Query 016565
Match_columns 387
No_of_seqs 143 out of 190
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:59:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4308 LRR-containing protein 99.5 9.5E-15 2.1E-19 152.3 1.1 165 199-377 89-257 (478)
2 cd00116 LRR_RI Leucine-rich re 99.5 1E-12 2.2E-17 125.7 14.0 165 198-378 138-303 (319)
3 cd00116 LRR_RI Leucine-rich re 99.4 4.4E-12 9.6E-17 121.3 13.5 138 225-377 108-245 (319)
4 KOG4308 LRR-containing protein 99.4 1.1E-13 2.4E-18 144.4 1.3 169 194-377 141-314 (478)
5 KOG1909 Ran GTPase-activating 99.0 8.1E-10 1.7E-14 110.6 7.2 169 198-379 93-267 (382)
6 KOG1909 Ran GTPase-activating 98.9 2.2E-09 4.9E-14 107.5 8.1 149 212-377 80-237 (382)
7 smart00368 LRR_RI Leucine rich 98.2 1.8E-06 3.9E-11 56.5 3.3 28 288-315 1-28 (28)
8 COG5238 RNA1 Ran GTPase-activa 98.1 1.4E-05 3E-10 78.9 9.8 37 214-251 20-56 (388)
9 smart00368 LRR_RI Leucine rich 98.0 4.8E-06 1E-10 54.5 3.0 26 353-378 2-27 (28)
10 COG5238 RNA1 Ran GTPase-activa 97.9 2.4E-05 5.2E-10 77.3 7.6 170 196-377 90-266 (388)
11 PF14580 LRR_9: Leucine-rich r 97.7 3E-05 6.6E-10 71.4 4.6 125 223-381 17-142 (175)
12 KOG1259 Nischarin, modulator o 97.5 2.2E-05 4.8E-10 78.5 0.7 103 225-367 284-388 (490)
13 PLN00113 leucine-rich repeat r 97.4 0.0002 4.4E-09 79.8 6.2 15 353-367 284-298 (968)
14 PLN00113 leucine-rich repeat r 97.4 0.00034 7.5E-09 78.0 7.3 86 258-367 165-250 (968)
15 KOG3207 Beta-tubulin folding c 97.3 0.00054 1.2E-08 71.2 6.6 237 86-367 49-315 (505)
16 PF13855 LRR_8: Leucine rich r 97.0 0.00024 5.3E-09 53.2 0.7 61 289-365 1-61 (61)
17 PF13516 LRR_6: Leucine Rich r 96.9 0.00054 1.2E-08 42.7 1.6 24 288-311 1-24 (24)
18 PF13516 LRR_6: Leucine Rich r 96.9 0.00044 9.6E-09 43.1 1.1 23 353-375 2-24 (24)
19 KOG4194 Membrane glycoprotein 96.7 0.0016 3.4E-08 70.1 4.0 101 200-331 81-186 (873)
20 KOG2120 SCF ubiquitin ligase, 96.6 0.0029 6.3E-08 63.6 5.4 129 223-377 258-386 (419)
21 PF14580 LRR_9: Leucine-rich r 96.6 0.0017 3.7E-08 59.9 3.1 82 258-368 20-103 (175)
22 KOG4194 Membrane glycoprotein 96.5 0.0018 3.8E-08 69.8 3.3 110 227-369 80-189 (873)
23 KOG2120 SCF ubiquitin ligase, 96.4 0.0014 3.1E-08 65.7 1.7 88 225-331 185-273 (419)
24 KOG0618 Serine/threonine phosp 96.3 0.0021 4.6E-08 71.9 2.6 96 223-331 308-420 (1081)
25 KOG1859 Leucine-rich repeat pr 96.0 0.002 4.3E-08 70.8 0.4 150 175-367 110-268 (1096)
26 PF12799 LRR_4: Leucine Rich r 95.7 0.014 3E-07 41.9 3.8 37 319-367 2-38 (44)
27 PRK15387 E3 ubiquitin-protein 95.7 0.019 4.1E-07 64.2 6.3 21 353-373 445-465 (788)
28 PLN03150 hypothetical protein; 95.7 0.015 3.2E-07 63.1 5.4 66 285-366 438-503 (623)
29 KOG1859 Leucine-rich repeat pr 95.6 0.0051 1.1E-07 67.7 1.6 126 225-373 109-253 (1096)
30 PRK15387 E3 ubiquitin-protein 95.6 0.024 5.2E-07 63.3 6.8 34 289-331 302-335 (788)
31 KOG1947 Leucine rich repeat pr 95.4 0.027 5.8E-07 56.7 5.7 133 223-376 241-385 (482)
32 PRK15370 E3 ubiquitin-protein 95.3 0.033 7.1E-07 62.0 6.5 98 226-367 221-318 (754)
33 KOG3207 Beta-tubulin folding c 95.3 0.0097 2.1E-07 62.1 2.1 156 175-369 104-262 (505)
34 KOG1259 Nischarin, modulator o 95.2 0.0068 1.5E-07 61.1 0.8 35 289-331 284-320 (490)
35 PLN03150 hypothetical protein; 95.1 0.031 6.8E-07 60.7 5.5 108 226-364 419-526 (623)
36 KOG0617 Ras suppressor protein 95.0 0.0036 7.9E-08 58.8 -1.8 117 223-366 31-163 (264)
37 PF13855 LRR_8: Leucine rich r 94.9 0.0034 7.3E-08 47.0 -1.9 60 258-330 2-61 (61)
38 KOG2982 Uncharacterized conser 94.6 0.04 8.7E-07 55.6 4.4 73 213-301 86-158 (418)
39 KOG1947 Leucine rich repeat pr 94.6 0.11 2.4E-06 52.3 7.7 38 288-329 242-280 (482)
40 KOG0618 Serine/threonine phosp 94.5 0.017 3.6E-07 65.0 1.5 77 209-304 249-325 (1081)
41 PRK15370 E3 ubiquitin-protein 94.4 0.061 1.3E-06 60.0 5.8 21 353-373 415-435 (754)
42 PF12799 LRR_4: Leucine Rich r 94.1 0.042 9.1E-07 39.4 2.5 13 319-331 25-37 (44)
43 KOG0444 Cytoskeletal regulator 93.9 0.014 3E-07 63.7 -0.4 14 225-238 55-68 (1255)
44 KOG3665 ZYG-1-like serine/thre 93.1 0.21 4.6E-06 55.3 6.9 39 4-43 2-40 (699)
45 KOG0444 Cytoskeletal regulator 92.8 0.015 3.2E-07 63.4 -2.4 77 285-370 218-308 (1255)
46 KOG3926 F-box proteins [Amino 92.3 0.067 1.5E-06 52.9 1.5 91 6-114 177-277 (332)
47 KOG2739 Leucine-rich acidic nu 92.1 0.049 1.1E-06 53.4 0.4 40 288-331 64-104 (260)
48 KOG0472 Leucine-rich repeat pr 91.9 0.13 2.9E-06 53.7 3.2 116 223-373 433-548 (565)
49 PLN03210 Resistant to P. syrin 91.8 0.3 6.5E-06 56.7 6.4 12 319-330 779-790 (1153)
50 KOG3735 Tropomodulin and leiom 91.6 0.28 6.1E-06 49.8 5.1 122 218-350 191-313 (353)
51 COG4886 Leucine-rich repeat (L 91.5 0.11 2.3E-06 52.2 2.0 120 226-369 141-271 (394)
52 KOG4579 Leucine-rich repeat (L 91.1 0.11 2.3E-06 47.5 1.5 71 280-367 44-114 (177)
53 KOG2982 Uncharacterized conser 90.8 0.26 5.7E-06 49.9 4.0 89 226-331 46-134 (418)
54 PF06881 Elongin_A: RNA polyme 90.6 0.48 1E-05 40.2 4.9 65 29-114 4-72 (109)
55 PLN03210 Resistant to P. syrin 90.3 0.33 7.2E-06 56.4 4.8 36 288-331 824-859 (1153)
56 KOG0472 Leucine-rich repeat pr 89.8 0.24 5.3E-06 51.9 2.8 82 258-366 229-310 (565)
57 COG4886 Leucine-rich repeat (L 89.0 0.17 3.7E-06 50.7 1.1 42 284-331 158-199 (394)
58 KOG1644 U2-associated snRNP A' 88.7 0.29 6.4E-06 47.0 2.4 34 291-331 44-77 (233)
59 KOG0531 Protein phosphatase 1, 87.7 0.24 5.2E-06 50.8 1.2 18 285-302 114-131 (414)
60 KOG0531 Protein phosphatase 1, 83.2 0.63 1.4E-05 47.7 1.8 83 223-331 116-199 (414)
61 KOG4242 Predicted myosin-I-bin 82.8 0.55 1.2E-05 49.9 1.1 82 289-380 354-467 (553)
62 KOG4341 F-box protein containi 82.5 2 4.3E-05 45.3 5.0 137 215-375 310-449 (483)
63 KOG4237 Extracellular matrix p 81.7 0.96 2.1E-05 47.4 2.4 63 223-301 272-334 (498)
64 KOG0532 Leucine-rich repeat (L 81.6 0.5 1.1E-05 51.3 0.3 121 223-376 119-257 (722)
65 smart00367 LRR_CC Leucine-rich 80.5 1.7 3.7E-05 27.4 2.4 22 289-310 2-24 (26)
66 KOG3665 ZYG-1-like serine/thre 80.4 2.5 5.4E-05 47.1 5.2 126 223-375 146-272 (699)
67 smart00367 LRR_CC Leucine-rich 80.3 1.7 3.6E-05 27.4 2.3 23 353-375 2-25 (26)
68 PF13504 LRR_7: Leucine rich r 79.4 1.1 2.5E-05 25.9 1.2 12 290-301 2-13 (17)
69 KOG0617 Ras suppressor protein 79.0 0.38 8.2E-06 45.6 -1.4 42 285-332 29-70 (264)
70 KOG0532 Leucine-rich repeat (L 77.2 0.14 3.1E-06 55.4 -5.4 103 250-368 91-204 (722)
71 KOG2739 Leucine-rich acidic nu 76.1 1.1 2.4E-05 44.1 0.8 63 258-332 66-130 (260)
72 KOG4579 Leucine-rich repeat (L 72.6 1.9 4.2E-05 39.6 1.4 113 219-368 48-161 (177)
73 KOG4242 Predicted myosin-I-bin 71.3 2.1 4.5E-05 45.7 1.5 53 278-331 429-481 (553)
74 cd03717 SOCS_SOCS_like SOCS (s 70.1 10 0.00022 26.6 4.3 36 3-41 2-37 (39)
75 KOG3735 Tropomodulin and leiom 69.2 6.3 0.00014 40.4 4.3 82 289-378 198-280 (353)
76 KOG4237 Extracellular matrix p 66.5 2.9 6.2E-05 44.0 1.3 85 258-366 275-359 (498)
77 cd03742 SOCS_Rab40 SOCS (suppr 65.9 10 0.00022 27.6 3.6 36 2-40 1-36 (43)
78 cd03737 SOCS_SOCS3 SOCS (suppr 57.8 17 0.00036 26.3 3.6 34 3-40 2-35 (42)
79 cd03735 SOCS_SOCS1 SOCS (suppr 56.5 25 0.00054 25.6 4.3 37 2-41 1-37 (43)
80 PF00560 LRR_1: Leucine Rich R 56.3 5.8 0.00013 24.1 0.9 12 320-331 2-13 (22)
81 KOG3864 Uncharacterized conser 55.6 6.1 0.00013 38.1 1.3 12 369-380 194-205 (221)
82 KOG3763 mRNA export factor TAP 55.2 12 0.00027 40.6 3.6 116 250-380 211-347 (585)
83 KOG3864 Uncharacterized conser 52.0 8.3 0.00018 37.1 1.6 69 247-327 116-185 (221)
84 smart00369 LRR_TYP Leucine-ric 49.2 15 0.00032 22.8 1.9 15 353-367 2-16 (26)
85 smart00370 LRR Leucine-rich re 49.2 15 0.00032 22.8 1.9 15 353-367 2-16 (26)
86 PF07525 SOCS_box: SOCS box; 48.5 19 0.00042 25.1 2.6 35 4-40 1-37 (40)
87 PRK15386 type III secretion pr 48.3 40 0.00087 35.7 6.0 75 223-331 50-125 (426)
88 cd03587 SOCS SOCS (suppressors 45.9 43 0.00094 23.5 4.1 37 4-41 2-39 (41)
89 smart00365 LRR_SD22 Leucine-ri 43.9 18 0.00039 23.4 1.7 14 353-366 2-15 (26)
90 cd03736 SOCS_SOCS2 SOCS (suppr 42.2 53 0.0012 23.4 4.1 34 3-41 2-35 (41)
91 KOG2123 Uncharacterized conser 41.6 18 0.0004 36.8 2.2 62 288-359 62-123 (388)
92 cd03716 SOCS_ASB_like SOCS (su 40.5 60 0.0013 22.9 4.2 38 3-41 2-40 (42)
93 smart00253 SOCS suppressors of 39.5 63 0.0014 23.0 4.2 36 3-41 6-41 (43)
94 cd03740 SOCS_SOCS6 SOCS (suppr 38.5 55 0.0012 23.4 3.7 37 3-42 2-38 (41)
95 cd03734 SOCS_CIS1 SOCS (suppre 37.7 71 0.0015 22.9 4.2 34 3-41 2-35 (41)
96 cd03718 SOCS_SSB1_4 SOCS (supp 36.3 72 0.0016 22.7 4.1 37 3-40 2-39 (42)
97 PF08260 Kinin: Insect kinin p 33.2 18 0.0004 17.5 0.4 7 379-385 2-8 (8)
98 cd03746 SOCS_WSB1_SWIP1 SOCS ( 31.7 89 0.0019 22.2 3.9 36 4-42 3-38 (40)
99 PF12937 F-box-like: F-box-lik 31.4 37 0.0008 23.8 1.9 22 29-50 1-22 (47)
100 KOG2123 Uncharacterized conser 31.1 21 0.00045 36.4 0.8 86 256-370 18-105 (388)
101 KOG1879 UDP-glucose:glycoprote 30.1 32 0.00069 40.9 2.1 25 94-118 1308-1335(1470)
102 cd03722 SOCS_ASB3 SOCS (suppre 29.9 98 0.0021 23.2 4.0 41 2-42 1-44 (51)
103 cd03733 SOCS_WSB_SWIP SOCS (su 28.6 1E+02 0.0023 21.7 3.8 34 4-40 3-36 (39)
104 KOG1644 U2-associated snRNP A' 27.3 40 0.00086 32.8 1.9 107 226-362 43-149 (233)
105 smart00364 LRR_BAC Leucine-ric 26.0 41 0.00089 22.0 1.2 15 353-367 2-16 (26)
106 KOG4658 Apoptotic ATPase [Sign 25.9 59 0.0013 37.5 3.3 65 217-300 563-629 (889)
107 PF00646 F-box: F-box domain; 23.2 44 0.00096 23.1 1.1 23 29-51 3-25 (48)
108 cd03745 SOCS_WSB2_SWIP2 SOCS ( 23.1 1.4E+02 0.003 21.2 3.6 34 4-40 3-36 (39)
109 KOG3244 Protein involved in ub 22.4 65 0.0014 31.7 2.3 23 105-127 232-254 (267)
110 cd03726 SOCS_ASB7 SOCS (suppre 20.8 1.8E+02 0.0038 21.2 3.8 37 4-41 3-40 (45)
111 KOG4658 Apoptotic ATPase [Sign 20.8 62 0.0014 37.3 2.2 42 285-331 567-608 (889)
112 cd03743 SOCS_SSB4 SOCS (suppre 20.7 1.6E+02 0.0034 21.2 3.5 37 3-40 2-39 (42)
113 KOG3763 mRNA export factor TAP 20.2 1.1E+02 0.0024 33.6 3.7 86 219-313 238-344 (585)
No 1
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.46 E-value=9.5e-15 Score=152.29 Aligned_cols=165 Identities=21% Similarity=0.136 Sum_probs=146.7
Q ss_pred ccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcch
Q 016565 199 LQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (387)
Q Consensus 199 Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~ 277 (387)
+..+.+..+ +.+.+++.++.++.++ .+|+.|+|++|++++.|+..+|++|++|.| .++.|.+..|.++...+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~-~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~---~l~~L~l~~c~l~~~g~~-- 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL-PTLGQLDLSGNNLGDEGARLLCEGLRLPQC---LLQTLELVSCSLTSEGAA-- 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc-ccHhHhhcccCCCccHhHHHHHhhcccchH---HHHHHHhhcccccccchH--
Confidence 344444433 6677999999999966 799999999999999999999999999999 999999999998665554
Q ss_pred hHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhcc---CCCccceEeccCcccCCcccccCCcchhhhhccCCCCCC
Q 016565 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE---ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (387)
Q Consensus 278 ~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~---psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qs 354 (387)
.++.+|..+++|++||++.|.+.+.|...++.+|.+ |.|.+++|.|..|.+|. .+|..++.+|...++ .
