGAELPI--E----EVPLLQVVFISDIRAMP 374 (387)
Q Consensus 344 mIaRGDLg~elg~--e----~v~~~Qk~II~~c~aaG 374 (387)
|+|||-|..-.=+ . .....-.+-+..|.+++
T Consensus 231 M~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~ 267 (358)
T KOG2335|consen 231 MSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFG 267 (358)
T ss_pred EecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcC
Confidence 9999988654333 1 22333455556666666
No 172
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=44.74 E-value=33 Score=28.89 Aligned_cols=42 Identities=29% Similarity=0.507 Sum_probs=31.6
Q ss_pred CCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEec
Q 016564 215 DDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELK 257 (387)
Q Consensus 215 ~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~ 257 (387)
.++.+.+++||+|..-.| +.-+|++++++.++.++-.+..++
T Consensus 38 ~~ml~sL~kGD~VvT~gG-i~G~V~~v~d~~v~I~l~~~~~i~ 79 (97)
T COG1862 38 QELLNSLKKGDEVVTIGG-IVGTVTKVGDDTVEIELGDGTKIK 79 (97)
T ss_pred HHHHHhccCCCEEEEcCC-eEEEEEEEecCcEEEEECCCeEEE
Confidence 357789999999999877 667888888888666655555544
No 173
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=44.62 E-value=1.4e+02 Score=27.89 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=55.9
Q ss_pred CCCCcccHH-HHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEec-----------CChhhhhcHHHHHhh
Q 016564 272 PSITEKDWD-DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKI-----------ESADSIPNLHSIITA 339 (387)
Q Consensus 272 p~LTe~D~~-dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKI-----------Et~~gv~NL~eIl~~ 339 (387)
|..|..|.+ .++.+.++|+|.++++ +-.+...+..+. .+..++.++ .+..-+..+++.++.
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~---~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA---GDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC---CCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 556777755 5567888899999998 334444444331 122333222 112223335555554
Q ss_pred -cCeE--EEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 340 -SDGA--MVARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 340 -sDGI--mIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+|++ ++--+++. ..++...-+++.+.|+++|.|+
T Consensus 89 Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~ 125 (235)
T cd00958 89 GADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPL 125 (235)
T ss_pred CCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCE
Confidence 6766 55445442 2345556688999999999997
No 174
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=44.43 E-value=68 Score=29.88 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=36.9
Q ss_pred HHHHhhHhcCCCEEEEcCC--------CCHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh-cCeEEEcCC
Q 016564 280 DDIKFGVDNKVDFYAVSFV--------KDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDGAMVARG 348 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV--------~sa~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~-sDGImIaRG 348 (387)
+++..+.+.|+|+|.+... ....++..++++.+.. ++++++- |-|+ +++.+.++. +||+++|++
T Consensus 134 ~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~---~~~~~~l~~GadgV~vGsa 208 (219)
T cd04729 134 EEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSP---EQAAKALELGADAVVVGSA 208 (219)
T ss_pred HHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCH---HHHHHHHHCCCCEEEEchH
Confidence 4567788899999865321 1122333444333322 3555542 3332 566666666 899999865
No 175
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=44.35 E-value=56 Score=32.74 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=39.3
Q ss_pred HHHHhhHhcCCCEEEEcCCCC-----------HHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHh--hcCeEE
Q 016564 280 DDIKFGVDNKVDFYAVSFVKD-----------AQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIIT--ASDGAM 344 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~s-----------a~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~--~sDGIm 344 (387)
+.++.+.+.|+|+|.+.- ++ .+.+.++++.+ +++||+- |.|++- +.++++ -+||||
T Consensus 152 ~~a~~l~~~Gvd~i~Vh~-Rt~~~~y~g~~~~~~~i~~ik~~~-----~iPVi~nGdI~t~~d---a~~~l~~~g~DgVm 222 (312)
T PRK10550 152 EIADAVQQAGATELVVHG-RTKEDGYRAEHINWQAIGEIRQRL-----TIPVIANGEIWDWQS---AQQCMAITGCDAVM 222 (312)
T ss_pred HHHHHHHhcCCCEEEECC-CCCccCCCCCcccHHHHHHHHhhc-----CCcEEEeCCcCCHHH---HHHHHhccCCCEEE
Confidence 444556678999999942 21 22344444332 4677764 666644 445453 389999
Q ss_pred EcCCcccc
Q 016564 345 VARGDLGA 352 (387)
Q Consensus 345 IaRGDLg~ 352 (387)
||||=|+-
T Consensus 223 iGRg~l~n 230 (312)
T PRK10550 223 IGRGALNI 230 (312)
T ss_pred EcHHhHhC
Confidence 99996654
No 176
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=44.29 E-value=2.5e+02 Score=27.24 Aligned_cols=99 Identities=18% Similarity=0.062 Sum_probs=57.0
Q ss_pred HHHHHhhHhcCCCEEEEcCC------CCHHHHHH-HHHHHHhcCCCceEEEecC---ChhhhhcHHHHHhh-cCeEEEcC
Q 016564 279 WDDIKFGVDNKVDFYAVSFV------KDAQVVHE-LKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV------~sa~dV~~-l~~~L~~~g~~i~IIAKIE---t~~gv~NL~eIl~~-sDGImIaR 347 (387)
.+.+++.++.|+|++++.=- =|.++=.+ ++..++..++++.|++-+- |.++++.+...-+. +||+|+.+
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec
Confidence 45567888999999988532 23333333 3334455567888998874 45555555554444 89999865
Q ss_pred CcccccCCCCcHHHHHHHHHHHHHHCCCCccccc
Q 016564 348 GDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIK 381 (387)
Q Consensus 348 GDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id 381 (387)
-.... ..-++ +-...-..|.+.++|+.+.+
T Consensus 105 P~~~~-~s~~~---l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 105 PYYFK-PSQEE---LIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp STSSS-CCHHH---HHHHHHHHHHHSSSEEEEEE
T ss_pred ccccc-chhhH---HHHHHHHHHhhcCCCEEEEE
Confidence 43321 22223 33444455566778874433
No 177
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.23 E-value=34 Score=36.46 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=36.9
Q ss_pred ecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHH
Q 016564 115 TIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 115 TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
-+|.+....+.++.|+++|+++.=+..+||......++|+.||+
T Consensus 221 av~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~ 264 (479)
T PRK07807 221 AVGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRA 264 (479)
T ss_pred hhccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHH
Confidence 34555566899999999999999999999998877888888775
No 178
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=44.15 E-value=99 Score=30.90 Aligned_cols=65 Identities=11% Similarity=0.190 Sum_probs=47.5
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChh--hhhcHHHHHhh-cCeEEEcC
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESAD--SIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~--gv~NL~eIl~~-sDGImIaR 347 (387)
...+++..|++.|+|.|++-.. ++++++++.+++. ..++ +.+|--- -++|+.+++.. .|.|-+|.
T Consensus 196 esle~~~eAl~agaDiImLDNm-~~e~~~~av~~l~-~~~~----~~lEaSGgIt~~ni~~yA~tGVD~IS~ga 263 (280)
T COG0157 196 ESLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLG-LAGR----ALLEASGGITLENIREYAETGVDVISVGA 263 (280)
T ss_pred CCHHHHHHHHHcCCCEEEecCC-CHHHHHHHHHHhc-cCCc----eEEEEeCCCCHHHHHHHhhcCCCEEEeCc
Confidence 3467788999999999999988 7888988888762 2222 3344333 35788898887 88887753
No 179
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=43.78 E-value=3e+02 Score=28.87 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=36.8
Q ss_pred eeEEEEeCCCCeeeecCCCCCeEecCCCEEEEEecCCCCCccEEEe--ccCCcccccCcCCEEEEe--------CCeEEE
Q 016564 167 VIAIMLDTKGPEVRSGDLPQPITLTSGQEFTFTIQRGVGSAECVSV--NYDDFVNDVEVGDMLLVD--------GGMMSL 236 (387)
Q Consensus 167 ~i~I~lDL~GPkIRtG~l~~~i~Lk~G~~v~lt~~~~~g~~~~i~v--~~~~l~~~v~~Gd~IliD--------DG~I~l 236 (387)
.+.|-..+.+-+... .| .++||..+....-.|+.. .+..+--.++-|++|++- .|..+|
T Consensus 19 ~v~V~GEisn~~~~~----------sG-H~YFtLkD~~a~i~~vmf~~~~~~l~f~~~~G~~V~v~g~v~~y~~~G~~ql 87 (432)
T TIGR00237 19 QVWIQGEISNFTQPV----------SG-HWYFTLKDENAQVRCVMFRGNNNRLKFRPQNGQQVLVRGGISVYEPRGDYQI 87 (432)
T ss_pred cEEEEEEecCCeeCC----------Cc-eEEEEEEcCCcEEEEEEEcChhhCCCCCCCCCCEEEEEEEEEEECCCCcEEE
Confidence 467776666655321 22 356666543222223222 223343457889998663 677888
Q ss_pred EEEEEeCC
Q 016564 237 LVKSKTED 244 (387)
Q Consensus 237 ~V~~v~~d 244 (387)
.|.+++..
T Consensus 88 ~v~~i~~~ 95 (432)
T TIGR00237 88 ICFEMQPA 95 (432)
T ss_pred EEEEeccC
Confidence 88776653
No 180
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=43.72 E-value=2.4e+02 Score=25.36 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=48.5
Q ss_pred HHHHhhHhcCCCEEEE-----cCCCCH----HHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcCCc
Q 016564 280 DDIKFGVDNKVDFYAV-----SFVKDA----QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGD 349 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~l-----SfV~sa----~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaRGD 349 (387)
+.++.+.+.|+|+|-+ +|+.+. +.++++++.. +..+.+-.++.++. +.++.+.++ +||+.|--+
T Consensus 16 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~~d~~--~~~~~~~~~g~dgv~vh~~- 89 (211)
T cd00429 16 EELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMVENPE--RYIEAFAKAGADIITFHAE- 89 (211)
T ss_pred HHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeeeCCHH--HHHHHHHHcCCCEEEECcc-
Confidence 4567888899999999 776433 4455555432 22333446666553 336666655 789866211
Q ss_pred ccccCCCCcHHHHHHHHHHHHHHCCCCccc
Q 016564 350 LGAELPIEEVPLLQVVFISDIRAMPRMSSS 379 (387)
Q Consensus 350 Lg~elg~e~v~~~Qk~II~~c~aaGKp~g~ 379 (387)
.. ....+.++.++++|+.+|.
T Consensus 90 ------~~---~~~~~~~~~~~~~~~~~g~ 110 (211)
T cd00429 90 ------AT---DHLHRTIQLIKELGMKAGV 110 (211)
T ss_pred ------ch---hhHHHHHHHHHHCCCeEEE
Confidence 11 1113446666777766543
No 181
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=43.48 E-value=96 Score=31.89 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=53.0
Q ss_pred HHhhHhcCCCEEEEc--CCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcCCcccccCCCCc
Q 016564 282 IKFGVDNKVDFYAVS--FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEE 358 (387)
Q Consensus 282 I~~a~~~gvD~I~lS--fV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaRGDLg~elg~e~ 358 (387)
|+..-+.|+|.|-++ -.++++.+.++++.+ +++++|-|-=- ..-+-+-++. .|.+=|-||..|..=
T Consensus 42 I~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~-----~vPLVaDiHf~--~rla~~~~~~g~~k~RINPGNig~~~---- 110 (361)
T COG0821 42 IKALERAGCDIVRVTVPDMEAAEALKEIKQRL-----NVPLVADIHFD--YRLALEAAECGVDKVRINPGNIGFKD---- 110 (361)
T ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhC-----CCCEEEEeecc--HHHHHHhhhcCcceEEECCcccCcHH----
Confidence 344556899986554 444444444444433 78899988543 1112222233 789999999876543
Q ss_pred HHHHHHHHHHHHHHCCCCc
Q 016564 359 VPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 359 v~~~Qk~II~~c~aaGKp~ 377 (387)
--+.++++|+.+|||+
T Consensus 111 ---~v~~vVe~Ak~~g~pi 126 (361)
T COG0821 111 ---RVREVVEAAKDKGIPI 126 (361)
T ss_pred ---HHHHHHHHHHHcCCCE
Confidence 4578999999999995
No 182
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=43.46 E-value=2.5e+02 Score=25.33 Aligned_cols=65 Identities=14% Similarity=0.289 Sum_probs=43.3
Q ss_pred HHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceE-EEecCChhhhhcHHHHHh-hcCeEEEcCC
Q 016564 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHV-IVKIESADSIPNLHSIIT-ASDGAMVARG 348 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~I-IAKIEt~~gv~NL~eIl~-~sDGImIaRG 348 (387)
.++.+.+.|+|+|.++.....+.+.++.+++++.|..+.+ +..-.|+.-+. +++. -+|.+.+.++
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~---~~~~~~~d~v~~~~~ 135 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRA---KLLKLGVDIVILHRG 135 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHCCCCEEEEcCc
Confidence 4577889999999999877776777777777765543322 24556655443 2444 4788887654
No 183
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=43.32 E-value=78 Score=30.62 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=49.6
Q ss_pred CCCceEEEec-----CCCCCC-HHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCe-eEEEEeCCCCee
Q 016564 107 RRKTKIVCTI-----GPSTNT-REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNV-IAIMLDTKGPEV 179 (387)
Q Consensus 107 ~r~TKII~TI-----GPss~~-~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~-i~I~lDL~GPkI 179 (387)
..+||+|++- .|+.++ .+.+++|.+.|.|+++|-..--+.++..+++...+++.......| +++.|--.|.--
T Consensus 133 ~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~S 212 (253)
T PRK02412 133 EHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRIS 212 (253)
T ss_pred HcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHH
Confidence 4579999987 333222 367889999999999999887778888888877776644322233 555554444333
Q ss_pred e
Q 016564 180 R 180 (387)
Q Consensus 180 R 180 (387)
|
T Consensus 213 R 213 (253)
T PRK02412 213 R 213 (253)
T ss_pred H
Confidence 4
No 184
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=43.17 E-value=1e+02 Score=28.60 Aligned_cols=67 Identities=19% Similarity=0.145 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 303 dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
-+..+.+.+.+.+.++.+-+.-++... +|+++++.-.|.|+.+-.. +..+..+-+.|+++++|. |.+
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~--i~~ 142 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPL--ISA 142 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCE--EEE
Confidence 344555667777777665554444333 5788888888988776422 356778999999999997 554
No 185
>PRK02999 malate synthase G; Provisional
Probab=43.07 E-value=54 Score=36.55 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=62.5
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhc-------CCCceEEEecCChhhhhcHHHHHhhc-C---eEEEcCCcccc-----
Q 016564 289 KVDFYAVSFVKDAQVVHELKNYLKSC-------GADIHVIVKIESADSIPNLHSIITAS-D---GAMVARGDLGA----- 352 (387)
Q Consensus 289 gvD~I~lSfV~sa~dV~~l~~~L~~~-------g~~i~IIAKIEt~~gv~NL~eIl~~s-D---GImIaRGDLg~----- 352 (387)
|.=||..|+.++++++.--.+++... -..+++-.+|||..+--|++||+.+. | ||=-||=|-.-
T Consensus 389 GsiY~ykPKmegp~Ea~fwndlF~~~E~~LGLp~gTIK~~VmiEe~ras~nL~eii~elr~rv~fiNtGrwDytfseIht 468 (726)
T PRK02999 389 GSVYIVKPKMHGPEEVAFANELFGRVEDLLGLPRNTLKVGIMDEERRTSVNLKACIRAAKDRVVFINTGFLDRTGDEIHT 468 (726)
T ss_pred CCeeEEecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeeccHhHhhHHHHHHHHHhheeecccCchhhhhhHHHH
Confidence 55699999999999998766554322 24689999999999999999999862 2 22222222110
Q ss_pred --c----------CCCCcHHHHHHHHHHH---HHHCCCCccccc-ccee
Q 016564 353 --E----------LPIEEVPLLQVVFISD---IRAMPRMSSSIK-AFYL 385 (387)
Q Consensus 353 --e----------lg~e~v~~~Qk~II~~---c~aaGKp~g~id-~~~~ 385 (387)
+ +...-+..+.+..+.. |...|+.. |- |+|.
T Consensus 469 ~~~ag~~vRk~~~mt~p~m~AYe~~nV~~gL~Ch~rG~aa--IGkGMwA 515 (726)
T PRK02999 469 SMEAGPMVRKGDMKSSPWIAAYEDNNVDIGLACGLRGRAQ--IGKGMWA 515 (726)
T ss_pred hhhccCcCccccccccHHHHHHHHHHHHHHHhcCCCChhh--hcCChhh
Confidence 0 0111234445677777 99988887 66 6653
No 186
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=42.99 E-value=3.1e+02 Score=26.32 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=37.1
Q ss_pred cccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhcHHHHHhh
Q 016564 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITA 339 (387)
Q Consensus 276 e~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAK-IEt~~gv~NL~eIl~~ 339 (387)
+.-.+..+...+.|+|+++++-..+.++++.+.+.+ +.+++.. .+... ..+++++.+.
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~-----~~Pl~~~~~~~~~-~~~~~~l~~l 218 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAP-----DVPLNVNMTPGGN-LLTVAELAEL 218 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcC-----CCCEEEEecCCCC-CCCHHHHHHC
Confidence 344666677889999999999988887777766542 3344443 22221 2466666544
No 187
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=42.97 E-value=91 Score=30.08 Aligned_cols=70 Identities=10% Similarity=0.200 Sum_probs=57.3
Q ss_pred HHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCC
Q 016564 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI 356 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~ 356 (387)
..+..-.+.|+|+|.+- ++...++.++-+++++.|....|.-+=+|+ ++.++.++...|.|++ ++++=|+
T Consensus 75 ~~i~~fa~agad~It~H-~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll----MsVnPGf 144 (220)
T COG0036 75 RYIEAFAKAGADIITFH-AEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL----MSVNPGF 144 (220)
T ss_pred HHHHHHHHhCCCEEEEE-eccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE----EeECCCC
Confidence 34666678899999885 457889999999999999999999999996 5669999999999988 4555554
No 188
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.45 E-value=48 Score=31.33 Aligned_cols=89 Identities=11% Similarity=0.139 Sum_probs=54.6
Q ss_pred EEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCc--------ccccCCCC--cHHHHH
Q 016564 294 AVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGD--------LGAELPIE--EVPLLQ 363 (387)
Q Consensus 294 ~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGD--------Lg~elg~e--~v~~~Q 363 (387)
.+=...++++..++.+.|-+.|-.. |=.-.-|+.+++.+.++.+..+.++||-|= .+.+.|.+ =-|...
T Consensus 8 ~Vir~~~~~~a~~ia~al~~gGi~~-iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~ 86 (201)
T PRK06015 8 PVLLIDDVEHAVPLARALAAGGLPA-IEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTT 86 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCE-EEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCC
Confidence 3334456777777766665544331 223346777777777777666667776552 22222222 124556
Q ss_pred HHHHHHHHHCCCCcccccccee
Q 016564 364 VVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 364 k~II~~c~aaGKp~g~id~~~~ 385 (387)
..+++.|+++|+|. +-|..+
T Consensus 87 ~~vi~~a~~~~i~~--iPG~~T 106 (201)
T PRK06015 87 QELLAAANDSDVPL--LPGAAT 106 (201)
T ss_pred HHHHHHHHHcCCCE--eCCCCC
Confidence 89999999999998 777654
No 189
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=42.35 E-value=1e+02 Score=29.45 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=54.2
Q ss_pred HHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCC
Q 016564 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI 356 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~ 356 (387)
..+....+.|+|+|.+-+= +..++.+.-+++++.|....|..+-+| -++.+..++...|.|++ ++++-|+
T Consensus 76 ~~i~~~~~~gad~I~~H~E-a~~~~~~~l~~Ir~~g~k~GlalnP~T--~~~~i~~~l~~vD~Vlv----MtV~PGf 145 (223)
T PRK08745 76 RIVPDFADAGATTISFHPE-ASRHVHRTIQLIKSHGCQAGLVLNPAT--PVDILDWVLPELDLVLV----MSVNPGF 145 (223)
T ss_pred HHHHHHHHhCCCEEEEccc-CcccHHHHHHHHHHCCCceeEEeCCCC--CHHHHHHHHhhcCEEEE----EEECCCC
Confidence 3456667889998887654 446777777888888988889999998 56779999999999888 4555554
No 190
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=42.16 E-value=1.7e+02 Score=28.77 Aligned_cols=93 Identities=9% Similarity=0.035 Sum_probs=51.5
Q ss_pred HHHHHhhHhcCCCEEEEc------CCCCHHHHHHH-HHHHHhcCCCceEEEecCChhhhhcHHHHHhh-----cCeEEEc
Q 016564 279 WDDIKFGVDNKVDFYAVS------FVKDAQVVHEL-KNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMVA 346 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lS------fV~sa~dV~~l-~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-----sDGImIa 346 (387)
.+.+++.++.|+|+|.+. +-=|.++-.++ +...+..++++.|++-+-+ +.+..-+.++. +|++|+-
T Consensus 29 ~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~~ 106 (296)
T TIGR03249 29 RENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLLL 106 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEEC
Confidence 345678888999999874 22344444444 3445555667888888742 34433333333 6898886
Q ss_pred CCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 347 RGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 347 RGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+--... ..-+.+...-+.| |.+.+.|+
T Consensus 107 pP~y~~-~s~~~i~~~f~~v---~~a~~~pv 133 (296)
T TIGR03249 107 PPYLIN-GEQEGLYAHVEAV---CESTDLGV 133 (296)
T ss_pred CCCCCC-CCHHHHHHHHHHH---HhccCCCE
Confidence 644321 1123333333444 34456676
No 191
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=42.08 E-value=1.3e+02 Score=27.20 Aligned_cols=129 Identities=22% Similarity=0.253 Sum_probs=70.7
Q ss_pred eeCCCCCccccccccccccCccccccccccccCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHH-
Q 016564 70 VPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHAS- 148 (387)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~- 148 (387)
.+|+|+.-+.|++++++|.... -++..+++-++ -+||+..+
T Consensus 3 ~~lT~~G~~~L~~El~~L~~~~------------------------------r~~~~~~i~~A--------r~~GDlsEN 44 (156)
T TIGR01461 3 PLITPEGYEKLKQELNYLWREE------------------------------RPEVTQKVTWA--------ASLGDRSEN 44 (156)
T ss_pred cccCHHHHHHHHHHHHHHHhcc------------------------------cHHHHHHHHHH--------HHcCCcchh
Confidence 4577777778888888775322 14566666555 24555322
Q ss_pred ---------HHHHHHHHHHHHHhcCCCeeEEEEe---CCCCeeeecCCCCCeEe--cCCCEEEEEecC---CCCCccEEE
Q 016564 149 ---------HQKVIDLVKEYNAQSKDNVIAIMLD---TKGPEVRSGDLPQPITL--TSGQEFTFTIQR---GVGSAECVS 211 (387)
Q Consensus 149 ---------~~~~I~~iR~~~~~~~~~~i~I~lD---L~GPkIRtG~l~~~i~L--k~G~~v~lt~~~---~~g~~~~i~ 211 (387)
...+-..|+++...+. + +.++| .++.+++.|.. +.| ..|++.++++-. .......|+
T Consensus 45 aeY~aak~~~~~le~rI~~L~~~L~-~--A~iid~~~~~~~~V~~Gs~---V~l~d~~~~~~~~~iVgp~ead~~~~~IS 118 (156)
T TIGR01461 45 ADYQYGKKRLREIDRRVRFLTKRLE-N--LKVVDYSPQQEGKVFFGAW---VELENDDGVTHRFRIVGYDEIDGRKNYIS 118 (156)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-c--CEEeCCCCCCCCEEecCeE---EEEEECCCCEEEEEEEChHHhCcCCCeEC
Confidence 2222334666666553 2 33343 34456666654 333 355666554421 111223455
Q ss_pred eccC--CcccccCcCCEEEEe--CCeEEEEEEEEe
Q 016564 212 VNYD--DFVNDVEVGDMLLVD--GGMMSLLVKSKT 242 (387)
Q Consensus 212 v~~~--~l~~~v~~Gd~IliD--DG~I~l~V~~v~ 242 (387)
...| .-+-.-++||.|-+. +|...++|.++.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~g~~~~eI~~I~ 153 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPAGEASWYVNAIE 153 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCCCcEEEEEEEEE
Confidence 4333 123356899999886 788888888765
No 192
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=41.77 E-value=47 Score=34.28 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=42.9
Q ss_pred ccHHHHHhhHhcCCCEEEEcC-------------CCCHH---HHHHH-HHHHHhcCC-CceEEEecCChhhhhcHHHHHh
Q 016564 277 KDWDDIKFGVDNKVDFYAVSF-------------VKDAQ---VVHEL-KNYLKSCGA-DIHVIVKIESADSIPNLHSIIT 338 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSf-------------V~sa~---dV~~l-~~~L~~~g~-~i~IIAKIEt~~gv~NL~eIl~ 338 (387)
.+.++...+++.|+|+|...- +-.+. |+..+ ++|+++.+. .+.|||- -|+.+-.+|++
T Consensus 197 ~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAd----GGI~tg~di~k 272 (369)
T TIGR01304 197 NDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIAD----GGIETSGDLVK 272 (369)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEe----CCCCCHHHHHH
Confidence 345667777889999998441 11222 23322 457777764 5888874 35555555555
Q ss_pred h----cCeEEEcCCc
Q 016564 339 A----SDGAMVARGD 349 (387)
Q Consensus 339 ~----sDGImIaRGD 349 (387)
+ +|++|+|+.=
T Consensus 273 AlAlGAdaV~iGt~~ 287 (369)
T TIGR01304 273 AIACGADAVVLGSPL 287 (369)
T ss_pred HHHcCCCEeeeHHHH
Confidence 5 8999997643
No 193
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=41.52 E-value=75 Score=33.01 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=56.2
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHH------HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQ------VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~------dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIaR 347 (387)
+.+|.+.+++.|+|+|.+|...-.. -+..|.+.....+.++.||+- -|+.+=.+|+++ +|++++||
T Consensus 255 s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~d----GGIr~g~Di~KALaLGA~~V~iGr 330 (381)
T PRK11197 255 DPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILAD----SGIRNGLDVVRMIALGADTVLLGR 330 (381)
T ss_pred CHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEee----CCcCcHHHHHHHHHcCcCceeEhH
Confidence 3456778889999999998764221 122233322223445677764 466666666665 89999999
Q ss_pred Ccccc--cCCCC----cHHHHHHHHHHHHHHCCCC
Q 016564 348 GDLGA--ELPIE----EVPLLQVVFISDIRAMPRM 376 (387)
Q Consensus 348 GDLg~--elg~e----~v~~~Qk~II~~c~aaGKp 376 (387)
.=|-. .-|-+ .+..++.++-......|..
T Consensus 331 ~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 365 (381)
T PRK11197 331 AFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAK 365 (381)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 77643 23433 2344455665555555544
No 194
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.22 E-value=59 Score=32.38 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=48.1
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhcHHHHHhh-cCeEEEcC
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~g--v~NL~eIl~~-sDGImIaR 347 (387)
.+.+++..+++.|+|.|.+=+. ++++++++..++.. .. +||---| ++|+.++++. .|.|.+|.
T Consensus 201 ~slee~~ea~~~gaDiImLDn~-s~e~l~~av~~~~~---~~----~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 201 DRLDQIEPVLAAGVDTIMLDNF-SLDDLREGVELVDG---RA----IVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred CCHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHhCC---Ce----EEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 3567788889999999999998 78899888887742 21 4665544 4688888877 89888864
No 195
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=40.90 E-value=1.8e+02 Score=29.02 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=44.2
Q ss_pred CCceEEEecCCCCCCH----HHHHHHHHhCCceeEeecCCCC-----HHHHHHHHHHHHHHHHhcCCCeeEEEEeCCC
Q 016564 108 RKTKIVCTIGPSTNTR----EMIWKLAEAGMNVARLNMSHGD-----HASHQKVIDLVKEYNAQSKDNVIAIMLDTKG 176 (387)
Q Consensus 108 r~TKII~TIGPss~~~----e~i~~Li~aGm~v~RiN~SHg~-----~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~G 176 (387)
.+....+|+|....++ +..+++.++|.+.+.|...|+. .+.-.+.++.+|+.. + ..+.+++|..+
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~---g-~~~~l~vDaN~ 198 (357)
T cd03316 125 DRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAV---G-PDVDLMVDANG 198 (357)
T ss_pred CceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhh---C-CCCEEEEECCC
Confidence 3455667776653233 4566777899999999999886 566667777777542 2 23678888843
No 196
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=40.74 E-value=1.3e+02 Score=25.67 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 303 dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
=+...+++..+.|.++.|.|.=|+. +.+-+...|.+++|| .+.+.-+++-+.+...|+|+-.||.