T Consensus 163 --~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~----~~c~~l~~~l~~~~~--~ 234 (478)
T KOG4308|consen 163 --PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS----SSCALLDEVLASGES--L 234 (478)
T ss_pred --HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh----HHHHHHHHHHhccch--h
Confidence 789999999999999999999999999999999998 99999999999999993 678889999998753 3
Q ss_pred CCeeeCCCCCCCChHHHHHHhhh
Q 016565 355 LRLLNLRYDMIGNAVSLLLCKLF 377 (387)
Q Consensus 355 Lt~L~L~~N~LgD~GVk~LCeaL 377 (387)
+..|++..|.++|.|++.|+..|
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l 257 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCL 257 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHh
Confidence 88899999999999999999877
No 2
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=1e-12 Score=125.70 Aligned_cols=165 Identities=24% Similarity=0.230 Sum_probs=136.0
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~ 276 (387)
.++.|.+... ++......+...+. ..++|++|+|++|.+.+.++..+.+++..- . +|+.|.|..|.+.. .
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~---~L~~L~L~~n~i~~----~ 208 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKAN-C---NLEVLDLNNNGLTD----E 208 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhC-C---CCCEEeccCCccCh----H
Confidence 5777776633 56556666666776 447899999999999999999999888754 4 89999999998732 2
Q ss_pred hhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCC
Q 016565 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (387)
Q Consensus 277 ~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt 356 (387)
....++..+..+++|++||+++|.++|.|+..++.++..+...|++|++++|.++. .+...++.++..+ ++|+
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~----~~~~~l~~~~~~~---~~L~ 281 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD----DGAKDLAEVLAEK---ESLL 281 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc----HHHHHHHHHHhcC---CCcc
Confidence 33467888889999999999999999999999999998878899999999999983 2235577777766 4799
Q ss_pred eeeCCCCCCCChHHHHHHhhhc
Q 016565 357 LLNLRYDMIGNAVSLLLCKLFF 378 (387)
Q Consensus 357 ~L~L~~N~LgD~GVk~LCeaL~ 378 (387)
+|+++.|.++++|++.+++++.
T Consensus 282 ~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 282 ELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred EEECCCCCCcHHHHHHHHHHHh
Confidence 9999999999999999998875
No 3
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.39 E-value=4.4e-12 Score=121.26 Aligned_cols=138 Identities=20% Similarity=0.202 Sum_probs=81.8
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
++|++|++++|.+++.++..+++++..... +|+.|.|..|.+.. .....++..+..+++|++|+|++|.+++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~---~L~~L~L~~n~l~~----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPP---ALEKLVLGRNRLEG----ASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCC---CceEEEcCCCcCCc----hHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 567777777777776677766666655422 56777777766522 22234555666666777777777777777
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHHHhhh
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLLCKLF 377 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~LCeaL 377 (387)
|+..++.++..- ..|+.|+|++|.+++ .+...++..+..+ ++|++|++++|.+.|.|+..+++++
T Consensus 181 ~~~~l~~~l~~~-~~L~~L~L~~n~i~~----~~~~~l~~~~~~~---~~L~~L~ls~n~l~~~~~~~l~~~~ 245 (319)
T cd00116 181 GIRALAEGLKAN-CNLEVLDLNNNGLTD----EGASALAETLASL---KSLEVLNLGDNNLTDAGAAALASAL 245 (319)
T ss_pred HHHHHHHHHHhC-CCCCEEeccCCccCh----HHHHHHHHHhccc---CCCCEEecCCCcCchHHHHHHHHHH
Confidence 776666666543 467777777776663 1112233333333 3466666666666666665555554
No 4
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.37 E-value=1.1e-13 Score=144.38 Aligned_cols=169 Identities=24% Similarity=0.177 Sum_probs=151.9
Q ss_pred cccccccccccc-ccccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcC---CCcccccccceeeccccc
Q 016565 194 LRESKLQSLVLR-WIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS---KRKRIHKIENLSIDISSF 269 (387)
Q Consensus 194 ~~~C~Lq~L~l~-~~ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~---p~C~~~~Lq~L~L~~c~l 269 (387)
.+.|.+++|.+. +.++..++..+..+|.. +.+|++|+++-|.+.+.|+..++.+|++ |.| +++.|+|++|.+
T Consensus 141 ~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~---~le~L~L~~~~~ 216 (478)
T KOG4308|consen 141 LPQCLLQTLELVSCSLTSEGAAPLAAVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLS---SLETLKLSRCGV 216 (478)
T ss_pred cchHHHHHHHhhcccccccchHHHHHHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccc---cHHHHhhhhcCc
Confidence 335778887544 66899999999999997 6899999999999999999999999998 888 999999999999
Q ss_pred ccCCCcchhHHHHHHHhcCCC-CceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhcc
Q 016565 270 IENCPSSVVVELVSFLSSGRS-LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 348 (387)
Q Consensus 270 ~~~~~~~~~~~L~s~L~~n~s-L~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~ 348 (387)
+..+|. .+..+|.+.++ +.+||++.|.++|.|++.|+..|..+++++++|++..|.|++ .++..++.++..
T Consensus 217 t~~~c~----~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~----~~~~~L~~~l~~ 288 (478)
T KOG4308|consen 217 TSSSCA----LLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE----KGVRDLAEVLVS 288 (478)
T ss_pred ChHHHH----HHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc----cchHHHHHHHhh
Confidence 765555 78899999998 999999999999999999999999999999999999999994 556788887776
Q ss_pred CCCCCCCCeeeCCCCCCCChHHHHHHhhh
Q 016565 349 GKSLQSLRLLNLRYDMIGNAVSLLLCKLF 377 (387)
Q Consensus 349 n~s~qsLt~L~L~~N~LgD~GVk~LCeaL 377 (387)
- +.++.|.|.+|.+.|.||..+.+++
T Consensus 289 ~---~~l~~l~l~~n~l~~~~~~~~~~~l 314 (478)
T KOG4308|consen 289 C---RQLEELSLSNNPLTDYGVELLLEAL 314 (478)
T ss_pred h---HHHHHhhcccCccccHHHHHHHHHh
Confidence 6 4699999999999999999999987
No 5
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=8.1e-10 Score=110.60 Aligned_cols=169 Identities=21% Similarity=0.164 Sum_probs=104.8
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCc-----ccccccceeeccccccc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK-----RIHKIENLSIDISSFIE 271 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C-----~~~~Lq~L~L~~c~l~~ 271 (387)
+||++.|++. +...+.+.+-..|. ...+|+||.|.+|-+|..|=.+|-.+|.+-.. ...+|+.+..+++.+ +
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~-s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-e 170 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLS-SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-E 170 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHH-hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-c
Confidence 5555555533 44444455444444 33556666666666665555555543322110 234566666666664 5
Q ss_pred CCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCC
Q 016565 272 NCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS 351 (387)
Q Consensus 272 ~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s 351 (387)
+.-+ ..++.++.++++|+++.++.|.++-.|+-+|.+++.|-. +|+.|||.+|-+|--++ .++|.+|.+.
T Consensus 171 n~ga---~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs----~~LakaL~s~-- 240 (382)
T KOG1909|consen 171 NGGA---TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGS----VALAKALSSW-- 240 (382)
T ss_pred cccH---HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHH----HHHHHHhccc--
Confidence 3333 356777777777777777777777777777777777665 78888888888871111 4566666665
Q ss_pred CCCCCeeeCCCCCCCChHHHHHHhhhcc
Q 016565 352 LQSLRLLNLRYDMIGNAVSLLLCKLFFP 379 (387)
Q Consensus 352 ~qsLt~L~L~~N~LgD~GVk~LCeaL~~ 379 (387)
+.|+.|+++.-.|.+.|+..+-+|+.-
T Consensus 241 -~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 241 -PHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred -chheeecccccccccccHHHHHHHHhc
Confidence 358888888888888888888877743
No 6
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=2.2e-09 Score=107.46 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=124.1
Q ss_pred hHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHH-------
Q 016565 212 HVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSF------- 284 (387)
Q Consensus 212 ~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~------- 284 (387)
.-..|..+|++. +.|+.|+||+|.+|..|++.+=+-|++ +..||+|.|.+|.+ .. ..-+.|+.+
T Consensus 80 ~L~~l~~aL~~~-~~L~~ldLSDNA~G~~g~~~l~~ll~s----~~~L~eL~L~N~Gl-g~---~ag~~l~~al~~l~~~ 150 (382)
T KOG1909|consen 80 ALKMLSKALLGC-PKLQKLDLSDNAFGPKGIRGLEELLSS----CTDLEELYLNNCGL-GP---EAGGRLGRALFELAVN 150 (382)
T ss_pred HHHHHHHHHhcC-CceeEeeccccccCccchHHHHHHHHh----ccCHHHHhhhcCCC-Ch---hHHHHHHHHHHHHHHH
Confidence 346677899966 599999999999999999999999988 35799999999998 42 222234442
Q ss_pred --HhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCC
Q 016565 285 --LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRY 362 (387)
Q Consensus 285 --L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~ 362 (387)
..+-+.|+.++-+.|.++|.||..+.++++... .|+...+..|.|...+ =..++.+|..+ ++|+.|||+.
T Consensus 151 kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~-~leevr~~qN~I~~eG----~~al~eal~~~---~~LevLdl~D 222 (382)
T KOG1909|consen 151 KKAASKPKLRVFICGRNRLENGGATALAEAFQSHP-TLEEVRLSQNGIRPEG----VTALAEALEHC---PHLEVLDLRD 222 (382)
T ss_pred hccCCCcceEEEEeeccccccccHHHHHHHHHhcc-ccceEEEecccccCch----hHHHHHHHHhC---Ccceeeeccc
Confidence 234468999999999999999999999998774 8999999999999211 16788899988 5799999999
Q ss_pred CCCCChHHHHHHhhh
Q 016565 363 DMIGNAVSLLLCKLF 377 (387)
Q Consensus 363 N~LgD~GVk~LCeaL 377 (387)
|.++-.|...|.++|
T Consensus 223 Ntft~egs~~LakaL 237 (382)
T KOG1909|consen 223 NTFTLEGSVALAKAL 237 (382)
T ss_pred chhhhHHHHHHHHHh
Confidence 999999999999986
No 7
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=98.17 E-value=1.8e-06 Score=56.48 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=26.1
Q ss_pred CCCCceeeCCCCCCCchhHHHHHHHhcc
Q 016565 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLE 315 (387)
Q Consensus 288 n~sL~~LdLs~N~L~D~GvklLC~~Ll~ 315 (387)
|++|++|||++|.++|+|++.||++|.+
T Consensus 1 n~~L~~LdL~~N~i~~~G~~~L~~~L~~ 28 (28)
T smart00368 1 NPSLRELDLSNNKLGDEGARALAEALKD 28 (28)
T ss_pred CCccCEEECCCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999999999864
No 8
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.12 E-value=1.4e-05 Score=78.91 Aligned_cols=37 Identities=11% Similarity=0.296 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcC
Q 016565 214 QALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 251 (387)
Q Consensus 214 ~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~ 251 (387)
++.+..|.. ..++++++||+|.+|...|+.||+.+++
T Consensus 20 k~v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~ 56 (388)
T COG5238 20 KGVVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIAN 56 (388)
T ss_pred hHHHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhh
Confidence 444444443 3577777777777777777777777665
No 9
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=98.01 E-value=4.8e-06 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=24.4
Q ss_pred CCCCeeeCCCCCCCChHHHHHHhhhc
Q 016565 353 QSLRLLNLRYDMIGNAVSLLLCKLFF 378 (387)
Q Consensus 353 qsLt~L~L~~N~LgD~GVk~LCeaL~ 378 (387)
++|++|||+.|.|+|+|++.||++|.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 57999999999999999999999984
No 10
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.94 E-value=2.4e-05 Score=77.29 Aligned_cols=170 Identities=22% Similarity=0.147 Sum_probs=124.4
Q ss_pred cc-ccccccccccccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCc-----ccccccceeeccccc
Q 016565 196 ES-KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK-----RIHKIENLSIDISSF 269 (387)
Q Consensus 196 ~C-~Lq~L~l~~~ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C-----~~~~Lq~L~L~~c~l 269 (387)
.| ++|+..+++.........+---++++...|.||.|++|-+|+-+=.++-.+|.|-.. ..-.|+....+++.+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 44 578888776532222233333444466899999999999998888888877655322 234788888888887
Q ss_pred ccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHH-HHhccCCCccceEeccCcccCCcccccCCcchhhhhcc
Q 016565 270 IENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF-SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 348 (387)
Q Consensus 270 ~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC-~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~ 348 (387)
+.... ...+..|.++..|+++.+-+|.+..+||.+|. .||.- +-+|+.|||.+|-+|- -+-.+||-||-.
T Consensus 170 -engs~---~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~----~gS~~La~al~~ 240 (388)
T COG5238 170 -ENGSK---ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTL----EGSRYLADALCE 240 (388)
T ss_pred -ccCcH---HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhh----hhHHHHHHHhcc
Confidence 64333 35777888999999999999999999998765 34443 3489999999999991 112557777765
Q ss_pred CCCCCCCCeeeCCCCCCCChHHHHHHhhh
Q 016565 349 GKSLQSLRLLNLRYDMIGNAVSLLLCKLF 377 (387)
Q Consensus 349 n~s~qsLt~L~L~~N~LgD~GVk~LCeaL 377 (387)
= +.|+.|.|...-|..+|++..-.+.
T Consensus 241 W---~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 241 W---NLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred c---chhhhccccchhhccccHHHHHHHh
Confidence 4 3589999999999999999876655
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.75 E-value=3e-05 Score=71.44 Aligned_cols=125 Identities=22% Similarity=0.216 Sum_probs=42.8
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
|+..+++|+|.+|.+.. + |.|...- -+|+.|+|+.+.+.. + ..|...+.|++|+|++|.|.
T Consensus 17 n~~~~~~L~L~~n~I~~--I----e~L~~~l---~~L~~L~Ls~N~I~~---------l-~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--I----ENLGATL---DKLEVLDLSNNQITK---------L-EGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp -------------------------S--TT----TT--EEE-TTS--S------------TT----TT--EEE--SS---
T ss_pred ccccccccccccccccc--c----cchhhhh---cCCCEEECCCCCCcc---------c-cCccChhhhhhcccCCCCCC
Confidence 55578999999999752 2 2333221 268999999999833 2 34667899999999999998
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh-HHHHHHhhhccCc
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA-VSLLLCKLFFPTI 381 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~-GVk~LCeaL~~~~ 381 (387)
+-+.- +-..+ | +|++|+|++|+|..+ ..+ ..|+.. ++|++|+|.+|++.+. +-+.---..+|++
T Consensus 78 ~i~~~-l~~~l--p--~L~~L~L~~N~I~~l------~~l-~~L~~l---~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L 142 (175)
T PF14580_consen 78 SISEG-LDKNL--P--NLQELYLSNNKISDL------NEL-EPLSSL---PKLRVLSLEGNPVCEKKNYRLFVIYKLPSL 142 (175)
T ss_dssp S-CHH-HHHH---T--T--EEE-TTS---SC------CCC-GGGGG----TT--EEE-TT-GGGGSTTHHHHHHHH-TT-
T ss_pred ccccc-hHHhC--C--cCCEEECcCCcCCCh------HHh-HHHHcC---CCcceeeccCCcccchhhHHHHHHHHcChh
Confidence 86431 11122 2 699999999999952 222 334455 5799999999999754 2244444445554
No 12
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.55 E-value=2.2e-05 Score=78.46 Aligned_cols=103 Identities=19% Similarity=0.125 Sum_probs=74.2
Q ss_pred CCCcEEEcccCCC--ChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 225 ETLASLEFLHCKL--SPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 225 ~~Lt~L~L~~n~L--~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+-||+|||++|.+ .|+.||++ | +++.|.++.+++.+ +.+ |..-++|++||||+|.|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~------P-----kir~L~lS~N~i~~---------v~n-La~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLA------P-----KLRRLILSQNRIRT---------VQN-LAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhhccccccchhhhhhhhhhc------c-----ceeEEeccccceee---------ehh-hhhcccceEeecccchhH
Confidence 4699999999996 45666643 4 78999999999844 334 777899999999999993
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
. |+|+-..--++++|.|+.|.|.. +| -|... -||..||+++|+|+.
T Consensus 343 ~------~~Gwh~KLGNIKtL~La~N~iE~---------LS-GL~KL---YSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 343 E------CVGWHLKLGNIKTLKLAQNKIET---------LS-GLRKL---YSLVNLDLSSNQIEE 388 (490)
T ss_pred h------hhhhHhhhcCEeeeehhhhhHhh---------hh-hhHhh---hhheeccccccchhh
Confidence 2 55665555579999999998882 11 11222 346667777777664
No 13
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.41 E-value=0.0002 Score=79.81 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=11.2
Q ss_pred CCCCeeeCCCCCCCC
Q 016565 353 QSLRLLNLRYDMIGN 367 (387)
Q Consensus 353 qsLt~L~L~~N~LgD 367 (387)
++|++|+|+.|.+..
T Consensus 284 ~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 284 QKLISLDLSDNSLSG 298 (968)
T ss_pred cCcCEEECcCCeecc
Confidence 468888888887764
No 14
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.37 E-value=0.00034 Score=78.01 Aligned_cols=86 Identities=23% Similarity=0.265 Sum_probs=45.6
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCccccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~ 337 (387)
+|+.|.|..+.+.. .+-..+...++|+.|||++|.+...... .+.+-. +|++|+|++|++++.
T Consensus 165 ~L~~L~L~~n~l~~--------~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~-~L~~L~L~~n~l~~~---- 227 (968)
T PLN00113 165 SLKVLDLGGNVLVG--------KIPNSLTNLTSLEFLTLASNQLVGQIPR----ELGQMK-SLKWIYLGYNNLSGE---- 227 (968)
T ss_pred CCCEEECccCcccc--------cCChhhhhCcCCCeeeccCCCCcCcCCh----HHcCcC-CccEEECcCCccCCc----
Confidence 56666666555422 1222344455666666666665432222 122222 566666666666631
Q ss_pred CCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 338 DRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 338 ~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
+...+... .+|++|+|++|.+..
T Consensus 228 ----~p~~l~~l---~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 228 ----IPYEIGGL---TSLNHLDLVYNNLTG 250 (968)
T ss_pred ----CChhHhcC---CCCCEEECcCceecc
Confidence 22334444 468889998888764
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00054 Score=71.18 Aligned_cols=237 Identities=20% Similarity=0.199 Sum_probs=125.8
Q ss_pred HHHHHHhccCCC---CcCCC---CCCchHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccchhhhhhhhhhhhhhhhh
Q 016565 86 VWKKLFKTRWSG---FTDQI---EPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLA 159 (387)
Q Consensus 86 ~W~~~~~~rw~~---~~~~~---~~~~W~~~y~E~hLf~CL~E~qEe~fv~~~m~~i~ei~i~~~I~~~~d~~~~~~Cl~ 159 (387)
-|++-|+.|.|. +.+.. .|+|--+.|-||.+.+==+|..+|+-+ ++...-..-+++-..+. .+
T Consensus 49 dgk~YF~~q~P~GGSFik~~kV~~p~d~~~t~~ery~e~~s~~sd~~~~~----------si~nK~vE~iGfDki~a-kQ 117 (505)
T KOG3207|consen 49 DGKRYFQTQHPNGGSFIKPGKVKFPTDLLRTFKERYYEKYSYSSDLESVL----------SISNKQVEFIGFDKIAA-KQ 117 (505)
T ss_pred cceeeeeeecCCCccccCCccCCCCccHHHHHHHHHHHhhcCCcchhhHh----------hhcCceeEEecHHHHHH-Hh
Confidence 599999999998 44443 389999999999877655554442221 11111111122111100 01
Q ss_pred cccccccchhcccCccceEEeee--cccchhhhhhhcccc-ccccccccccccHHhHHHHHHHHhhCCCCCcEEEcccCC
Q 016565 160 CDYSKLSYHCQQFGHYARCLRLQ--NALCVEETCQLLRES-KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK 236 (387)
Q Consensus 160 ~~l~~Ls~~c~~~~~~vr~L~L~--~~L~~~~~~~~~~~C-~Lq~L~l~~~ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~ 236 (387)
+++++| |...|+ .+-+...+ .-.+.| .+++|.++..+-. .+..++... ...++|+.|+|+.|.