T Consensus 17 LV~Km~~aA~~kg~~~~I~A~s~~e-----~~~~~~~~DvvLlGP----------Qv~y~~~~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 17 LVTKMKKAAESKGKDVTIEAYSETE-----LSEYIDNADVVLLGP----------QVRYMLKQLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred HHHHHHHHHHhCCCceEEEEechhH-----HHHhhhcCCEEEECh----------HHHHHHHHHHHHhcccCCCeEEeCH
Confidence 4566677777788888888876653 445555899999985 5777789999999999999877764
No 197
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=40.48 E-value=98 Score=28.67 Aligned_cols=71 Identities=6% Similarity=0.124 Sum_probs=0.0
Q ss_pred ccHHHHHhhHhcCCCEEEEc---CCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcCC
Q 016564 277 KDWDDIKFGVDNKVDFYAVS---FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARG 348 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lS---fV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaRG 348 (387)
..+++++.+.+.|+|++++. .-....++..++++......++.++| +=-....+|+.+++.+ +||++||++
T Consensus 129 ~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia-~gGI~s~edi~~~~~~Ga~gvivGsa 203 (217)
T cd00331 129 HDEEELERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVS-ESGISTPEDVKRLAEAGADAVLIGES 203 (217)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEE-EcCCCCHHHHHHHHHcCCCEEEECHH
No 198
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=40.29 E-value=1.4e+02 Score=27.78 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=51.1
Q ss_pred CCCceEEEecC--CCCCC----HHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeee
Q 016564 107 RRKTKIVCTIG--PSTNT----REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVR 180 (387)
Q Consensus 107 ~r~TKII~TIG--Pss~~----~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIR 180 (387)
..++|||.+-= ..+.+ .+.+++|.+.|.++++|-+...+.++..++.+..+++.+......+++.|-=.|.--|
T Consensus 111 ~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SR 190 (224)
T PF01487_consen 111 KGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMGELGRISR 190 (224)
T ss_dssp HTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHH
T ss_pred hCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHH
Confidence 46899999873 11222 3788899999999999999999999999988888887765222235566655554444
Q ss_pred e
Q 016564 181 S 181 (387)
Q Consensus 181 t 181 (387)
+
T Consensus 191 i 191 (224)
T PF01487_consen 191 I 191 (224)
T ss_dssp H
T ss_pred H
Confidence 3
No 199
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=40.28 E-value=2.2e+02 Score=29.35 Aligned_cols=101 Identities=10% Similarity=0.117 Sum_probs=62.3
Q ss_pred CCcccHHHHHhhHh--cCCCEEEE--cCCCCHHHHHHHHHHHHhcCCCceEE-EecCChhhhhcHHHHHhhcCeEEEc--
Q 016564 274 ITEKDWDDIKFGVD--NKVDFYAV--SFVKDAQVVHELKNYLKSCGADIHVI-VKIESADSIPNLHSIITASDGAMVA-- 346 (387)
Q Consensus 274 LTe~D~~dI~~a~~--~gvD~I~l--SfV~sa~dV~~l~~~L~~~g~~i~II-AKIEt~~gv~NL~eIl~~sDGImIa-- 346 (387)
.++.|.+-++..++ .++|+|.+ +.=.|...+..++. +++.-.++.|| -.+-|+++.++|.+ +=+|++-||
T Consensus 105 ~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~-ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIG 181 (346)
T PRK05096 105 TSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAK-AREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIG 181 (346)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 46677888888777 49999876 44445555555553 44444455555 67999999877543 348998764
Q ss_pred CCcccccCCCCc--HHH--HHHHHHHHHHHCCCCc
Q 016564 347 RGDLGAELPIEE--VPL--LQVVFISDIRAMPRMS 377 (387)
Q Consensus 347 RGDLg~elg~e~--v~~--~Qk~II~~c~aaGKp~ 377 (387)
+|-....=-..- +|. +-.+..++|++.|+|+
T Consensus 182 pGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpi 216 (346)
T PRK05096 182 PGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQI 216 (346)
T ss_pred CCccccCccccccChhHHHHHHHHHHHHHHcCCCE
Confidence 444332211111 222 2356667778888886
No 200
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=40.27 E-value=1e+02 Score=31.99 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=56.9
Q ss_pred cHHHHHhhHhcCCCEEEEcCCC---------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEE
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVK---------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAM 344 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~---------sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGIm 344 (387)
+.+|.+.+++.|+|+|.+|.-. +.+-+.++++.+ +.++.|++- -||.+=.+|+++ +|+++
T Consensus 263 ~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~---~~~~~vi~d----GGIr~G~Dv~KALaLGA~~v~ 335 (383)
T cd03332 263 HPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAV---GDRLTVLFD----SGVRTGADIMKALALGAKAVL 335 (383)
T ss_pred CHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh---cCCCeEEEe----CCcCcHHHHHHHHHcCCCEEE
Confidence 4567788999999999999652 233334444333 445677753 355566666655 89999
Q ss_pred EcCCcc-cc----cCCCCc-HHHHHHHHHHHHHHCCCC
Q 016564 345 VARGDL-GA----ELPIEE-VPLLQVVFISDIRAMPRM 376 (387)
Q Consensus 345 IaRGDL-g~----elg~e~-v~~~Qk~II~~c~aaGKp 376 (387)
+||.=| ++ +-|+++ +..++.++-......|..
T Consensus 336 iGr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~ 373 (383)
T cd03332 336 IGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIR 373 (383)
T ss_pred EcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999877 22 112222 344456666666666655
No 201
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=40.21 E-value=1.9e+02 Score=26.18 Aligned_cols=129 Identities=21% Similarity=0.227 Sum_probs=73.6
Q ss_pred eeCCCCCccccccccccccCccccccccccccCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHH-
Q 016564 70 VPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHAS- 148 (387)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~- 148 (387)
.+|+|+.-..|+++|++|.... -++..+.+-++ -+||+..+
T Consensus 5 ~~lT~~g~~~L~~EL~~L~~~~------------------------------r~e~~~~i~~A--------r~~GDl~EN 46 (157)
T PRK01885 5 NYITREGYARLKQELDYLWREE------------------------------RPEVTQKVSWA--------ASLGDRSEN 46 (157)
T ss_pred cccCHHHHHHHHHHHHHHHhhh------------------------------hHHHHHHHHHH--------HHcCCcchh
Confidence 4688888888888888775321 14556666555 24443322
Q ss_pred --------HHHHH-HHHHHHHHhcCCCeeEEEEe---CCCCeeeecCCCCCeEe--cCCCEEEEEecC---CCCCccEEE
Q 016564 149 --------HQKVI-DLVKEYNAQSKDNVIAIMLD---TKGPEVRSGDLPQPITL--TSGQEFTFTIQR---GVGSAECVS 211 (387)
Q Consensus 149 --------~~~~I-~~iR~~~~~~~~~~i~I~lD---L~GPkIRtG~l~~~i~L--k~G~~v~lt~~~---~~g~~~~i~ 211 (387)
.+..+ ..|+++...+. + +..+| ++..+++.|.+ +.| ..|++.++++-. ..-....|+
T Consensus 47 aeY~aAk~~~~~~e~rI~~L~~~L~-~--A~iid~~~~~~~~V~~Gs~---V~l~d~~~~~~~~~iVgp~e~d~~~~~IS 120 (157)
T PRK01885 47 ADYIYGKKRLREIDRRVRFLTKRLE-N--LKVVDYSPQQEGKVFFGAW---VEIENEDGEEKRFRIVGPDEIDGRKGYIS 120 (157)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHc-c--CEEECCCCCCCCEEEeCCE---EEEEECCCCEEEEEEEChHHhCcCCCeEe
Confidence 22233 34666666553 2 33333 34567887764 333 456666665421 111234566
Q ss_pred eccC--CcccccCcCCEEEEe--CCeEEEEEEEEe
Q 016564 212 VNYD--DFVNDVEVGDMLLVD--GGMMSLLVKSKT 242 (387)
Q Consensus 212 v~~~--~l~~~v~~Gd~IliD--DG~I~l~V~~v~ 242 (387)
+..| .-+-.-++||.|-+. +|...++|.++.
T Consensus 121 ~~SPlG~ALlGk~vGd~v~v~~p~g~~~~eI~~I~ 155 (157)
T PRK01885 121 IDSPMARALLKKEVGDEVTVNTPAGEAEWYVNEIE 155 (157)
T ss_pred ccCHHHHHHhCCCCCCEEEEEcCCCcEEEEEEEEE
Confidence 6444 123356899999885 788888888764
No 202
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=40.17 E-value=3.6e+02 Score=26.48 Aligned_cols=100 Identities=13% Similarity=0.014 Sum_probs=57.0
Q ss_pred HHHHHhhHhcCCCEEEEcCC-------CCHHHHHHHHHHHHhcCCCceEEEecC---ChhhhhcHHHHHhh-cCeEEEcC
Q 016564 279 WDDIKFGVDNKVDFYAVSFV-------KDAQVVHELKNYLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV-------~sa~dV~~l~~~L~~~g~~i~IIAKIE---t~~gv~NL~eIl~~-sDGImIaR 347 (387)
.+.++|.++.|+++|++.=- ...|..+-++...+...+++.|++-+- |.++++......+. +|++|+.+
T Consensus 24 ~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34567888999999886533 223333334445555566788888874 34555555554443 78999866
Q ss_pred CcccccCCCCcHHHHHHHHHHHHHHC-CCCcccccc
Q 016564 348 GDLGAELPIEEVPLLQVVFISDIRAM-PRMSSSIKA 382 (387)
Q Consensus 348 GDLg~elg~e~v~~~Qk~II~~c~aa-GKp~g~id~ 382 (387)
-..-- ..- ..+....-..|.+. +.|+.+.+-
T Consensus 104 P~y~~-~~~---~~l~~~f~~ia~a~~~lpv~iYn~ 135 (294)
T TIGR02313 104 PYYNK-PNQ---EALYDHFAEVADAVPDFPIIIYNI 135 (294)
T ss_pred ccCCC-CCH---HHHHHHHHHHHHhccCCCEEEEeC
Confidence 43211 111 23334444455556 677654443
No 203
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=40.03 E-value=1.5e+02 Score=30.66 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=57.6
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHH------HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQ------VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~------dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIaR 347 (387)
+.+|.+.+++.|+|+|.+|.-.-.+ -+..|.+.....+.++.||+- -||.+=-+|+++ +|+++|||
T Consensus 234 ~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~d----GGIr~G~Dv~KALALGA~aV~iGr 309 (367)
T PLN02493 234 TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD----GGVRRGTDVFKALALGASGIFIGR 309 (367)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEe----CCcCcHHHHHHHHHcCCCEEEEcH
Confidence 3667788999999999999874321 233333333333455667754 244444455544 89999999
Q ss_pred Ccc-cccC-CCCc----HHHHHHHHHHHHHHCCC
Q 016564 348 GDL-GAEL-PIEE----VPLLQVVFISDIRAMPR 375 (387)
Q Consensus 348 GDL-g~el-g~e~----v~~~Qk~II~~c~aaGK 375 (387)
.=| +... |.+. +...+.++.......|.
T Consensus 310 ~~l~~l~~~G~~gv~~~l~~l~~el~~~m~l~G~ 343 (367)
T PLN02493 310 PVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGC 343 (367)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 988 5554 3332 33445666666666664
No 204
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=39.24 E-value=3.5e+02 Score=26.54 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=47.3
Q ss_pred HHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEE
Q 016564 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMV 345 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImI 345 (387)
+-++.+.+.|+|++.+|-.- .++..++.+.+++.|-+.-.+..=.| ..+.+..|++.++|.+-
T Consensus 110 ~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY 172 (263)
T CHL00200 110 KFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIY 172 (263)
T ss_pred HHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEE
Confidence 34677888999999999884 57888888888877765544454555 35679999999997654
No 205
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=38.90 E-value=2.1e+02 Score=26.59 Aligned_cols=69 Identities=9% Similarity=0.033 Sum_probs=39.5
Q ss_pred cHHHHHhhHhcCCCEEEEc--CCCCH--HHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcCCcc
Q 016564 278 DWDDIKFGVDNKVDFYAVS--FVKDA--QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDL 350 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lS--fV~sa--~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaRGDL 350 (387)
+.+.++.+.+.|+|+|.+- ...++ +.+.++.+.+++. ..+.+++-.-|.+-+ ...... +|.+.+..+++
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~---~~a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLEEG---LAAQKLGFDFIGTTLSGY 150 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHH---HHHHHcCCCEEEcCCcee
Confidence 4456888899999977653 22233 5666666666653 566677655443322 222222 67776654433
No 206
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=38.73 E-value=93 Score=31.38 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=40.9
Q ss_pred HHHhhHhcCCCEEEEcCCCCH-------HHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh--cCeEEEcCCccc
Q 016564 281 DIKFGVDNKVDFYAVSFVKDA-------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVARGDLG 351 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV~sa-------~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~--sDGImIaRGDLg 351 (387)
..+.+.+.|++.+.+= .|++ .|.+.++++-+.. .++.||+.= .....+...+.++. +||||||||=++
T Consensus 157 ia~~~~~~g~~~ltVH-gRtr~~~y~~~ad~~~I~~vk~~~-~~ipvi~NG-dI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 157 IARILEDAGADALTVH-GRTRAQGYLGPADWDYIKELKEAV-PSIPVIANG-DIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHHHhcCCCEEEEe-cccHHhcCCCccCHHHHHHHHHhC-CCCeEEeCC-CcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 4455667889988873 3332 2344444332221 226666541 11244556667776 899999999876
Q ss_pred ccC
Q 016564 352 AEL 354 (387)
Q Consensus 352 ~el 354 (387)
.-.
T Consensus 234 nP~ 236 (323)
T COG0042 234 NPW 236 (323)
T ss_pred CCc
Confidence 543
No 207
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=38.61 E-value=1.4e+02 Score=28.08 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=42.4
Q ss_pred ccEEEeccC-CcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEE-------ECcEecCCcceee
Q 016564 207 AECVSVNYD-DFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV-------DGGELKSRRHLNV 264 (387)
Q Consensus 207 ~~~i~v~~~-~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~-------~gG~L~s~KgVn~ 264 (387)
...+.+.++ .+.+.+.+|+.|-+|. ++|+|.++.++.+..-+. +=|.++.+..||+
T Consensus 117 ~~~~~i~~~~~~~~~l~~kgSIavdG--vsLTV~~~~~~~f~v~lipeTl~~T~l~~~k~G~~VNl 180 (194)
T PRK09289 117 SVEFRFKAPAELAKYIVEKGSIAVDG--VSLTVNEVDGDRFSVNLIPHTLENTTLGEKKVGDRVNL 180 (194)
T ss_pred cEEEEEECChHHhcccccCCEEEEcc--EEEEEEEEcCCEEEEEEeHHHHhhCccccCCCCCEEEE
Confidence 345566655 4678999999999997 999999999988777664 3356666666775
No 208
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=38.49 E-value=1.7e+02 Score=26.52 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=43.3
Q ss_pred HHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCC
Q 016564 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARG 348 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRG 348 (387)
+.++.+.+.|+|+|.++--.. ++.....+.++..+....+. ++.....+.+.++...+|.+.+..-
T Consensus 70 ~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~--~~~~t~~e~~~~~~~~~d~i~~~~~ 135 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIV--LNPATPLEFLEYVLPDVDLVLLMSV 135 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHHHhhCCEEEEEEE
Confidence 346777799999999876544 44444445566556554443 4444457778888777898887543
No 209
>PLN02979 glycolate oxidase
Probab=38.41 E-value=1.8e+02 Score=30.23 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=58.8
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHH------HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQ------VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~------dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIaR 347 (387)
+.+|.+.+++.|+|+|.+|.-.-.+ -+..+.+.....+.++.||+- -||.+=-+|+++ +|++++||
T Consensus 233 ~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~d----GGIr~G~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 233 TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD----GGVRRGTDVFKALALGASGIFIGR 308 (366)
T ss_pred CHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEe----CCcCcHHHHHHHHHcCCCEEEEcH
Confidence 4667889999999999999874322 233333333333455667653 245555555554 89999999
Q ss_pred Ccc-cccC-CCCc----HHHHHHHHHHHHHHCCCC
Q 016564 348 GDL-GAEL-PIEE----VPLLQVVFISDIRAMPRM 376 (387)
Q Consensus 348 GDL-g~el-g~e~----v~~~Qk~II~~c~aaGKp 376 (387)
.=| +... |.+. +...++++.......|..
T Consensus 309 p~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~ 343 (366)
T PLN02979 309 PVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCR 343 (366)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 988 4443 4332 344456666666666643
No 210
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.26 E-value=1.1e+02 Score=30.77 Aligned_cols=62 Identities=5% Similarity=0.082 Sum_probs=46.8
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhh--hhcHHHHHhh-cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADS--IPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~g--v~NL~eIl~~-sDGImIaR 347 (387)
..+++..+++.|+|.|.+=+. +++++++..+++. .+ ..||---| ++|+.++++. .|.|.+|.
T Consensus 214 tleea~eA~~aGaDiImLDnm-spe~l~~av~~~~---~~----~~lEaSGGIt~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 214 TLAQLETALAHGAQSVLLDNF-TLDMMREAVRVTA---GR----AVLEVSGGVNFDTVRAFAETGVDRISIGA 278 (294)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHhhc---CC----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 467788899999999999998 7888888777663 23 23554443 5688898887 89888764
No 211
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=38.22 E-value=1.4e+02 Score=29.58 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=66.4
Q ss_pred CCCCCCcccHHHHHhhHhcCCCEEEEc---------------CCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhc--
Q 016564 270 TLPSITEKDWDDIKFGVDNKVDFYAVS---------------FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPN-- 332 (387)
Q Consensus 270 ~lp~LTe~D~~dI~~a~~~gvD~I~lS---------------fV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~N-- 332 (387)
....=|+.-++-|.||.++|.+++.+- ......|+.+|.+|-++.|-.+.++..=|+--.+.|
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~ 105 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLE 105 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHH
Confidence 334456677889999999999999992 233578999999999998888888888777222222
Q ss_pred --HHHHHhh-----cCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 333 --LHSIITA-----SDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 333 --L~eIl~~-----sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+++.++. +.||-|+==| -.-..+-....+|++.|.+++..+
T Consensus 106 ~~~~~~f~~~~~~Gv~GvKidF~~----~d~Q~~v~~y~~i~~~AA~~~Lmv 153 (273)
T PF10566_consen 106 KQLDEAFKLYAKWGVKGVKIDFMD----RDDQEMVNWYEDILEDAAEYKLMV 153 (273)
T ss_dssp CCHHHHHHHHHHCTEEEEEEE--S----STSHHHHHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHcCCCEEeeCcCC----CCCHHHHHHHHHHHHHHHHcCcEE
Confidence 3555543 3466553100 022345566789999999998765
No 212
>PRK08005 epimerase; Validated
Probab=38.08 E-value=1.4e+02 Score=28.46 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=54.5
Q ss_pred HHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCC
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI 356 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~ 356 (387)
...|+...++|+|+|.+-+ +...++.++-+++++.|....|..+-+| -++.+..++...|.|+| ++++-|+
T Consensus 71 ~~~i~~~~~~gad~It~H~-Ea~~~~~~~l~~Ik~~G~k~GlAlnP~T--p~~~i~~~l~~vD~Vlv----MsV~PGf 141 (210)
T PRK08005 71 QRWLPWLAAIRPGWIFIHA-ESVQNPSEILADIRAIGAKAGLALNPAT--PLLPYRYLALQLDALMI----MTSEPDG 141 (210)
T ss_pred HHHHHHHHHhCCCEEEEcc-cCccCHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHHhcCEEEE----EEecCCC
Confidence 3456666789999888764 4456777777888888988899999998 56668999999998888 4455554
No 213
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=38.01 E-value=52 Score=26.99 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCCeEecCCCEEEEEecCCCCCccEEEeccCCcccccCcCCE
Q 016564 185 PQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDM 226 (387)
Q Consensus 185 ~~~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~ 226 (387)
++.+.+++|+.++|+..........+.++.-++-..+.+|+.
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~~~l~~g~~ 75 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGISKVLPPGET 75 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEEEEE-TT-E
T ss_pred cCEEEEcCCCeEEEEEEECCCCcEEEEECCCceEEEECCCCE
Confidence 467899999977777654323335566655444455666654
No 214
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=37.97 E-value=1.6e+02 Score=27.31 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 304 V~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
++.+++.|.+.|.++.|-+.-+... ++.++...-.|.|+.+..+ +..+..+-+.|+++|+|.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~ 138 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKF 138 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCE
Confidence 3456677888888877665544443 4567777778888876443 356677889999999997
No 215
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=37.94 E-value=1e+02 Score=28.06 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHH
Q 016564 123 REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNA 161 (387)
Q Consensus 123 ~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~ 161 (387)
.+.+++++++|++.+-+.....+..++.+.++.+++...
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~ 62 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCR 62 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 468999999999999998887776666666666665443
No 216
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=37.81 E-value=1.1e+02 Score=30.79 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=47.5
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh--hcHHHHHhh-cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv--~NL~eIl~~-sDGImIaR 347 (387)
..+....+++.|+|.|.+-+.. +++++++..++. .++ +||---|+ +|+.++++. +|.|.+|.
T Consensus 217 sleea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~---~~~----~ieaSGGI~~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 217 NLDELDQALKAGADIIMLDNFT-TEQMREAVKRTN---GRA----LLEVSGNVTLETLREFAETGVDFISVGA 281 (296)
T ss_pred CHHHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhc---CCe----EEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 4667888999999999999994 788888877653 232 46655544 689999888 89998864
No 217
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=37.81 E-value=83 Score=30.45 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=54.7
Q ss_pred cccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEE
Q 016564 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMV 345 (387)
Q Consensus 276 e~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImI 345 (387)
+.|.+.++.=+++|+||++--++=+++.+.+..+.+.+.|-+++|++=|=-.....++.-+...+ |+-+
T Consensus 147 ~~~~~~L~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~-Gv~v 215 (274)
T cd00537 147 EEDIKRLKRKVDAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLC-GVEI 215 (274)
T ss_pred HHHHHHHHHHHHCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhh-CCCC
Confidence 45667777778899999999999999999999999988887888998886666666776666555 5544
No 218
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=37.66 E-value=1e+02 Score=30.77 Aligned_cols=93 Identities=12% Similarity=0.246 Sum_probs=57.2
Q ss_pred hhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHH
Q 016564 284 FGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQ 363 (387)
Q Consensus 284 ~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Q 363 (387)
.++..|+|..-+ |++. +...-++.|. .+.-|-.=.-...+++-++..+.-.+++.||+| ||.+ +.+....
T Consensus 52 sa~~~GaDL~Hi-FCe~-~Aa~vIKsYs----PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGRd---p~~~k~i 121 (306)
T KOG3974|consen 52 SALRVGADLSHI-FCEP-EAAVVIKSYS----PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGRD---PAILKEI 121 (306)
T ss_pred HHHHhccceeee-eech-hHHHHHhhcC----CceeecccccCCchHhHHHHHHhheeEEEECCC-CCCC---HHHHHHH
Confidence 346678885433 4432 2233344443 344333434445588888888888999999997 4442 2344556
Q ss_pred HHHHHHHHHCCCC-ccccccceec
Q 016564 364 VVFISDIRAMPRM-SSSIKAFYLL 386 (387)
Q Consensus 364 k~II~~c~aaGKp-~g~id~~~~~ 386 (387)
+.|++-|+..++| +-+=||.|++
T Consensus 122 ~~iley~~~~dvP~VIDaDGL~Lv 145 (306)
T KOG3974|consen 122 AKILEYLRGKDVPLVIDADGLWLV 145 (306)
T ss_pred HHHHHHHhcCCCcEEEcCCceEeh
Confidence 7899999999999 4223455554
No 219
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=37.65 E-value=74 Score=23.97 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=23.1
Q ss_pred CcCCEEEEeCCeEEEEEEEEeCCeEEEEEE
Q 016564 222 EVGDMLLVDGGMMSLLVKSKTEDSVKCEVV 251 (387)
Q Consensus 222 ~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~ 251 (387)
++|..|.|+| .|..+|.++.++.++.-+.
T Consensus 7 k~gE~I~Ig~-~I~I~Vl~i~~~~VklgI~ 35 (54)
T PF02599_consen 7 KVGESIVIGD-DIEITVLEISGGQVKLGID 35 (54)
T ss_dssp ETT-EEEETT-TEEEEEEEEETTEEEEEEE
T ss_pred cCCCEEEECC-CEEEEEEEEcCCEEEEEEE
Confidence 7899999987 7999999999888876443
No 220
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=37.50 E-value=2.8e+02 Score=26.05 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=41.6
Q ss_pred HHHHHhhHhcCCCEEEEcCCC---CHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcCCccc
Q 016564 279 WDDIKFGVDNKVDFYAVSFVK---DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLG 351 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~---sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaRGDLg 351 (387)
.+++..+.+.|+|+|.+ |-. ..+.+..++..+ ..+++++|-= -. ..+|+.+.+++ +|++-++.+=..
T Consensus 114 ~~E~~~A~~~Gad~vk~-Fpa~~~G~~~l~~l~~~~---~~~ipvvaiG-GI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 114 PTEAFAALRAGAQALKL-FPASQLGPAGIKALRAVL---PPDVPVFAVG-GV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHHHHHHcCCCEEEE-CCCCCCCHHHHHHHHhhc---CCCCeEEEEC-CC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 34577888999999987 332 344444444433 2246666531 00 33899999988 888887654333
No 221
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=37.49 E-value=88 Score=29.69 Aligned_cols=54 Identities=20% Similarity=0.455 Sum_probs=40.6
Q ss_pred EEEeccC-CcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEE-------ECcEecCCcceee
Q 016564 209 CVSVNYD-DFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV-------DGGELKSRRHLNV 264 (387)
Q Consensus 209 ~i~v~~~-~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~-------~gG~L~s~KgVn~ 264 (387)
.+.+..+ .+.+.+..||.|-+|. ++|+|.++.++.+...+. +=|.++.+.-||+
T Consensus 23 ~l~i~~~~~~~~~l~~g~SIavnG--VcLTV~~v~~~~f~~~lipeTl~~T~l~~~~~G~~VNl 84 (206)
T PRK13020 23 TLEIAFPPELLEGLEIGASVAVNG--VCLTVTKIEGDRVFFDVMEETLRLTNLADLRVGDRVNI 84 (206)
T ss_pred EEEEEeChhHhccCCCCCEEEECC--EEEEEEEECCCEEEEEEhHHHHhhCchhhccCCCEEee
Confidence 3444444 4668999999999997 999999999998877764 3355566666775
No 222
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=37.34 E-value=1.1e+02 Score=25.43 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=31.1
Q ss_pred HHHHhhHhcCCCEEEEcCC--CCHHHHHHHHHHHHhcCC-CceEE
Q 016564 280 DDIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGA-DIHVI 321 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV--~sa~dV~~l~~~L~~~g~-~i~II 321 (387)
+.++.+.+.++|+|.+|.. .+..++.++.+.+++.+. ++.|+
T Consensus 41 ~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~ 85 (119)
T cd02067 41 EIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVL 85 (119)
T ss_pred HHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEE
Confidence 3456778899999999985 567777777777777765 55544
No 223
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=37.32 E-value=97 Score=35.83 Aligned_cols=136 Identities=21% Similarity=0.223 Sum_probs=79.0
Q ss_pred CCCCceeeCCCCCccccccccccccCccccccccccccCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCC
Q 016564 64 RVEPEVVPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSH 143 (387)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SH 143 (387)
+.+...+++++|.-++|.+++++|.... -++..+++-.| -+|
T Consensus 744 ~~~~~~~~lT~eg~~kL~~EL~~L~~v~------------------------------Rpei~~~I~~A--------r~~ 785 (906)
T PRK14720 744 RVPEIGFLVTRRALNKKKKELEHLKDVE------------------------------MPENSKDIGEA--------QEL 785 (906)
T ss_pred CCCCCCceeCHHHHHHHHHHHHHHHHhh------------------------------HHHHHHHHHHH--------HhC
Confidence 3445557999999999999999887433 14555555555 456
Q ss_pred CCHHH----------HHHHHHHHHHHHHhcCCCeeEEEEeC---CCCeeeecCCCCCeEe---cCCCEEEEEec---CCC
Q 016564 144 GDHAS----------HQKVIDLVKEYNAQSKDNVIAIMLDT---KGPEVRSGDLPQPITL---TSGQEFTFTIQ---RGV 204 (387)
Q Consensus 144 g~~e~----------~~~~I~~iR~~~~~~~~~~i~I~lDL---~GPkIRtG~l~~~i~L---k~G~~v~lt~~---~~~ 204 (387)
|+..+ ..++-..+++..+.+.. +-.+|. +..+++.|.. +.| ..|++.++++- +..
T Consensus 786 GDLsENaEY~aAKe~q~~le~RI~eLe~~L~~---A~IId~~~~~~d~V~~GS~---Vtl~d~d~~ee~ty~IVGp~EaD 859 (906)
T PRK14720 786 GDLRENAEYKAAKEKQQQLQAALKRLEAEIDS---AKILDLTDVKTSKVGFGTK---VKLKNEDTGEEESYSILGPWESD 859 (906)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHhc---CEEeCcccCCCCEEEeCCE---EEEEECCCCCEEEEEEEChhhcC
Confidence 65443 22333346666665542 222343 3457777754 334 34665544432 111
Q ss_pred CCccEEEeccC--CcccccCcCCEEEEe--CCeEEEEEEEEeC
Q 016564 205 GSAECVSVNYD--DFVNDVEVGDMLLVD--GGMMSLLVKSKTE 243 (387)
Q Consensus 205 g~~~~i~v~~~--~l~~~v~~Gd~IliD--DG~I~l~V~~v~~ 243 (387)
.....|++..| .-+=.-++||.|-+. +|...++|.++..
T Consensus 860 ~~~g~IS~~SPLGkALLGkkvGD~V~v~~P~g~~~yeIl~I~~ 902 (906)
T PRK14720 860 PEEGIISYQSPLGKSLLGKKEGDSLEFVINDTETRYTVLKIER 902 (906)
T ss_pred cCCCeECCCCHHHHHHcCCCCCCEEEEEECCceEEEEEEEEEe
Confidence 12334555444 122356899999875 7889999988764
No 224
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=37.01 E-value=2.7e+02 Score=27.18 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=48.1
Q ss_pred HHHHhhHhcCCCEEEEcCC------CCHHHHHHHHH-HHHhcCCCceEEEecC---ChhhhhcHHHHHhh-cCeEEEcCC
Q 016564 280 DDIKFGVDNKVDFYAVSFV------KDAQVVHELKN-YLKSCGADIHVIVKIE---SADSIPNLHSIITA-SDGAMVARG 348 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV------~sa~dV~~l~~-~L~~~g~~i~IIAKIE---t~~gv~NL~eIl~~-sDGImIaRG 348 (387)
+.+++.++.|+|+|++.-. =|.++-.++-+ ..+..+ . |++-+- |.++++-...-.+. +|++|+.+-
T Consensus 24 ~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P 100 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K--VIFQVGSLNLEESIELARAAKSFGIYAIASLPP 100 (279)
T ss_pred HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3456778889999887422 24444444433 333332 2 677664 34444444443333 789998655
Q ss_pred cccccCCCCcHHHHHHHHHHHHHHCCCCccccc
Q 016564 349 DLGAELPIEEVPLLQVVFISDIRAMPRMSSSIK 381 (387)
Q Consensus 349 DLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id 381 (387)
.......-+.+...-+.|.. ..|+.+.+
T Consensus 101 ~y~~~~~~~~i~~yf~~v~~-----~lpv~iYn 128 (279)
T cd00953 101 YYFPGIPEEWLIKYFTDISS-----PYPTFIYN 128 (279)
T ss_pred cCCCCCCHHHHHHHHHHHHh-----cCCEEEEe
Confidence 43221122333333344444 56764444
No 225
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.00 E-value=1.1e+02 Score=29.03 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=56.8
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCc--------ccccCCCC--cHH
Q 016564 291 DFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGD--------LGAELPIE--EVP 360 (387)
Q Consensus 291 D~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGD--------Lg~elg~e--~v~ 360 (387)
-.|.+=...++++...+.+.+.+.|-++-= .-.-|+.+++.+.++.+..+.++||-|= .+.+.|.+ -.|
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iE-itl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLE-VTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEE-EecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 345555567788887777777665543211 2267788888888887766566666442 22222221 123
Q ss_pred HHHHHHHHHHHHCCCCcccccccee
Q 016564 361 LLQVVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 361 ~~Qk~II~~c~aaGKp~g~id~~~~ 385 (387)
..-..+++.|++++.+. +-|.++
T Consensus 95 ~~~~~vi~~a~~~~i~~--iPG~~T 117 (212)
T PRK05718 95 GLTPPLLKAAQEGPIPL--IPGVST 117 (212)
T ss_pred CCCHHHHHHHHHcCCCE--eCCCCC
Confidence 34468999999999997 655543
No 226
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=36.91 E-value=71 Score=31.09 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCceeEeec-CC------CC-HHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeee
Q 016564 123 REMIWKLAEAGMNVARLNM-SH------GD-HASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVR 180 (387)
Q Consensus 123 ~e~i~~Li~aGm~v~RiN~-SH------g~-~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIR 180 (387)
.+..++++++|+++.=+|. |- -+ .+++.++...++.+.+.. .++|++|+.-|++=
T Consensus 26 ~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~---~~plsiDT~~~~vi 88 (257)
T TIGR01496 26 VAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP---DVPISVDTYRAEVA 88 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC---CCeEEEeCCCHHHH
Confidence 4678888999999999984 22 12 336666777777665432 36799999888643
No 227
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=36.76 E-value=68 Score=31.41 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=50.2
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEE
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMV 345 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImI 345 (387)
.|.+.++.=+++|+||++--++=+++.+..+.+.+...|.+++|++=|=-..+..++.-+...+ ||-|
T Consensus 160 ~~~~~l~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~~-Gv~i 227 (287)
T PF02219_consen 160 AELKRLKKKIDAGADFIITQPFFDAEAFERFLDRLREAGIDVPIIPGIMPLTSAKSARFLAKLC-GVDI 227 (287)
T ss_dssp HHHHHHHHHHHTTESEEEEEE-SSHHHHHHHHHHHHHTTHTSEEEEEEE-HCCHHHHHHHHHHH-T-EE
T ss_pred HHHHHHHHHHHCCCCEEeccccCCHHHHHHHHHHHHHcCCCCcEEEEEeccCCHHHHHHHHhcc-CccC
Confidence 3455666668899999999999999999999999988887888887765555555555555555 6655
No 228
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=36.61 E-value=1.3e+02 Score=28.52 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=41.5
Q ss_pred HHhhHhcCCCEEEEcCCCCHHH--------HHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEc
Q 016564 282 IKFGVDNKVDFYAVSFVKDAQV--------VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVA 346 (387)
Q Consensus 282 I~~a~~~gvD~I~lSfV~sa~d--------V~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIa 346 (387)
...|.+.|+||| .|||...+| ++++.++++..+.+.+|++- +++|.++++++ +|.+-+.
T Consensus 115 a~~Aa~aGa~yi-spyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaA-----S~r~~~~v~~~~~~G~d~vTip 185 (213)
T TIGR00875 115 ALLAAKAGATYV-SPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAA-----SVRHPRHVLEAALIGADIATMP 185 (213)
T ss_pred HHHHHHcCCCEE-EeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEe-----ccCCHHHHHHHHHcCCCEEEcC
Confidence 345677899955 588887766 66777788777778887753 66777777764 6666653
No 229
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=36.61 E-value=6.2e+02 Score=27.91 Aligned_cols=87 Identities=7% Similarity=-0.036 Sum_probs=53.4
Q ss_pred HhhHhcCCCEEEE----c----CCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcCCccccc
Q 016564 283 KFGVDNKVDFYAV----S----FVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGAE 353 (387)
Q Consensus 283 ~~a~~~gvD~I~l----S----fV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaRGDLg~e 353 (387)
+.++..|+--++. | -+.+++.+....+..+...-++..+.+.-+ ..++.+.+.+++ +.|+-+- .|-
T Consensus 149 ~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pvN~g~~gkG~~-s~~aeL~eli~aGA~GfKi~-ed~--- 223 (569)
T PRK13308 149 DHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPVNFGFLGRGNS-SKPAALIEQVEAGACGLKIH-EDW--- 223 (569)
T ss_pred HHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCccEEEEcCCcc-cCHHHHHHHHHCCCCEEeec-CCC---
Confidence 6678889988875 3 355677777766555433335556666533 334556666544 4555543 222
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 354 LPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 354 lg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+. .+....++++.|+++|+++
T Consensus 224 -g~--t~~~i~~aL~~A~~~dv~V 244 (569)
T PRK13308 224 -GA--MPAAIDTCLEVADEYDFQV 244 (569)
T ss_pred -CC--CHHHHHHHHHHHHhcCCEE
Confidence 22 3566778888899999886
No 230
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=36.60 E-value=1.2e+02 Score=28.09 Aligned_cols=50 Identities=8% Similarity=0.053 Sum_probs=38.0
Q ss_pred HhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhc
Q 016564 283 KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPN 332 (387)
Q Consensus 283 ~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~N 332 (387)
+.+.+.|+|+|.+..--..+.+..+.+++++.|....+..+.+++.+++.
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~ 123 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEF 123 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Confidence 55678999999999986667788888888777776666777777666664
No 231
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=36.57 E-value=83 Score=29.42 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHhCCceeEeecCCCC-----------HHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q 016564 121 NTREMIWKLAEAGMNVARLNMSHGD-----------HASHQKVIDLVKEYNAQSKDNVIAIMLDTKGP 177 (387)
Q Consensus 121 ~~~e~i~~Li~aGm~v~RiN~SHg~-----------~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GP 177 (387)
...+.++.|-..|+|..||-+.... ...+..+-+.|+.+.+ +-+.+++|+-+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~----~gi~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQA----YGIYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHH----TT-EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHh----CCCeEEEEeccC
Confidence 5578999999999999999999622 2244444445555443 337788898774
No 232
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=36.57 E-value=2.9e+02 Score=25.24 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=43.5
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCC
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARG 348 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRG 348 (387)
++....+.+..+.+.|+|+|.++.-.+.+.... .+.+...+. .+..-+......+.+.++...+|.+.++.-
T Consensus 69 ~v~d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~-~~~~~~~~~--~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~ 140 (220)
T PRK05581 69 MVENPDRYVPDFAKAGADIITFHVEASEHIHRL-LQLIKSAGI--KAGLVLNPATPLEPLEDVLDLLDLVLLMSV 140 (220)
T ss_pred eeCCHHHHHHHHHHcCCCEEEEeeccchhHHHH-HHHHHHcCC--EEEEEECCCCCHHHHHHHHhhCCEEEEEEE
Confidence 333334456667789999999998776433333 344444443 344445322346667788777897777543
No 233
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=36.53 E-value=1.1e+02 Score=26.82 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=32.0
Q ss_pred HHHHhhHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCC-CceEE
Q 016564 280 DDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGA-DIHVI 321 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSf--V~sa~dV~~l~~~L~~~g~-~i~II 321 (387)
+-++.+.+.++|.|.+|- ..+...+.++.+.|++.|- +++|+
T Consensus 41 ~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vi 85 (128)
T cd02072 41 EFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLY 85 (128)
T ss_pred HHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEE
Confidence 356778889999999998 4567788888888888764 55555
No 234
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=36.05 E-value=1.5e+02 Score=31.00 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=47.2
Q ss_pred HHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcC
Q 016564 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVAR 347 (387)
Q Consensus 282 I~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaR 347 (387)
++.+.++|+|++.+...-+.+.+.+..+.+++.|..+.+ -.+.....++.+.++....|.|++.+
T Consensus 243 v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgV-D~lnp~tp~e~i~~l~~~vD~Vllht 307 (391)
T PRK13307 243 ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSIL-DMLNVEDPVKLLESLKVKPDVVELHR 307 (391)
T ss_pred HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEE-EEcCCCCHHHHHHHhhCCCCEEEEcc
Confidence 556778999999999987777888888888877644333 14444445566777766689888775
No 235
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.55 E-value=1.1e+02 Score=30.94 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=35.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHH
Q 016564 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKE 158 (387)
Q Consensus 108 r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~ 158 (387)
+++|+.+-+=|...+.+.++...++|++++|+-+.-...+...+.++.+|+
T Consensus 76 ~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~ 126 (337)
T PRK08195 76 KQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARE 126 (337)
T ss_pred CCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHH
Confidence 467777655466667889999999999999987643333444445555443
No 236
>cd00728 malate_synt_G Malate synthase G (MSG), monomeric enzyme present in some bacteria. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=35.50 E-value=1.1e+02 Score=34.07 Aligned_cols=96 Identities=10% Similarity=0.003 Sum_probs=63.9
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHhc-------CCCceEEEecCChhhhhcHHHHHhhc-C---eEEEcCCc-------
Q 016564 288 NKVDFYAVSFVKDAQVVHELKNYLKSC-------GADIHVIVKIESADSIPNLHSIITAS-D---GAMVARGD------- 349 (387)
Q Consensus 288 ~gvD~I~lSfV~sa~dV~~l~~~L~~~-------g~~i~IIAKIEt~~gv~NL~eIl~~s-D---GImIaRGD------- 349 (387)
.|.=||..|+.++++++.--.++.... ...+++-.+|||..+--|++||+.+. | ||=-||=|
T Consensus 380 ~GsiYfykPKmegp~Ea~fwndlF~~~Ed~LGLp~gTIKa~VmiEe~~asfnl~Eii~elrdrv~fiNtGrwDytfs~I~ 459 (712)
T cd00728 380 TGSIYIVKPKMHGPEEVAFANELFSRVEDLLGLPQNTIKMGIMDEERRTSVNLKECIRAARDRVVFINTGFLDRTGDEIH 459 (712)
T ss_pred CCCeeEEecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeeccHhhhhHHHHHHHHHhheeecccCchhhhhhHHH
Confidence 456699999999999998765544321 24689999999999999999999872 3 22223322
Q ss_pred -------ccccC---CCCcHHHHHHHHHHH---HHHCCCCccccc-ccee
Q 016564 350 -------LGAEL---PIEEVPLLQVVFISD---IRAMPRMSSSIK-AFYL 385 (387)
Q Consensus 350 -------Lg~el---g~e~v~~~Qk~II~~---c~aaGKp~g~id-~~~~ 385 (387)
+-..- ...-+..+.+..+.. |...|+.. |- |+|.
T Consensus 460 t~~~ag~~v~k~~~m~~p~m~AYe~~nV~~gl~Ch~rG~aa--IGkGMwA 507 (712)
T cd00728 460 TSMEAGPMARKADMKSSPWIGAYEDNNVDIGLAAGLSGKAQ--IGKGMWA 507 (712)
T ss_pred HHhhCccchhhhcccccHHHHHHHHHHHHHhHhhcCCCchh--hcCChhh
Confidence 11100 111233444677777 99999887 66 6653
No 237
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=35.41 E-value=86 Score=28.85 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=37.3
Q ss_pred HHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCCh
Q 016564 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESA 327 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~ 327 (387)
+.++.++. .+|+|+.|.+-.-+.++.+...|.....+..++.-.|+.
T Consensus 49 ~~~~~aia-~ADii~~smlF~ed~v~~l~~~L~~~r~~~~a~i~~~sa 95 (164)
T PF11965_consen 49 EECEAAIA-RADIIFGSMLFIEDHVRPLLPALEARRDHCPAMIIFESA 95 (164)
T ss_pred HHHHHHHH-hCCEEEeehhhhHHHHHHHHHHHHHHHccCCEEEEEcCH
Confidence 55566665 789999999999999999999998776666666666663
No 238
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=35.28 E-value=2.3e+02 Score=25.74 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=42.8
Q ss_pred HHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCCh-hhhhcHHHHHh-hcCeEEEcCC
Q 016564 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESA-DSIPNLHSIIT-ASDGAMVARG 348 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~-~gv~NL~eIl~-~sDGImIaRG 348 (387)
.++.+.++|+|+|.+++......+.++.++.++.| +++++-+-++ .-.+.+....+ -+|.+.+.+|
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg 135 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTG 135 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCC
Confidence 57778899999999988876666777777777654 4555443222 12233344444 3788877664
No 239
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=35.20 E-value=1.8e+02 Score=22.11 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=40.6
Q ss_pred CCeEecCCCEEEEEecCC-CCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEe---CCeEEEEEEEC
Q 016564 186 QPITLTSGQEFTFTIQRG-VGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKT---EDSVKCEVVDG 253 (387)
Q Consensus 186 ~~i~Lk~G~~v~lt~~~~-~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~---~d~v~c~V~~g 253 (387)
..+.++.|+.+.|+..-. .......|.-....+.. ...-.+..+++.-.|.+..+. .+...|.+.+.
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS-SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES-SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceee-eeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 568899999999987632 22223333322221111 223345556788888887764 46799999876
No 240
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.17 E-value=2.9e+02 Score=29.02 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=47.0
Q ss_pred CcccHHHHHhhHhcCCCEEE--EcCCCCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhcHHHHHhhcCeEEEcC
Q 016564 275 TEKDWDDIKFGVDNKVDFYA--VSFVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVAR 347 (387)
Q Consensus 275 Te~D~~dI~~a~~~gvD~I~--lSfV~sa~dV~~l~~~L~~~g~~i~IIA-KIEt~~gv~NL~eIl~~sDGImIaR 347 (387)
++.+.+.++.+++.|+|+|+ .+.-.+ +.+.++-+.+++.-.+..||+ -|-|.++..++.+. =+|+|.+|=
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~~-~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~ 223 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGHS-TRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--GADCLKVGI 223 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCC-hhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--CCCEEEECC
Confidence 45567888889999999999 444333 344444445555444565654 79998888777652 489998763
No 241
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=35.09 E-value=1.9e+02 Score=26.78 Aligned_cols=63 Identities=8% Similarity=-0.020 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCceEEEecCChhh-hhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 305 HELKNYLKSCGADIHVIVKIESADS-IPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 305 ~~l~~~L~~~g~~i~IIAKIEt~~g-v~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+.+++.|.+.|.++.|.+.-|.... .++.++++...|.|+.+..+ ......+-+.|+++++|.
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~ 141 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPF 141 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCE
Confidence 4566778888888887776565532 46778888888888765321 446667889999999997
No 242
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.96 E-value=1.1e+02 Score=28.84 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=46.1
Q ss_pred HHHHHhhHhcCCCEEEEcCCCC-----HHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh--cCeEEEcCCc
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKD-----AQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA--SDGAMVARGD 349 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~s-----a~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~--sDGImIaRGD 349 (387)
.+.++.+.+.|+|+|.++-+.. .-+...++++... .++++++- |-+++ ++.++++. +||+|+||.-
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~--~~~pvia~GGi~~~~---di~~~l~~~g~dgv~vg~al 226 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA--VNIPVIASGGAGKPE---HFVEAFEEGGADAALAASIF 226 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh--CCCCEEEeCCCCCHH---HHHHHHHhCCCCEEEEeHHH
Confidence 3455677789999999976543 1123333333322 24555553 44443 34444554 8999999998
Q ss_pred ccccCCCCcH
Q 016564 350 LGAELPIEEV 359 (387)
Q Consensus 350 Lg~elg~e~v 359 (387)
..-.+.++++
T Consensus 227 ~~~~~~~~~~ 236 (243)
T cd04731 227 HFGEYTIAEL 236 (243)
T ss_pred HcCCCCHHHH
Confidence 8888776543
No 243
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=34.92 E-value=2.3e+02 Score=22.50 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=38.4
Q ss_pred CCCHHHHHHHH-HhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCC
Q 016564 120 TNTREMIWKLA-EAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTK 175 (387)
Q Consensus 120 s~~~e~i~~Li-~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~ 175 (387)
+.+-|.+..++ ..|+.++|-+-++|......++++.+++ ++.++|..|-+
T Consensus 19 s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~------G~~~~itpDGP 69 (74)
T PF04028_consen 19 SRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKE------GYSIAITPDGP 69 (74)
T ss_pred CcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHC------CCeEEEeCCCC
Confidence 56677776655 4699999999999988888888877752 45688888854
No 244
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=34.80 E-value=2.1e+02 Score=29.04 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=47.2
Q ss_pred CCceEEEecCCCCC--------C----------HHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeE
Q 016564 108 RKTKIVCTIGPSTN--------T----------REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIA 169 (387)
Q Consensus 108 r~TKII~TIGPss~--------~----------~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~ 169 (387)
|++-+..||||-.. + .|.++.|++.|+|++-|-.-. +..+.+..+.-+|+..++.+ ..++
T Consensus 113 k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~-D~l~~KaA~~a~~~~~~~~~-~~LP 190 (311)
T COG0646 113 KPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIF-DTLNAKAAVFAAREVFEELG-VRLP 190 (311)
T ss_pred CceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhc-cHHHHHHHHHHHHHHHHhcC-Cccc
Confidence 78889999999763 1 378899999999999998875 46677778888888877554 3344
Q ss_pred EE
Q 016564 170 IM 171 (387)
Q Consensus 170 I~ 171 (387)
||
T Consensus 191 v~ 192 (311)
T COG0646 191 VM 192 (311)
T ss_pred EE
Confidence 44
No 245
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=34.80 E-value=1.5e+02 Score=27.87 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 303 dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
-+..+++.+.+.+.++.|-+--+.. .-+|+++++.-.|.|+.+-.+ +.....+-+.|+++++|. |++
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~----------~~~r~~l~~~~~~~~ip~--i~~ 142 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDN----------FATRYLINDACVKLGKPL--VSG 142 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCE--EEE
Confidence 4446667788878777655543333 347888888888988876443 245667889999999997 554
No 246
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=34.59 E-value=1.3e+02 Score=26.49 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=32.9
Q ss_pred HHHhhHhcCCCEEEEcCC--CCHHHHHHHHHHHHhcCC-CceEE--EecCChh
Q 016564 281 DIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGA-DIHVI--VKIESAD 328 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV--~sa~dV~~l~~~L~~~g~-~i~II--AKIEt~~ 328 (387)
.+..+.+.++|+|++|+. .+...+.++.+.|.+.+. +++|+ -.|.+..
T Consensus 46 i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~ 98 (137)
T PRK02261 46 FIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGK 98 (137)
T ss_pred HHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCc
Confidence 456678899999999995 456677777777777643 45443 4565543
No 247
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=34.50 E-value=1e+02 Score=28.92 Aligned_cols=55 Identities=15% Similarity=0.340 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCceeEeecCC--------CCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeee
Q 016564 124 EMIWKLAEAGMNVARLNMSH--------GDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVR 180 (387)
Q Consensus 124 e~i~~Li~aGm~v~RiN~SH--------g~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIR 180 (387)
+..++++++|++++=||.-- ...+++.+++..++...+.. ..++|.+|+.-|++=
T Consensus 23 ~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~--~~~plSIDT~~~~v~ 85 (210)
T PF00809_consen 23 KRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREEN--PDVPLSIDTFNPEVA 85 (210)
T ss_dssp HHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHH--TTSEEEEEESSHHHH
T ss_pred HHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccC--CCeEEEEECCCHHHH
Confidence 36788999999999999643 23457777777777766422 237899999877643
No 248
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=34.49 E-value=1.6e+02 Score=27.58 Aligned_cols=88 Identities=15% Similarity=0.308 Sum_probs=57.3
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHh------hcCeEEEcCCcc
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT------ASDGAMVARGDL 350 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~------~sDGImIaRGDL 350 (387)
+|.+|++.+++...+++++=+- +.-++.++..+++..|.. ++.-+.=.+|+.|=+.-++ ..|||+=
T Consensus 11 ~~~~~le~~les~~~~vflL~~-~i~~ik~ivk~lK~~gK~--vfiHvDLv~Gl~~~e~~i~fi~~~~~pdGIIS----- 82 (181)
T COG1954 11 RDNKDLEKALESESQYVFLLTG-HILNIKEIVKKLKNRGKT--VFIHVDLVEGLSNDEVAIEFIKEVIKPDGIIS----- 82 (181)
T ss_pred hhHHHHHHHhcCCCeEEEEEec-hhhhHHHHHHHHHhCCcE--EEEEeHHhcccCCchHHHHHHHHhccCCeeEE-----
Confidence 5788999999999999888765 333555555566655543 5555655666665444333 2789884
Q ss_pred cccCCCCcHHHHHHHHHHHHHHCCCCcccccccee
Q 016564 351 GAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 351 g~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~~ 385 (387)
....++..|+++|.++ |-=.|.
T Consensus 83 -----------Tk~~~i~~Akk~~~~a--IqR~Fi 104 (181)
T COG1954 83 -----------TKSNVIKKAKKLGILA--IQRLFI 104 (181)
T ss_pred -----------ccHHHHHHHHHcCCce--eeeeee
Confidence 3456777777877776 554443
No 249
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=34.46 E-value=1.7e+02 Score=28.22 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=50.7
Q ss_pred HHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC--CceEEEecCChhhhhcHHHHHhhcCeEEE
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA--DIHVIVKIESADSIPNLHSIITASDGAMV 345 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~--~i~IIAKIEt~~gv~NL~eIl~~sDGImI 345 (387)
.+.++...+.|+|+|.+-+ ++..++.+.-+++++.|. ...+.-+=+| .++.++.++...|.|+|
T Consensus 81 ~~~i~~~~~aGad~It~H~-Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~VLi 146 (228)
T PRK08091 81 FEVAKACVAAGADIVTLQV-EQTHDLALTIEWLAKQKTTVLIGLCLCPET--PISLLEPYLDQIDLIQI 146 (228)
T ss_pred HHHHHHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCCCCceEEEEECCCC--CHHHHHHHHhhcCEEEE
Confidence 3456666789999888764 445677777788888888 7788888888 56889999999998888
No 250
>TIGR03425 urea_degr_2 urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=34.42 E-value=1.1e+02 Score=29.64 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=34.6
Q ss_pred CeEecCCCEEEEEecCCCCCccEEEeccCCcc--------------cccCcCCEEEEeCCeEEEEEEE
Q 016564 187 PITLTSGQEFTFTIQRGVGSAECVSVNYDDFV--------------NDVEVGDMLLVDGGMMSLLVKS 240 (387)
Q Consensus 187 ~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~--------------~~v~~Gd~IliDDG~I~l~V~~ 240 (387)
...|+.||.++|+.-.+.-....+..|.++.. -.+++|+.++-|.|+..++|++
T Consensus 14 s~~v~rGq~lri~d~~G~q~~d~~~~na~d~~Er~n~~dT~k~q~~~~l~~G~~L~Sd~gRpm~sIv~ 81 (233)
T TIGR03425 14 SKVLRRGTRLRLTDLEGGANVSLLLYNADAPLERYNMADTLKVQWTAYLTKGHVLLSDMGRVLASIVE 81 (233)
T ss_pred EEEECCCCEEEEEeCCCCeEeeeEEecCCCcccccCHHHHHHHhCCeeccCCCEeEeCCCcceEEEEc
Confidence 36789999999986443211112222322211 2467999999999999988875
No 251
>COG0307 RibC Riboflavin synthase alpha chain [Coenzyme metabolism]
Probab=34.33 E-value=1.2e+02 Score=28.95 Aligned_cols=51 Identities=29% Similarity=0.498 Sum_probs=41.2
Q ss_pred ccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEE-------ECcEecCCcceeeC
Q 016564 213 NYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVV-------DGGELKSRRHLNVR 265 (387)
Q Consensus 213 ~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~-------~gG~L~s~KgVn~p 265 (387)
..+..+++++.||.|.++. ++|+|++..++.+.+.|- +=|.++....||+.
T Consensus 25 ~~~~~~~d~~lGdSIAvnG--vCLTVt~~~~~~f~~dv~~ETl~~TnL~~~~~G~~VNLE 82 (204)
T COG0307 25 SAKLILEDVKLGDSIAVNG--VCLTVTEFNEDGFSVDVMPETLRRTNLGDLKVGDKVNLE 82 (204)
T ss_pred ecccccccCccCCeEEECC--EEEEEEEECCCcEEEEecHHHhhhcchhhcccCCEEeee
Confidence 3356788999999999987 999999999999988874 45666666677763
No 252
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=34.25 E-value=2.2e+02 Score=26.52 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=35.6
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCH---------HHHHHHHHHHHh-cCCCceEEEecCChhh---hhcHHHHHhh-cCeE
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDA---------QVVHELKNYLKS-CGADIHVIVKIESADS---IPNLHSIITA-SDGA 343 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa---------~dV~~l~~~L~~-~g~~i~IIAKIEt~~g---v~NL~eIl~~-sDGI 343 (387)
+.+.++.+...|+|+|.+=.=.+. .++.++-..+.. .+....+++.|-..+. .+++. .+.. .|||
T Consensus 10 ~~~~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~-~l~~g~~gI 88 (221)
T PF03328_consen 10 SPKMLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLE-ALDAGADGI 88 (221)
T ss_dssp SHHHHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHH-HHHTTSSEE
T ss_pred CHHHHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhh-hcccCCCee
Confidence 344556666778888877665555 455444443333 2234566676644332 33344 3333 6677
Q ss_pred EE
Q 016564 344 MV 345 (387)
Q Consensus 344 mI 345 (387)
|+
T Consensus 89 ~l 90 (221)
T PF03328_consen 89 VL 90 (221)
T ss_dssp EE
T ss_pred ec
Confidence 76
No 253
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=34.16 E-value=1.1e+02 Score=25.81 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=30.1
Q ss_pred HHHHhhHhcCCCEEEEcCCC--CHHHHHHHHHHHHhcCC-CceEEEe
Q 016564 280 DDIKFGVDNKVDFYAVSFVK--DAQVVHELKNYLKSCGA-DIHVIVK 323 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~--sa~dV~~l~~~L~~~g~-~i~IIAK 323 (387)
+-+..+.+.++|+|++|+.. ..+.+.++.+.|++.+. ++.+++=
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred HHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 34567788999999999874 45556666666666654 5555543
No 254
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=34.16 E-value=67 Score=30.67 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=45.1
Q ss_pred HHHhhHhcCCCEEEEcCCCC-----HHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHh-------hcCeEEEcCC
Q 016564 281 DIKFGVDNKVDFYAVSFVKD-----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT-------ASDGAMVARG 348 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV~s-----a~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~-------~sDGImIaRG 348 (387)
.++...+.|++.+.+--+.. .-|...+++.... .+++||+- -|+.+++++.+ -+||+|+||+
T Consensus 151 ~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~--~~ipvias----GGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 151 VLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR--TDAPVVAS----GGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred HHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh--CCCCEEEe----CCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 35556778999887765532 1245555544432 25677773 23444444433 2799999999
Q ss_pred cccccCCCCcH
Q 016564 349 DLGAELPIEEV 359 (387)
Q Consensus 349 DLg~elg~e~v 359 (387)
=+.-.+++++.
T Consensus 225 ~~~g~~~~~~~ 235 (241)
T PRK14024 225 LYAGAFTLPEA 235 (241)
T ss_pred HHcCCCCHHHH
Confidence 88888877654
No 255
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=34.03 E-value=1.6e+02 Score=26.91 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=40.0
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh-cCeEEEcCC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDGAMVARG 348 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~-sDGImIaRG 348 (387)
..+++..+.+.|+|+|.+ |-.++.-...++. +.+...+++++|- | | .+|+.+.+++ +|++-++..
T Consensus 106 t~~e~~~A~~~Gad~i~~-~p~~~~g~~~~~~-l~~~~~~~p~~a~GGI-~---~~n~~~~~~~G~~~v~v~s~ 173 (190)
T cd00452 106 TPTEIMQALELGADIVKL-FPAEAVGPAYIKA-LKGPFPQVRFMPTGGV-S---LDNAAEWLAAGVVAVGGGSL 173 (190)
T ss_pred CHHHHHHHHHCCCCEEEE-cCCcccCHHHHHH-HHhhCCCCeEEEeCCC-C---HHHHHHHHHCCCEEEEEchh
Confidence 456678889999999988 4334433333333 2222234555553 4 3 3788888887 788877643
No 256
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=33.98 E-value=2.1e+02 Score=25.79 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=41.4
Q ss_pred HHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCc
Q 016564 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGD 349 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGD 349 (387)
+.++.+.+.|+|+|.++--.+.+.. +..+.+...+ +.+..-+.+....+.+.++...+|.+.++.-+
T Consensus 71 ~~~~~~~~~g~dgv~vh~~~~~~~~-~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 137 (211)
T cd00429 71 RYIEAFAKAGADIITFHAEATDHLH-RTIQLIKELG--MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVN 137 (211)
T ss_pred HHHHHHHHcCCCEEEECccchhhHH-HHHHHHHHCC--CeEEEEecCCCCHHHHHHHHhhCCEEEEEEEC
Confidence 3577778999999999887664333 3334444433 34444443323466677777778988776433
No 257
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=33.97 E-value=1.5e+02 Score=28.79 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=44.0
Q ss_pred HHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEE
Q 016564 280 DDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAM 344 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGIm 344 (387)
+.++.+.+.|+|++++|.. ..++..++.+.+++.|-..-.+..=.| ..+.+..|++.+||.+
T Consensus 106 ~f~~~~~~aGvdgviipDl-p~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfi 167 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADL-PLEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFV 167 (256)
T ss_pred HHHHHHHHcCCCEEEECCC-ChHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCE
Confidence 3467778899999999976 447777888888777665444444445 3567888998888443
No 258
>PRK15452 putative protease; Provisional
Probab=33.95 E-value=69 Score=33.85 Aligned_cols=41 Identities=5% Similarity=0.085 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHH
Q 016564 121 NTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNA 161 (387)
Q Consensus 121 ~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~ 161 (387)
+..+.|.+|+++|++.|||.+-.-++++..+++...|++-.