T Consensus 118 sn~kkL-----------~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~-eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 118 SNLKKL-----------REISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFH-NWFPVLKIA-EQLPSLENLNLSSNR 183 (505)
T ss_pred hhHHhh-----------hheeecCccccccchh-hhhhhCCcceeecchhhhHH-hHHHHHHHH-Hhcccchhccccccc
Confidence 222222 222222 11111100 001222 1244544432211 123344443 477899999999999
Q ss_pred CChhHHH-HHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhcc
Q 016565 237 LSPSFVE-GICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE 315 (387)
Q Consensus 237 L~d~~v~-~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~ 315 (387)
|. .+.. .+=..+ + .|+.|.|.+|++ . |.++-..+..-|+|..|+|.+|. +-+++.--.+
T Consensus 184 l~-~~~~s~~~~~l--~-----~lK~L~l~~CGl-s------~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~--- 243 (505)
T KOG3207|consen 184 LS-NFISSNTTLLL--S-----HLKQLVLNSCGL-S------WKDVQWILLTFPSLEVLYLEANE--IILIKATSTK--- 243 (505)
T ss_pred cc-CCccccchhhh--h-----hhheEEeccCCC-C------HHHHHHHHHhCCcHHHhhhhccc--ccceecchhh---
Confidence 64 1111 111111 2 578999999998 3 45788889999999999999995 3333321111
Q ss_pred CCCccceEeccCcccCC----------------cccccCCcchhh----hhccCCCCCCCCeeeCCCCCCCC
Q 016565 316 ASSSLSILDLSGNSIGG----------------WLSKYDRSGPLF----SLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 316 psc~L~~L~L~~n~L~g----------------~l~~~~c~~Ls~----aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
-.|.|+.|||++|++-. .+++.+-.+++. .+-....-.+|+.|++..|++.|
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 12378999999987751 111222222322 11111222579999999998854
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.98 E-value=0.00024 Score=53.24 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=43.2
Q ss_pred CCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCC
Q 016565 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMI 365 (387)
Q Consensus 289 ~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~L 365 (387)
|+|+.|+|++|.|..-....+ ..--+|++|+|++|.|++- -..++... ++|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f-----~~l~~L~~L~l~~N~l~~i--------~~~~f~~l---~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF-----SNLPNLETLDLSNNNLTSI--------PPDAFSNL---PNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTT-----TTGTTESEEEETSSSESEE--------ETTTTTTS---TTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHH-----cCCCCCCEeEccCCccCcc--------CHHHHcCC---CCCCEEeCcCCcC
Confidence 578999999998876544322 2223799999999999831 11245555 5799999999986
No 17
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.87 E-value=0.00054 Score=42.72 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=19.6
Q ss_pred CCCCceeeCCCCCCCchhHHHHHH
Q 016565 288 GRSLCSLKLRHCHLDRDFGRMVFS 311 (387)
Q Consensus 288 n~sL~~LdLs~N~L~D~GvklLC~ 311 (387)
+++|++|||++|.++|+|++.||+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhCC
Confidence 578999999999999999999984
No 18
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.87 E-value=0.00044 Score=43.13 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.5
Q ss_pred CCCCeeeCCCCCCCChHHHHHHh
Q 016565 353 QSLRLLNLRYDMIGNAVSLLLCK 375 (387)
Q Consensus 353 qsLt~L~L~~N~LgD~GVk~LCe 375 (387)
++|++|+|+.|.|+|+|++.||+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhCC
Confidence 57999999999999999999985
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.66 E-value=0.0016 Score=70.13 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=70.2
Q ss_pred cccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchh
Q 016565 200 QSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 278 (387)
Q Consensus 200 q~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~ 278 (387)
|+|.+++. ++.... +..-|++||+++++.+|.|. .+- ...++.- +|++|.|.++.+.+
T Consensus 81 ~~LdlsnNkl~~id~-----~~f~nl~nLq~v~l~~N~Lt--~IP----~f~~~sg---hl~~L~L~~N~I~s------- 139 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDF-----EFFYNLPNLQEVNLNKNELT--RIP----RFGHESG---HLEKLDLRHNLISS------- 139 (873)
T ss_pred eeeeccccccccCcH-----HHHhcCCcceeeeeccchhh--hcc----ccccccc---ceeEEeeecccccc-------
Confidence 45666543 333322 22237789999999999974 111 1345555 79999999999855
Q ss_pred HHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccC----CCccceEeccCcccC
Q 016565 279 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEA----SSSLSILDLSGNSIG 331 (387)
Q Consensus 279 ~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~p----sc~L~~L~L~~n~L~ 331 (387)
.-+..|+.-+.|+.||||.|.+. .+..| +-.|++|+|++|.||
T Consensus 140 -v~se~L~~l~alrslDLSrN~is---------~i~~~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 140 -VTSEELSALPALRSLDLSRNLIS---------EIPKPSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred -ccHHHHHhHhhhhhhhhhhchhh---------cccCCCCCCCCCceEEeecccccc
Confidence 45667888889999999999883 23222 135999999999999
No 20
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0029 Score=63.57 Aligned_cols=129 Identities=17% Similarity=0.074 Sum_probs=71.9
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+...|.+|+|+.+.++.+.|..+-..... +|..|.|.++.- .-.. .+++-.-...+.|.+||||+|..-
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise------~l~~LNlsG~rr-nl~~----sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISE------TLTQLNLSGYRR-NLQK----SHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhch------hhhhhhhhhhHh-hhhh----hHHHHHHHhCCceeeecccccccc
Confidence 44556666666666655554433322211 455555553331 1000 134444555677888888887544
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHHHhhh
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLLCKLF 377 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~LCeaL 377 (387)
..|+-...-++. -|++|.|+.|-.- .+..+....+..+|+.||.-+ .+.|+.++++=|.+
T Consensus 327 ~~~~~~~~~kf~----~L~~lSlsRCY~i----------~p~~~~~l~s~psl~yLdv~g-~vsdt~mel~~e~~ 386 (419)
T KOG2120|consen 327 KNDCFQEFFKFN----YLQHLSLSRCYDI----------IPETLLELNSKPSLVYLDVFG-CVSDTTMELLKEML 386 (419)
T ss_pred CchHHHHHHhcc----hheeeehhhhcCC----------ChHHeeeeccCcceEEEEecc-ccCchHHHHHHHhC
Confidence 445443332332 5777777777544 233333333447899999865 57888888887765
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.56 E-value=0.0017 Score=59.93 Aligned_cols=82 Identities=23% Similarity=0.211 Sum_probs=26.1
Q ss_pred cccceeecccccccCCCcchhHHHHHHHh-cCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~-~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~ 336 (387)
++++|.|.++.+.. + .-|. .-.+|+.||||+|.|.+-. +|-.- -.|++|+|++|+|+.
T Consensus 20 ~~~~L~L~~n~I~~---------I-e~L~~~l~~L~~L~Ls~N~I~~l~------~l~~L-~~L~~L~L~~N~I~~---- 78 (175)
T PF14580_consen 20 KLRELNLRGNQIST---------I-ENLGATLDKLEVLDLSNNQITKLE------GLPGL-PRLKTLDLSNNRISS---- 78 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S--T------T-----TT--EEE--SS---S----
T ss_pred cccccccccccccc---------c-cchhhhhcCCCEEECCCCCCcccc------CccCh-hhhhhcccCCCCCCc----
Confidence 68999999999732 2 3354 3478999999999997532 33222 279999999999994
Q ss_pred cCCcchhhhhc-cCCCCCCCCeeeCCCCCCCCh
Q 016565 337 YDRSGPLFSLG-AGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 337 ~~c~~Ls~aL~-~n~s~qsLt~L~L~~N~LgD~ 368 (387)
++..+. .. ++|++|+|++|.|.|-
T Consensus 79 -----i~~~l~~~l---p~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 79 -----ISEGLDKNL---PNLQELYLSNNKISDL 103 (175)
T ss_dssp ------CHHHHHH----TT--EEE-TTS---SC
T ss_pred -----cccchHHhC---CcCCEEECcCCcCCCh
Confidence 323332 34 4699999999999884
No 22
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.52 E-value=0.0018 Score=69.77 Aligned_cols=110 Identities=22% Similarity=0.218 Sum_probs=77.9
Q ss_pred CcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhH
Q 016565 227 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 306 (387)
Q Consensus 227 Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~Gv 306 (387)
-..|+|++|.|.+-.+...-+. | |||+..|.++-+.. +-++-.-...|++|+|.+|.+..--.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl---~-----nLq~v~l~~N~Lt~---------IP~f~~~sghl~~L~L~~N~I~sv~s 142 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNL---P-----NLQEVNLNKNELTR---------IPRFGHESGHLEKLDLRHNLISSVTS 142 (873)
T ss_pred eeeeeccccccccCcHHHHhcC---C-----cceeeeeccchhhh---------cccccccccceeEEeeeccccccccH
Confidence 3469999999988777644333 3 89999999999832 33333445569999999999988777
Q ss_pred HHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChH
Q 016565 307 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAV 369 (387)
Q Consensus 307 klLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~G 369 (387)
..|. +|. .|++|||+.|.|+. .. ..+ +... .++++|||++|.|++-|
T Consensus 143 e~L~-~l~----alrslDLSrN~is~-i~------~~s-fp~~---~ni~~L~La~N~It~l~ 189 (873)
T KOG4194|consen 143 EELS-ALP----ALRSLDLSRNLISE-IP------KPS-FPAK---VNIKKLNLASNRITTLE 189 (873)
T ss_pred HHHH-hHh----hhhhhhhhhchhhc-cc------CCC-CCCC---CCceEEeeccccccccc
Confidence 7666 443 79999999999993 11 000 1111 25889999999888754
No 23
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0014 Score=65.68 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=68.6
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCC-CCCCc
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLDR 303 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~-N~L~D 303 (387)
..|++|||+..++.-+-+. ..|.+ |-+||.++|.+..+-+ +++.-+..|+.|+.||||. |.+..
T Consensus 185 sRlq~lDLS~s~it~stl~---~iLs~----C~kLk~lSlEg~~LdD--------~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLH---GILSQ----CSKLKNLSLEGLRLDD--------PIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhhHHhhcchhheeHHHHH---HHHHH----HHhhhhccccccccCc--------HHHHHHhccccceeeccccccccch
Confidence 3599999999998744433 33433 4468999999888734 6888899999999999986 57888
Q ss_pred hhHHHHHHHhccCCCccceEeccCcccC
Q 016565 304 DFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 304 ~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
.|++++.+... .|+.|+|+.|.++
T Consensus 250 n~~~ll~~scs----~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 250 NALQLLLSSCS----RLDELNLSWCFLF 273 (419)
T ss_pred hHHHHHHHhhh----hHhhcCchHhhcc
Confidence 88888774432 5999999999888
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.32 E-value=0.0021 Score=71.86 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=63.5
Q ss_pred CCCCCcEEEcccCCCChh---HHHHHHHHhcCCC----------c----ccccccceeecccccccCCCcchhHHHHHHH
Q 016565 223 NSETLASLEFLHCKLSPS---FVEGICRSLCSKR----------K----RIHKIENLSIDISSFIENCPSSVVVELVSFL 285 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~---~v~~LCe~L~~p~----------C----~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L 285 (387)
..++|++|+|..|.|.+- +...+=..|+.-+ | ....||.|.+.++.+ +|+| +-+|
T Consensus 308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L-td~c-------~p~l 379 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL-TDSC-------FPVL 379 (1081)
T ss_pred ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc-cccc-------hhhh
Confidence 346899999999997632 2222222111100 1 234789999999998 5544 3568
Q ss_pred hcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 286 ~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
...+.|+.|+||+|.|+..-+..+- .|- .|+.|+|++|.|+
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~-kle----~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLR-KLE----ELEELNLSGNKLT 420 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHh-chH----HhHHHhcccchhh
Confidence 8899999999999999855555433 221 5777778888777
No 25
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.00 E-value=0.002 Score=70.76 Aligned_cols=150 Identities=23% Similarity=0.245 Sum_probs=88.0
Q ss_pred cceEEeeecccch-hhhhhhccccccccccccccccHHhHHHHHH--------HHhhCCCCCcEEEcccCCCChhHHHHH
Q 016565 175 YARCLRLQNALCV-EETCQLLRESKLQSLVLRWIRFEEHVQALCK--------LLIQNSETLASLEFLHCKLSPSFVEGI 245 (387)
Q Consensus 175 ~vr~L~L~~~L~~-~~~~~~~~~C~Lq~L~l~~~ls~~~~~~L~~--------~L~~n~~~Lt~L~L~~n~L~d~~v~~L 245 (387)
.+|.|+|..+=-. ++.....+ -.||+| .|.-|-...++++. .+.=| .|..-+++||.|- .|+
T Consensus 110 sLr~LElrg~~L~~~~GL~~lr-~qLe~L--IC~~Sl~Al~~v~ascggd~~ns~~Wn--~L~~a~fsyN~L~--~mD-- 180 (1096)
T KOG1859|consen 110 SLRVLELRGCDLSTAKGLQELR-HQLEKL--ICHNSLDALRHVFASCGGDISNSPVWN--KLATASFSYNRLV--LMD-- 180 (1096)
T ss_pred ceeeEEecCcchhhhhhhHHHH-Hhhhhh--hhhccHHHHHHHHHHhccccccchhhh--hHhhhhcchhhHH--hHH--
Confidence 3677777732111 22211122 245555 44444445555554 33322 3666778888863 222
Q ss_pred HHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEec
Q 016565 246 CRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL 325 (387)
Q Consensus 246 Ce~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L 325 (387)
++|+--- -++.|.|..+++ . =+.+|+.-+.|+|||||+|.|.- ---|-...|+|+.|.|
T Consensus 181 -~SLqll~----ale~LnLshNk~-~---------~v~~Lr~l~~LkhLDlsyN~L~~------vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 181 -ESLQLLP----ALESLNLSHNKF-T---------KVDNLRRLPKLKHLDLSYNCLRH------VPQLSMVGCKLQLLNL 239 (1096)
T ss_pred -HHHHHHH----Hhhhhccchhhh-h---------hhHHHHhcccccccccccchhcc------ccccchhhhhheeeee
Confidence 2222111 367888888887 3 12368999999999999999832 1134456788999999
Q ss_pred cCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 326 SGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 326 ~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
.+|.++.- .-+.++ ++|.+|||+.|-|.+
T Consensus 240 rnN~l~tL----------~gie~L---ksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 240 RNNALTTL----------RGIENL---KSLYGLDLSYNLLSE 268 (1096)
T ss_pred cccHHHhh----------hhHHhh---hhhhccchhHhhhhc
Confidence 99999920 011133 457777777777765
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.74 E-value=0.014 Score=41.87 Aligned_cols=37 Identities=35% Similarity=0.331 Sum_probs=23.9
Q ss_pred ccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 319 ~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
+|++|+|++|+|+. +...+... ++|+.|+|++|.|.|
T Consensus 2 ~L~~L~l~~N~i~~---------l~~~l~~l---~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD---------LPPELSNL---PNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS---------HGGHGTTC---TTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc---------cCchHhCC---CCCCEEEecCCCCCC
Confidence 47777777777773 33335555 468888888888875
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.67 E-value=0.019 Score=64.18 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=16.7
Q ss_pred CCCCeeeCCCCCCCChHHHHH
Q 016565 353 QSLRLLNLRYDMIGNAVSLLL 373 (387)
Q Consensus 353 qsLt~L~L~~N~LgD~GVk~L 373 (387)
.+|+.|+|++|+|...=.+.|
T Consensus 445 ~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 445 SSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCeEECCCCCCCchHHHHH
Confidence 469999999999997655544
No 28
>PLN03150 hypothetical protein; Provisional
Probab=95.66 E-value=0.015 Score=63.13 Aligned_cols=66 Identities=35% Similarity=0.342 Sum_probs=31.0
Q ss_pred HhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCC
Q 016565 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDM 364 (387)
Q Consensus 285 L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~ 364 (387)
+...++|+.|+|++|.|...--..+. .-..|+.|+|++|+|+|. +-..+... ++|++|+|++|.
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~-----~l~~L~~LdLs~N~lsg~--------iP~~l~~L---~~L~~L~Ls~N~ 501 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLG-----SITSLEVLDLSYNSFNGS--------IPESLGQL---TSLRILNLNGNS 501 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHh-----CCCCCCEEECCCCCCCCC--------CchHHhcC---CCCCEEECcCCc
Confidence 44445666666666665322111111 112566666666666642 11223333 346666666665
Q ss_pred CC
Q 016565 365 IG 366 (387)
Q Consensus 365 Lg 366 (387)
|.
T Consensus 502 l~ 503 (623)
T PLN03150 502 LS 503 (623)
T ss_pred cc
Confidence 54
No 29
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.61 E-value=0.0051 Score=67.72 Aligned_cols=126 Identities=26% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCCcEEEcccCCCCh-hHHHHHHHHhcCCCccccccccee--ecccccccCCCcchhHHHH-------------HHHhcC
Q 016565 225 ETLASLEFLHCKLSP-SFVEGICRSLCSKRKRIHKIENLS--IDISSFIENCPSSVVVELV-------------SFLSSG 288 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d-~~v~~LCe~L~~p~C~~~~Lq~L~--L~~c~l~~~~~~~~~~~L~-------------s~L~~n 288 (387)
++|++|+|.++.|+. .|+.-|-..|.+=.| ...++.|+ +.+|.- +.+-+-.|-.|+ ..|.=-
T Consensus 109 ~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascgg-d~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll 186 (1096)
T KOG1859|consen 109 RSLRVLELRGCDLSTAKGLQELRHQLEKLIC-HNSLDALRHVFASCGG-DISNSPVWNKLATASFSYNRLVLMDESLQLL 186 (1096)
T ss_pred cceeeEEecCcchhhhhhhHHHHHhhhhhhh-hccHHHHHHHHHHhcc-ccccchhhhhHhhhhcchhhHHhHHHHHHHH
Confidence 578888888888864 255555566666666 22233322 223321 211122222222 234445
Q ss_pred CCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCC--cccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG--WLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 289 ~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g--~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
+.|++||||+|++.+-- .|+ .-|.|++|||++|+|+- .+.-.+ + .|..|+||+|.|.
T Consensus 187 ~ale~LnLshNk~~~v~------~Lr-~l~~LkhLDlsyN~L~~vp~l~~~g-----c---------~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD------NLR-RLPKLKHLDLSYNCLRHVPQLSMVG-----C---------KLQLLNLRNNALT 245 (1096)
T ss_pred HHhhhhccchhhhhhhH------HHH-hcccccccccccchhccccccchhh-----h---------hheeeeecccHHH
Confidence 78999999999997643 232 23489999999999992 121111 1 2778999999886
Q ss_pred C-hHHHHH
Q 016565 367 N-AVSLLL 373 (387)
Q Consensus 367 D-~GVk~L 373 (387)
. .||..|
T Consensus 246 tL~gie~L 253 (1096)
T KOG1859|consen 246 TLRGIENL 253 (1096)
T ss_pred hhhhHHhh
Confidence 4 244443
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.61 E-value=0.024 Score=63.32 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=17.8
Q ss_pred CCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 289 ~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
++|+.|||++|.|..- .. -|. .|+.|++++|+|+
T Consensus 302 ~~L~~LdLS~N~L~~L--p~------lp~-~L~~L~Ls~N~L~ 335 (788)
T PRK15387 302 PGLQELSVSDNQLASL--PA------LPS-ELCKLWAYNNQLT 335 (788)
T ss_pred cccceeECCCCccccC--CC------Ccc-cccccccccCccc
Confidence 4566667766666421 10 122 3555556665555
No 31
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.38 E-value=0.027 Score=56.71 Aligned_cols=133 Identities=23% Similarity=0.180 Sum_probs=78.2
Q ss_pred CCCCCcEEEcccCC-CChhHHHHHHHHhcCCCcccccccceeecccc-cccCCCcchhHHHHHHHhcCCCCceeeCCCCC
Q 016565 223 NSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300 (387)
Q Consensus 223 n~~~Lt~L~L~~n~-L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~-l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~ 300 (387)
..++|++|+|+++. ++|.|+..+-+. | .+|+.|.+..|. +++ ..+..+...-++|++|+|+...
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~-----c--~~L~~L~l~~c~~lt~-------~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASR-----C--PNLETLSLSNCSNLTD-------EGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhh-----C--CCcceEccCCCCccch-------hHHHHHHHhcCcccEEeeecCc
Confidence 44677788887777 777777777666 2 367777777666 322 2466777777778888888663
Q ss_pred -CCchhHHHHHHHhccCCCccceEeccCcc----cCC-ccc--ccCC-cchhh-hhccCCCCCCCCeeeCCCCCCCChHH
Q 016565 301 -LDRDFGRMVFSSLLEASSSLSILDLSGNS----IGG-WLS--KYDR-SGPLF-SLGAGKSLQSLRLLNLRYDMIGNAVS 370 (387)
Q Consensus 301 -L~D~GvklLC~~Ll~psc~L~~L~L~~n~----L~g-~l~--~~~c-~~Ls~-aL~~n~s~qsLt~L~L~~N~LgD~GV 370 (387)
+.|.|...+... -..|++|.+.... |+. .+. ...+ ..+.. .+..- ..|+++.|+...+.|.|.
T Consensus 307 ~~~d~~l~~~~~~----c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~---~~l~~~~l~~~~~~~~~~ 379 (482)
T KOG1947|consen 307 GLTDSGLEALLKN----CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSC---PKLTDLSLSYCGISDLGL 379 (482)
T ss_pred cchHHHHHHHHHh----CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcC---CCcchhhhhhhhccCcch
Confidence 347776655321 1135555444333 330 000 0011 12222 22222 579999999988899888
Q ss_pred HHHHhh
Q 016565 371 LLLCKL 376 (387)
Q Consensus 371 k~LCea 376 (387)
..+.++
T Consensus 380 ~~~l~g 385 (482)
T KOG1947|consen 380 ELSLRG 385 (482)
T ss_pred HHHhcC
Confidence 666655
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.28 E-value=0.033 Score=62.05 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=60.7
Q ss_pred CCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchh
Q 016565 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (387)
Q Consensus 226 ~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~G 305 (387)
+|++|+|++|.|.. +. ..+ | -+|+.|.|..|.+ . .++..+ . ++|+.|+|++|.|..
T Consensus 221 nL~~L~Ls~N~Lts--LP---~~l--~----~~L~~L~Ls~N~L-~----~LP~~l----~--s~L~~L~Ls~N~L~~-- 276 (754)
T PRK15370 221 NIKTLYANSNQLTS--IP---ATL--P----DTIQEMELSINRI-T----ELPERL----P--SALQSLDLFHNKISC-- 276 (754)
T ss_pred CCCEEECCCCcccc--CC---hhh--h----ccccEEECcCCcc-C----cCChhH----h--CCCCEEECcCCccCc--
Confidence 68888888888752 11 111 1 1578888888886 3 122222 2 478889999888852
Q ss_pred HHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 306 vklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
+. ..+ +. +|++|+|++|+|++ +...+ + .+|++|+|++|.|..
T Consensus 277 LP---~~l--~~-sL~~L~Ls~N~Lt~---------LP~~l---p--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 277 LP---ENL--PE-ELRYLSVYDNSIRT---------LPAHL---P--SGITHLNVQSNSLTA 318 (754)
T ss_pred cc---ccc--CC-CCcEEECCCCcccc---------Ccccc---h--hhHHHHHhcCCcccc
Confidence 11 112 22 68899999998884 11111 1 258888898888864
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.0097 Score=62.15 Aligned_cols=156 Identities=20% Similarity=0.160 Sum_probs=93.1
Q ss_pred cceEEeeecccchhhhhhhcccccccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCCh-hHHHHHHHHhcCC
Q 016565 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSP-SFVEGICRSLCSK 252 (387)
Q Consensus 175 ~vr~L~L~~~L~~~~~~~~~~~C~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d-~~v~~LCe~L~~p 252 (387)
.|..++.+++.-....- -+|+...+.+. ...++-+. -+.+.++++.|||++|-+.. .-|..+|+.|.
T Consensus 104 ~vE~iGfDki~akQsn~-----kkL~~IsLdn~~V~~~~~~~----~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp-- 172 (505)
T KOG3207|consen 104 QVEFIGFDKIAAKQSNL-----KKLREISLDNYRVEDAGIEE----YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLP-- 172 (505)
T ss_pred eeEEecHHHHHHHhhhH-----HhhhheeecCccccccchhh----hhhhCCcceeecchhhhHHhHHHHHHHHHhcc--
Confidence 35566655554332221 23444455544 33333332 23355789999999998742 23446666663
Q ss_pred CcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcc-cC
Q 016565 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IG 331 (387)
Q Consensus 253 ~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~-L~ 331 (387)
+|++|-|.++.+ .--..+. .- + ..++|+.|.|+...|...-|.-+..+.. +|+.|+|+.|. ++
T Consensus 173 -----~Le~LNls~Nrl-~~~~~s~---~~--~-~l~~lK~L~l~~CGls~k~V~~~~~~fP----sl~~L~L~~N~~~~ 236 (505)
T KOG3207|consen 173 -----SLENLNLSSNRL-SNFISSN---TT--L-LLSHLKQLVLNSCGLSWKDVQWILLTFP----SLEVLYLEANEIIL 236 (505)
T ss_pred -----cchhcccccccc-cCCcccc---ch--h-hhhhhheEEeccCCCCHHHHHHHHHhCC----cHHHhhhhcccccc
Confidence 677888876665 2111111 00 1 3467888999999998888887665443 68899999995 33
Q ss_pred CcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChH
Q 016565 332 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAV 369 (387)
Q Consensus 332 g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~G 369 (387)
. .+-+ +...|.|+.|||++|++-|..
T Consensus 237 ~-----------~~~~-~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 237 I-----------KATS-TKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred e-----------ecch-hhhhhHHhhccccCCcccccc
Confidence 1 1111 111267999999999998754
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.20 E-value=0.0068 Score=61.13 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=24.3
Q ss_pred CCCceeeCCCCCCC--chhHHHHHHHhccCCCccceEeccCcccC
Q 016565 289 RSLCSLKLRHCHLD--RDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 289 ~sL~~LdLs~N~L~--D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
+-|++||||+|.+. |+-||++= .++.|+|+.|.|+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~P--------kir~L~lS~N~i~ 320 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAP--------KLRRLILSQNRIR 320 (490)
T ss_pred hhhhhccccccchhhhhhhhhhcc--------ceeEEecccccee
Confidence 56777888888764 56666554 5677777777777
No 35
>PLN03150 hypothetical protein; Provisional
Probab=95.06 E-value=0.031 Score=60.66 Aligned_cols=108 Identities=21% Similarity=0.253 Sum_probs=71.3
Q ss_pred CCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchh
Q 016565 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (387)
Q Consensus 226 ~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~G 305 (387)
.++.|+|++|.|....-..+ +...+|+.|.|..+.+.. .+-..+...++|+.|||++|.+...-
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i--------~~L~~L~~L~Ls~N~l~g--------~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI--------SKLRHLQSINLSGNSIRG--------NIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred EEEEEECCCCCccccCCHHH--------hCCCCCCEEECCCCcccC--------cCChHHhCCCCCCEEECCCCCCCCCC
Confidence 37889999998752222211 123479999999998743 23344677899999999999997544
Q ss_pred HHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCC
Q 016565 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDM 364 (387)
Q Consensus 306 vklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~ 364 (387)
-..+. .| .+|+.|+|++|+++|.+. ..|.... .++..+++.+|.
T Consensus 483 P~~l~-~L----~~L~~L~Ls~N~l~g~iP--------~~l~~~~--~~~~~l~~~~N~ 526 (623)
T PLN03150 483 PESLG-QL----TSLRILNLNGNSLSGRVP--------AALGGRL--LHRASFNFTDNA 526 (623)
T ss_pred chHHh-cC----CCCCEEECcCCcccccCC--------hHHhhcc--ccCceEEecCCc
Confidence 33333 22 279999999999997322 2222111 236678888875
No 36
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.96 E-value=0.0036 Score=58.81 Aligned_cols=117 Identities=24% Similarity=0.271 Sum_probs=73.6
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++.|.|.|++|.|.. .---+. .-.+|+.|.+.++++ + ++--.+++-|+|++|+++-|.|.