T Consensus 269 ~~i~~l~~L~~aGV~s~KIEgR~ks~~yv~~vv~~YR~ald 309 (443)
T PRK15452 269 RAIQHVERLTKMGVHSLKIEGRTKSFYYVARTAQVYRKAID 309 (443)
T ss_pred hHHHHHHHHHHcCCCEEEEEeeeCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999888654
No 259
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=33.95 E-value=1.5e+02 Score=28.91 Aligned_cols=53 Identities=17% Similarity=0.060 Sum_probs=33.9
Q ss_pred CceEEE--ecCChhhhhcHHHHHhh-cCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCC
Q 016564 317 DIHVIV--KIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPR 375 (387)
Q Consensus 317 ~i~IIA--KIEt~~gv~NL~eIl~~-sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGK 375 (387)
++.||+ -|.|++- ..+.+.. +|+||+||+=|.- | +-+..+.+.+.+...++|-
T Consensus 234 ~ipvi~~GGI~s~~d---a~~~l~~GAd~V~igr~~l~~--p-~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 234 DIPIIGVGGITSFED---ALEFLMAGASAVQVGTAVYYR--G-FAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred CCCEEEECCCCCHHH---HHHHHHcCCCceeecHHHhcC--c-hHHHHHHHHHHHHHHHcCC
Confidence 366665 3666544 3344433 9999999986653 2 4455666777777777774
No 260
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=33.95 E-value=1.1e+02 Score=28.92 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHHhhHhcCCCEEEEcCC--CCHHHHHHHHHHHHhcCCCceEE
Q 016564 281 DIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGADIHVI 321 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV--~sa~dV~~l~~~L~~~g~~i~II 321 (387)
.+..+.+.++|+|++|+. .+..++.++.+.|.+.+.+++|+
T Consensus 131 ~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~ 173 (213)
T cd02069 131 ILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLL 173 (213)
T ss_pred HHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEE
Confidence 356778899999999987 56777777777787776666655
No 261
>TIGR03424 urea_degr_1 urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=33.69 E-value=1.3e+02 Score=28.39 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=34.7
Q ss_pred CeEecCCCEEEEEecCCCCCccEEEeccCCcc--------------cccCcCCEEEEeCCeEEEEEEE
Q 016564 187 PITLTSGQEFTFTIQRGVGSAECVSVNYDDFV--------------NDVEVGDMLLVDGGMMSLLVKS 240 (387)
Q Consensus 187 ~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~--------------~~v~~Gd~IliDDG~I~l~V~~ 240 (387)
...|+.||.++|+.-++.-....+..+.++.. -.+.+|+.++=|.|+..++|++
T Consensus 15 a~~v~~Gq~lri~d~~G~q~~d~~~~na~d~~Er~~~~~T~~~~~~~~l~~G~~l~S~~~rpm~tIve 82 (198)
T TIGR03424 15 SAVVKAGQTLRIVDLEGNQAVDTLFYNAHDTAERYSAQDTIRAQGNIYLTTGSVLYSNEGNPMLTIVA 82 (198)
T ss_pred EEEECCCCEEEEEeCCCCeEEEEEEecCCCCccccCHHHHHHHhCcccccCCCEEEeCCCCeeEEEEc
Confidence 36789999999986443211122223333221 2467999999999999888775
No 262
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=33.40 E-value=1.6e+02 Score=27.96 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=53.8
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEE
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMV 345 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImI 345 (387)
+.+.=...++.-.++|+|+|.+- ++...++.++-+++++.|....+..+=+| -++.++.++...|.|++
T Consensus 66 Mv~~p~~~i~~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlv 134 (220)
T PRK08883 66 MVKPVDRIIPDFAKAGASMITFH-VEASEHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILL 134 (220)
T ss_pred ccCCHHHHHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEE
Confidence 44333445666678999988775 45556787887888888988889888898 56779999999999888
No 263
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=33.21 E-value=2e+02 Score=27.62 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 304 V~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
++.+++.|.+.|.++.|-+--+.... +|+++++...|.|+.+-.+ +..+..+-+.|+++++|. +.|
T Consensus 80 a~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D~----------~~~r~~ln~~~~~~~ip~--v~~ 145 (240)
T TIGR02355 80 VESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCTDN----------VEVRNQLNRQCFAAKVPL--VSG 145 (240)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCCC----------HHHHHHHHHHHHHcCCCE--EEE
Confidence 34556677777887776654443333 5788888888877765322 456777889999999997 554
No 264
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=33.21 E-value=16 Score=29.45 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=3.4
Q ss_pred CCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEec
Q 016564 215 DDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELK 257 (387)
Q Consensus 215 ~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~ 257 (387)
.++.+.+++||+|..-.| +.-+|.++++|.+..++..|-.++
T Consensus 31 ~~m~~~Lk~Gd~VvT~gG-i~G~V~~i~~~~v~lei~~g~~i~ 72 (82)
T PF02699_consen 31 QEMLASLKPGDEVVTIGG-IYGTVVEIDDDTVVLEIAPGVEIT 72 (82)
T ss_dssp TTGGG--------------------------------------
T ss_pred HHHHHcCCCCCEEEECCc-EEEEEEEEeCCEEEEEECCCeEEE
Confidence 457789999999999877 446677778888887777654443
No 265
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=33.20 E-value=1.1e+02 Score=31.78 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=25.8
Q ss_pred CceEEEec-CCCC-CC-HHHHHHHHHhCCceeEeecC
Q 016564 109 KTKIVCTI-GPST-NT-REMIWKLAEAGMNVARLNMS 142 (387)
Q Consensus 109 ~TKII~TI-GPss-~~-~e~i~~Li~aGm~v~RiN~S 142 (387)
.+.+|++| |+.+ .+ .+.++.+-++|++.+=||+|
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiS 149 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFS 149 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 46899999 6443 22 35677777889999999998
No 266
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=33.19 E-value=85 Score=24.49 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=28.1
Q ss_pred CCEEEEEecCCCCCccEEEeccCCcccccCcCCEEEE-eCCeEEE
Q 016564 193 GQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLV-DGGMMSL 236 (387)
Q Consensus 193 G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~Ili-DDG~I~l 236 (387)
|+...+-.+.. ...+.++-..|+..++.||.+.+ ++|.+.+
T Consensus 9 ~~~AVl~~~~~---~~~~~vp~~~LP~~~keGDvl~i~~~~~~~~ 50 (71)
T PF11213_consen 9 GDYAVLELEDG---EKEIDVPRSRLPEGAKEGDVLEIGEDGSIEI 50 (71)
T ss_pred CCEEEEEECCC---eEEEEEEHHHCCCCCCcccEEEECCCceEEE
Confidence 55555554322 13577777789999999999999 6766643
No 267
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=33.09 E-value=1.8e+02 Score=28.63 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=47.3
Q ss_pred CCcccHHH-HHhhHhcC-CCEEEEcCCCCH--HHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCC
Q 016564 274 ITEKDWDD-IKFGVDNK-VDFYAVSFVKDA--QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARG 348 (387)
Q Consensus 274 LTe~D~~d-I~~a~~~g-vD~I~lSfV~sa--~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRG 348 (387)
|.+.+.++ ++.++..+ +|+|+++-..+- -|...++.+-. ...+.++ -|=+=-..+|+.++++.+||++|+-+
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~-~~~~~Pv--llggGvt~eNv~e~l~~adGviVgS~ 229 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKE-TVKDTPV--LAGSGVNLENVEELLSIADGVIVATT 229 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHh-ccCCCeE--EEECCCCHHHHHHHHhhCCEEEECCC
Confidence 66666654 45556666 999999987654 44555554422 1223343 24455677899999999999999754
No 268
>PRK01712 carbon storage regulator; Provisional
Probab=33.07 E-value=1.1e+02 Score=23.91 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=23.3
Q ss_pred cCcCCEEEEeCCeEEEEEEEEeCCeEEEE
Q 016564 221 VEVGDMLLVDGGMMSLLVKSKTEDSVKCE 249 (387)
Q Consensus 221 v~~Gd~IliDDG~I~l~V~~v~~d~v~c~ 249 (387)
-++|+.|+|+| .|..+|.++.++.|..=
T Consensus 6 Rk~gE~I~Igd-~I~I~V~~i~~~~VrlG 33 (64)
T PRK01712 6 RKVGESLMIGD-DIEVTVLGVKGNQVRIG 33 (64)
T ss_pred ccCCCEEEeCC-CEEEEEEEEeCCEEEEE
Confidence 47899999998 69999999988887653
No 269
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=33.01 E-value=4.1e+02 Score=24.84 Aligned_cols=103 Identities=10% Similarity=0.004 Sum_probs=60.0
Q ss_pred CCCccc-HHHHHhhHhcCCCEEEEcCCCCH------HHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEE
Q 016564 273 SITEKD-WDDIKFGVDNKVDFYAVSFVKDA------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAM 344 (387)
Q Consensus 273 ~LTe~D-~~dI~~a~~~gvD~I~lSfV~sa------~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGIm 344 (387)
.+|..+ .+.++...+.|+|+|-+.+-... ++..++-+.+.+.+.+..+.+..=+ +.+.++...+. .|.|.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEVR 92 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEEE
Confidence 345555 44456667789999999998887 6666666666666655666665544 24444444444 45444
Q ss_pred Ec--CCccccc----CCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 345 VA--RGDLGAE----LPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 345 Ia--RGDLg~e----lg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+. -.|.-.. .+.+.....-...++.++++|+.+
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v 131 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEV 131 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 32 1221000 122224444567788888888875
No 270
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=33.00 E-value=1.4e+02 Score=29.59 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=38.2
Q ss_pred HHHHhhHhcCCCEEEEcCCC------CHHHHHHHHHHHHhcCCCceEEE--ecCChhhhhcHHHHHh--hcCeEEEcCCc
Q 016564 280 DDIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIIT--ASDGAMVARGD 349 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~------sa~dV~~l~~~L~~~g~~i~IIA--KIEt~~gv~NL~eIl~--~sDGImIaRGD 349 (387)
+.++.+.+.|+|+|.+.-.. .+.+...++.+-+.. ++.|++ -|.|++- +.+.++ -+|+||+|||=
T Consensus 151 ~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~~~~d---a~~~l~~~gad~VmigR~~ 225 (319)
T TIGR00737 151 EAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNGDIFSPED---AKAMLETTGCDGVMIGRGA 225 (319)
T ss_pred HHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeCCCCCHHH---HHHHHHhhCCCEEEEChhh
Confidence 34455667899999885321 122444444333222 355554 4666554 444443 38999999986
Q ss_pred cc
Q 016564 350 LG 351 (387)
Q Consensus 350 Lg 351 (387)
|+
T Consensus 226 l~ 227 (319)
T TIGR00737 226 LG 227 (319)
T ss_pred hh
Confidence 64
No 271
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=32.90 E-value=1.8e+02 Score=28.89 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=42.0
Q ss_pred cccHHHHHhhHhcCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh
Q 016564 276 EKDWDDIKFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (387)
Q Consensus 276 e~D~~dI~~a~~~gvD~I~lSf-V~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~ 339 (387)
+.-.+..+...+.|+|+|++++ ..+.+++.++.+.+...-.+++++ .+.+.-+...++|+.+.
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~-~~~~~~~~~~~~eL~~l 232 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV-IVPTSYYTTPTDEFRDA 232 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE-EecCCCCCCCHHHHHHc
Confidence 3445566777889999999996 799999988877664211233443 33454455567777654
No 272
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=32.85 E-value=1.6e+02 Score=26.77 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=65.8
Q ss_pred CCceeeCCCCCccccccccccccCccccccccccccCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCC
Q 016564 66 EPEVVPVSPEDVPKRDGEFQHFGGLQQLGDTSVSMWTKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGD 145 (387)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~ 145 (387)
+..-.||+++.-++|+++|+||.. .|++. -+||+
T Consensus 25 ~~~~~~lT~~G~~~L~~El~~L~~-----------------------------------~i~~A-----------r~~GD 58 (160)
T PRK06342 25 SPHPNLVTEAGLKALEDQLAQARA-----------------------------------AYEAA-----------QAIED 58 (160)
T ss_pred CCCCceECHHHHHHHHHHHHHHHH-----------------------------------HHHHH-----------HHCCC
Confidence 344577888888888888888760 11111 14444
Q ss_pred HHH---HHHHH-HHHHHHHHhcCCCeeEEEEeCCC--CeeeecCCCCCeEecCCCEEEEEec-C--CCCCccEEEeccC-
Q 016564 146 HAS---HQKVI-DLVKEYNAQSKDNVIAIMLDTKG--PEVRSGDLPQPITLTSGQEFTFTIQ-R--GVGSAECVSVNYD- 215 (387)
Q Consensus 146 ~e~---~~~~I-~~iR~~~~~~~~~~i~I~lDL~G--PkIRtG~l~~~i~Lk~G~~v~lt~~-~--~~g~~~~i~v~~~- 215 (387)
..+ .+..+ ..|++..+.+. + +-.+|-.. -+++.|..- .+.-..|++.++++- . ..-....|++..|
T Consensus 59 lsEak~~~~~~e~rI~~L~~~L~-~--A~Ii~~~~~~d~V~~Gs~V-~l~~~~~~~~~~~IVg~~Ead~~~g~IS~~SPl 134 (160)
T PRK06342 59 VNERRRQMARPLRDLRYLAARRR-T--AQLMPDPASTDVVAFGSTV-TFSRDDGRVQTYRIVGEDEADPKAGSISYVSPV 134 (160)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHc-c--CEEECCCCCCCEEEeCcEE-EEEECCCCEEEEEEEChHHhCcCCCcccccCHH
Confidence 443 23334 34777766554 2 33445433 355555431 122245566656532 1 1112234555443
Q ss_pred -CcccccCcCCEEEEeCCeEEEEEEEE
Q 016564 216 -DFVNDVEVGDMLLVDGGMMSLLVKSK 241 (387)
Q Consensus 216 -~l~~~v~~Gd~IliDDG~I~l~V~~v 241 (387)
.-+-.-++||.|.+ |...++|.++
T Consensus 135 G~ALlGk~vGD~V~v--~~~~~eI~~I 159 (160)
T PRK06342 135 ARALMGKAVGDVVSV--GGQELEIIAI 159 (160)
T ss_pred HHHHcCCCCCCEEEE--CCEEEEEEEe
Confidence 12335688999998 5677777654
No 273
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=32.58 E-value=1.2e+02 Score=28.01 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=31.0
Q ss_pred HHHhhHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCC--CceEE
Q 016564 281 DIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGA--DIHVI 321 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSf--V~sa~dV~~l~~~L~~~g~--~i~II 321 (387)
.+..+.+.++|+|++|+ ..+...+.++.+.+++.+. +++|+
T Consensus 125 l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~ 169 (201)
T cd02070 125 FVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVM 169 (201)
T ss_pred HHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEE
Confidence 35567788999999998 5667778888788877765 66655
No 274
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=32.44 E-value=1.3e+02 Score=29.86 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=33.0
Q ss_pred EEecCCCCCCHHHHHHHHHhCCceeEeec-----------CCCCHHHHHHHHHHHHHHHHhcC
Q 016564 113 VCTIGPSTNTREMIWKLAEAGMNVARLNM-----------SHGDHASHQKVIDLVKEYNAQSK 164 (387)
Q Consensus 113 I~TIGPss~~~e~i~~Li~aGm~v~RiN~-----------SHg~~e~~~~~I~~iR~~~~~~~ 164 (387)
+.|+ |-..++|.-++|.++|+|++=.++ ..-+.++..+.++.+.++..+..
T Consensus 151 l~T~-~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~ 212 (268)
T PF09370_consen 151 LFTT-AYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVN 212 (268)
T ss_dssp -EE---EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-
T ss_pred Ceee-eeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhC
Confidence 4455 445689999999999999999988 23456677778888887776554
No 275
>PRK00568 carbon storage regulator; Provisional
Probab=32.41 E-value=72 Score=25.83 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.6
Q ss_pred CcCCEEEEeCCeEEEEEEEEeCCeEEE
Q 016564 222 EVGDMLLVDGGMMSLLVKSKTEDSVKC 248 (387)
Q Consensus 222 ~~Gd~IliDDG~I~l~V~~v~~d~v~c 248 (387)
++|..|+|+| .|..+|.++.++.|..
T Consensus 7 K~gEsI~Igd-~I~I~Vl~i~g~~Vrl 32 (76)
T PRK00568 7 KVNEGIVIDD-NIHIKVISIDRGSVRL 32 (76)
T ss_pred eCCCeEEeCC-CeEEEEEEEcCCEEEE
Confidence 7899999988 6999999999888754
No 276
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=32.34 E-value=3.6e+02 Score=25.82 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=57.2
Q ss_pred CCCCcccHH-HHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCC--hhh--------hhcHHHHHhh-
Q 016564 272 PSITEKDWD-DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIES--ADS--------IPNLHSIITA- 339 (387)
Q Consensus 272 p~LTe~D~~-dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt--~~g--------v~NL~eIl~~- 339 (387)
|.-+..|.+ .+..+.++++|.|+++.. .+....+. .+.++.++..|++ +.+ +..+++.++.
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~p~----~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLHKG----IVRRGHRG---YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeCcc----hhhhcccc---cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 555777754 567788899999999843 33333222 2446778888843 222 1335565554
Q ss_pred cCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 340 SDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 340 sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+|+|.+--. .+- .+-.+....-+.+.+.|+++|.|.
T Consensus 104 a~~v~~~~~-~g~-~~~~~~~~~~~~i~~~~~~~g~~l 139 (258)
T TIGR01949 104 ADAVSIHVN-VGS-DTEWEQIRDLGMIAEICDDWGVPL 139 (258)
T ss_pred CCEEEEEEe-cCC-chHHHHHHHHHHHHHHHHHcCCCE
Confidence 665544211 111 121233455688999999999997
No 277
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.03 E-value=2e+02 Score=28.25 Aligned_cols=75 Identities=19% Similarity=0.124 Sum_probs=44.2
Q ss_pred CCccc-HHHHHhhHhcCCCEEEEcCCC--------------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHh
Q 016564 274 ITEKD-WDDIKFGVDNKVDFYAVSFVK--------------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT 338 (387)
Q Consensus 274 LTe~D-~~dI~~a~~~gvD~I~lSfV~--------------sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~ 338 (387)
+|..| .+.++.+.+.|+|+|.++--. ...++..++.+-+.. ++.|++ .+.....++++++++
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~-~Ggi~t~~~a~~~l~ 301 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIA-VGGIRDPEVAEEILA 301 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEE-eCCCCCHHHHHHHHH
Confidence 44444 344566777899999765321 122233333222221 455554 366666677778887
Q ss_pred h--cCeEEEcCCccc
Q 016564 339 A--SDGAMVARGDLG 351 (387)
Q Consensus 339 ~--sDGImIaRGDLg 351 (387)
. +|.|++||+=|+
T Consensus 302 ~g~aD~V~igR~~la 316 (327)
T cd02803 302 EGKADLVALGRALLA 316 (327)
T ss_pred CCCCCeeeecHHHHh
Confidence 5 899999998554
No 278
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.88 E-value=96 Score=30.90 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=46.1
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh--hcHHHHHhh-cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI--PNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv--~NL~eIl~~-sDGImIaR 347 (387)
..+....+++.|+|.|.+=.. +++++++..+++. .... ||---|+ +|+.++++. .|.|-+|.
T Consensus 203 tleea~ea~~~gaDiI~LDn~-s~e~l~~av~~~~---~~~~----leaSGGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 203 TLDQLEEALELGVDAVLLDNM-TPDTLREAVAIVA---GRAI----TEASGRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred CHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHhC---CCce----EEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 456677889999999999988 7788888877663 2221 5555444 688898888 89888764
No 279
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.84 E-value=1.3e+02 Score=32.40 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=42.1
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCH--HHHHHHHHHHHhcCCCceEEE-ecCChhhhhcHHHHHhhcCeEEEcCC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDA--QVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARG 348 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa--~dV~~l~~~L~~~g~~i~IIA-KIEt~~gv~NL~eIl~~sDGImIaRG 348 (387)
+.+.++..++.|+|+|.+.-.... ..++.++.+-...+..+.|+| .|.|+++.+.+-+ +=+|+|.||.|
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g 314 (502)
T PRK07107 243 YAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIG 314 (502)
T ss_pred HHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEECCC
Confidence 456777788899999998722221 113333332222333466665 7899888866543 34899999543
No 280
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=31.75 E-value=2e+02 Score=29.25 Aligned_cols=71 Identities=11% Similarity=0.297 Sum_probs=46.9
Q ss_pred CCcccHHHHHhhHhcCC--CEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEEe-cCChhhhhcHHHHHhhcCeEEEc
Q 016564 274 ITEKDWDDIKFGVDNKV--DFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVK-IESADSIPNLHSIITASDGAMVA 346 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gv--D~I~lSfV~-sa~dV~~l~~~L~~~g~~i~IIAK-IEt~~gv~NL~eIl~~sDGImIa 346 (387)
.++++.+-+...++.|+ |+|++--.. .-+.+.++-+.+.+.-.+..||++ +-|.+...++.+ .=+|++.+|
T Consensus 94 ~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg 168 (326)
T PRK05458 94 VKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVG 168 (326)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEEC
Confidence 35567777888888855 999982222 223344444445554556889996 999888877665 238998876
No 281
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=31.72 E-value=2.3e+02 Score=22.20 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=40.0
Q ss_pred cCCCCCeEecCCCEEEEEecCC-CCCccEEEeccCCcccccCcCC--EEEEeCC-eEEEEEEEEe---CCeEEEEEEEC
Q 016564 182 GDLPQPITLTSGQEFTFTIQRG-VGSAECVSVNYDDFVNDVEVGD--MLLVDGG-MMSLLVKSKT---EDSVKCEVVDG 253 (387)
Q Consensus 182 G~l~~~i~Lk~G~~v~lt~~~~-~g~~~~i~v~~~~l~~~v~~Gd--~IliDDG-~I~l~V~~v~---~d~v~c~V~~g 253 (387)
+.++..+.+.+|+.++|+..-. .-.+...|.-... .+..++ .+..++| ...|.+..+. .+...|.+.|.
T Consensus 5 ~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~---~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (92)
T cd05737 5 GGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQ---ALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNK 80 (92)
T ss_pred ccCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCE---ECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEEC
Confidence 4667778899999999987531 1122334432221 123333 3444534 4567777653 35788998873
No 282
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=31.13 E-value=2.1e+02 Score=27.53 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 304 V~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
++.+++.|.+.+.++.|.+.-+... -+|+++++...|-|+.+-. -+..+..+-..|+++++|. +.|
T Consensus 88 a~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D----------~~~~r~~ln~~~~~~~ip~--v~~ 153 (245)
T PRK05690 88 VESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCTD----------NVATRNQLNRACFAAKKPL--VSG 153 (245)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCC----------CHHHHHHHHHHHHHhCCEE--EEe
Confidence 3455667777787777665443332 3577888888887776532 2356778889999999997 654
No 283
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=30.72 E-value=91 Score=23.08 Aligned_cols=39 Identities=33% Similarity=0.619 Sum_probs=25.7
Q ss_pred CCCEEEEEecCCCCCccEEEec--cCCcccccCcCCEEEEe
Q 016564 192 SGQEFTFTIQRGVGSAECVSVN--YDDFVNDVEVGDMLLVD 230 (387)
Q Consensus 192 ~G~~v~lt~~~~~g~~~~i~v~--~~~l~~~v~~Gd~IliD 230 (387)
.+..+.++.++..|.-.+...+ +..+.+.+++|+.|.+-
T Consensus 14 ~~~~~~~~l~D~tg~i~~~~~~~~~~~~~~~l~~g~~v~v~ 54 (75)
T PF01336_consen 14 GGKIVFFTLEDGTGSIQVVFFNEEYERFREKLKEGDIVRVR 54 (75)
T ss_dssp ETTEEEEEEEETTEEEEEEEETHHHHHHHHTS-TTSEEEEE
T ss_pred CCCEEEEEEEECCccEEEEEccHHhhHHhhcCCCCeEEEEE
Confidence 3556667776555544444433 66788899999999886
No 284
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=30.57 E-value=1.6e+02 Score=26.83 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=39.7
Q ss_pred HHHHHhhHhcCCCEEEEcCC--------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcCC
Q 016564 279 WDDIKFGVDNKVDFYAVSFV--------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARG 348 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV--------~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaRG 348 (387)
.+.+..+.+.|+|+|.+.-. ...+.++++++.+. ...+. +.-=-..+|+.+++++ +|++.+|++
T Consensus 116 ~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~----~~~i~--v~GGI~~~n~~~~~~~Ga~~v~vGsa 188 (206)
T TIGR03128 116 VKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVK----EARVA--VAGGINLDTIPDVIKLGPDIVIVGGA 188 (206)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcC----CCcEE--EECCcCHHHHHHHHHcCCCEEEEeeh
Confidence 35666778889999987421 13445666665553 22221 1121134788888887 899999987
No 285
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=30.53 E-value=1.5e+02 Score=28.50 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHH
Q 016564 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDL 155 (387)
Q Consensus 108 r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~ 155 (387)
..+|+.+-+-|.....+-++...++|++.+|+-++-.+.....+.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ 120 (263)
T cd07943 73 KQAKLGVLLLPGIGTVDDLKMAADLGVDVVRVATHCTEADVSEQHIGA 120 (263)
T ss_pred cCCEEEEEecCCccCHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHH
Confidence 356665544344455788999999999999998776544433333333
No 286
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=30.40 E-value=1.9e+02 Score=26.50 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=41.7
Q ss_pred cHHHHHhhHhcCCCEEEEcCCC-CHHHH-HHH-HHHHHhcCCCceEEEecCChhhhhcHHHHHhh--cCeEEEcCCc
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVK-DAQVV-HEL-KNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVARGD 349 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~-sa~dV-~~l-~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~--sDGImIaRGD 349 (387)
+.+|++.+.+.|+|+|.+=|.. |+..+ .+. +++.......+.-++=+-+.. ++.+.+++.. .|+|-++-.|
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~-~~~i~~ia~~~~~d~Vqlhg~e 83 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNED-LEEILEIAEELGLDVVQLHGDE 83 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCC-HHHHHHHHHhcCCCEEEECCCC
Confidence 5678999999999999998854 55555 332 222222222222233333322 5555566655 6899887554
No 287
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=30.38 E-value=1.6e+02 Score=26.07 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=28.9
Q ss_pred HHHHhhHhcCCCEEEEcCC--CCHHHHHHHHHHHHhcCC
Q 016564 280 DDIKFGVDNKVDFYAVSFV--KDAQVVHELKNYLKSCGA 316 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV--~sa~dV~~l~~~L~~~g~ 316 (387)
+-++.+.+.++|.|.+|.. .+...+.++.+.|++.|-
T Consensus 43 ~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 43 EFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred HHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCC
Confidence 3567788899999999985 455668888888887764
No 288
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=30.38 E-value=2e+02 Score=29.39 Aligned_cols=92 Identities=23% Similarity=0.173 Sum_probs=55.1
Q ss_pred cHHHHHhhHhcCCCEEEEcC---------CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEE
Q 016564 278 DWDDIKFGVDNKVDFYAVSF---------VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAM 344 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSf---------V~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGIm 344 (387)
..+|.+.+.+.|+|+|.+|. +-+.+-+.++++.+ +.++.||+- -||.+=-+|+++ +|++.
T Consensus 235 ~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~---~~~~~i~~d----gGir~g~Dv~kalaLGA~~v~ 307 (356)
T PF01070_consen 235 SPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAV---GDDIPIIAD----GGIRRGLDVAKALALGADAVG 307 (356)
T ss_dssp SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHH---TTSSEEEEE----SS--SHHHHHHHHHTT-SEEE
T ss_pred cHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhh---cCCeeEEEe----CCCCCHHHHHHHHHcCCCeEE
Confidence 34567889999999999995 33455555555544 567888875 245555555554 89999
Q ss_pred EcCCccccc--CCCC---c-HHHHHHHHHHHHHHCCCC
Q 016564 345 VARGDLGAE--LPIE---E-VPLLQVVFISDIRAMPRM 376 (387)
Q Consensus 345 IaRGDLg~e--lg~e---~-v~~~Qk~II~~c~aaGKp 376 (387)
+||.=|-.- -|-+ + +..++.++.......|..
T Consensus 308 igr~~l~~l~~~g~~gv~~~~~~l~~el~~~m~l~G~~ 345 (356)
T PF01070_consen 308 IGRPFLYALAAGGEEGVERVLEILKEELKRAMFLLGAR 345 (356)
T ss_dssp ESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred EccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999766532 2322 2 334456666666666655
No 289
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=30.14 E-value=1.3e+02 Score=30.14 Aligned_cols=90 Identities=21% Similarity=0.113 Sum_probs=50.3
Q ss_pred HHHHHhhHhcCCCEEEEcCC-----------CC------------------HHHHHHHHHHHHhcCCCceEEEecCChhh
Q 016564 279 WDDIKFGVDNKVDFYAVSFV-----------KD------------------AQVVHELKNYLKSCGADIHVIVKIESADS 329 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV-----------~s------------------a~dV~~l~~~L~~~g~~i~IIAKIEt~~g 329 (387)
.++.+.+.+.|+|+|.+|-. +. ++.+.++++.. .++.|||- -|
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~----~~ipIias----GG 263 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSAL----PDLPLIAS----GG 263 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHc----CCCcEEEE----CC
Confidence 46677788899999998753 11 12222222221 25677763 34
Q ss_pred hhcHHHHHhh----cCeEEEcCCcccccC-CCCc----HHHHHHHHHHHHHHCCCC
Q 016564 330 IPNLHSIITA----SDGAMVARGDLGAEL-PIEE----VPLLQVVFISDIRAMPRM 376 (387)
Q Consensus 330 v~NL~eIl~~----sDGImIaRGDLg~el-g~e~----v~~~Qk~II~~c~aaGKp 376 (387)
+.+-.+++++ +|++++||.=|..-+ |.+. +..+++++-......|..
T Consensus 264 Ir~~~dv~kal~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~el~~~m~~~G~~ 319 (326)
T cd02811 264 IRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELRTAMFLTGAK 319 (326)
T ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5555555544 899999996554333 5443 333444554555555543
No 290
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=30.09 E-value=1.6e+02 Score=28.99 Aligned_cols=66 Identities=5% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHhhHhcCCCEEEEcCCC-------------------------------CHHHHHHHHHHHHhcCCCceEEEecCCh
Q 016564 279 WDDIKFGVDNKVDFYAVSFVK-------------------------------DAQVVHELKNYLKSCGADIHVIVKIESA 327 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~-------------------------------sa~dV~~l~~~L~~~g~~i~IIAKIEt~ 327 (387)
.+..+.+.+.|+|+|.++.-- .+-.++.+.++-+..+.++.||+ -
T Consensus 183 ~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig----~ 258 (299)
T cd02940 183 REIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISG----I 258 (299)
T ss_pred HHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEE----E
Q ss_pred hhhhcHHHHHhh----cCeEEEcCC
Q 016564 328 DSIPNLHSIITA----SDGAMVARG 348 (387)
Q Consensus 328 ~gv~NL~eIl~~----sDGImIaRG 348 (387)
-||.+-+++++. +|+|||+|+
T Consensus 259 GGI~~~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 259 GGIESWEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred CCCCCHHHHHHHHHcCCChheEcee
No 291
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=30.02 E-value=80 Score=27.89 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=57.9
Q ss_pred HHhhHhcCCCEEEEcCCCCH------HHHHHHHHHHHhcCCCceEE-EecC-----------C---hhhhhcHHHHHhh-
Q 016564 282 IKFGVDNKVDFYAVSFVKDA------QVVHELKNYLKSCGADIHVI-VKIE-----------S---ADSIPNLHSIITA- 339 (387)
Q Consensus 282 I~~a~~~gvD~I~lSfV~sa------~dV~~l~~~L~~~g~~i~II-AKIE-----------t---~~gv~NL~eIl~~- 339 (387)
++++.++|.++|-+.+.... .++.++++++++.|-.+.-+ .... + ..+++.+.+.++.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 80 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLA 80 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHH
Confidence 35677889999888776542 35778888888876553222 1111 1 2236666666665
Q ss_pred ----cCeEEEcCC--cccccCCC----CcHHHHHHHHHHHHHHCCCCc
Q 016564 340 ----SDGAMVARG--DLGAELPI----EEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 340 ----sDGImIaRG--DLg~elg~----e~v~~~Qk~II~~c~aaGKp~ 377 (387)
++.+.+..| +....... +.+...-+++...|.++|..+
T Consensus 81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 567777766 33333322 234445578888888888654
No 292
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.97 E-value=78 Score=29.99 Aligned_cols=22 Identities=9% Similarity=-0.097 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHCCCCcccccccee
Q 016564 362 LQVVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 362 ~Qk~II~~c~aaGKp~g~id~~~~ 385 (387)
.-..+++.|+++|+|. +-|..+
T Consensus 89 ~~~~v~~~~~~~~i~~--iPG~~T 110 (204)
T TIGR01182 89 LTPELAKHAQDHGIPI--IPGVAT 110 (204)
T ss_pred CCHHHHHHHHHcCCcE--ECCCCC
Confidence 3468999999999998 666654
No 293
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.92 E-value=1.6e+02 Score=29.77 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=33.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHH
Q 016564 108 RKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVK 157 (387)
Q Consensus 108 r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR 157 (387)
+++|+.+-+=|...+.+.++...++|++.+|+-+.-...+...+.++.+|
T Consensus 75 ~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak 124 (333)
T TIGR03217 75 KRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMAR 124 (333)
T ss_pred CCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHH
Confidence 45777655556556788999999999999998774333334444444444
No 294
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=29.85 E-value=2.6e+02 Score=26.78 Aligned_cols=87 Identities=13% Similarity=-0.050 Sum_probs=52.6
Q ss_pred HHHHHhhHhcCCCEEEEcCCCCH-----HHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHh-h-cCeEEEcCCc
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKDA-----QVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIIT-A-SDGAMVARGD 349 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~sa-----~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~-~-sDGImIaRGD 349 (387)
.+.++...+.|+|+|.++-+... -+...++++.+. .+++|++- |=+++- +.+++. - +||+|+|+..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~--~~ipvia~GGi~s~~d---i~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEA--VKIPVIASGGAGKPEH---FYEAFTKGKADAALAASVF 232 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHh--CCCCEEEeCCCCCHHH---HHHHHHcCCcceeeEhHHH
Confidence 44556777899999999766441 123334443332 24556653 333333 334444 2 7999999987
Q ss_pred ccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 350 LGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 350 Lg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
..-++++ +.+.+.|+++|.++
T Consensus 233 ~~~~~~~-------~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 233 HYREITI-------GEVKEYLAERGIPV 253 (254)
T ss_pred hCCCCCH-------HHHHHHHHHCCCcc
Confidence 6666653 35567777888765
No 295
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=29.75 E-value=4.4e+02 Score=27.21 Aligned_cols=90 Identities=10% Similarity=0.100 Sum_probs=53.0
Q ss_pred ccHH-HHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhh-----------hcHHHHHhh-cCeE
Q 016564 277 KDWD-DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSI-----------PNLHSIITA-SDGA 343 (387)
Q Consensus 277 ~D~~-dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv-----------~NL~eIl~~-sDGI 343 (387)
.|.+ .++.+.+.|+|.+++++ -.++.+......++.+|.|+-....+ -..++-+.. +|+|
T Consensus 91 ~dp~~~i~~a~~~g~dAv~~~~-------G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV 163 (348)
T PRK09250 91 FDPENIVKLAIEAGCNAVASTL-------GVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAV 163 (348)
T ss_pred cCHHHHHHHHHhcCCCEEEeCH-------HHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEE
Confidence 4544 56778888999999982 23333333333467789998765444 124444444 6644
Q ss_pred E--EcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 344 M--VARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 344 m--IaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
- |-.| -+.- .+...--.++...|.++|.|+
T Consensus 164 ~~tvy~G---s~~E-~~ml~~l~~i~~ea~~~GlPl 195 (348)
T PRK09250 164 GATIYFG---SEES-RRQIEEISEAFEEAHELGLAT 195 (348)
T ss_pred EEEEecC---CHHH-HHHHHHHHHHHHHHHHhCCCE
Confidence 3 3333 0000 122333478999999999997
No 296
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.70 E-value=3.6e+02 Score=25.50 Aligned_cols=100 Identities=7% Similarity=-0.038 Sum_probs=56.6
Q ss_pred HHHHHhhHhcCCCEEEEcC------C--CCHHHHHHHHHHHHhcCCCceEEE--------ec------CChhhhhcHHHH
Q 016564 279 WDDIKFGVDNKVDFYAVSF------V--KDAQVVHELKNYLKSCGADIHVIV--------KI------ESADSIPNLHSI 336 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSf------V--~sa~dV~~l~~~L~~~g~~i~IIA--------KI------Et~~gv~NL~eI 336 (387)
.+.++.+.+.|.++|=+.. . -+..+++++++.+++.|-.+..+. .+ +..++++.+...
T Consensus 16 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 95 (275)
T PRK09856 16 EHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLA 95 (275)
T ss_pred HHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHH
Confidence 3457778889999888742 1 234578888888877665432221 11 112344445444
Q ss_pred Hhh-----cCeEEEcCCcccccCCC----CcHHHHHHHHHHHHHHCCCCcc
Q 016564 337 ITA-----SDGAMVARGDLGAELPI----EEVPLLQVVFISDIRAMPRMSS 378 (387)
Q Consensus 337 l~~-----sDGImIaRGDLg~elg~----e~v~~~Qk~II~~c~aaGKp~g 378 (387)
++. +..+.+..+..+..-.. +.+...-+++...|.++|...+
T Consensus 96 i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 146 (275)
T PRK09856 96 MDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLI 146 (275)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 443 56777766654322111 2333445777788888887653
No 297
>PLN02826 dihydroorotate dehydrogenase
Probab=29.68 E-value=2.5e+02 Score=29.45 Aligned_cols=101 Identities=11% Similarity=0.095 Sum_probs=57.3
Q ss_pred CCCCcccHHHHH-hhHhcCCCEEEEcCCCC--HHH----------------------HHHHHHHHHhcCCCceEEEe--c
Q 016564 272 PSITEKDWDDIK-FGVDNKVDFYAVSFVKD--AQV----------------------VHELKNYLKSCGADIHVIVK--I 324 (387)
Q Consensus 272 p~LTe~D~~dI~-~a~~~gvD~I~lSfV~s--a~d----------------------V~~l~~~L~~~g~~i~IIAK--I 324 (387)
|.+|+.|..++- .+.+.|+|+|+++..-. +.| ++.++++-+..+.++.||+- |
T Consensus 271 Pdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI 350 (409)
T PLN02826 271 PDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGV 350 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 567777766665 47889999999986311 111 22222222333445677764 5
Q ss_pred CChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCC
Q 016564 325 ESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRM 376 (387)
Q Consensus 325 Et~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp 376 (387)
.|.+-+ ++-|.+=++.|.++++=+- -|..-+..+.+.+.+...+.|..
T Consensus 351 ~sg~Da--~e~i~AGAs~VQv~Ta~~~--~Gp~~i~~I~~eL~~~l~~~G~~ 398 (409)
T PLN02826 351 SSGEDA--YKKIRAGASLVQLYTAFAY--EGPALIPRIKAELAACLERDGFK 398 (409)
T ss_pred CCHHHH--HHHHHhCCCeeeecHHHHh--cCHHHHHHHHHHHHHHHHHcCCC
Confidence 553332 4444444889998874221 14444455556666666677743
No 298
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=29.40 E-value=2e+02 Score=28.12 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=43.9
Q ss_pred ccHHHHHhhHhcCCCEEEEcCC------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHH---hhcCeEEEcC
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFV------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSII---TASDGAMVAR 347 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV------~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl---~~sDGImIaR 347 (387)
++.++++.+++.|++.|.+..= -+.+...++..++. .+..+|+ |+ |+.+-+++. ..+||++||.
T Consensus 159 h~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip---~~~~~Is--ES--GI~t~~d~~~l~~~~davLvG~ 231 (247)
T PRK13957 159 HTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLP---PNIVKVG--ES--GIESRSDLDKFRKLVDAALIGT 231 (247)
T ss_pred CCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC---CCcEEEE--cC--CCCCHHHHHHHHHhCCEEEECH
Confidence 5688899999999999998753 23344444444442 3444444 43 555544442 2389999997
Q ss_pred Cccccc
Q 016564 348 GDLGAE 353 (387)
Q Consensus 348 GDLg~e 353 (387)
.-+..+
T Consensus 232 ~lm~~~ 237 (247)
T PRK13957 232 YFMEKK 237 (247)
T ss_pred HHhCCC
Confidence 666544
No 299
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=29.18 E-value=2.1e+02 Score=28.39 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=43.8
Q ss_pred HHHHHhhHhcCCCEEEEcC------CCCHHHHHHH-HHHHHhcCCCceEEEec---CChhhhhcHHHHHhh-cCeEEEcC
Q 016564 279 WDDIKFGVDNKVDFYAVSF------VKDAQVVHEL-KNYLKSCGADIHVIVKI---ESADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSf------V~sa~dV~~l-~~~L~~~g~~i~IIAKI---Et~~gv~NL~eIl~~-sDGImIaR 347 (387)
.+.++|.++.|+|+|.+.- .-|.++=.++ +...+..++.++||+-+ =|.++++....--+. +||+|+-+
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~ 107 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVP 107 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3456788889999988742 2344444444 44445556778888876 355666655554444 89998844
No 300
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=29.07 E-value=1.3e+02 Score=26.95 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=13.1
Q ss_pred CCeEecCCCEEEEEec
Q 016564 186 QPITLTSGQEFTFTIQ 201 (387)
Q Consensus 186 ~~i~Lk~G~~v~lt~~ 201 (387)
..+.+++|++|+++..
T Consensus 61 ~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 61 EALVVKKGTPVKVTVE 76 (135)
T ss_pred CEEEECCCCEEEEEEE
Confidence 4689999999988754
No 301
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.95 E-value=1.8e+02 Score=29.19 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=43.2
Q ss_pred CCccc-HHHHHhhHhcCCCEEEEcCC------CC--------------HHHHHHHHHHHHhcCCCceEEEecCChhhhhc
Q 016564 274 ITEKD-WDDIKFGVDNKVDFYAVSFV------KD--------------AQVVHELKNYLKSCGADIHVIVKIESADSIPN 332 (387)
Q Consensus 274 LTe~D-~~dI~~a~~~gvD~I~lSfV------~s--------------a~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~N 332 (387)
+|..| .+.++...+.|+|+|-++-- .. .+....+++.+ +++|++ .+.....+.
T Consensus 233 ~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-----~iPVi~-~G~i~t~~~ 306 (338)
T cd04733 233 FTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-----KTPLMV-TGGFRTRAA 306 (338)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc-----CCCEEE-eCCCCCHHH
Confidence 34344 34445556689999986421 10 12223333332 455555 466667778
Q ss_pred HHHHHhh--cCeEEEcCCccc
Q 016564 333 LHSIITA--SDGAMVARGDLG 351 (387)
Q Consensus 333 L~eIl~~--sDGImIaRGDLg 351 (387)
++++++. +|.|++||+=|+
T Consensus 307 a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 307 MEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred HHHHHHcCCCCeeeeChHhhh
Confidence 8888874 899999997554
No 302
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.62 E-value=1.8e+02 Score=28.41 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=49.9
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHh
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT 338 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~ 338 (387)
.|.+.++.=+++|+||++--++=+++.+.++.+.+.+.|-+++|++=|=-.....++..++.
T Consensus 145 ~~~~~L~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~ 206 (272)
T TIGR00676 145 EDIENLKRKVDAGADYAITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAE 206 (272)
T ss_pred HHHHHHHHHHHcCCCeEeeccccCHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHh
Confidence 56667777788999999999999999999999999888878888887765555555555554
No 303
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=28.57 E-value=2.2e+02 Score=26.85 Aligned_cols=63 Identities=17% Similarity=0.352 Sum_probs=44.0
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCHH--------HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEE
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDAQ--------VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMV 345 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa~--------dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImI 345 (387)
+.+....+.+.|++| +.||+...+ -+.++.+++...+...+|++ .|+.|..+|.++ +|.+-+
T Consensus 111 s~~Qa~~Aa~AGA~y-vsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-----As~r~~~ei~~a~~~Gad~vTv 184 (211)
T cd00956 111 SAAQALLAAKAGATY-VSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-----ASIRNPQHVIEAALAGADAITL 184 (211)
T ss_pred CHHHHHHHHHcCCCE-EEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-----cccCCHHHHHHHHHcCCCEEEe
Confidence 344456778899999 889998744 34577777777666666664 377788888875 566655
Q ss_pred c
Q 016564 346 A 346 (387)
Q Consensus 346 a 346 (387)
.
T Consensus 185 ~ 185 (211)
T cd00956 185 P 185 (211)
T ss_pred C
Confidence 4
No 304
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=28.56 E-value=1.9e+02 Score=28.03 Aligned_cols=68 Identities=9% Similarity=0.215 Sum_probs=44.2
Q ss_pred HHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEec--CC-hhhhhcHHHHHhh-cCeEEEcCCcccc
Q 016564 282 IKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKI--ES-ADSIPNLHSIITA-SDGAMVARGDLGA 352 (387)
Q Consensus 282 I~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKI--Et-~~gv~NL~eIl~~-sDGImIaRGDLg~ 352 (387)
.+.+.+.|+|||=.+|.. ++..++++.....-.+..+.=| +| .++++++.+++++ ++|+.++|.=+..
T Consensus 166 ~~~a~e~GAD~vKt~~~~---~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~ 237 (267)
T PRK07226 166 ARVAAELGADIVKTNYTG---DPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQH 237 (267)
T ss_pred HHHHHHHCCCEEeeCCCC---CHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcC
Confidence 356778999999999875 4555555554322233333334 35 3677778888877 7899988876543
No 305
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=28.52 E-value=2.8e+02 Score=23.38 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHh--hcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccc
Q 016564 302 QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT--ASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSS 379 (387)
Q Consensus 302 ~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~--~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~ 379 (387)
--+..+++++++.|-+..+.+- ++.++++.+. ..|.|++|+ .+.+.++++-+.|...|+|+..
T Consensus 16 lla~k~k~~~~e~gi~~~i~a~-----~~~e~~~~~~~~~~DvIll~P----------Qi~~~~~~i~~~~~~~~ipv~~ 80 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDAI-----TATEGEKAIAAAEYDLYLVSP----------QTKMYFKQFEEAGAKVGKPVVQ 80 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEEe-----cHHHHHHhhccCCCCEEEECh----------HHHHHHHHHHHHhhhcCCCEEE
Confidence 3456677888877766444332 4445665544 378888873 5777889999999999999887
Q ss_pred cccc
Q 016564 380 IKAF 383 (387)
Q Consensus 380 id~~ 383 (387)
||..
T Consensus 81 I~~~ 84 (104)
T PRK09590 81 IPPQ 84 (104)
T ss_pred eCHH
Confidence 7753
No 306
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=28.50 E-value=1.3e+02 Score=30.16 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=38.4
Q ss_pred HHHhhHhcCCCEEEEcCCC------CHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHh--hcCeEEEcCCcc
Q 016564 281 DIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIIT--ASDGAMVARGDL 350 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV~------sa~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~--~sDGImIaRGDL 350 (387)
.++.+.+.|+|+|.+.-.. ...+...+++.-+. -+++||+- |-|++-. .++++ -+||||||||=|
T Consensus 154 ~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~--~~iPVI~nGgI~s~~da---~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 154 IAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK--VSIPVIANGDITDPLKA---RAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred HHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHh--cCCcEEEeCCCCCHHHH---HHHHhccCCCEEEEChHhh
Confidence 3455667899998775322 11233333333222 24667754 6665433 44444 389999999877
Q ss_pred cc
Q 016564 351 GA 352 (387)
Q Consensus 351 g~ 352 (387)
+-
T Consensus 229 ~n 230 (321)
T PRK10415 229 GR 230 (321)
T ss_pred cC
Confidence 53
No 307
>PRK15108 biotin synthase; Provisional
Probab=28.47 E-value=1.5e+02 Score=30.03 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=24.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCceeEeec
Q 016564 110 TKIVCTIGPSTNTREMIWKLAEAGMNVARLNM 141 (387)
Q Consensus 110 TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~ 141 (387)
..+++|+|+- +.|.+++|.++|++.+-+|+
T Consensus 125 i~v~~s~G~l--s~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 125 LETCMTLGTL--SESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred CEEEEeCCcC--CHHHHHHHHHcCCCEEeecc
Confidence 4678899965 49999999999999765544
No 308
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=28.43 E-value=1.1e+02 Score=29.79 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCceeEeecC-C-------CCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeee
Q 016564 123 REMIWKLAEAGMNVARLNMS-H-------GDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVR 180 (387)
Q Consensus 123 ~e~i~~Li~aGm~v~RiN~S-H-------g~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIR 180 (387)
.+..++|+++|+++.=+|+. - ...+++.++...|+...+.. .++|.+|+.-|++=
T Consensus 27 ~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~---~~plSIDT~~~~v~ 89 (257)
T cd00739 27 VAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL---DVLISVDTFRAEVA 89 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC---CCcEEEeCCCHHHH
Confidence 45688899999999999852 2 22455666666666654432 36799999877643
No 309
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=28.36 E-value=2.3e+02 Score=27.02 Aligned_cols=87 Identities=11% Similarity=-0.008 Sum_probs=49.3
Q ss_pred HHHHHhhHhcCCCEEEEcCCCC-----HHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh--cCeEEEcCCc
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKD-----AQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA--SDGAMVARGD 349 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~s-----a~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~--sDGImIaRGD 349 (387)
.+.++.+.+.|++.|.+.-+.+ .-|...+++.... .++++||- |-|.+- +.++++. +||+|+|+..
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~--~~ipvia~GGv~s~~d---~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDA--VNVPVIASGGAGNLEH---FVEAFTEGGADAALAASIF 230 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhh--CCCCEEEECCCCCHHH---HHHHHHhCCccEEeEhHHH
Confidence 3455667788999887754332 1234444443332 24566654 333322 2233432 7999999987
Q ss_pred ccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 350 LGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 350 Lg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
..-.+++++ +...|++.|.++
T Consensus 231 ~~~~~~~~~-------~~~~~~~~~~~~ 251 (253)
T PRK02083 231 HFGEITIGE-------LKAYLAEQGIPV 251 (253)
T ss_pred HcCCCCHHH-------HHHHHHHCCCcc
Confidence 777776553 345555677765
No 310
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.34 E-value=2.1e+02 Score=27.27 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=55.1
Q ss_pred HHHHHhhHhcCCCEEEEcCCC---------CHHHHHHHHHHHHhc-CCCceEEEe----c------CChhhhhcHHHHHh
Q 016564 279 WDDIKFGVDNKVDFYAVSFVK---------DAQVVHELKNYLKSC-GADIHVIVK----I------ESADSIPNLHSIIT 338 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~---------sa~dV~~l~~~L~~~-g~~i~IIAK----I------Et~~gv~NL~eIl~ 338 (387)
.+.++.+.+.|.|+|=+++-. +.+++.++++.+.+. +..+.+.+- . +...+++.+...++
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 92 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIE 92 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHH
Confidence 345778889999998665321 458899999998877 434333321 1 12335555666655
Q ss_pred h-----cCeEEEcCCcccccCCC----CcHHHHHHHHHHHHHHCCCCcc
Q 016564 339 A-----SDGAMVARGDLGAELPI----EEVPLLQVVFISDIRAMPRMSS 378 (387)
Q Consensus 339 ~-----sDGImIaRGDLg~elg~----e~v~~~Qk~II~~c~aaGKp~g 378 (387)
. ++.+.+-.|--.. ... +.+...-+++...|+++|..++
T Consensus 93 ~A~~lG~~~v~~~~g~~~~-~~~~~~~~~~~~~l~~l~~~a~~~gi~l~ 140 (279)
T cd00019 93 RCEELGIRLLVFHPGSYLG-QSKEEGLKRVIEALNELIDKAETKGVVIA 140 (279)
T ss_pred HHHHcCCCEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 4 4566664442211 111 1223334555666666666553
No 311
>PF09347 DUF1989: Domain of unknown function (DUF1989); InterPro: IPR018959 This entry represents proteins that are functionally uncharacterised. ; PDB: 3ORU_A 3SIY_C 3DI4_A.
Probab=28.26 E-value=1.2e+02 Score=27.69 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=30.5
Q ss_pred eEecCCCEEEEEecCCCCCccEEEeccCCc--------------ccccCcCCEEEEeCCeEEEEEEE
Q 016564 188 ITLTSGQEFTFTIQRGVGSAECVSVNYDDF--------------VNDVEVGDMLLVDGGMMSLLVKS 240 (387)
Q Consensus 188 i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l--------------~~~v~~Gd~IliDDG~I~l~V~~ 240 (387)
..|++||.++|+.-++.-....+..+.++. --.+++||.++=|.|+..+++++
T Consensus 12 ~~v~rG~~lri~d~~G~q~~d~~~~~a~d~~Er~s~~~T~~~~~~~~l~~G~~L~S~~~rpm~tIv~ 78 (166)
T PF09347_consen 12 FRVKRGQVLRITDPEGNQVVDLLAYNADDPSERLSMGDTRKAQHTIYLTTGDVLYSNMGRPMLTIVE 78 (166)
T ss_dssp EEE-TT-EEEEEESSSS--EEEEEEETTEEEEEB-HHHHHHHHCBSC--TT-EEEBTTTSEEEEEEE
T ss_pred EEECCCCEEEEEeCCCCceeEEEEEecCCCcEEeCHHHHHHhhcccccCCCCEEEcCCCCeEEEEEc
Confidence 578999999998754321112222233221 12568999999999999999876
No 312
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=28.19 E-value=1.3e+02 Score=30.00 Aligned_cols=69 Identities=22% Similarity=0.137 Sum_probs=42.3
Q ss_pred HHHHhhHhcCCCEEEEcC----------CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh--cCeEEEcC
Q 016564 280 DDIKFGVDNKVDFYAVSF----------VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVAR 347 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSf----------V~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~--sDGImIaR 347 (387)
+.++...+.|+|+|-++. +.....+..++. +.+. -+++|++ .+.....+.++++++. +|.|++||
T Consensus 245 ~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~-ir~~-~~iPVi~-~G~i~t~~~a~~~l~~g~aD~V~~gR 321 (336)
T cd02932 245 ELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAER-IRQE-AGIPVIA-VGLITDPEQAEAILESGRADLVALGR 321 (336)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHH-HHhh-CCCCEEE-eCCCCCHHHHHHHHHcCCCCeehhhH
Confidence 344455567999999762 112222222222 2221 2466664 5777777888888886 89999999
Q ss_pred Cccc
Q 016564 348 GDLG 351 (387)
Q Consensus 348 GDLg 351 (387)
+=++
T Consensus 322 ~~i~ 325 (336)
T cd02932 322 ELLR 325 (336)
T ss_pred HHHh
Confidence 8654
No 313
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=28.17 E-value=90 Score=23.39 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=27.7
Q ss_pred CcCCEEEEeCCeEEEEEEEEeC------CeEEEEEEECcEe
Q 016564 222 EVGDMLLVDGGMMSLLVKSKTE------DSVKCEVVDGGEL 256 (387)
Q Consensus 222 ~~Gd~IliDDG~I~l~V~~v~~------d~v~c~V~~gG~L 256 (387)
++||.|.+.-|--.|+|..+.+ +.+.|.=-++...
T Consensus 2 ~~GDvV~LKSGGp~MTV~~v~~~~~~~~~~v~C~WFd~~~~ 42 (53)
T PF09926_consen 2 KIGDVVQLKSGGPRMTVTEVGPNAGASGGWVECQWFDGHGE 42 (53)
T ss_pred CCCCEEEEccCCCCeEEEEccccccCCCCeEEEEeCCCCCc
Confidence 6899999999999999997754 4888886665443
No 314
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=28.10 E-value=1.4e+02 Score=22.91 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=27.6
Q ss_pred ccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEE
Q 016564 220 DVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVD 252 (387)
Q Consensus 220 ~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~ 252 (387)
..++||.|.+.+| +.-+|..+.++++.+.+..
T Consensus 3 ~a~vGdiIefk~g-~~G~V~kv~eNSVIVdIT~ 34 (57)
T PF09953_consen 3 KAKVGDIIEFKDG-FTGIVEKVYENSVIVDITI 34 (57)
T ss_pred ccccCcEEEEcCC-cEEEEEEEecCcEEEEEEe
Confidence 3478999999998 7889999999999998864
No 315
>PLN02389 biotin synthase
Probab=28.05 E-value=1.4e+02 Score=30.75 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=34.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCceeEeecCC--------CCHHHHHHHHHHHHHHHH
Q 016564 110 TKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSH--------GDHASHQKVIDLVKEYNA 161 (387)
Q Consensus 110 TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SH--------g~~e~~~~~I~~iR~~~~ 161 (387)
-.|.+|.|.. +.|.++.|.++|++.+-+|+.= .+...|.+.++.++.+.+
T Consensus 167 l~i~~s~G~l--~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~ 224 (379)
T PLN02389 167 MEVCCTLGML--EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVRE 224 (379)
T ss_pred cEEEECCCCC--CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHH
Confidence 4577888864 6899999999999988877761 011245555555655533
No 316
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=27.98 E-value=2.9e+02 Score=26.69 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=42.2
Q ss_pred HHHHHhhHhcCCCEEEEcCC-----------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-----cCe
Q 016564 279 WDDIKFGVDNKVDFYAVSFV-----------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDG 342 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV-----------~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-----sDG 342 (387)
.+..+.+.+.|+|+|-+.+- ++++.+.++.+.+.+. -++.|++|+-.-...+++.++++. +|+
T Consensus 114 ~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~ 192 (289)
T cd02810 114 VELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYFDLEDIVELAKAAERAGADG 192 (289)
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 34456667789999887542 2455555555555432 267899998765554455566553 688
Q ss_pred EEEc
Q 016564 343 AMVA 346 (387)
Q Consensus 343 ImIa 346 (387)
|.+.
T Consensus 193 i~~~ 196 (289)
T cd02810 193 LTAI 196 (289)
T ss_pred EEEE
Confidence 8774
No 317
>TIGR00202 csrA carbon storage regulator (csrA). Modulates the expression of genes in the glycogen biosynthesis and gluconeogenesis pathways by accelerating the 5'-to-3' degradation of these transcripts through selective RNA binding. The N-terminal end of the sequence (AA 11-45) contains the KH motif which is characteristic of a set of RNA-binding proteins.
Probab=27.70 E-value=1.1e+02 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.5
Q ss_pred cCcCCEEEEeCCeEEEEEEEEeCCeEEE
Q 016564 221 VEVGDMLLVDGGMMSLLVKSKTEDSVKC 248 (387)
Q Consensus 221 v~~Gd~IliDDG~I~l~V~~v~~d~v~c 248 (387)
-++|..|.|+| .|..+|.++.++.+..
T Consensus 6 Rk~gE~I~Igd-~I~I~Vl~i~g~~Vrl 32 (69)
T TIGR00202 6 RKVNESIQIGD-DIEVKVLSVKGDQVKL 32 (69)
T ss_pred ccCCCEEEeCC-CEEEEEEEEcCCeEEE
Confidence 47899999988 4999999988887754
No 318
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=27.69 E-value=2.4e+02 Score=26.57 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=41.0
Q ss_pred ccCcCCEEEEeC--C-eEEEEEEEEeCCeEEEEEEECcEecCCcc--eeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEE
Q 016564 220 DVEVGDMLLVDG--G-MMSLLVKSKTEDSVKCEVVDGGELKSRRH--LNVRGKSATLPSITEKDWDDIKFGVDNKVDFYA 294 (387)
Q Consensus 220 ~v~~Gd~IliDD--G-~I~l~V~~v~~d~v~c~V~~gG~L~s~Kg--Vn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~ 294 (387)
-+++||.|.+-| | ....++.+++.+.+.+++...-....... +.+= ..+|. .++-...|+.+.+.|++-|.
T Consensus 16 R~k~Gd~i~v~dg~g~~~~a~i~~i~~~~~~~~i~~~~~~~~~~~~~i~L~---~al~K-~~~~d~il~katELGv~~i~ 91 (225)
T PF04452_consen 16 RLKEGDSIEVFDGDGGEYRAEITEISKKSATLRILEELEIPPEPPPEITLA---QALPK-GDRMDWILQKATELGVSRII 91 (225)
T ss_dssp T--TT-EEEEEESSSEEEEEEEEEEESSEEEEEEEEEEE---SSSSEEEEE---EE--S-TTHHHHHHHHHHHTT-SEEE
T ss_pred CCCCCCEEEEEECCCCEEEEEEEECcCcEEEEEEeeeccCCCCCcceEEEE---EEEEc-CccHHHHHHHHHhcCCCEEE
Confidence 457888887754 3 45777888999999888875433322211 2221 12222 24456677889999999765
Q ss_pred EcCC
Q 016564 295 VSFV 298 (387)
Q Consensus 295 lSfV 298 (387)
.=+.
T Consensus 92 p~~s 95 (225)
T PF04452_consen 92 PVIS 95 (225)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 4333
No 319
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=27.67 E-value=3e+02 Score=21.55 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=36.8
Q ss_pred CeEecCCCEEEEEecCCCCC--ccEEEeccCCcccccCcCCEEEEeCCeEEE-EEE-----EEeCCeEEEEEEEC--cEe
Q 016564 187 PITLTSGQEFTFTIQRGVGS--AECVSVNYDDFVNDVEVGDMLLVDGGMMSL-LVK-----SKTEDSVKCEVVDG--GEL 256 (387)
Q Consensus 187 ~i~Lk~G~~v~lt~~~~~g~--~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l-~V~-----~v~~d~v~c~V~~g--G~L 256 (387)
...+.+|+.++|...-. |. ....|.-....+..-.......+.+|.+.+ .+. ..+.+...|++.|+ |..
T Consensus 8 ~~~~~~g~~v~l~C~v~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 8 DIVAVRGGPVVLNCSAE-GEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred CeEEcCCCCEEEeeecc-cCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 35567899999987532 22 223333211122211112234455664332 332 23456799999988 776
Q ss_pred cCC
Q 016564 257 KSR 259 (387)
Q Consensus 257 ~s~ 259 (387)
.++
T Consensus 87 ~s~ 89 (95)
T cd05722 87 VSR 89 (95)
T ss_pred EEe
Confidence 554
No 320
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=27.44 E-value=96 Score=32.94 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=44.1
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCC------CHHHHHHHHHHHHhcCCCceEEE--ecCChhhhhcHHHHHhhcCeEEEcCC
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIV--KIESADSIPNLHSIITASDGAMVARG 348 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~------sa~dV~~l~~~L~~~g~~i~IIA--KIEt~~gv~NL~eIl~~sDGImIaRG 348 (387)
++.++++.+++.|++.|.+..-+ +.+.-.+|..++ -.++.+|+ =|.|++-+..+. ..+||++||-.