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia--------~l~nlevln~~nnqi-e--------~lp~~issl~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIA--------ELKNLEVLNLSNNQI-E--------ELPTSISSLPKLRILNVGMNRLN 92 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHH--------Hhhhhhhhhcccchh-h--------hcChhhhhchhhhheecchhhhh
Confidence 44678999999999741 100111 122899999999997 6 45566788899999999988772
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCC----------------cccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGG----------------WLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g----------------~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
- +=.|... --.|+.|||..|+|.. .+.+.+-+.+--..... .+|..|.||.|+|-
T Consensus 93 ~-----lprgfgs-~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~l---t~lqil~lrdndll 163 (264)
T KOG0617|consen 93 I-----LPRGFGS-FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKL---TNLQILSLRDNDLL 163 (264)
T ss_pred c-----CccccCC-CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhh---cceeEEeeccCchh
Confidence 1 1112221 2259999999999983 11122222222233333 45778888888764
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.87 E-value=0.0034 Score=47.00 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=34.2
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI 330 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L 330 (387)
+|++|.|..+++.+... .++...++|++||+++|.|..-...+ +.+ --+|+.|+|++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~--------~~f~~l~~L~~L~l~~N~l~~i~~~~----f~~-l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPP--------DSFSNLPNLETLDLSNNNLTSIPPDA----FSN-LPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECT--------TTTTTGTTESEEEETSSSESEEETTT----TTT-STTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCH--------HHHcCCCCCCEeEccCCccCccCHHH----HcC-CCCCCEEeCcCCcC
Confidence 45556666555522111 23455677888888888876544332 222 22688888888765
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.04 Score=55.60 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=57.1
Q ss_pred HHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCc
Q 016565 213 VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLC 292 (387)
Q Consensus 213 ~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~ 292 (387)
+.+++..|- +.|+||.|+|++|.|. +.++ .|--|.. +|+.+-|.+..+ . |...-+.|..-|.++
T Consensus 86 WseI~~ile-~lP~l~~LNls~N~L~-s~I~----~lp~p~~---nl~~lVLNgT~L-~------w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 86 WSEIGAILE-QLPALTTLNLSCNSLS-SDIK----SLPLPLK---NLRVLVLNGTGL-S------WTQSTSSLDDLPKVT 149 (418)
T ss_pred HHHHHHHHh-cCccceEeeccCCcCC-Cccc----cCccccc---ceEEEEEcCCCC-C------hhhhhhhhhcchhhh
Confidence 456666666 8899999999999998 4444 3335666 999999999887 4 234668888899999
Q ss_pred eeeCCCCCC
Q 016565 293 SLKLRHCHL 301 (387)
Q Consensus 293 ~LdLs~N~L 301 (387)
+|++|+|.+
T Consensus 150 elHmS~N~~ 158 (418)
T KOG2982|consen 150 ELHMSDNSL 158 (418)
T ss_pred hhhhccchh
Confidence 999999944
No 39
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.61 E-value=0.11 Score=52.28 Aligned_cols=38 Identities=32% Similarity=0.251 Sum_probs=18.5
Q ss_pred CCCCceeeCCCCC-CCchhHHHHHHHhccCCCccceEeccCcc
Q 016565 288 GRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (387)
Q Consensus 288 n~sL~~LdLs~N~-L~D~GvklLC~~Ll~psc~L~~L~L~~n~ 329 (387)
.++|++|+|+... +.|.|...+... ...|++|.+.+|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~----c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASR----CPNLETLSLSNCS 280 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhh----CCCcceEccCCCC
Confidence 3455555555554 555555555433 1135555555444
No 40
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.46 E-value=0.017 Score=65.03 Aligned_cols=77 Identities=23% Similarity=0.196 Sum_probs=41.2
Q ss_pred cHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcC
Q 016565 209 FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG 288 (387)
Q Consensus 209 s~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n 288 (387)
+......+- ..++...+|+-|+..+|.| +...-+.-+.. +|+.+.+..+.+ + .+--.+..-
T Consensus 249 s~n~l~~lp-~wi~~~~nle~l~~n~N~l----~~lp~ri~~~~-----~L~~l~~~~nel-~--------yip~~le~~ 309 (1081)
T KOG0618|consen 249 SHNNLSNLP-EWIGACANLEALNANHNRL----VALPLRISRIT-----SLVSLSAAYNEL-E--------YIPPFLEGL 309 (1081)
T ss_pred chhhhhcch-HHHHhcccceEecccchhH----HhhHHHHhhhh-----hHHHHHhhhhhh-h--------hCCCccccc
Confidence 334444444 3444667899999999987 33333332222 344445555554 3 233344445
Q ss_pred CCCceeeCCCCCCCch
Q 016565 289 RSLCSLKLRHCHLDRD 304 (387)
Q Consensus 289 ~sL~~LdLs~N~L~D~ 304 (387)
++|++|||-.|.|++-
T Consensus 310 ~sL~tLdL~~N~L~~l 325 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSL 325 (1081)
T ss_pred ceeeeeeehhcccccc
Confidence 5666666666666543
No 41
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=94.43 E-value=0.061 Score=59.97 Aligned_cols=21 Identities=5% Similarity=0.053 Sum_probs=16.7
Q ss_pred CCCCeeeCCCCCCCChHHHHH
Q 016565 353 QSLRLLNLRYDMIGNAVSLLL 373 (387)
Q Consensus 353 qsLt~L~L~~N~LgD~GVk~L 373 (387)
.++..|+|.+|+|....++.|
T Consensus 415 ~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 415 PQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred CCccEEEeeCCCccHHHHHHH
Confidence 357899999999987766654
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.12 E-value=0.042 Score=39.40 Aligned_cols=13 Identities=46% Similarity=0.664 Sum_probs=6.5
Q ss_pred ccceEeccCcccC
Q 016565 319 SLSILDLSGNSIG 331 (387)
Q Consensus 319 ~L~~L~L~~n~L~ 331 (387)
+|++|+|++|.|+
T Consensus 25 ~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 25 NLETLNLSNNPIS 37 (44)
T ss_dssp TSSEEEETSSCCS
T ss_pred CCCEEEecCCCCC
Confidence 4555555555544
No 43
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=93.95 E-value=0.014 Score=63.66 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=9.1
Q ss_pred CCCcEEEcccCCCC
Q 016565 225 ETLASLEFLHCKLS 238 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~ 238 (387)
.+|+||.+.+|.|-
T Consensus 55 qkLEHLs~~HN~L~ 68 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLI 68 (1255)
T ss_pred hhhhhhhhhhhhhH
Confidence 45777777777653
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.06 E-value=0.21 Score=55.30 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=30.0
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHHHhc
Q 016565 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTC 43 (387)
Q Consensus 4 ~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~~~~ 43 (387)
+|+|..+-.+.||..+..|.-.+ ..+.|+|+--.+|-+.
T Consensus 2 ~~sl~~~a~~~ia~~i~ng~y~~-~~~~ld~~sSn~i~~~ 40 (699)
T KOG3665|consen 2 VSSLADIACQKIAEYIQNGSYNN-LQYELDPKSSNKIYSE 40 (699)
T ss_pred CCchhhhhHHHHHHHHhcCCccc-cceecChhhhHHHHHH
Confidence 47899999999999999876655 5577778776666554
No 45
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=92.76 E-value=0.015 Score=63.43 Aligned_cols=77 Identities=22% Similarity=0.116 Sum_probs=41.6
Q ss_pred HhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCC--------------cccccCCcchhhhhccCC
Q 016565 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG--------------WLSKYDRSGPLFSLGAGK 350 (387)
Q Consensus 285 L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g--------------~l~~~~c~~Ls~aL~~n~ 350 (387)
|-+-.+|+.+|||+|.|-- +=+.|-.-- +|.+|+|++|.||. .++......|-.|+-.+
T Consensus 218 ld~l~NL~dvDlS~N~Lp~-----vPecly~l~-~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL- 290 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLPI-----VPECLYKLR-NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL- 290 (1255)
T ss_pred hhhhhhhhhccccccCCCc-----chHHHhhhh-hhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhh-
Confidence 4444567777777777621 111111111 46777777777762 11111222344455455
Q ss_pred CCCCCCeeeCCCCCCCChHH
Q 016565 351 SLQSLRLLNLRYDMIGNAVS 370 (387)
Q Consensus 351 s~qsLt~L~L~~N~LgD~GV 370 (387)
..||.|.+.+|.|.=+|+
T Consensus 291 --~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 291 --TKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred --HHHHHHHhccCcccccCC
Confidence 358888888888877664
No 46
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=92.25 E-value=0.067 Score=52.92 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHHhccCCCC--CcccccCChhhHHHHHhcCCch-hhhhhhccCCccccCCCCCCCcccccCcccccCCC
Q 016565 6 SLISLAALAVKRELLLGDDV--IPYVYELPADLFDILLTCLPPL-ALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGN 82 (387)
Q Consensus 6 ~L~~lc~~~i~~~~~~~~~~--~p~~~~l~~~~~~~~~~~lp~~-~l~~~~~~~p~~~~~~~~~~~~~~~~~~kr~r~~~ 82 (387)
+.+-+=.|.++.+..-++.. -|-+.|||-|.+--|+-|||.. -|+++..+.|.= +.+..++-
T Consensus 177 m~til~~qqv~~~iqi~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl--~~l~~e~~------------- 241 (332)
T KOG3926|consen 177 METILRWQQVLSQIQITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETL--AKLSEERR------------- 241 (332)
T ss_pred HHHHHHHHHHHHhhcccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHH--HHHHHHHH-------------
Confidence 34556677777777765443 3778999999999999999986 455444333211 13323332
Q ss_pred chHHHHHHHhccCCCCcC------CCC-CCchHHHHHHH
Q 016565 83 FNTVWKKLFKTRWSGFTD------QIE-PVDWQQRYWEA 114 (387)
Q Consensus 83 ~~~~W~~~~~~rw~~~~~------~~~-~~~W~~~y~E~ 114 (387)
.||.+|+-+....-. +.. .-|||||||.-
T Consensus 242 ---iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L 277 (332)
T KOG3926|consen 242 ---IWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQL 277 (332)
T ss_pred ---HHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHH
Confidence 899999988776211 111 45799999963
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.09 E-value=0.049 Score=53.40 Aligned_cols=40 Identities=25% Similarity=0.203 Sum_probs=21.0
Q ss_pred CCCCceeeCCCCCCC-chhHHHHHHHhccCCCccceEeccCcccC
Q 016565 288 GRSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 288 n~sL~~LdLs~N~L~-D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
.++|+.|+||+|..+ ..|+-.|.+.. | +|++|+|+.|.|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~--P--~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKA--P--NLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhC--C--ceeEEeecCCccc
Confidence 445666666666332 33444444443 2 4666666666665
No 48
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.85 E-value=0.13 Score=53.75 Aligned_cols=116 Identities=22% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
..++|+.|+|+.|.|-+--++ -++| -.||.+.|+.+.+-. +-.++---+.|..+--++|.++
T Consensus 433 ~l~kLt~L~L~NN~Ln~LP~e--~~~l-------v~Lq~LnlS~NrFr~---------lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLNDLPEE--MGSL-------VRLQTLNLSFNRFRM---------LPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred hhhcceeeecccchhhhcchh--hhhh-------hhhheeccccccccc---------chHHHhhHHHHHHHHhcccccc
Confidence 456788888888886432222 1111 146777777666511 2222333334444445556665
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLL 373 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~L 373 (387)
.-.+. |+++-. .|++|||.+|.|.. +--.|... ++|+||.|.+|++.-.--+-|
T Consensus 495 ~vd~~----~l~nm~-nL~tLDL~nNdlq~---------IPp~Lgnm---tnL~hLeL~gNpfr~Pr~~iL 548 (565)
T KOG0472|consen 495 SVDPS----GLKNMR-NLTTLDLQNNDLQQ---------IPPILGNM---TNLRHLELDGNPFRQPRHQIL 548 (565)
T ss_pred ccChH----Hhhhhh-hcceeccCCCchhh---------CChhhccc---cceeEEEecCCccCCCHHHHh
Confidence 44433 333333 89999999999982 11223333 579999999999975444433
No 49
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=91.79 E-value=0.3 Score=56.74 Aligned_cols=12 Identities=42% Similarity=0.193 Sum_probs=8.0
Q ss_pred ccceEeccCccc
Q 016565 319 SLSILDLSGNSI 330 (387)
Q Consensus 319 ~L~~L~L~~n~L 330 (387)
+|++|+|++|..
T Consensus 779 sL~~L~Ls~n~~ 790 (1153)
T PLN03210 779 SLTRLFLSDIPS 790 (1153)
T ss_pred cchheeCCCCCC
Confidence 577777777643
No 50
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=91.61 E-value=0.28 Score=49.84 Aligned_cols=122 Identities=13% Similarity=0.135 Sum_probs=89.8
Q ss_pred HHHhhCCCCCcEEEcccCC-CChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeC
Q 016565 218 KLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKL 296 (387)
Q Consensus 218 ~~L~~n~~~Lt~L~L~~n~-L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdL 296 (387)
.-+-.+-++|++.++..+. +.....+..+++|+.-.- ++.|+|..... .+-|+ ..++..|..|++|++|++
T Consensus 191 eri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~----vk~Fsla~tr~-~d~vA---~a~a~ml~~n~sl~slnv 262 (353)
T KOG3735|consen 191 ERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTH----VKKFSLANTRS-SDPVA---FAIAEMLKENKSLTSLNV 262 (353)
T ss_pred HHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCch----hhhhhhhcccC-CchhH---HHHHHHHhhcchhhheec
Confidence 4455677899999998887 777788899999988755 89999998775 54444 468999999999999999
Q ss_pred CCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCC
Q 016565 297 RHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK 350 (387)
Q Consensus 297 s~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~ 350 (387)
+.|.|.-.|..++-.+|+.-. +|..|.. +|+.. ++...-=..++.+|..|.