T Consensus 167 h~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~i---p~~~~~vseSGI~t~~d~~~~~---~~~davLiG~~ 240 (454)
T PRK09427 167 SNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLI---PADVIVISESGIYTHAQVRELS---PFANGFLIGSS 240 (454)
T ss_pred CCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhC---CCCcEEEEeCCCCCHHHHHHHH---hcCCEEEECHH
Confidence 56788899999999999987532 333333344443 23444554 244444444432 23899999877
Q ss_pred cccccCC
Q 016564 349 DLGAELP 355 (387)
Q Consensus 349 DLg~elg 355 (387)
-+..+=+
T Consensus 241 lm~~~d~ 247 (454)
T PRK09427 241 LMAEDDL 247 (454)
T ss_pred HcCCCCH
Confidence 6665543
No 321
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=27.29 E-value=2.6e+02 Score=25.11 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=40.8
Q ss_pred EecCCCEEEEEecC--CCCC---ccEEEeccCCccc--ccCcCCEEEEe--CC-eEEEEEEEEeCCeEEE
Q 016564 189 TLTSGQEFTFTIQR--GVGS---AECVSVNYDDFVN--DVEVGDMLLVD--GG-MMSLLVKSKTEDSVKC 248 (387)
Q Consensus 189 ~Lk~G~~v~lt~~~--~~g~---~~~i~v~~~~l~~--~v~~Gd~IliD--DG-~I~l~V~~v~~d~v~c 248 (387)
-++.|+++.|++.. .+|. .....++-..|.. ..++|..+.+. +| .+..+|.+++++.|..
T Consensus 54 gm~~Ge~~~v~ipp~~ayG~~d~~~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~v 123 (156)
T PRK15095 54 GLKVGDKKTFSLEPEAAFGVPSPDLIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITV 123 (156)
T ss_pred CCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEEEcCCEEEE
Confidence 36789999998764 3332 2344555555553 57899998875 56 4678899988887643
No 322
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=27.25 E-value=4.1e+02 Score=24.78 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=49.4
Q ss_pred CCCceEEEecCCCCCC------HHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCe-eEEEEeCCCCee
Q 016564 107 RRKTKIVCTIGPSTNT------REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNV-IAIMLDTKGPEV 179 (387)
Q Consensus 107 ~r~TKII~TIGPss~~------~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~-i~I~lDL~GPkI 179 (387)
..+||||.+.=-...+ .+.+.+|...|.|++++-..--+.++..++++..+++.... +.| +++.|--.|.--
T Consensus 111 ~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~-~~p~i~~~MG~~G~~S 189 (225)
T cd00502 111 KGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLY-DIPLIAINMGELGKLS 189 (225)
T ss_pred hCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcC-CCCEEEEEcCCCCchh
Confidence 3589999988222111 35788999999999999988778888888887777665432 233 555555545333
Q ss_pred e
Q 016564 180 R 180 (387)
Q Consensus 180 R 180 (387)
|
T Consensus 190 R 190 (225)
T cd00502 190 R 190 (225)
T ss_pred h
Confidence 3
No 323
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=26.99 E-value=2.3e+02 Score=28.07 Aligned_cols=53 Identities=17% Similarity=0.078 Sum_probs=43.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhc
Q 016564 110 TKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQS 163 (387)
Q Consensus 110 TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~ 163 (387)
..+..-+-- +.+.+.+++.+++|.+.+-|..||-+.++..+..+.++++....
T Consensus 75 vpv~lHlDH-~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~ 127 (281)
T PRK06806 75 VPVAVHFDH-GMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQY 127 (281)
T ss_pred CCEEEECCC-CCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 345555533 45799999999999999999999999998888888888877754
No 324
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=26.95 E-value=2.8e+02 Score=25.01 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=37.3
Q ss_pred cHHHHHhhHhcCCCEEEEcC---------CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSF---------VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSf---------V~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaR 347 (387)
+..+...+...++|++.+-. ....+.++++++. .+-.+.+..=| | .+|+.+.+++ +|++.+|+
T Consensus 115 t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~GGI-~---~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 115 DPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---LGVKVAVAGGI-T---PDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred CHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh---cCCCEEEECCc-C---HHHHHHHHhcCCCEEEEee
Confidence 33344447788999988822 2223444444432 12223333334 2 3688888888 99999997
Q ss_pred C
Q 016564 348 G 348 (387)
Q Consensus 348 G 348 (387)
+
T Consensus 188 a 188 (202)
T cd04726 188 A 188 (202)
T ss_pred h
Confidence 6
No 325
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=26.83 E-value=1.6e+02 Score=27.44 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHhhHhcCCCEEEEcCCCC--------HHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-----cCeEEE
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKD--------AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGAMV 345 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~s--------a~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-----sDGImI 345 (387)
.+.++...+.|++.|.+--+.. .+-+.++++.. ++++|+ --|+.+.+++.+. +||+|+
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~-----~ipvia----~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAV-----PIPVIA----SGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhC-----CCCEEE----eCCCCCHHHHHHHHHcCCccEEEE
Q ss_pred cCCcccccCCCCcH
Q 016564 346 ARGDLGAELPIEEV 359 (387)
Q Consensus 346 aRGDLg~elg~e~v 359 (387)
||+=+--.+++++.
T Consensus 220 g~a~~~~~~~~~~~ 233 (233)
T PRK00748 220 GRALYEGKFDLAEA 233 (233)
T ss_pred EHHHHcCCcCcccC
No 326
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=26.82 E-value=3.1e+02 Score=27.79 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=28.6
Q ss_pred HHHHHhhHhcCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCceE
Q 016564 279 WDDIKFGVDNKVDFYAVSF-VKDAQVVHELKNYLKSCGADIHV 320 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSf-V~sa~dV~~l~~~L~~~g~~i~I 320 (387)
.++++.+.++|+|.|.+.+ +...+.+.+.-++.++.|..+.+
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~ 133 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVG 133 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEE
Confidence 5679999999999987764 44445555555666666765443
No 327
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=26.77 E-value=2.7e+02 Score=25.78 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=38.6
Q ss_pred HHHHhhHhcCCCEEEE-c-----CCCC--HHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcCCcc
Q 016564 280 DDIKFGVDNKVDFYAV-S-----FVKD--AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDL 350 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~l-S-----fV~s--a~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaRGDL 350 (387)
+.++.+.+.|+|+|.+ + .... ......++++.+.. +++|++- =-....+|+.++++. +|||+++++=+
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~-GGI~~~~~v~~~l~~GadgV~vgS~l~ 189 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAA-GGIADGRGIAAALALGADGVQMGTRFL 189 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEE-CCCCCHHHHHHHHHcCCcEEEEchhhh
Confidence 5567777889999876 2 1111 12233333322211 3455542 112223667776666 99999998765
Q ss_pred ccc
Q 016564 351 GAE 353 (387)
Q Consensus 351 g~e 353 (387)
...
T Consensus 190 ~~~ 192 (236)
T cd04730 190 ATE 192 (236)
T ss_pred cCc
Confidence 443
No 328
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=26.59 E-value=92 Score=27.28 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCceeEeecCCCCHH
Q 016564 124 EMIWKLAEAGMNVARLNMSHGDHA 147 (387)
Q Consensus 124 e~i~~Li~aGm~v~RiN~SHg~~e 147 (387)
..++.|-+.|++|.|+|+++-...
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~a 54 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQA 54 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTH
T ss_pred HHHHHHHhCCceEEEEccccCHHH
Confidence 467889999999999999986444
No 329
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=26.37 E-value=1.9e+02 Score=23.62 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=46.9
Q ss_pred HHHHhhHhcCCCEEEEcC--CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHh---hcCeEEEcCCccc
Q 016564 280 DDIKFGVDNKVDFYAVSF--VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT---ASDGAMVARGDLG 351 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSf--V~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~---~sDGImIaRGDLg 351 (387)
+..+.+.+.++|.|++|. ..+.....++.+.+++.+.++.+++= -+.+-.+-+++++ ..|.+++|-|+.+
T Consensus 42 ~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G--G~~~t~~~~~~l~~~~~~D~vv~GegE~~ 116 (121)
T PF02310_consen 42 ELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG--GPHATADPEEILREYPGIDYVVRGEGEEA 116 (121)
T ss_dssp HHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE--ESSSGHHHHHHHHHHHTSEEEEEETTSSH
T ss_pred HHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE--CCchhcChHHHhccCcCcceecCCChHHh
Confidence 344566778999999986 66677777787888777777655532 1122233455554 4699999998865
No 330
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=26.26 E-value=2e+02 Score=28.30 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=50.9
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEE
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMV 345 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImI 345 (387)
.|.+.++.=++.|+||++--++=+++.+.+..+.+.+.|-+++|++=|=-...+.++.-+.. ..|+-|
T Consensus 149 ~d~~~L~~Ki~aGA~f~iTQ~~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~-~~Gi~v 216 (281)
T TIGR00677 149 LDLKYLKEKVDAGADFIITQLFYDVDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAK-WSKTKI 216 (281)
T ss_pred HHHHHHHHHHHcCCCEeeccceecHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHh-cCCCCC
Confidence 46667777778999999999999999999999888888878888887755555555555533 224444
No 331
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=26.16 E-value=2.1e+02 Score=26.66 Aligned_cols=59 Identities=29% Similarity=0.444 Sum_probs=42.0
Q ss_pred EecCCCEEEEEecC--CCCC--ccE-EEeccCCccc--ccCcCCEEEEeC--CeEEEEEEEEeCCeEE
Q 016564 189 TLTSGQEFTFTIQR--GVGS--AEC-VSVNYDDFVN--DVEVGDMLLVDG--GMMSLLVKSKTEDSVK 247 (387)
Q Consensus 189 ~Lk~G~~v~lt~~~--~~g~--~~~-i~v~~~~l~~--~v~~Gd~IliDD--G~I~l~V~~v~~d~v~ 247 (387)
-++.|+++++++.+ .+|. ++. -.++-..|-. .+++|..+.+++ |.+..+|+++.++.+.
T Consensus 52 g~~~Ge~~~V~IpPE~AfGe~~~~lvq~vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~ 119 (174)
T COG1047 52 GKEVGEEFTVEIPPEDAFGEYDPDLVQRVPRDEFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRVT 119 (174)
T ss_pred CCCCCceeEEEeCchHhcCCCChHHeEEecHHHhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEEE
Confidence 46789999999854 3442 222 2344445555 589999999975 5889999999988764
No 332
>PRK01362 putative translaldolase; Provisional
Probab=26.16 E-value=4.1e+02 Score=25.31 Aligned_cols=59 Identities=15% Similarity=0.301 Sum_probs=40.6
Q ss_pred HHhhHhcCCCEEEEcCCCCHHH--------HHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEc
Q 016564 282 IKFGVDNKVDFYAVSFVKDAQV--------VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVA 346 (387)
Q Consensus 282 I~~a~~~gvD~I~lSfV~sa~d--------V~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIa 346 (387)
...+.+.|++|| .|||...+| ++++.++++..+.+.+|++- ++.|.+++.++ +|.+-+.
T Consensus 115 a~~Aa~aGa~yi-spyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaA-----S~r~~~~v~~~~~~G~d~iTi~ 185 (214)
T PRK01362 115 ALLAAKAGATYV-SPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAA-----SVRHPMHVLEAALAGADIATIP 185 (214)
T ss_pred HHHHHhcCCcEE-EeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEe-----ecCCHHHHHHHHHcCCCEEecC
Confidence 445677899955 588887765 45667777777767777753 66777777764 5666554
No 333
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=26.14 E-value=40 Score=32.70 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=23.5
Q ss_pred CCCC--CCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHH
Q 016564 117 GPST--NTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVK 157 (387)
Q Consensus 117 GPss--~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR 157 (387)
||.+ .+.+++++-.++|++-. +-.||--+.....-++.|+
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~i-VaTsHh~~g~y~n~~~~v~ 56 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKI-VATSHHLHGRYENPIEKVK 56 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEE-eecccccCCccCChHHHHH
Confidence 6765 34678888889998865 3556643333333333333
No 334
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=25.60 E-value=3e+02 Score=22.47 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 303 dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
-+..+++++.+.|-+..|.+- ++..+++-..-.|.|+++| .+.+.++++-+.+...++|+..|+.
T Consensus 15 ~~~ki~~~~~~~~~~~~v~~~-----~~~~~~~~~~~~Diil~~P----------qv~~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 15 LVKKMKKAAEKRGIDAEIEAV-----PESELEEYIDDADVVLLGP----------QVRYMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred HHHHHHHHHHHCCCceEEEEe-----cHHHHHHhcCCCCEEEECh----------hHHHHHHHHHHHhccCCCcEEEcCh
Confidence 456778888877766444332 3333444455578888863 5777788888888899999877765
Q ss_pred c
Q 016564 383 F 383 (387)
Q Consensus 383 ~ 383 (387)
.
T Consensus 80 ~ 80 (96)
T cd05564 80 M 80 (96)
T ss_pred H
Confidence 3
No 335
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=25.57 E-value=2.9e+02 Score=21.50 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=38.1
Q ss_pred CeeeecCCCCCeEecCCCEEEEEecCC-CCCccEEEeccCCcccccCcC-CEEEEeCCeEEEEEEEE---eCCeEEEEEE
Q 016564 177 PEVRSGDLPQPITLTSGQEFTFTIQRG-VGSAECVSVNYDDFVNDVEVG-DMLLVDGGMMSLLVKSK---TEDSVKCEVV 251 (387)
Q Consensus 177 PkIRtG~l~~~i~Lk~G~~v~lt~~~~-~g~~~~i~v~~~~l~~~v~~G-d~IliDDG~I~l~V~~v---~~d~v~c~V~ 251 (387)
|+|+.......+....|+.+.|+..-. .-.....|.-.... +..+ .+..+.+..-.|.+..+ +.+...|.+.
T Consensus 2 p~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 78 (95)
T cd05730 2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEP---IESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAE 78 (95)
T ss_pred CccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEE---CcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEE
Confidence 667776544456788999999987632 11222333211111 1222 33333322223444443 3457899888
Q ss_pred EC
Q 016564 252 DG 253 (387)
Q Consensus 252 ~g 253 (387)
|.
T Consensus 79 N~ 80 (95)
T cd05730 79 NK 80 (95)
T ss_pred cC
Confidence 75
No 336
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=25.56 E-value=2.5e+02 Score=21.73 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCC
Q 016564 121 NTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKD 165 (387)
Q Consensus 121 ~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~ 165 (387)
++...+.+.++.| ++.=+|+++-+.+..+++++.+.-+.....+
T Consensus 10 ~D~~~i~~~l~~g-~~Vivnl~~l~~~~~~Ri~Dfl~G~~~al~G 53 (73)
T PF04472_consen 10 EDAREIVDALREG-KIVIVNLENLDDEEAQRILDFLSGAVYALDG 53 (73)
T ss_dssp GGHHHHHHHHHTT---EEEE-TTS-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcC-CEEEEECCCCCHHHHHHHHHHHhchheeeCC
Confidence 5667788999999 5668999999999999999999887765544
No 337
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=25.46 E-value=2.5e+02 Score=28.81 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=40.9
Q ss_pred CCCccc-HHHHHhhHhcCCCEEEEcCCC--------------C---HHHHHHHHHHHHhcCCCceEE--EecCChhhhhc
Q 016564 273 SITEKD-WDDIKFGVDNKVDFYAVSFVK--------------D---AQVVHELKNYLKSCGADIHVI--VKIESADSIPN 332 (387)
Q Consensus 273 ~LTe~D-~~dI~~a~~~gvD~I~lSfV~--------------s---a~dV~~l~~~L~~~g~~i~II--AKIEt~~gv~N 332 (387)
.+|..| .+.++...+.|+|+|-+|--. . ...+..+++.+ +++|+ -.|-|+ +.
T Consensus 248 g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~~G~i~~~---~~ 319 (382)
T cd02931 248 GRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-----DVPVIMAGRMEDP---EL 319 (382)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC-----CCCEEEeCCCCCH---HH
Confidence 456566 345566667899999987211 0 01223333322 33444 445543 45
Q ss_pred HHHHHhh--cCeEEEcCCccc
Q 016564 333 LHSIITA--SDGAMVARGDLG 351 (387)
Q Consensus 333 L~eIl~~--sDGImIaRGDLg 351 (387)
.+++++. +|.|++||+=|+
T Consensus 320 ~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 320 ASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred HHHHHHcCCCCeeeechHhHh
Confidence 6777764 899999998443
No 338
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=25.33 E-value=2.2e+02 Score=28.81 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=32.0
Q ss_pred eEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHH
Q 016564 111 KIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQ 150 (387)
Q Consensus 111 KII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~ 150 (387)
.+-+...|.+-+.|.++.|.++|++-+-|.+-.++.+..+
T Consensus 96 e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~ 135 (375)
T PRK05628 96 EVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLA 135 (375)
T ss_pred EEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 4555567888999999999999999888777777766553
No 339
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=25.32 E-value=2.3e+02 Score=27.25 Aligned_cols=81 Identities=9% Similarity=0.205 Sum_probs=49.4
Q ss_pred hhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHH
Q 016564 284 FGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQ 363 (387)
Q Consensus 284 ~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Q 363 (387)
.++..|.++|-+--.++. ...+...+.++ +...++ +.++.+++++...|.+.|+.| |+.... .
T Consensus 46 ~~~~~g~~~v~~~~~~~~------~~~i~~~~pe~-~~~~~~--~~~~~~~~~~~~~davvig~G-l~~~~~-------~ 108 (272)
T TIGR00196 46 AALRAGAGLVTVAAPENV------ITLINSVSPEL-IVHRLG--WKVDEDEELLERYDVVVIGPG-LGQDPS-------F 108 (272)
T ss_pred HHHHhCCCeEEEEEchhh------HHHHhhcCCEE-EEecch--hhHHHHHhhhccCCEEEEcCC-CCCCHH-------H
Confidence 345668888777644422 11233334443 334443 356777777777899999877 443222 5
Q ss_pred HHHHHHHHHCCCCcccccc
Q 016564 364 VVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 364 k~II~~c~aaGKp~g~id~ 382 (387)
.++++.++++++|+ .+|+
T Consensus 109 ~~l~~~~~~~~~pv-VlDa 126 (272)
T TIGR00196 109 KKAVEEVLELDKPV-VLDA 126 (272)
T ss_pred HHHHHHHHhcCCCE-EEEh
Confidence 56888888899985 3554
No 340
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=25.28 E-value=3.1e+02 Score=27.04 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=22.6
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHh
Q 016564 292 FYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT 338 (387)
Q Consensus 292 ~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~ 338 (387)
+|-++-..++.....+..++. .|.+--+++|+||++-+..+.+.+.
T Consensus 63 ~VRIn~~~~~~~~~di~~~l~-~g~~givlPKv~s~~~v~~~~~~l~ 108 (288)
T TIGR01588 63 VVRINGLDTPFGLADIKAVVK-AGVDVVRLPKTDTAEDIHELEKLIE 108 (288)
T ss_pred EEEECCCCChhHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHHHH
Confidence 444444444433334444332 2334445566666666666655554
No 341
>PRK06852 aldolase; Validated
Probab=25.24 E-value=1.6e+02 Score=29.74 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=49.1
Q ss_pred HhhHhcCCCEEEEcCC-----CCHHHHHHHHHHHHhcCCCceEE---EecCChhhhhcHHHHHh-h-cCeEEEcCCcccc
Q 016564 283 KFGVDNKVDFYAVSFV-----KDAQVVHELKNYLKSCGADIHVI---VKIESADSIPNLHSIIT-A-SDGAMVARGDLGA 352 (387)
Q Consensus 283 ~~a~~~gvD~I~lSfV-----~sa~dV~~l~~~L~~~g~~i~II---AKIEt~~gv~NL~eIl~-~-sDGImIaRGDLg~ 352 (387)
..+.+.|+|+|=+.|. .+++.++++.+ ..|.-.-|| .|....+-++.+.+.+. . +-|+.+||.=+--
T Consensus 195 RiaaELGADIVKv~y~~~~~~g~~e~f~~vv~---~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~ 271 (304)
T PRK06852 195 GVAACLGADFVKVNYPKKEGANPAELFKEAVL---AAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQK 271 (304)
T ss_pred HHHHHHcCCEEEecCCCcCCCCCHHHHHHHHH---hCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcC
Confidence 4567899999999999 66666666544 233333344 36655678888888887 4 6799999986655
Q ss_pred cCC
Q 016564 353 ELP 355 (387)
Q Consensus 353 elg 355 (387)
+-+
T Consensus 272 ~~p 274 (304)
T PRK06852 272 PLD 274 (304)
T ss_pred CCc
Confidence 554
No 342
>PLN02591 tryptophan synthase
Probab=24.86 E-value=6.5e+02 Score=24.49 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=53.5
Q ss_pred HHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEE--EcCCcccccCCC-C
Q 016564 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAM--VARGDLGAELPI-E 357 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGIm--IaRGDLg~elg~-e 357 (387)
-++.+.+.|+|++++|=. ..++..++++.+++.|- ..|.-+=---.-+.+..|++.++|++ |++ .|+. |. .
T Consensus 98 F~~~~~~aGv~GviipDL-P~ee~~~~~~~~~~~gl--~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvT-G~~~ 171 (250)
T PLN02591 98 FMATIKEAGVHGLVVPDL-PLEETEALRAEAAKNGI--ELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVT-GARA 171 (250)
T ss_pred HHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCc-CCCc
Confidence 456778899999999966 35677777777765543 34444411112456888888887765 232 1111 11 2
Q ss_pred cHHHHHHHHHHHHHHC-CCCc
Q 016564 358 EVPLLQVVFISDIRAM-PRMS 377 (387)
Q Consensus 358 ~v~~~Qk~II~~c~aa-GKp~ 377 (387)
.++...+..++.++++ ++|+
T Consensus 172 ~~~~~~~~~i~~vk~~~~~Pv 192 (250)
T PLN02591 172 SVSGRVESLLQELKEVTDKPV 192 (250)
T ss_pred CCchhHHHHHHHHHhcCCCce
Confidence 3344556666666653 6665
No 343
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=24.85 E-value=1.6e+02 Score=29.29 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=54.7
Q ss_pred cccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEE
Q 016564 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMV 345 (387)
Q Consensus 276 e~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImI 345 (387)
+.|.+.++.=+++|+||+.--++=+++.+....+.+.+.|-+++|++=|==...+.++.-+. ...|+-|
T Consensus 163 ~~dl~~Lk~K~~aGA~~~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~-~~~Gv~v 231 (296)
T PRK09432 163 QADLINLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFA-DMTNVRI 231 (296)
T ss_pred HHHHHHHHHHHHcCCCeeecccccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHH-HccCCCC
Confidence 35667788888999999999999999999999999988888888988887777777776664 3334433
No 344
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=24.83 E-value=2.8e+02 Score=28.68 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=55.6
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCH------HHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEcC
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDA------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVAR 347 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa------~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIaR 347 (387)
+.+|.+.+++.|+|+|.+|..--. ..+..+.+.....+ +.||+- -||.+-.+|+++ +|++|+||
T Consensus 246 ~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~--~~vi~d----GGIr~g~Dv~KALaLGA~aV~iGr 319 (361)
T cd04736 246 TAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATY--KPVLID----SGIRRGSDIVKALALGANAVLLGR 319 (361)
T ss_pred CHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhC--CeEEEe----CCCCCHHHHHHHHHcCCCEEEECH
Confidence 556788899999999998875311 12444444433222 555543 266666677665 89999999
Q ss_pred Ccccc--cCCCCc----HHHHHHHHHHHHHHCCCC
Q 016564 348 GDLGA--ELPIEE----VPLLQVVFISDIRAMPRM 376 (387)
Q Consensus 348 GDLg~--elg~e~----v~~~Qk~II~~c~aaGKp 376 (387)
.=|-. ..|-+. +..++.++-......|..
T Consensus 320 ~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~ 354 (361)
T cd04736 320 ATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCP 354 (361)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88722 224332 233445555555555543
No 345
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=24.82 E-value=1.9e+02 Score=26.86 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=38.7
Q ss_pred cHHHHHhhHhcCCCEEEEc--CCCCHH--HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEc
Q 016564 278 DWDDIKFGVDNKVDFYAVS--FVKDAQ--VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVA 346 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lS--fV~sa~--dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIa 346 (387)
+.+.++.+.+.|+|+|.+- ....++ .+.++.+.+.+.+ ++.+++.+.|++-...+.+ .-+|.+.+.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~--~G~d~i~~~ 150 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAK--LGFDIIGTT 150 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHH--cCCCEEEcc
Confidence 3457788899999987662 222232 5566666666656 6778887766543322211 116776553
No 346
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=24.80 E-value=6.4e+02 Score=24.39 Aligned_cols=62 Identities=24% Similarity=0.341 Sum_probs=37.2
Q ss_pred HHHhhHhcCCCEEEEcC------------CCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-----cCeE
Q 016564 281 DIKFGVDNKVDFYAVSF------------VKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-----SDGA 343 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSf------------V~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-----sDGI 343 (387)
..+.+.+.|+|+|=+.| -.+++.+.++-+.+.+. -++.|++||= + .+++..+|+.. +|+|
T Consensus 107 ~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl~-~-~~~~~~~~a~~~~~~G~d~i 183 (296)
T cd04740 107 VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKLT-P-NVTDIVEIARAAEEAGADGL 183 (296)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEeC-C-CchhHHHHHHHHHHcCCCEE
Confidence 33455667899997743 35666666655555443 2678999982 2 23345555542 6877
Q ss_pred EE
Q 016564 344 MV 345 (387)
Q Consensus 344 mI 345 (387)
.+
T Consensus 184 ~~ 185 (296)
T cd04740 184 TL 185 (296)
T ss_pred EE
Confidence 55
No 347
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=24.66 E-value=1.3e+02 Score=30.24 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCCCcccHHHH-HhhHhcCCCEEEEcC-----------------------CCCHHHHHHHHHHHHhcCCCceEEEecCCh
Q 016564 272 PSITEKDWDDI-KFGVDNKVDFYAVSF-----------------------VKDAQVVHELKNYLKSCGADIHVIVKIESA 327 (387)
Q Consensus 272 p~LTe~D~~dI-~~a~~~gvD~I~lSf-----------------------V~sa~dV~~l~~~L~~~g~~i~IIAKIEt~ 327 (387)
|.++..+...+ +.+.+.|+|+|.+.. ...+..++.++.+-+..+.++.|++ .
T Consensus 211 ~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~----~ 286 (327)
T cd04738 211 PDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIG----V 286 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEE----E
Q ss_pred hhhhcHHHHHhh----cCeEEEcCC
Q 016564 328 DSIPNLHSIITA----SDGAMVARG 348 (387)
Q Consensus 328 ~gv~NL~eIl~~----sDGImIaRG 348 (387)
-||.+.++..+. +|+|||||+
T Consensus 287 GGI~t~~da~e~l~aGAd~V~vg~~ 311 (327)
T cd04738 287 GGISSGEDAYEKIRAGASLVQLYTG 311 (327)
T ss_pred CCCCCHHHHHHHHHcCCCHHhccHH
No 348
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=24.64 E-value=4.5e+02 Score=22.53 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=41.8
Q ss_pred HHhhHhcCCCEEEEcCCCC------HHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcCCcccc
Q 016564 282 IKFGVDNKVDFYAVSFVKD------AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVARGDLGA 352 (387)
Q Consensus 282 I~~a~~~gvD~I~lSfV~s------a~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaRGDLg~ 352 (387)
.+++.+.|+|+|.++...- .+.++.+++.+ .+..++.++.+........ +.+. +|.+.+..+.-+.
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~ 149 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGG 149 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCC
Confidence 4677889999999998873 33444444433 3678888887655443221 2222 7899887765543
No 349
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=24.55 E-value=4.4e+02 Score=22.36 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=30.2
Q ss_pred eEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHH
Q 016564 111 KIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQK 151 (387)
Q Consensus 111 KII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~ 151 (387)
++-+.......+.+.++.|.++|++...+++-..++..+..
T Consensus 76 ~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~ 116 (204)
T cd01335 76 EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADK 116 (204)
T ss_pred eEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHH
Confidence 33333334444799999999999999999998887775543
No 350
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.42 E-value=2.2e+02 Score=24.85 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=33.9
Q ss_pred HHHHhhHhcCCCEEEEcCCC--CHHHHHHHHHHHHhcCC-CceEEEe
Q 016564 280 DDIKFGVDNKVDFYAVSFVK--DAQVVHELKNYLKSCGA-DIHVIVK 323 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~--sa~dV~~l~~~L~~~g~-~i~IIAK 323 (387)
+-++.+.+.++|+|++|-.. +.+.+.++.+.|++.+. +++|++=
T Consensus 44 ~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred HHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 45678889999999998865 67778888888887765 5667763
No 351
>PRK14057 epimerase; Provisional
Probab=24.38 E-value=2.7e+02 Score=27.42 Aligned_cols=71 Identities=8% Similarity=0.102 Sum_probs=52.0
Q ss_pred HHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCC---------CceEEEecCChhhhhcHHHHHhhcCeEEEcCCc
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGA---------DIHVIVKIESADSIPNLHSIITASDGAMVARGD 349 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~---------~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGD 349 (387)
...++.-.+.|+|+|.+- ++...++...-+++++.|. ...|..+-+| -++.++.++...|.|+|
T Consensus 88 ~~~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLv---- 160 (254)
T PRK14057 88 WTAAQACVKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQL---- 160 (254)
T ss_pred HHHHHHHHHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEE----
Confidence 335666678899988775 4555667777777887775 3678888888 56779999999999988
Q ss_pred ccccCCC
Q 016564 350 LGAELPI 356 (387)
Q Consensus 350 Lg~elg~ 356 (387)
++++-|+
T Consensus 161 MtV~PGf 167 (254)
T PRK14057 161 LAVNPGY 167 (254)
T ss_pred EEECCCC
Confidence 4555554
No 352
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=24.38 E-value=3.1e+02 Score=26.97 Aligned_cols=101 Identities=14% Similarity=-0.025 Sum_probs=58.2
Q ss_pred CCcccHHHHHhh-Hh-cCCCEEEEc-CCCCHHHHHHHHHHHHhc---C--CCceEEEecCChhhhhcHHHHHhh-cCeE-
Q 016564 274 ITEKDWDDIKFG-VD-NKVDFYAVS-FVKDAQVVHELKNYLKSC---G--ADIHVIVKIESADSIPNLHSIITA-SDGA- 343 (387)
Q Consensus 274 LTe~D~~dI~~a-~~-~gvD~I~lS-fV~sa~dV~~l~~~L~~~---g--~~i~IIAKIEt~~gv~NL~eIl~~-sDGI- 343 (387)
+|.+++..|-.. ++ .|+|.|=+. |.-++++.+.++++.+.. + ....+++.+....+++. .+++ .|.|
T Consensus 16 ~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---A~~~g~~~i~ 92 (280)
T cd07945 16 FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDW---IKSAGAKVLN 92 (280)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHH---HHHCCCCEEE
Confidence 555666666555 35 499999885 447997777777765422 1 13566666655544433 3333 4533
Q ss_pred -EEcCCcccccC----CCCcHHHHHHHHHHHHHHCCCCc
Q 016564 344 -MVARGDLGAEL----PIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 344 -mIaRGDLg~el----g~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
++.-.|.-..- ..++.....+++++.|+.+|..+
T Consensus 93 i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v 131 (280)
T cd07945 93 LLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV 131 (280)
T ss_pred EEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE
Confidence 33333332221 22344555678889999988764
No 353
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=24.36 E-value=75 Score=21.11 Aligned_cols=19 Identities=16% Similarity=-0.125 Sum_probs=14.2
Q ss_pred ccHHHHHhhHhcCCCEEEE
Q 016564 277 KDWDDIKFGVDNKVDFYAV 295 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~l 295 (387)
...+.++.+++.|+|+|.-
T Consensus 8 d~~~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 8 DKPASWRELLDLGVDGIMT 26 (30)
T ss_dssp -SHHHHHHHHHHT-SEEEE
T ss_pred CCHHHHHHHHHcCCCEeeC
Confidence 4567788999999999974
No 354
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=24.34 E-value=3.4e+02 Score=25.01 Aligned_cols=88 Identities=11% Similarity=0.165 Sum_probs=54.2
Q ss_pred cCCCEEEEcCCCC--HHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHH
Q 016564 288 NKVDFYAVSFVKD--AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVV 365 (387)
Q Consensus 288 ~gvD~I~lSfV~s--a~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~ 365 (387)
.+...+.+|.... .+.....++.+.+.|.+...+.-+++ ..-..+.+.+..+|+|+++-||=..-+..-+=....+.
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~-~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~ 106 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT-ANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDA 106 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC-CCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHH
Confidence 3677777776653 35677788888887776555555554 23345566777899999999985433321000013345
Q ss_pred HHHHHHHCCCCc
Q 016564 366 FISDIRAMPRMS 377 (387)
Q Consensus 366 II~~c~aaGKp~ 377 (387)
|.+.++ .|+++
T Consensus 107 i~~~~~-~G~v~ 117 (210)
T cd03129 107 ILKRVA-RGVVI 117 (210)
T ss_pred HHHHHH-cCCeE
Confidence 666666 67664
No 355
>PRK08999 hypothetical protein; Provisional
Probab=24.23 E-value=1.9e+02 Score=28.24 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCC--------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEE
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFV--------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAM 344 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV--------~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGIm 344 (387)
+|-++.+++..+.+.|+|||+++-+ ..+-.+..++++.......+..+.=| ..+|+.+++++ +|||-
T Consensus 231 ~S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI----~~~~~~~~~~~g~~gva 306 (312)
T PRK08999 231 ASCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL----GPGDLEEAREHGAQGIA 306 (312)
T ss_pred EecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC----CHHHHHHHHHhCCCEEE
Q ss_pred EcCC
Q 016564 345 VARG 348 (387)
Q Consensus 345 IaRG 348 (387)
+-++
T Consensus 307 ~i~~ 310 (312)
T PRK08999 307 GIRG 310 (312)
T ss_pred EEEE
No 356
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=24.23 E-value=3.9e+02 Score=25.75 Aligned_cols=50 Identities=6% Similarity=0.025 Sum_probs=34.6
Q ss_pred HhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh
Q 016564 283 KFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (387)
Q Consensus 283 ~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~ 339 (387)
+.-.+.|+|+|+++-.++.++++++.+.++ .++.... ++. -.+++|+.+.
T Consensus 162 ~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~-----~Pl~v~~-~~~-~~~~~eL~~l 211 (238)
T PF13714_consen 162 KAYAEAGADMIFIPGLQSEEEIERIVKAVD-----GPLNVNP-GPG-TLSAEELAEL 211 (238)
T ss_dssp HHHHHTT-SEEEETTSSSHHHHHHHHHHHS-----SEEEEET-TSS-SS-HHHHHHT
T ss_pred HHHHHcCCCEEEeCCCCCHHHHHHHHHhcC-----CCEEEEc-CCC-CCCHHHHHHC
Confidence 444678999999999999999988887772 4455555 433 2677777654
No 357
>PLN02826 dihydroorotate dehydrogenase
Probab=24.14 E-value=3.8e+02 Score=28.08 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=18.7
Q ss_pred CCceEEEecCChhhhhcHHHHHh---h--cCeEEEc
Q 016564 316 ADIHVIVKIESADSIPNLHSIIT---A--SDGAMVA 346 (387)
Q Consensus 316 ~~i~IIAKIEt~~gv~NL~eIl~---~--sDGImIa 346 (387)
..++|++||=--..-+.+++|+. . +|||++.
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~ 296 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIIS 296 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 35789999932222234455544 2 7999773
No 358
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=24.09 E-value=3.6e+02 Score=27.83 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=26.0
Q ss_pred ccccCcCCEEEEeCCeEEEEEEEEeCC-eEEEEEE
Q 016564 218 VNDVEVGDMLLVDGGMMSLLVKSKTED-SVKCEVV 251 (387)
Q Consensus 218 ~~~v~~Gd~IliDDG~I~l~V~~v~~d-~v~c~V~ 251 (387)
-+.+++||+|++++| +..+|.+..++ ....+..
T Consensus 99 ~kr~k~G~~i~f~~~-l~a~v~e~~~~g~~~l~F~ 132 (348)
T COG0809 99 SKRLKAGDEIYFGDG-LKATVLERLEHGLRLLEFD 132 (348)
T ss_pred ccCCCCCCEEEeCCC-ceEEEEEecCCceEEEEEe
Confidence 467899999999999 88888888776 5555554
No 359
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=23.98 E-value=1.8e+02 Score=29.80 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCcccHHHHHhhHhcCCCEEEEcCCC--------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEE
Q 016564 274 ITEKDWDDIKFGVDNKVDFYAVSFVK--------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAM 344 (387)
Q Consensus 274 LTe~D~~dI~~a~~~gvD~I~lSfV~--------sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGIm 344 (387)
.|-++.+++..+.+.|+|||+++-+- .+-.+..++.+.......+..+.-|- .+|+.+++.+ +|||-
T Consensus 245 ~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~----~~ni~~l~~~Ga~gVA 320 (347)
T PRK02615 245 RSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID----KSNIPEVLQAGAKRVA 320 (347)
T ss_pred EecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC----HHHHHHHHHcCCcEEE
Q ss_pred EcCC
Q 016564 345 VARG 348 (387)
Q Consensus 345 IaRG 348 (387)
+.++
T Consensus 321 visa 324 (347)
T PRK02615 321 VVRA 324 (347)
T ss_pred EeHH
No 360
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=23.65 E-value=3.2e+02 Score=29.27 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=30.0
Q ss_pred eEEEec-CCCCCCHHHHHHHHHhCCceeEeecCCCCHHHH
Q 016564 111 KIVCTI-GPSTNTREMIWKLAEAGMNVARLNMSHGDHASH 149 (387)
Q Consensus 111 KII~TI-GPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~ 149 (387)
.+.++. -|.+-+.|.++.|.++|++-+-||.-.++.+..
T Consensus 256 EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vL 295 (488)
T PRK08207 256 EFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETL 295 (488)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHH
Confidence 455555 488899999999999999977777766665544
No 361
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=23.55 E-value=2.4e+02 Score=28.20 Aligned_cols=62 Identities=8% Similarity=0.115 Sum_probs=39.3
Q ss_pred HHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEE-ecCCh-hhhhcHHHHHhh-cCeEEE
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV-KIESA-DSIPNLHSIITA-SDGAMV 345 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIA-KIEt~-~gv~NL~eIl~~-sDGImI 345 (387)
++-.+.-.+.|+|+|+++..++.++++++.+.+. .++++ .++.. ....+++++.+. ..-|.+
T Consensus 169 I~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~-----~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~ 233 (292)
T PRK11320 169 IERAQAYVEAGADMIFPEAMTELEMYRRFADAVK-----VPILANITEFGATPLFTTEELASAGVAMVLY 233 (292)
T ss_pred HHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcC-----CCEEEEeccCCCCCCCCHHHHHHcCCcEEEE
Confidence 3334455778999999999999999988877652 34444 33332 244567776654 333433
No 362
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=23.36 E-value=1.7e+02 Score=28.73 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=38.4
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCC------CHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh----cCeEEEc
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVK------DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA----SDGAMVA 346 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~------sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~----sDGImIa 346 (387)
++.++++.+++.|++.|.+..-. +.+...++..++. .+..+|+ |+ |+.+.+++... +||++||
T Consensus 166 h~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip---~~~~~is--eS--GI~~~~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 166 HNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIP---KDVIVIS--ES--GIKTPEDARRLARAGADAVLVG 238 (254)
T ss_dssp SSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSH---TTSEEEE--ES--S-SSHHHHHHHCTTT-SEEEES
T ss_pred CCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCc---cceeEEe--ec--CCCCHHHHHHHHHCCCCEEEEC
Confidence 56778999999999999987531 2223333333333 3444554 33 77777776654 7999998
Q ss_pred C
Q 016564 347 R 347 (387)
Q Consensus 347 R 347 (387)
.
T Consensus 239 e 239 (254)
T PF00218_consen 239 E 239 (254)
T ss_dssp H
T ss_pred H
Confidence 5
No 363
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=23.27 E-value=1.7e+02 Score=29.60 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=41.2
Q ss_pred HHHHhhHhcCCCEEEEcC--CCCH--------------HHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh--cC
Q 016564 280 DDIKFGVDNKVDFYAVSF--VKDA--------------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SD 341 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSf--V~sa--------------~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~--sD 341 (387)
+.++..-+.|+|+|.+|. .+.. +...++++. -+++|++ -+.....+.++++++. +|
T Consensus 228 ~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~-----v~iPVi~-~G~i~~~~~a~~~i~~g~~D 301 (353)
T cd02930 228 ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRA-----VDIPVIA-SNRINTPEVAERLLADGDAD 301 (353)
T ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHh-----CCCCEEE-cCCCCCHHHHHHHHHCCCCC
Confidence 444555668999999963 1111 111222222 2455555 4666677888888875 89
Q ss_pred eEEEcCCcccc
Q 016564 342 GAMVARGDLGA 352 (387)
Q Consensus 342 GImIaRGDLg~ 352 (387)
.|++||+=|+-
T Consensus 302 ~V~~gR~~l~d 312 (353)
T cd02930 302 MVSMARPFLAD 312 (353)
T ss_pred hhHhhHHHHHC
Confidence 99999986543
No 364
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=23.20 E-value=3.5e+02 Score=25.80 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=59.4
Q ss_pred ccCcCCEEEEeC--C-eEEEEEEEEeCCeEEEEEEECcEecCC--cceeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEE
Q 016564 220 DVEVGDMLLVDG--G-MMSLLVKSKTEDSVKCEVVDGGELKSR--RHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYA 294 (387)
Q Consensus 220 ~v~~Gd~IliDD--G-~I~l~V~~v~~d~v~c~V~~gG~L~s~--KgVn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~ 294 (387)
-+++||.|.+-| | ....++.+++++.+.+++...-..... ..+.+ -..+|. .++-...|+.+.+.|++-|.
T Consensus 31 R~~~Gd~v~v~~g~g~~~~a~i~~~~~~~~~~~i~~~~~~~~~~~~~i~l---~~al~K-~~~~d~il~katELGv~~i~ 106 (240)
T TIGR00046 31 RLKKGDKLKLLDGDGFIYHCEIKKISKKFVKCELLEGESEKRELPLKIHL---AIVLIK-GKKMEFIIRKLTELGVSKII 106 (240)
T ss_pred cCCCCCEEEEEeCCCCEEEEEEEEEcCCeEEEEEEecccCCCCCCcEEEE---EEeecC-CccHHHHHHHHHHcCCCEEE
Confidence 567899997644 3 355778888899888887644222111 11221 122332 34556677889999999765
Q ss_pred EcCCCCH---------HHHHHHHHHHHhcCC--CceEEEecCChhhhh
Q 016564 295 VSFVKDA---------QVVHELKNYLKSCGA--DIHVIVKIESADSIP 331 (387)
Q Consensus 295 lSfV~sa---------~dV~~l~~~L~~~g~--~i~IIAKIEt~~gv~ 331 (387)
.=+.+.. ......+..+.++-. .-..+.+|+.+..++
T Consensus 107 p~~s~rs~~~~~~~~~~k~~rw~~i~~eA~~Q~~r~~lP~i~~~~~l~ 154 (240)
T TIGR00046 107 PFNAERSVVKLDIEAIKKLERWQKIAIEAAEQSGRNIVPEIKPPKNLK 154 (240)
T ss_pred EEEeccceeccCchHHHHHHHHHHHHHHHHHhcCCCCCCEECCcCCHH
Confidence 4333322 123444444433211 123466777665544
No 365
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.15 E-value=5.4e+02 Score=24.93 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=30.3
Q ss_pred CceEEE--ecCChhhhhcHHHHHhh-cCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCC
Q 016564 317 DIHVIV--KIESADSIPNLHSIITA-SDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMP 374 (387)
Q Consensus 317 ~i~IIA--KIEt~~gv~NL~eIl~~-sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaG 374 (387)
++.||+ -|-|++ ++.+.+.+ +|+|+++|+=+. +..-+..+.+.+-+...++|
T Consensus 231 ~ipii~~GGI~~~~---da~~~l~~GAd~V~igra~l~---~p~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 231 EIPIIGVGGIASGE---DALEFLMAGASAVQVGTANFV---DPEAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred CCCEEEECCCCCHH---HHHHHHHcCCCEEEEchhhhc---ChHHHHHHHHHHHHHHHHcC
Confidence 456665 355543 33444444 899999999666 33334444455555555555
No 366
>PLN02540 methylenetetrahydrofolate reductase
Probab=23.14 E-value=1.8e+02 Score=31.99 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=49.1
Q ss_pred ccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHh
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIIT 338 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~ 338 (387)
+|.+.++.=+++|+|||+--++=+++.+....+.+.+.|-+++|++=|==.....++.-+..
T Consensus 157 ~dl~~Lk~KvdAGAdFiITQlfFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~ 218 (565)
T PLN02540 157 KDLAYLKEKVDAGADLIITQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTG 218 (565)
T ss_pred HHHHHHHHHHHcCCCEEeeccccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHh
Confidence 56777777788999999999999999999888888888878888887755555555555544
No 367
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=22.96 E-value=2.6e+02 Score=26.26 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=36.7
Q ss_pred cHHHHHhhHhcCCCEEEEcC-CCCHHHH--HHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh--cCeEEE
Q 016564 278 DWDDIKFGVDNKVDFYAVSF-VKDAQVV--HELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMV 345 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSf-V~sa~dV--~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~--sDGImI 345 (387)
+.+|++.+.++|+|++.+-| .+|+..| ..++++.......+..++=.- -+..+.+.++++. .|.|-+
T Consensus 12 ~~eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~-~~~~~~i~~~~~~~~~d~vQL 83 (210)
T PRK01222 12 TPEDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFV-NASDEEIDEIVETVPLDLLQL 83 (210)
T ss_pred cHHHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEe-CCCHHHHHHHHHhcCCCEEEE
Confidence 56789999999999999988 4455443 233444333333333222111 1233444555543 467666
No 368
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.90 E-value=5.9e+02 Score=26.10 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=37.1
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCCH---------------HHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKDA---------------QVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA 339 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~sa---------------~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~ 339 (387)
..+|++.+.++|+|.|.+.+--|. +.+.+..++..+.|..+.+-+.-.+..-.+.+.++++.
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~ 153 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKA 153 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHH
Confidence 356788889999999888876655 23333444555556554444444444445555555554
No 369
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.86 E-value=7.1e+02 Score=24.25 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=31.9
Q ss_pred EecCCCC--CCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHH
Q 016564 114 CTIGPST--NTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLV 156 (387)
Q Consensus 114 ~TIGPss--~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~i 156 (387)
.|.|-.+ .+.+.++.|.++|+|+.=|-+-..+|-.-..+|+.-
T Consensus 18 i~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a 62 (258)
T PRK13111 18 ITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAA 62 (258)
T ss_pred EeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHH
Confidence 4555332 457889999999999999999988877666666543
No 370
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=22.83 E-value=5.4e+02 Score=26.67 Aligned_cols=101 Identities=17% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCccc-HHHHHhhHhcCCCEEEEcCCCC-----HHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEc
Q 016564 274 ITEKD-WDDIKFGVDNKVDFYAVSFVKD-----AQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVA 346 (387)
Q Consensus 274 LTe~D-~~dI~~a~~~gvD~I~lSfV~s-----a~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIa 346 (387)
+|..+ .+.++.+.+.|+|+|.+....+ ...+..++++....+-.+.++-=| ..+|+.+.+++ +|++.+|
T Consensus 115 ~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI----~~~n~~~~l~aGAdgv~vG 190 (430)
T PRK07028 115 INVPDPVKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL----DAETAAKAVAAGADIVIVG 190 (430)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC----CHHHHHHHHHcCCCEEEEC
Q ss_pred CCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccce
Q 016564 347 RGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAFY 384 (387)
Q Consensus 347 RGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~~ 384 (387)
++=... ++....-+.+.+..+..--.- ||-.|
T Consensus 191 saI~~~----~d~~~~~~~l~~~i~~~~~~~--~~~~~ 222 (430)
T PRK07028 191 GNIIKS----ADVTEAARKIREAIDSGKPVK--IDKFK 222 (430)
T ss_pred hHHcCC----CCHHHHHHHHHHHHhccCCcc--ccccc
No 371
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=22.80 E-value=2.9e+02 Score=28.51 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=51.6
Q ss_pred cccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHH----------------HHhcCCCceEEEecCChhhhhcHHHHHhh
Q 016564 276 EKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNY----------------LKSCGADIHVIVKIESADSIPNLHSIITA 339 (387)
Q Consensus 276 e~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~----------------L~~~g~~i~IIAKIEt~~gv~NL~eIl~~ 339 (387)
+++++.+..|++.|+|.|.++- +++..++++ +...+.......+|.+++-.+.+.+....
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~~ 88 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAKE 88 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhcc
Confidence 6788899999999999998864 444444432 11223456778899999999999999888
Q ss_pred cCeEEEcCCc
Q 016564 340 SDGAMVARGD 349 (387)
Q Consensus 340 sDGImIaRGD 349 (387)
.|-++|--.|
T Consensus 89 ~~~viv~~~d 98 (344)
T PRK02290 89 VDYVIVEGRD 98 (344)
T ss_pred CCEEEEECCC
Confidence 8877774334
No 372
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=22.73 E-value=3.3e+02 Score=26.83 Aligned_cols=80 Identities=18% Similarity=0.327 Sum_probs=52.1
Q ss_pred cHHHHHhhHhcCCCEEEE-cCCC-----------CHHHHHHHHHHHHhcCCCceEEEecCChhhh----hcHHHHHhh--
Q 016564 278 DWDDIKFGVDNKVDFYAV-SFVK-----------DAQVVHELKNYLKSCGADIHVIVKIESADSI----PNLHSIITA-- 339 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~l-SfV~-----------sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv----~NL~eIl~~-- 339 (387)
-.+.+..|...|+|||-+ .|+. ++.++...|+.| +.+++|++-|--+.+. .+++|++..
T Consensus 91 ~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l---~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~ 167 (257)
T TIGR00259 91 AVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLL---GSEVKILADIVVKHAVHLGNRDLESIALDTV 167 (257)
T ss_pred CHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHc---CCCcEEEeceeecccCcCCCCCHHHHHHHHH
Confidence 355677788899999998 5552 445555555544 5689999877544443 467777763
Q ss_pred ----cCeEEEcCCcccccCCCCcHH
Q 016564 340 ----SDGAMVARGDLGAELPIEEVP 360 (387)
Q Consensus 340 ----sDGImIaRGDLg~elg~e~v~ 360 (387)
+||+++.----|.+..++.+.
T Consensus 168 ~~~~aDavivtG~~TG~~~d~~~l~ 192 (257)
T TIGR00259 168 ERGLADAVILSGKTTGTEVDLELLK 192 (257)
T ss_pred HhcCCCEEEECcCCCCCCCCHHHHH
Confidence 799999754455554444333
No 373
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=22.53 E-value=1.3e+02 Score=26.33 Aligned_cols=36 Identities=11% Similarity=-0.101 Sum_probs=29.6
Q ss_pred eEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 342 GAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 342 GImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
.+++|-.|+....+.+++..-.+.++..+++.|..+
T Consensus 64 ~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~ 99 (183)
T cd04501 64 IIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKV 99 (183)
T ss_pred EEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcE
Confidence 566788898877777788888889999999988875
No 374
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=22.41 E-value=7.3e+02 Score=24.33 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=56.9
Q ss_pred HHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCC-CcH
Q 016564 281 DIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPI-EEV 359 (387)
Q Consensus 281 dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~-e~v 359 (387)
-++.+.+.|+|++++|=.- .++-.++++.+.+.| +..|.-|=-.-.-+.+..|++.++|++=.-+=.|+ .|. ..+
T Consensus 107 F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~ 182 (259)
T PF00290_consen 107 FFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTEL 182 (259)
T ss_dssp HHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSC
T ss_pred HHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccc
Confidence 3556778899999999774 455667777776654 44454454444567799999998877643333333 222 345
Q ss_pred HHHHHHHHHHHHHCC-CCc
Q 016564 360 PLLQVVFISDIRAMP-RMS 377 (387)
Q Consensus 360 ~~~Qk~II~~c~aaG-Kp~ 377 (387)
+.-.+..++..|++. +|+
T Consensus 183 ~~~l~~~i~~ik~~~~~Pv 201 (259)
T PF00290_consen 183 PDELKEFIKRIKKHTDLPV 201 (259)
T ss_dssp HHHHHHHHHHHHHTTSS-E
T ss_pred hHHHHHHHHHHHhhcCcce
Confidence 555667777777766 554
No 375
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=22.32 E-value=1.7e+02 Score=27.41 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=37.1
Q ss_pred cHHHHHhhHhcCCCEEEEcCC-CCHHHH--HHHHHHHHhcCCC---ceEEEecCChhhhhcHHHHHhh--cCeEEEc
Q 016564 278 DWDDIKFGVDNKVDFYAVSFV-KDAQVV--HELKNYLKSCGAD---IHVIVKIESADSIPNLHSIITA--SDGAMVA 346 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV-~sa~dV--~~l~~~L~~~g~~---i~IIAKIEt~~gv~NL~eIl~~--sDGImIa 346 (387)
+.+|+..+.++|+|++.+=|. .|+..| ..++++....... +.|++ -+..+.+.+|++. .|.+-+-
T Consensus 10 ~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~----~~~~~~i~~~~~~~~~d~vQLH 82 (207)
T PRK13958 10 TIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVV----NPDLTTIEHILSNTSINTIQLH 82 (207)
T ss_pred cHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEe----CCCHHHHHHHHHhCCCCEEEEC
Confidence 567899999999999999884 455433 2333333322322 23332 1244455566554 4777763
No 376
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=22.31 E-value=3.3e+02 Score=23.90 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHhhHhcCCCEEEEcCCC---------CHHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh-cCeEEEc
Q 016564 279 WDDIKFGVDNKVDFYAVSFVK---------DAQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDGAMVA 346 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~---------sa~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~-sDGImIa 346 (387)
.+++..+.+.|+|+|.++.+. .+..+..++++... .+++|++- | + .+|+.+++.+ +||+.+|
T Consensus 105 ~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pv~a~GGi-~---~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 105 LEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL--VEIPVVAIGGI-T---PENAAEVLAAGADGVAVI 178 (196)
T ss_pred HHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--CCCCEEEECCC-C---HHHHHHHHHcCCCEEEEe
Confidence 356677788899999987542 23334444443322 23444443 4 2 2688888887 8999999
Q ss_pred CC
Q 016564 347 RG 348 (387)
Q Consensus 347 RG 348 (387)
++
T Consensus 179 ~~ 180 (196)
T cd00564 179 SA 180 (196)
T ss_pred hH
Confidence 76
No 377
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=22.31 E-value=4.2e+02 Score=22.53 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCcccccc
Q 016564 303 VVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKA 382 (387)
Q Consensus 303 dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~ 382 (387)
-++.+++.+.+.+.++.+-+.-++... .+..+.+.-.|-|+.+-.+ ...+..+.+.|+++|+|. |++
T Consensus 54 Ka~~~~~~l~~~~p~v~i~~~~~~~~~-~~~~~~~~~~diVi~~~d~----------~~~~~~l~~~~~~~~i~~--i~~ 120 (143)
T cd01483 54 KAEVAARRLNELNPGVNVTAVPEGISE-DNLDDFLDGVDLVIDAIDN----------IAVRRALNRACKELGIPV--IDA 120 (143)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHcCCCE--EEE
Confidence 345566777777766655443333222 2234555566766654332 467889999999999997 654
Q ss_pred c
Q 016564 383 F 383 (387)
Q Consensus 383 ~ 383 (387)
.
T Consensus 121 ~ 121 (143)
T cd01483 121 G 121 (143)
T ss_pred c
Confidence 3
No 378
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.21 E-value=2.6e+02 Score=27.24 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=34.0
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHH
Q 016564 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLV 156 (387)
Q Consensus 109 ~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~i 156 (387)
++|+.+-.-|...+.+.+.....+|++.+|+.+.-...+...++++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~a 118 (266)
T cd07944 71 NTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAI 118 (266)
T ss_pred CCEEEEEECCCCCCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHH
Confidence 678877776665678889999999999999987544444444444433
No 379
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=22.19 E-value=3.4e+02 Score=26.97 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=46.6
Q ss_pred CceEEEecC--CCCCC-----------HHHHHHHHHhCCceeEeecCC---C-----CHHHHHHHHHHHHHHHHhcCCCe
Q 016564 109 KTKIVCTIG--PSTNT-----------REMIWKLAEAGMNVARLNMSH---G-----DHASHQKVIDLVKEYNAQSKDNV 167 (387)
Q Consensus 109 ~TKII~TIG--Pss~~-----------~e~i~~Li~aGm~v~RiN~SH---g-----~~e~~~~~I~~iR~~~~~~~~~~ 167 (387)
+|+||+-+. |-|-+ .+...+|++.|.++.=|+.-- | ..+++.+++..|+...++. .
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~---~ 90 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF---E 90 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC---C
Confidence 577877763 33322 467889999999999999422 2 2357777777777665433 3
Q ss_pred eEEEEeCCCCee
Q 016564 168 IAIMLDTKGPEV 179 (387)
Q Consensus 168 i~I~lDL~GPkI 179 (387)
++|.+|+--|++
T Consensus 91 ~~ISIDT~~~~v 102 (282)
T PRK11613 91 VWISVDTSKPEV 102 (282)
T ss_pred CeEEEECCCHHH
Confidence 679999987764
No 380
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=22.16 E-value=3.4e+02 Score=27.44 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=38.7
Q ss_pred CCcccH-HHHHhhHhcC-CCEEEEcCCCC--------------------HHHHHHHHHHHHhcCCCceEEE--ecCChhh
Q 016564 274 ITEKDW-DDIKFGVDNK-VDFYAVSFVKD--------------------AQVVHELKNYLKSCGADIHVIV--KIESADS 329 (387)
Q Consensus 274 LTe~D~-~dI~~a~~~g-vD~I~lSfV~s--------------------a~dV~~l~~~L~~~g~~i~IIA--KIEt~~g 329 (387)
+|..|. +.++...+.| +|+|-+|--+. .+.+..+++.+ +++|++ .|-|+
T Consensus 225 ~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~ipvi~~G~i~~~-- 297 (343)
T cd04734 225 LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV-----DLPVFHAGRIRDP-- 297 (343)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc-----CCCEEeeCCCCCH--
Confidence 444443 4445555677 89999963111 12222333322 344554 35554
Q ss_pred hhcHHHHHhh--cCeEEEcCCcccc
Q 016564 330 IPNLHSIITA--SDGAMVARGDLGA 352 (387)
Q Consensus 330 v~NL~eIl~~--sDGImIaRGDLg~ 352 (387)
+.++++++. +|+||+||+=|+-
T Consensus 298 -~~~~~~l~~~~~D~V~~gR~~lad 321 (343)
T cd04734 298 -AEAEQALAAGHADMVGMTRAHIAD 321 (343)
T ss_pred -HHHHHHHHcCCCCeeeecHHhHhC
Confidence 345555654 8999999986553
No 381
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=21.84 E-value=3.3e+02 Score=24.58 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=40.9
Q ss_pred cHHHHHhhHhcCCCEEEEcCCCC------------HHHHHHHHHHHHhcCCCceEEEe--cCChhhhhcHHHHHhh-cCe
Q 016564 278 DWDDIKFGVDNKVDFYAVSFVKD------------AQVVHELKNYLKSCGADIHVIVK--IESADSIPNLHSIITA-SDG 342 (387)
Q Consensus 278 D~~dI~~a~~~gvD~I~lSfV~s------------a~dV~~l~~~L~~~g~~i~IIAK--IEt~~gv~NL~eIl~~-sDG 342 (387)
..+++..+.+.|+|+|.++-+.. .+.+.++++.+ .++.|+|- | | .+|+.+++++ +||
T Consensus 113 t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~v~a~GGI-~---~~~i~~~~~~Ga~g 184 (212)
T PRK00043 113 TLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV----GDIPIVAIGGI-T---PENAPEVLEAGADG 184 (212)
T ss_pred CHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEEECCc-C---HHHHHHHHHcCCCE
Confidence 45567777889999999864432 34444444433 22444433 5 2 2788888887 899
Q ss_pred EEEcCCc
Q 016564 343 AMVARGD 349 (387)
Q Consensus 343 ImIaRGD 349 (387)
+.++++=
T Consensus 185 v~~gs~i 191 (212)
T PRK00043 185 VAVVSAI 191 (212)
T ss_pred EEEeHHh
Confidence 9998763
No 382
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=21.81 E-value=5e+02 Score=24.93 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=63.4
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHH---------
Q 016564 291 DFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPL--------- 361 (387)
Q Consensus 291 D~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~--------- 361 (387)
-.|.+=-..++++...+.+.|-+.|-. .|=.-.-|+.+.+.+.++.+....++||-|=. +..+.+..