T Consensus 263 esnFItg~gi~a~~~al~~n~-tl~el~~-dnqrq-~lg~~vemeia~~leen~ 313 (353)
T KOG3735|consen 263 ESNFITGLGIMALLRALQSNK-SLTELKN-DNQRQ-VLGNAVEMEIALELEENA 313 (353)
T ss_pred cccccccHHHHHHHHHHhccc-hhhHhhh-hhHHh-hcccHHHHHHHHHHHhcc
Confidence 999999999999998997665 5555532 23332 221111134555666664
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.48 E-value=0.11 Score=52.22 Aligned_cols=120 Identities=24% Similarity=0.222 Sum_probs=72.6
Q ss_pred CCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchh
Q 016565 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (387)
Q Consensus 226 ~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~G 305 (387)
+|++|++++|.+.+- .+.++. ..+|+.|.+..+.++ ++.......+.|+.|++++|.+.+-=
T Consensus 141 nL~~L~l~~N~i~~l-----~~~~~~----l~~L~~L~l~~N~l~---------~l~~~~~~~~~L~~L~ls~N~i~~l~ 202 (394)
T COG4886 141 NLKELDLSDNKIESL-----PSPLRN----LPNLKNLDLSFNDLS---------DLPKLLSNLSNLNNLDLSGNKISDLP 202 (394)
T ss_pred hcccccccccchhhh-----hhhhhc----cccccccccCCchhh---------hhhhhhhhhhhhhheeccCCccccCc
Confidence 789999998887632 122333 337899999999973 36665557889999999999997765
Q ss_pred HHHHHHHhccCCCccceEeccCcc-cC--C------cccccCCc--chhhhhccCCCCCCCCeeeCCCCCCCChH
Q 016565 306 GRMVFSSLLEASSSLSILDLSGNS-IG--G------WLSKYDRS--GPLFSLGAGKSLQSLRLLNLRYDMIGNAV 369 (387)
Q Consensus 306 vklLC~~Ll~psc~L~~L~L~~n~-L~--g------~l~~~~c~--~Ls~aL~~n~s~qsLt~L~L~~N~LgD~G 369 (387)
... ..++ .|++|++++|. +. . .+....+. .+...........+|+.|++++|.+.+-.
T Consensus 203 ~~~-----~~~~-~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 203 PEI-----ELLS-ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred hhh-----hhhh-hhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence 542 1112 58888888884 33 1 10000000 00000111111245888999999888753
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.15 E-value=0.11 Score=47.48 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=49.0
Q ss_pred HHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeee
Q 016565 280 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 359 (387)
Q Consensus 280 ~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~ 359 (387)
+..+.|+.+..|+.-+||+|.+.+.--+. -.--..+++|+|++|.|.. +-..|... ..|+.||
T Consensus 44 davy~l~~~~el~~i~ls~N~fk~fp~kf-----t~kf~t~t~lNl~~neisd---------vPeE~Aam---~aLr~lN 106 (177)
T KOG4579|consen 44 DAVYMLSKGYELTKISLSDNGFKKFPKKF-----TIKFPTATTLNLANNEISD---------VPEELAAM---PALRSLN 106 (177)
T ss_pred HHHHHHhCCceEEEEecccchhhhCCHHH-----hhccchhhhhhcchhhhhh---------chHHHhhh---HHhhhcc
Confidence 56778888888888899999886554332 2222368888999998883 22234444 3588888
Q ss_pred CCCCCCCC
Q 016565 360 LRYDMIGN 367 (387)
Q Consensus 360 L~~N~LgD 367 (387)
+|.|.|.-
T Consensus 107 l~~N~l~~ 114 (177)
T KOG4579|consen 107 LRFNPLNA 114 (177)
T ss_pred cccCcccc
Confidence 88888864
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.77 E-value=0.26 Score=49.92 Aligned_cols=89 Identities=17% Similarity=0.102 Sum_probs=64.3
Q ss_pred CCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchh
Q 016565 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (387)
Q Consensus 226 ~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~G 305 (387)
-|.-|.|.++.+...|.-.+...+.. .++.+.|+.+.+. .|+++++.|..-|.|+.|+||.|.|. +-
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~------~v~elDL~~N~iS------dWseI~~ile~lP~l~~LNls~N~L~-s~ 112 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVT------DVKELDLTGNLIS------DWSEIGAILEQLPALTTLNLSCNSLS-SD 112 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhh------hhhhhhcccchhc------cHHHHHHHHhcCccceEeeccCCcCC-Cc
Confidence 45566667777776666655554432 4678888888863 37799999999999999999999993 33
Q ss_pred HHHHHHHhccCCCccceEeccCcccC
Q 016565 306 GRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 306 vklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
++. |--|--+|++|.|.+-.|.
T Consensus 113 I~~----lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 113 IKS----LPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred ccc----CcccccceEEEEEcCCCCC
Confidence 432 3235558999999887777
No 54
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=90.55 E-value=0.48 Score=40.21 Aligned_cols=65 Identities=26% Similarity=0.506 Sum_probs=49.9
Q ss_pred cccCChhhHHHHHhcCCchhhhhhhccCCccccCCC-CCCCcccccCcccccCCCchHHHHHHHhccCCCC---cCCCCC
Q 016565 29 VYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGF---TDQIEP 104 (387)
Q Consensus 29 ~~~l~~~~~~~~~~~lp~~~l~~~~~~~p~~~~~~~-~~~~~~~~~~~kr~r~~~~~~~W~~~~~~rw~~~---~~~~~~ 104 (387)
|.++|-+++.-|+.+.+|.-|..++.+=| ++ ++-| .-|+++++.--|.. .....+
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np-----~l~~~td----------------eLW~~~i~rdFp~~~~~~~~~~~ 62 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNP-----HLIEDTD----------------ELWKKLIKRDFPEESKRQKPKEP 62 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCC-----CcchhhH----------------HHHHHHHHhHCcChhhccccccc
Confidence 67899999999999999999999996544 33 2222 37999999999963 233336
Q ss_pred CchHHHHHHH
Q 016565 105 VDWQQRYWEA 114 (387)
Q Consensus 105 ~~W~~~y~E~ 114 (387)
.+|+.+|...
T Consensus 63 ~~Wr~~Y~~~ 72 (109)
T PF06881_consen 63 ESWRELYEKL 72 (109)
T ss_pred chHHHHHHHH
Confidence 7899999864
No 55
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=90.27 E-value=0.33 Score=56.39 Aligned_cols=36 Identities=36% Similarity=0.381 Sum_probs=20.5
Q ss_pred CCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 288 n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
-++|+.|+|++|..-.. +-....+|+.|+|++|.|+
T Consensus 824 L~sL~~L~Ls~c~~L~~--------~p~~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 824 LESLESLDLSGCSRLRT--------FPDISTNISDLNLSRTGIE 859 (1153)
T ss_pred ccccCEEECCCCCcccc--------ccccccccCEeECCCCCCc
Confidence 45666777766533211 1111236788888888777
No 56
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.75 E-value=0.24 Score=51.86 Aligned_cols=82 Identities=29% Similarity=0.303 Sum_probs=57.2
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCccccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~ 337 (387)
-|++|.++.+++ + - -=+.++..-++|..|||.+|+|..--.. +| .|+ +|++|||++|.|++
T Consensus 229 ~L~Elh~g~N~i-~----~---lpae~~~~L~~l~vLDLRdNklke~Pde-~c-lLr----sL~rLDlSNN~is~----- 289 (565)
T KOG0472|consen 229 LLKELHVGENQI-E----M---LPAEHLKHLNSLLVLDLRDNKLKEVPDE-IC-LLR----SLERLDLSNNDISS----- 289 (565)
T ss_pred HHHHHHhcccHH-H----h---hHHHHhcccccceeeeccccccccCchH-HH-Hhh----hhhhhcccCCcccc-----
Confidence 456666776665 3 1 1245667778999999999999765443 34 444 79999999999995
Q ss_pred CCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 338 DRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 338 ~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
+--.|+.. .|+.|-|-+|+|.
T Consensus 290 ----Lp~sLgnl----hL~~L~leGNPlr 310 (565)
T KOG0472|consen 290 ----LPYSLGNL----HLKFLALEGNPLR 310 (565)
T ss_pred ----CCcccccc----eeeehhhcCCchH
Confidence 22223333 5888999999875
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.02 E-value=0.17 Score=50.73 Aligned_cols=42 Identities=33% Similarity=0.279 Sum_probs=19.1
Q ss_pred HHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 284 ~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
.+..-+.|+.|++++|++.+-..-.- .+. .|+.|++++|.++
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~~~~-----~~~-~L~~L~ls~N~i~ 199 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPKLLS-----NLS-NLNNLDLSGNKIS 199 (394)
T ss_pred hhhccccccccccCCchhhhhhhhhh-----hhh-hhhheeccCCccc
Confidence 34444555555555555544332210 111 4555555555555
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.68 E-value=0.29 Score=46.95 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=22.3
Q ss_pred CceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 291 L~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
.-.+||++|.+.+.+ .|-++. .|.+|.|.+|+|+
T Consensus 44 ~d~iDLtdNdl~~l~------~lp~l~-rL~tLll~nNrIt 77 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD------NLPHLP-RLHTLLLNNNRIT 77 (233)
T ss_pred cceecccccchhhcc------cCCCcc-ccceEEecCCcce
Confidence 445677777775544 444555 6777777777777
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.68 E-value=0.24 Score=50.78 Aligned_cols=18 Identities=33% Similarity=0.248 Sum_probs=8.9
Q ss_pred HhcCCCCceeeCCCCCCC
Q 016565 285 LSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 285 L~~n~sL~~LdLs~N~L~ 302 (387)
+.+-++|++||||+|.|.
T Consensus 114 l~~~~~L~~L~ls~N~I~ 131 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKIT 131 (414)
T ss_pred hhhhhcchheeccccccc
Confidence 344445555555555553
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=83.24 E-value=0.63 Score=47.70 Aligned_cols=83 Identities=25% Similarity=0.223 Sum_probs=47.3
Q ss_pred CCCCCcEEEcccCCCChh-HHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPS-FVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~-~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L 301 (387)
..++|++|+|++|.+.+- ++. . ...|+.|.+.++.+ .+ ..-+....+|+.|+|++|.+
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l~-------~----l~~L~~L~l~~N~i-~~---------~~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGLS-------T----LTLLKELNLSGNLI-SD---------ISGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred hhhcchheeccccccccccchh-------h----ccchhhheeccCcc-hh---------ccCCccchhhhcccCCcchh
Confidence 446777777777776421 111 1 11377777777775 31 12234466777777777777
Q ss_pred CchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 302 ~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
.+-.-- . ...-+.|+.|++++|.+.
T Consensus 175 ~~ie~~----~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 175 VDIEND----E-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhhhh----h-hhhccchHHHhccCCchh
Confidence 544331 0 122336777777777777
No 61
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.79 E-value=0.55 Score=49.91 Aligned_cols=82 Identities=22% Similarity=0.175 Sum_probs=55.0
Q ss_pred CCCceeeCCCCCCCchhHHHHHHHhccCCC--------------------------------ccceEeccCcccCCcccc
Q 016565 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASS--------------------------------SLSILDLSGNSIGGWLSK 336 (387)
Q Consensus 289 ~sL~~LdLs~N~L~D~GvklLC~~Ll~psc--------------------------------~L~~L~L~~n~L~g~l~~ 336 (387)
+-+++|+.++|.+.-+|.-.+ ++....| .+..|.++.|.+..
T Consensus 354 ~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka---- 427 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA---- 427 (553)
T ss_pred eeeeEeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc----
Confidence 457788888888877776665 3433221 15555666666651
Q ss_pred cCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHHHhhhccC
Q 016565 337 YDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLLCKLFFPT 380 (387)
Q Consensus 337 ~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~LCeaL~~~ 380 (387)
++..+.....++|+|..|++++|.-||.|...|-+|+..+
T Consensus 428 ----~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n 467 (553)
T KOG4242|consen 428 ----GLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSN 467 (553)
T ss_pred ----cHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCC
Confidence 2333333334447899999999999999999999998654
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=82.52 E-value=2 Score=45.29 Aligned_cols=137 Identities=19% Similarity=0.178 Sum_probs=90.5
Q ss_pred HHHHHHhhCCCCCcEEEcccCC-CChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCce
Q 016565 215 ALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCS 293 (387)
Q Consensus 215 ~L~~~L~~n~~~Lt~L~L~~n~-L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~ 293 (387)
..--+|.++..+|+.|.|..+. ++|.|.-.+ .. + +..|+.+.+..|....+. .|++.=..-+.|+.