T Consensus 14 ~vI~Vlr~~~~e~a~~~a~Ali~gGi~-~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTV---L~~~q~~~a~~aGa~fi 89 (211)
T COG0800 14 PVVPVIRGDDVEEALPLAKALIEGGIP-AIEITLRTPAALEAIRALAKEFPEALIGAGTV---LNPEQARQAIAAGAQFI 89 (211)
T ss_pred CeeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEecCCCCHHHHHHHHHHhCcccEEccccc---cCHHHHHHHHHcCCCEE
Confidence 346666678888888888777654432 23356789999999999999888888887632 22222222
Q ss_pred ----HHHHHHHHHHHCCCCcccccccee
Q 016564 362 ----LQVVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 362 ----~Qk~II~~c~aaGKp~g~id~~~~ 385 (387)
+-.+++++|+.+|.|. +-|+.+
T Consensus 90 VsP~~~~ev~~~a~~~~ip~--~PG~~T 115 (211)
T COG0800 90 VSPGLNPEVAKAANRYGIPY--IPGVAT 115 (211)
T ss_pred ECCCCCHHHHHHHHhCCCcc--cCCCCC
Confidence 2379999999999997 666543
No 383
>PRK06033 hypothetical protein; Validated
Probab=21.75 E-value=1.8e+02 Score=23.53 Aligned_cols=66 Identities=9% Similarity=0.148 Sum_probs=38.5
Q ss_pred CeeEEEEeCCCCeeeecCCCCCeEecCCCEEEEEecCCCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEE
Q 016564 166 NVIAIMLDTKGPEVRSGDLPQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSK 241 (387)
Q Consensus 166 ~~i~I~lDL~GPkIRtG~l~~~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v 241 (387)
-++.+-..|...++...++ +.|++||.+.|.. ..+++-.++++...++. -.+-..+|+..++|+++
T Consensus 7 v~V~l~v~Lg~~~i~l~dl---L~L~~GDVI~L~~--~~~~~v~v~V~~~~~f~-----g~~G~~~~~~AV~I~~~ 72 (83)
T PRK06033 7 VSVELMVVLGRSSMPIHQV---LRMGRGAVIPLDA--TEADEVWILANNHPIAR-----GEVLIDRNRIAVEVTRA 72 (83)
T ss_pred ceEEEEEEEecccccHHHH---hCCCCCCEEEeCC--CCCCcEEEEECCEEEEE-----EEEEEECCEEEEEEEEh
Confidence 4577777777777777766 5688899888843 22333345554333322 11223556667766654
No 384
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=21.75 E-value=2.2e+02 Score=28.76 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=43.5
Q ss_pred CCcccH-HHHHhhHhcCCCEEEEcCCCC--------HHHHHHHHHHHHhcCCCceEE--EecCChhhhhcHHHHHhh--c
Q 016564 274 ITEKDW-DDIKFGVDNKVDFYAVSFVKD--------AQVVHELKNYLKSCGADIHVI--VKIESADSIPNLHSIITA--S 340 (387)
Q Consensus 274 LTe~D~-~dI~~a~~~gvD~I~lSfV~s--------a~dV~~l~~~L~~~g~~i~II--AKIEt~~gv~NL~eIl~~--s 340 (387)
.+..|. +.++...+.|+|+|-+|--.. .+.+..+++.+ +++|+ -.|. .+..+++++. +
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~-----~ipvi~~G~i~----~~~a~~~l~~g~~ 308 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAF-----KGPLIAAGGYD----AESAEAALADGKA 308 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHc-----CCCEEEECCCC----HHHHHHHHHcCCC
Confidence 454553 445666778999999965422 23344444443 34444 4563 6678888876 8
Q ss_pred CeEEEcCCccc
Q 016564 341 DGAMVARGDLG 351 (387)
Q Consensus 341 DGImIaRGDLg 351 (387)
|.|++||+=|+
T Consensus 309 D~V~~gR~~la 319 (338)
T cd02933 309 DLVAFGRPFIA 319 (338)
T ss_pred CEEEeCHhhhh
Confidence 99999998443
No 385
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=21.75 E-value=4e+02 Score=28.46 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=64.3
Q ss_pred CcccHHHHHhhHhcCCCEEEE--cCCCCHHHHHHHHHHHHhcCCCceEEE-ecCChhhhhcHHHHHhhcCeEEEcCCccc
Q 016564 275 TEKDWDDIKFGVDNKVDFYAV--SFVKDAQVVHELKNYLKSCGADIHVIV-KIESADSIPNLHSIITASDGAMVARGDLG 351 (387)
Q Consensus 275 Te~D~~dI~~a~~~gvD~I~l--SfV~sa~dV~~l~~~L~~~g~~i~IIA-KIEt~~gv~NL~eIl~~sDGImIaRGDLg 351 (387)
.+.|+..+...+.+|+|+|++ |.=+|.-.++.++ |+++.-.+..||+ ..=|.+=.+|| |.+-+||+=||=|-=+
T Consensus 249 re~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik-~iK~~yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsGS 325 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIK-YIKETYPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSGS 325 (503)
T ss_pred ccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHH-HHHhhCCCceeeccceeeHHHHHHH--HHccCceeEeccccCc
Confidence 467788888889999999987 4445666666554 7777777777774 34454444443 4444999988655433
Q ss_pred ccCCCCc--H----HHHHHHHHHHHHHCCCCc
Q 016564 352 AELPIEE--V----PLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 352 ~elg~e~--v----~~~Qk~II~~c~aaGKp~ 377 (387)
+-+--+. + ..+--++.+.|+..|.|+
T Consensus 326 iCiTqevma~GrpQ~TAVy~va~~A~q~gvpv 357 (503)
T KOG2550|consen 326 ICITQKVMACGRPQGTAVYKVAEFANQFGVPC 357 (503)
T ss_pred eeeeceeeeccCCcccchhhHHHHHHhcCCce
Confidence 3332221 1 112246788899999997
No 386
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.69 E-value=2.9e+02 Score=23.83 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=42.9
Q ss_pred CCCCCCCcccHHHHHhhHhcCCCEEEEcCCC------------CHHHHHHHHHHHHhcCCC--ceEEEecCChh
Q 016564 269 ATLPSITEKDWDDIKFGVDNKVDFYAVSFVK------------DAQVVHELKNYLKSCGAD--IHVIVKIESAD 328 (387)
Q Consensus 269 l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~------------sa~dV~~l~~~L~~~g~~--i~IIAKIEt~~ 328 (387)
+.+|-...-|...|..+.+.|+|+|++.=+. ..+-+..+++.|.+.|-+ ..-+..+-..+
T Consensus 32 IrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~ 105 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISAPE 105 (124)
T ss_pred EEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCccc
Confidence 5678888899999999999999999995553 345567778888887743 33344444433
No 387
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=21.68 E-value=1.3e+02 Score=26.40 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 304 V~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+++.++.+.+.|-++..+--.+...+ .+.+.+..+|+|+++-||=..=+..-+-.- -...|+..-+.|+++
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~--~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~-l~~~i~~~~~~G~vi 72 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDA--DILEAIREADAIFLGGGDTFRLLRQLKETG-LDEAIREAYRKGGVI 72 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHH--HHHHHHHHSSEEEE--S-HHHHHHHHHHTT-HHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChH--HHHHHHHhCCEEEECCCCHHHHHHHHHhCC-HHHHHHHHHHCCCEE
Confidence 35667777777755444433343222 566666789999999998432221100000 134555555777663
No 388
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=21.54 E-value=2.1e+02 Score=28.21 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=50.3
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCC-CHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCC
Q 016564 109 KTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHG-DHASHQKVIDLVKEYNAQSKDNVIAIMLDTKG 176 (387)
Q Consensus 109 ~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg-~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~G 176 (387)
..-|=-|+|---.+.|.+++++.+|.|=.-||.+-- +| +.|+++++.++...|.+.+|-+-
T Consensus 72 ~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p-------~lI~~~a~~FGsQciVvaIDakr 133 (256)
T COG0107 72 QVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDP-------ELITEAADRFGSQCIVVAIDAKR 133 (256)
T ss_pred hceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcCh-------HHHHHHHHHhCCceEEEEEEeee
Confidence 456677899999999999999999999999998753 33 36778888888888999999753
No 389
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=21.54 E-value=3.6e+02 Score=24.39 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHC-CCCc
Q 016564 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAM-PRMS 377 (387)
Q Consensus 304 V~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aa-GKp~ 377 (387)
.+.+++.|.+.+.++.+.+--+.... +|++++++-.|-|+.+-.+ +.....+...|.++ ++|.
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~ 117 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPV 117 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCE
Confidence 55666778777877776554444333 6788888778877765222 34556677777776 9996
No 390
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=21.44 E-value=2.7e+02 Score=28.74 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=46.8
Q ss_pred cHHHHHhhHhcC-CCEEEEcCCCC-----------------HHHHHHHHHHHHhcC--CCceEEEecCChhhhhcHHHHH
Q 016564 278 DWDDIKFGVDNK-VDFYAVSFVKD-----------------AQVVHELKNYLKSCG--ADIHVIVKIESADSIPNLHSII 337 (387)
Q Consensus 278 D~~dI~~a~~~g-vD~I~lSfV~s-----------------a~dV~~l~~~L~~~g--~~i~IIAKIEt~~gv~NL~eIl 337 (387)
+.+++..+++.+ +|+|.++-..- ..-+.++.+++.+.+ .++.||+ .-|+.+-.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 555777777766 99999998751 223344555565443 3577776 34555555655
Q ss_pred hh----cCeEEEcCCcccc
Q 016564 338 TA----SDGAMVARGDLGA 352 (387)
Q Consensus 338 ~~----sDGImIaRGDLg~ 352 (387)
++ +|++.+||.=|..
T Consensus 302 kalaLGAd~V~ig~~~l~a 320 (392)
T cd02808 302 KALALGADAVGIGTAALIA 320 (392)
T ss_pred HHHHcCCCeeeechHHHHh
Confidence 54 8999999988743
No 391
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=21.32 E-value=1.3e+02 Score=30.65 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=42.9
Q ss_pred CcEecCCcceeeCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHH
Q 016564 253 GGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYL 311 (387)
Q Consensus 253 gG~L~s~KgVn~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L 311 (387)
--.|.+.|.|-+|+-...=|-=..-+.+++....+..+|...+.||+|-.+++...++.
T Consensus 85 AkiLnPeK~VL~Pd~~AgCsmA~~~~~~~~~~~~~~~P~~~vV~YvNtsA~vKA~~Di~ 143 (324)
T COG0379 85 AKILNPEKTVLLPDLEAGCSMADMITAEEVRAFKEKHPDAPVVTYVNTSAEVKAEADIC 143 (324)
T ss_pred HhhcCCCCeEecCCCCCCCCcccCCCHHHHHHHHHHCCCCceEEEeeChHHHHhhcCeE
Confidence 34567888899998765443333345566766677778999999999999998876543
No 392
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=21.14 E-value=3.7e+02 Score=27.34 Aligned_cols=63 Identities=8% Similarity=0.008 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 304 V~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
++.+++.|.+.+..+.|-+--+... -+|+.+++.-.|.|+-+-.+ +..+..+-++|+++++|.
T Consensus 84 a~~a~~~l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~----------~~~r~~~n~~c~~~~ip~ 146 (355)
T PRK05597 84 AESAREAMLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDN----------FDTRHLASWAAARLGIPH 146 (355)
T ss_pred HHHHHHHHHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCE
Confidence 3446677888888877666434333 35778888888888776433 345556788999999996
No 393
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=21.09 E-value=1.5e+02 Score=23.82 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.3
Q ss_pred CcCCEEEEeCCeEEEEEEEEeCCeEEE
Q 016564 222 EVGDMLLVDGGMMSLLVKSKTEDSVKC 248 (387)
Q Consensus 222 ~~Gd~IliDDG~I~l~V~~v~~d~v~c 248 (387)
++|..|.|.|+ |..+|.++.++.|+.
T Consensus 7 k~~Esi~Igdd-I~itVl~i~gnqVki 32 (73)
T COG1551 7 KVGESIMIGDD-IEITVLSIKGNQVKI 32 (73)
T ss_pred ecCceEEecCC-eEEEEEEEcCCeEEE
Confidence 67899999884 899999999998865
No 394
>TIGR03356 BGL beta-galactosidase.
Probab=21.07 E-value=1e+02 Score=32.14 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCceeEeecCC
Q 016564 123 REMIWKLAEAGMNVARLNMSH 143 (387)
Q Consensus 123 ~e~i~~Li~aGm~v~RiN~SH 143 (387)
.|-|+-|.+.|+|.+|+..++
T Consensus 57 ~eDi~l~~~~G~~~~R~si~W 77 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAW 77 (427)
T ss_pred HHHHHHHHHcCCCeEEcccch
Confidence 488999999999999999976
No 395
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=20.98 E-value=3e+02 Score=24.93 Aligned_cols=69 Identities=17% Similarity=0.317 Sum_probs=42.6
Q ss_pred CCCeeeecCCCCCeEecCCCEEEEEecCCCCCccEEEeccC-CcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEEC
Q 016564 175 KGPEVRSGDLPQPITLTSGQEFTFTIQRGVGSAECVSVNYD-DFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDG 253 (387)
Q Consensus 175 ~GPkIRtG~l~~~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~-~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~g 253 (387)
+|--|+...+..+.-+++||.|++..+.+ . +.+... .-.++=..||.|.+-+ --++..|.++|...
T Consensus 86 aGqpI~~~~L~~p~~V~rG~~V~i~~~~~---g--~~i~~~G~Al~~G~~Gd~IrVrN--------~~Sgkiv~g~V~~~ 152 (160)
T PRK06005 86 PGRPIPVSALREPSLVTRGSPVKLVFSAG---G--LTITAAGTPLQSGAAGDLIRVRN--------VDSGVIVSGTVLAD 152 (160)
T ss_pred CCCeeCHHHcCCCcEEeCCCEEEEEEecC---C--EEEEEEEEEcccCCCCCEEEEEE--------CCCCCEEEEEEecC
Confidence 56667777777788899999999987632 1 333222 1233445666665542 12456677777776
Q ss_pred cEe
Q 016564 254 GEL 256 (387)
Q Consensus 254 G~L 256 (387)
|.+
T Consensus 153 g~V 155 (160)
T PRK06005 153 GTI 155 (160)
T ss_pred CEE
Confidence 665
No 396
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=20.94 E-value=4e+02 Score=26.95 Aligned_cols=63 Identities=8% Similarity=0.086 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 304 VHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 304 V~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+..+++.|.+.+.++.|-+-.+... -+|++++++-.|.|+.+-.+ +.....|-..|.++|+|.
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~----------~~~r~~in~~~~~~~ip~ 144 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVT-VEELEELVKEVDLIIDATDN----------FDTRLLINDLSQKYNIPW 144 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCE
Confidence 3455667777788777666544432 46888888878888876432 345556778999999996
No 397
>PRK08328 hypothetical protein; Provisional
Probab=20.82 E-value=4.1e+02 Score=25.14 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCccccccc
Q 016564 307 LKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMSSSIKAF 383 (387)
Q Consensus 307 l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~g~id~~ 383 (387)
+++.+.+.+.++.|-+--+.. .-+|++++++-.|.|+-+-.+ +..+..+-+.|+++|+|. |.|.
T Consensus 87 a~~~l~~~np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~----------~~~r~~l~~~~~~~~ip~--i~g~ 150 (231)
T PRK08328 87 AKWKLERFNSDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDN----------FETRYLLDDYAHKKGIPL--VHGA 150 (231)
T ss_pred HHHHHHHhCCCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCC----------HHHHHHHHHHHHHcCCCE--EEEe
Confidence 345666667777776644332 346788888878877765332 234556667899999997 5543
No 398
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=20.77 E-value=3.2e+02 Score=27.35 Aligned_cols=56 Identities=7% Similarity=0.075 Sum_probs=37.1
Q ss_pred HHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHhcCCCceEEE-ecC-ChhhhhcHHHHHhh
Q 016564 279 WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIV-KIE-SADSIPNLHSIITA 339 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIA-KIE-t~~gv~NL~eIl~~ 339 (387)
++-.+.-.+.|+|+|+++-.++.++++.+.+.+. .++++ .++ +.....+++|+.+.
T Consensus 168 I~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~-----~P~~~nv~~~~~~p~~s~~eL~~l 225 (294)
T TIGR02319 168 IRRSREYVAAGADCIFLEAMLDVEEMKRVRDEID-----APLLANMVEGGKTPWLTTKELESI 225 (294)
T ss_pred HHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcC-----CCeeEEEEecCCCCCCCHHHHHHc
Confidence 3344455679999999999999999998887652 23333 333 23344567777654
No 399
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=20.76 E-value=3.6e+02 Score=27.29 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhcCeEEEcCCcccccCCCCcHHHHHHHHHHHHHHCCCCc
Q 016564 306 ELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 306 ~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~sDGImIaRGDLg~elg~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
.+++.+.+.|.++.+.+-.+.. .-+|+++++.-.|.|+.+-. -+..+..+-..|.++|+|.
T Consensus 84 aa~~~l~~inp~v~v~~~~~~~-~~~~~~~~~~~~DlVid~~D----------n~~~r~~ln~~~~~~~iP~ 144 (339)
T PRK07688 84 AAKKRLEEINSDVRVEAIVQDV-TAEELEELVTGVDLIIDATD----------NFETRFIVNDAAQKYGIPW 144 (339)
T ss_pred HHHHHHHHHCCCcEEEEEeccC-CHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHHHHHhCCCE
Confidence 3455667777777766654443 24678888877888777632 2456778889999999996
No 400
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=20.70 E-value=2.8e+02 Score=24.97 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred ccHHHHHhhHhcCCCEEEEcCC--------CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh-cCeEEEcC
Q 016564 277 KDWDDIKFGVDNKVDFYAVSFV--------KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA-SDGAMVAR 347 (387)
Q Consensus 277 ~D~~dI~~a~~~gvD~I~lSfV--------~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~-sDGImIaR 347 (387)
++.+.+..+.+.|+||+++|-| ..+-.+..++++.......+..+-=| ..+|+.++.+. +||+-+-+
T Consensus 103 h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI----~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 103 HSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI----TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp SSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS------TTTHHHHHHTT-SEEEESH
T ss_pred CcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC----CHHHHHHHHHcCCCEEEEEe
Q ss_pred C
Q 016564 348 G 348 (387)
Q Consensus 348 G 348 (387)
+
T Consensus 179 a 179 (180)
T PF02581_consen 179 A 179 (180)
T ss_dssp H
T ss_pred e
No 401
>PLN02334 ribulose-phosphate 3-epimerase
Probab=20.62 E-value=3.8e+02 Score=25.13 Aligned_cols=76 Identities=12% Similarity=0.170 Sum_probs=43.1
Q ss_pred CCCCCCcccHHHHHhhHhcCCCEEEEcCCC-CHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhh--cCeEEEc
Q 016564 270 TLPSITEKDWDDIKFGVDNKVDFYAVSFVK-DAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITA--SDGAMVA 346 (387)
Q Consensus 270 ~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~-sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~--sDGImIa 346 (387)
+.+.+...=...+..+.+.|+|+|.+..-+ ..+......+.+...|..+.+...=.| -++.+.+++.. +|.|+++
T Consensus 69 ~vhlmv~~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~ 146 (229)
T PLN02334 69 DCHLMVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVM 146 (229)
T ss_pred EEEeccCCHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHhccCCCEEEEE
Confidence 444455322234566788999999777763 223333333344444544444443234 34557778888 8988775
Q ss_pred C
Q 016564 347 R 347 (387)
Q Consensus 347 R 347 (387)
.
T Consensus 147 ~ 147 (229)
T PLN02334 147 S 147 (229)
T ss_pred E
Confidence 4
No 402
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.58 E-value=2.4e+02 Score=24.72 Aligned_cols=53 Identities=9% Similarity=0.171 Sum_probs=33.7
Q ss_pred CceEEEecCCCC------CCHHHHHHHHHhCCceeEeecCCCCHHH--HHHHHHHHHHHHH
Q 016564 109 KTKIVCTIGPST------NTREMIWKLAEAGMNVARLNMSHGDHAS--HQKVIDLVKEYNA 161 (387)
Q Consensus 109 ~TKII~TIGPss------~~~e~i~~Li~aGm~v~RiN~SHg~~e~--~~~~I~~iR~~~~ 161 (387)
+..+++.+|..+ ...+..+...++|++.+=+-..++.... ..++.+.+++..+
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~ 108 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVE 108 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHH
Confidence 567788777654 3468889999999999887544432221 3445555555444
No 403
>KOG1261 consensus Malate synthase [Energy production and conversion]
Probab=20.51 E-value=2.4e+02 Score=29.74 Aligned_cols=209 Identities=19% Similarity=0.225 Sum_probs=118.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCceeEeecCCCCHHHHHHHHH-HHHHHHHhcCCCeeEEEEeCCCCeeeecC
Q 016564 105 TVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVID-LVKEYNAQSKDNVIAIMLDTKGPEVRSGD 183 (387)
Q Consensus 105 ~~~r~TKII~TIGPss~~~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~-~iR~~~~~~~~~~i~I~lDL~GPkIRtG~ 183 (387)
-..|++.|- ||.- ..++-.-+++|+++|--.|-......|..++. .|.-|-+ ..+. | |..-|--|
T Consensus 96 l~dRrvEIT---GPp~--Rkm~iNalNsganvfMtDFEDs~SPtW~N~i~GqVNlyDA-vrn~---I--~f~~ptt~--- 161 (552)
T KOG1261|consen 96 LIDRRVEIT---GPPL--RKMLINALNSGANVFMTDFEDSNSPTWENMIYGQVNLYDA-VRNQ---I--DFTTPTTR--- 161 (552)
T ss_pred hhhcccccc---Ccch--HHHHHHHhcccceeeeccccccCCccHhhhhhhhccHHHH-hccC---c--cccCCCcc---
Confidence 345677764 7763 56888999999999999999988888888876 2322211 1111 1 33333211
Q ss_pred CCCCeEecCCCEEEEEecCCCCCccEEEeccCCcccccCcCCEEEEeCCeEEEEEEEEeCCeEEEEEEECcEecCCccee
Q 016564 184 LPQPITLTSGQEFTFTIQRGVGSAECVSVNYDDFVNDVEVGDMLLVDGGMMSLLVKSKTEDSVKCEVVDGGELKSRRHLN 263 (387)
Q Consensus 184 l~~~i~Lk~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~v~~d~v~c~V~~gG~L~s~KgVn 263 (387)
...+|+...-+.+.--++.- + +--.|+|||--++-..-+
T Consensus 162 --keYkLn~~~a~L~VRPRGWH-----------l-----~EkH~~Id~eP~sgslfD----------------------- 200 (552)
T KOG1261|consen 162 --KEYKLNGKHAVLIVRPRGWH-----------L-----PEKHLLIDDEPISGSLFD----------------------- 200 (552)
T ss_pred --ceeeecCceeEEEEccCccc-----------C-----chheeeecCCcccceeee-----------------------
Confidence 12223222222221111110 0 112445554322211110
Q ss_pred eCCCCCCCCCCCcccHHHHHhhHhcCCCEEEEcCCCCHHHHHHHHHHHHh----cC---CCceEEEecCChhhhhcHHHH
Q 016564 264 VRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS----CG---ADIHVIVKIESADSIPNLHSI 336 (387)
Q Consensus 264 ~p~~~l~lp~LTe~D~~dI~~a~~~gvD~I~lSfV~sa~dV~~l~~~L~~----~g---~~i~IIAKIEt~~gv~NL~eI 336 (387)
+.+ .+--.-++.|+.+ .| -|+-+|+.++.++.+--.+...- .| +.|+--..|||.-|.-.++||
T Consensus 201 -----FGL-yffHNAK~li~~G--sG-PyFYLPKmeh~~EaklWndvF~~aed~~Gi~RGtIraTVLIEtLpA~FQm~EI 271 (552)
T KOG1261|consen 201 -----FGL-YFFHNAKELIKQG--SG-PYFYLPKMEHHEEAKLWNDVFCVAEDKIGIPRGTIRATVLIETLPAAFQMEEI 271 (552)
T ss_pred -----eee-eEEecHHHHHhcC--CC-CeeecccccchHHHHHHHHHHHHHHHhcCCCcCceEEEEeHhhchHHHhHHHH
Confidence 111 0111123333332 23 46778999988887765554421 12 467888899999999999999
Q ss_pred Hhh----cCeEEEcCCcccccC--------------------CCCcHHHHHHHHHHHHHHCCCCc
Q 016564 337 ITA----SDGAMVARGDLGAEL--------------------PIEEVPLLQVVFISDIRAMPRMS 377 (387)
Q Consensus 337 l~~----sDGImIaRGDLg~el--------------------g~e~v~~~Qk~II~~c~aaGKp~ 377 (387)
+-. +-|+=.||=|.-.++ +-.=+...-+++|..|...|+.+
T Consensus 272 iy~lrdhsvGLNCGRWDyifS~iKt~qnh~~~lLPdR~qv~Mt~pFMr~Ys~~lI~tCH~RGvHA 336 (552)
T KOG1261|consen 272 IYQLRDHSVGLNCGRWDYIFSYIKTFQNHPDHLLPDRVQVGMTSPFMRAYSKRLINTCHRRGVHA 336 (552)
T ss_pred HHHHHhhcccccccchHHHHHHHHHHhhCccccCCccceeccCcHHHHHHHHHHHHHHHhhcchh
Confidence 865 568888888865541 11124455689999999999875
No 404
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.45 E-value=3.4e+02 Score=25.67 Aligned_cols=92 Identities=9% Similarity=0.013 Sum_probs=60.3
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHHhhc-C--eEEEcCCc--------ccccCCCC--
Q 016564 291 DFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITAS-D--GAMVARGD--------LGAELPIE-- 357 (387)
Q Consensus 291 D~I~lSfV~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl~~s-D--GImIaRGD--------Lg~elg~e-- 357 (387)
-.|.+=...++++...+.+.|-+.|-.. +=.-.-|+.+++.+.++.+.. | .++||-|= .+.+.|.+
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~-iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKA-IEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCE-EEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 3455556668888888888777655332 113345888999899888764 2 48887652 22222222
Q ss_pred cHHHHHHHHHHHHHHCCCCcccccccee
Q 016564 358 EVPLLQVVFISDIRAMPRMSSSIKAFYL 385 (387)
Q Consensus 358 ~v~~~Qk~II~~c~aaGKp~g~id~~~~ 385 (387)
=-|..-..+++.|+++|.|. +-|+++
T Consensus 93 vsP~~~~~v~~~~~~~~i~~--iPG~~T 118 (213)
T PRK06552 93 VSPSFNRETAKICNLYQIPY--LPGCMT 118 (213)
T ss_pred ECCCCCHHHHHHHHHcCCCE--ECCcCC
Confidence 11445589999999999998 777654
No 405
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.40 E-value=4.6e+02 Score=26.47 Aligned_cols=12 Identities=50% Similarity=0.764 Sum_probs=5.6
Q ss_pred HHHHHHHHhCCc
Q 016564 124 EMIWKLAEAGMN 135 (387)
Q Consensus 124 e~i~~Li~aGm~ 135 (387)
+.+++|+++|.+
T Consensus 196 ~~i~~L~~~~l~ 207 (343)
T PRK14469 196 EKIIQLAEEGLD 207 (343)
T ss_pred HHHHHHHhhCCC
Confidence 444444444444
No 406
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=20.37 E-value=5.5e+02 Score=24.68 Aligned_cols=74 Identities=11% Similarity=0.232 Sum_probs=52.1
Q ss_pred CCceEEEecC-----CCCCC-HHHHHHHHHhCCceeEeecCCCCHHHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCeeee
Q 016564 108 RKTKIVCTIG-----PSTNT-REMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRS 181 (387)
Q Consensus 108 r~TKII~TIG-----Pss~~-~e~i~~Li~aGm~v~RiN~SHg~~e~~~~~I~~iR~~~~~~~~~~i~I~lDL~GPkIRt 181 (387)
..+|+|++-= |+..+ .+.+++|.+.|.|++.|-+.--+.++..++++..+++.+......+++.|-=.|.--|+
T Consensus 124 ~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi 203 (238)
T PRK13575 124 YNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRT 203 (238)
T ss_pred cCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhc
Confidence 4689998862 21111 25788888999999999988778888888888777665543334577777666766665
No 407
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.16 E-value=7.6e+02 Score=23.49 Aligned_cols=99 Identities=12% Similarity=0.030 Sum_probs=58.2
Q ss_pred HHHHhhHhcCCCEEEEcCCC----------CHHHHHHHHHHHHhcCCCceEEE-------ecCC------hhhhhcHHHH
Q 016564 280 DDIKFGVDNKVDFYAVSFVK----------DAQVVHELKNYLKSCGADIHVIV-------KIES------ADSIPNLHSI 336 (387)
Q Consensus 280 ~dI~~a~~~gvD~I~lSfV~----------sa~dV~~l~~~L~~~g~~i~IIA-------KIEt------~~gv~NL~eI 336 (387)
+.++.+.+.|.|+|=++.-. +.+++.++++.+++.|-.+.-++ -+-+ .++++.+...
T Consensus 20 e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~ 99 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKA 99 (279)
T ss_pred HHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHH
Confidence 35677889999999775322 47788899999988776543222 0111 1344455555
Q ss_pred Hhh-----cCeEEEcCCcccccCC----CCcHHHHHHHHHHHHHHCCCCcc
Q 016564 337 ITA-----SDGAMVARGDLGAELP----IEEVPLLQVVFISDIRAMPRMSS 378 (387)
Q Consensus 337 l~~-----sDGImIaRGDLg~elg----~e~v~~~Qk~II~~c~aaGKp~g 378 (387)
++. ++.|.+.-++....-. .+.+....+++...|.++|..++
T Consensus 100 i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~ 150 (279)
T TIGR00542 100 IQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLA 150 (279)
T ss_pred HHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 543 4566665433221111 12234445788888888888764
No 408
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.11 E-value=5.2e+02 Score=26.16 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=34.3
Q ss_pred HHHHHhhHhcCCCEEEEcCC-CCHHHHHHHHHHHHhcCCCceEEEecCChhhhhcHHHHH
Q 016564 279 WDDIKFGVDNKVDFYAVSFV-KDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSII 337 (387)
Q Consensus 279 ~~dI~~a~~~gvD~I~lSfV-~sa~dV~~l~~~L~~~g~~i~IIAKIEt~~gv~NL~eIl 337 (387)
.++++.+.++|+|.|-+.+- ...+.+.+..++.++.|..+.+...--+....+.+-+++
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a 149 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQA 149 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHH
Confidence 56789999999999887653 334445555556666666544333333333333333333
Done!