T Consensus 310 ~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l----~r--n-~~~Le~l~~e~~~~~~d~------tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQVLELSGCQQFSDRGFTML----GR--N-CPHLERLDLEECGLITDG------TLASLSRNCPRLRV 376 (483)
T ss_pred HHHHHHhcCCCceEEEeccccchhhhhhhhhh----hc--C-Chhhhhhcccccceehhh------hHhhhccCCchhcc
Confidence 3345788898999999999998 555555433 22 2 568999999988853311 25554444589999
Q ss_pred eeCCCC-CCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCC-CCCCChHHH
Q 016565 294 LKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRY-DMIGNAVSL 371 (387)
Q Consensus 294 LdLs~N-~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~-N~LgD~GVk 371 (387)
|.|++- .+.|+|.+.+-+.=.+.. .|+.|.|.+|.++. -.+|..+..+++|+..+|-. -.+-.+|++
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~-~l~~lEL~n~p~i~----------d~~Le~l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLE-GLEVLELDNCPLIT----------DATLEHLSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred CChhhhhhhhhhhhhhhhhcccccc-ccceeeecCCCCch----------HHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence 999987 578999998775444444 68888999998882 12344444456788877732 223344555
Q ss_pred HHHh
Q 016565 372 LLCK 375 (387)
Q Consensus 372 ~LCe 375 (387)
.+..
T Consensus 446 ~~~~ 449 (483)
T KOG4341|consen 446 RFAT 449 (483)
T ss_pred HHHh
Confidence 4443
No 63
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=81.75 E-value=0.96 Score=47.38 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=34.7
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L 301 (387)
.+++|+-|+|++|.+. ..-+.-.|++. .+|.|.|+.+++ + . .=..++..-..|+.|+|.+|.|
T Consensus 272 ~L~~L~~lnlsnN~i~-~i~~~aFe~~a-------~l~eL~L~~N~l-~----~---v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKIT-RIEDGAFEGAA-------ELQELYLTRNKL-E----F---VSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred hcccceEeccCCCccc-hhhhhhhcchh-------hhhhhhcCcchH-H----H---HHHHhhhccccceeeeecCCee
Confidence 5678999999999985 22223333332 456666666665 3 0 1112333334555566666655
No 64
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=81.55 E-value=0.5 Score=51.34 Aligned_cols=121 Identities=20% Similarity=0.134 Sum_probs=80.5
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+...||+|+|+.|.++ .|--+.| .+-|+.|-+.++++ . .++.++ .--++|.+||.|.|.+.
T Consensus 119 ~L~~lt~l~ls~NqlS---------~lp~~lC-~lpLkvli~sNNkl-~----~lp~~i----g~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLS---------HLPDGLC-DLPLKVLIVSNNKL-T----SLPEEI----GLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred hhhHHHHhhhccchhh---------cCChhhh-cCcceeEEEecCcc-c----cCCccc----ccchhHHHhhhhhhhhh
Confidence 5567999999999986 3444556 66899999999997 3 233343 34678999999999986
Q ss_pred chhHHHHHHHhc---c----C-----------CCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCC
Q 016565 303 RDFGRMVFSSLL---E----A-----------SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDM 364 (387)
Q Consensus 303 D~GvklLC~~Ll---~----p-----------sc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~ 364 (387)
.--.++ + +|. . . +=.|.+||+++|+|+- |--.+... +.|..|-|-+|+
T Consensus 180 slpsql-~-~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~---------iPv~fr~m---~~Lq~l~LenNP 245 (722)
T KOG0532|consen 180 SLPSQL-G-YLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISY---------LPVDFRKM---RHLQVLQLENNP 245 (722)
T ss_pred hchHHh-h-hHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceee---------cchhhhhh---hhheeeeeccCC
Confidence 554443 2 121 0 0 1137888888888882 11112223 568999999999
Q ss_pred CCChHHHHHHhh
Q 016565 365 IGNAVSLLLCKL 376 (387)
Q Consensus 365 LgD~GVk~LCea 376 (387)
|+..-++.--+|
T Consensus 246 LqSPPAqIC~kG 257 (722)
T KOG0532|consen 246 LQSPPAQICEKG 257 (722)
T ss_pred CCCChHHHHhcc
Confidence 998766643333
No 65
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.49 E-value=1.7 Score=27.41 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.3
Q ss_pred CCCceeeCCCC-CCCchhHHHHH
Q 016565 289 RSLCSLKLRHC-HLDRDFGRMVF 310 (387)
Q Consensus 289 ~sL~~LdLs~N-~L~D~GvklLC 310 (387)
++|++|+|++. .+.|.|+..|.
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 67999999998 59999999876
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=80.44 E-value=2.5 Score=47.08 Aligned_cols=126 Identities=22% Similarity=0.222 Sum_probs=77.5
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
..|+|++|.+.+-.+....+-.+|..+ | ||..|.++++++ . .| +-++..++|+.|.+-+=.+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sF--p-----NL~sLDIS~TnI-~--------nl-~GIS~LknLq~L~mrnLe~e 208 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASF--P-----NLRSLDISGTNI-S--------NL-SGISRLKNLQVLSMRNLEFE 208 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhcc--C-----ccceeecCCCCc-c--------Cc-HHHhccccHHHHhccCCCCC
Confidence 345666666666666555555555554 2 566666666665 2 12 44555666666666555555
Q ss_pred c-hhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHHHh
Q 016565 303 R-DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLLCK 375 (387)
Q Consensus 303 D-~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~LCe 375 (387)
+ .-.+-|+ .|. +|+.||++.-.... ...-+-.-+.+...++.|+.||-++..+-++=++.+.+
T Consensus 209 ~~~~l~~LF-~L~----~L~vLDIS~~~~~~-----~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 209 SYQDLIDLF-NLK----KLRVLDISRDKNND-----DTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred chhhHHHHh-ccc----CCCeeecccccccc-----chHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 4 3344444 333 68888888877772 11223335556666788999999999999888777765
No 67
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.30 E-value=1.7 Score=27.44 Aligned_cols=23 Identities=30% Similarity=0.173 Sum_probs=19.6
Q ss_pred CCCCeeeCCCC-CCCChHHHHHHh
Q 016565 353 QSLRLLNLRYD-MIGNAVSLLLCK 375 (387)
Q Consensus 353 qsLt~L~L~~N-~LgD~GVk~LCe 375 (387)
++|++|+|+.. .+.|.|+..|.+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHhc
Confidence 46999999997 599999998864
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=79.43 E-value=1.1 Score=25.90 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=5.2
Q ss_pred CCceeeCCCCCC
Q 016565 290 SLCSLKLRHCHL 301 (387)
Q Consensus 290 sL~~LdLs~N~L 301 (387)
+|+.|||++|.|
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 69
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=78.96 E-value=0.38 Score=45.58 Aligned_cols=42 Identities=29% Similarity=0.306 Sum_probs=25.5
Q ss_pred HhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCC
Q 016565 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (387)
Q Consensus 285 L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g 332 (387)
|-.-...+.|.||+|+|.----. ++ .|+ +|+.|++.+|+|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppn-ia-~l~----nlevln~~nnqie~ 70 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPN-IA-ELK----NLEVLNLSNNQIEE 70 (264)
T ss_pred ccchhhhhhhhcccCceeecCCc-HH-Hhh----hhhhhhcccchhhh
Confidence 33445677888888888321100 11 122 58888888888883
No 70
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=77.19 E-value=0.14 Score=55.35 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=63.8
Q ss_pred cCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcc
Q 016565 250 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (387)
Q Consensus 250 ~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~ 329 (387)
-.+.|++..|+.|.|-.+.++. +--.+..-..|+.|||+.|.|.-- ..-|| .|-|+.|-+++|+
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~---------ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC------~lpLkvli~sNNk 154 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRT---------IPEAICNLEALTFLDLSSNQLSHL-PDGLC------DLPLKVLIVSNNK 154 (722)
T ss_pred chHHHHHHHHHHHHHHhcccee---------cchhhhhhhHHHHhhhccchhhcC-Chhhh------cCcceeEEEecCc
Confidence 3445666678888888777655 445566677899999999998422 22234 4579999999999
Q ss_pred cC-Cc----cc------ccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 330 IG-GW----LS------KYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 330 L~-g~----l~------~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
|+ +. +. .+++-.+..+.+......+|..|+++.|.+.+-
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC
Confidence 99 21 11 223333433333333334566666666666653
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=76.10 E-value=1.1 Score=44.09 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=40.6
Q ss_pred cccceeeccc--ccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCC
Q 016565 258 KIENLSIDIS--SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (387)
Q Consensus 258 ~Lq~L~L~~c--~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g 332 (387)
+||+|-++.+ ++.. .+.-....-|+|++|+||.|.+.+ +..|- .|..-. +|..|+|.+|..+.
T Consensus 66 ~LkkL~lsdn~~~~~~--------~l~vl~e~~P~l~~l~ls~Nki~~--lstl~-pl~~l~-nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSG--------GLEVLAEKAPNLKVLNLSGNKIKD--LSTLR-PLKELE-NLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCcccccc--------cceehhhhCCceeEEeecCCcccc--ccccc-hhhhhc-chhhhhcccCCccc
Confidence 5666666655 3211 222223333999999999999987 44433 333333 58899999999884
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=72.63 E-value=1.9 Score=39.55 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=72.2
Q ss_pred HHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCC
Q 016565 219 LLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH 298 (387)
Q Consensus 219 ~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~ 298 (387)
-|+.+ .+|+--+|++|.+. .+-+.+- -+-| .+..|.|..+.+ . +++.+ +.+-++|+.|+++.
T Consensus 48 ~l~~~-~el~~i~ls~N~fk-~fp~kft--~kf~-----t~t~lNl~~nei-s----dvPeE----~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 48 MLSKG-YELTKISLSDNGFK-KFPKKFT--IKFP-----TATTLNLANNEI-S----DVPEE----LAAMPALRSLNLRF 109 (177)
T ss_pred HHhCC-ceEEEEecccchhh-hCCHHHh--hccc-----hhhhhhcchhhh-h----hchHH----HhhhHHhhhccccc
Confidence 45534 57888899998864 2222110 1122 566777888887 3 34445 55678899999999
Q ss_pred CCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhc-cCCCCCCCCeeeCCCCCCCCh
Q 016565 299 CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG-AGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 299 N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~-~n~s~qsLt~L~L~~N~LgD~ 368 (387)
|++ ...++.+.. |. +|-.|+.-+|.+.. -+.. ++. .+ +---+|++|.++|.
T Consensus 110 N~l-~~~p~vi~~-L~----~l~~Lds~~na~~e-------id~d-l~~s~~-----~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 110 NPL-NAEPRVIAP-LI----KLDMLDSPENARAE-------IDVD-LFYSSL-----PALIKLGNEPLGDE 161 (177)
T ss_pred Ccc-ccchHHHHH-HH----hHHHhcCCCCcccc-------CcHH-Hhcccc-----HHHHHhcCCccccc
Confidence 999 677787774 65 67788888888884 1122 222 22 33345689999985
No 73
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.25 E-value=2.1 Score=45.67 Aligned_cols=53 Identities=15% Similarity=0.042 Sum_probs=42.3
Q ss_pred hHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 278 ~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
...+...+.++|+|..||+++|..||.|++.|-.++. .+|.+..-..+.|..+
T Consensus 429 l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq-~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 429 LESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQ-SNCRLRPIPDSLNLPE 481 (553)
T ss_pred HHHHHHhhccCcccccccccCCCcccCCCCcCccccC-CCCccCCCCCCCCCcc
Confidence 3466777888888888888888888888888887765 4458888888888888
No 74
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=70.10 E-value=10 Score=26.60 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHHH
Q 016565 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (387)
Q Consensus 3 ~~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~~ 41 (387)
.||||..||--+|-+++.. +.+. -..||+.+++.+.
T Consensus 2 ~~~sLq~LCR~~Ir~~~~~--~~i~-~LpLP~~Lk~yL~ 37 (39)
T cd03717 2 SVRSLQHLCRFVIRQCTRR--DLID-QLPLPRRLKDYLK 37 (39)
T ss_pred CCCCHHHHHHHHHHHHccc--cccc-cCCCCHHHHHHHH
Confidence 5799999999999999852 1211 1356677777664
No 75
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=69.17 E-value=6.3 Score=40.37 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=38.8
Q ss_pred CCCceeeCCCC-CCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 289 RSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 289 ~sL~~LdLs~N-~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
+.|++.+|+.+ .+.-.-.+..+++|+.-. ..+.-.|.+=+.....+ .+++.-|..| ++||+||+.+|.|--
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt-~vk~Fsla~tr~~d~vA----~a~a~ml~~n---~sl~slnvesnFItg 269 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNT-HVKKFSLANTRSSDPVA----FAIAEMLKEN---KSLTSLNVESNFITG 269 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCc-hhhhhhhhcccCCchhH----HHHHHHHhhc---chhhheecccccccc
Confidence 45666666555 344444555555555443 33333333333331111 2233333344 345566666666665
Q ss_pred hHHHHHHhhhc
Q 016565 368 AVSLLLCKLFF 378 (387)
Q Consensus 368 ~GVk~LCeaL~ 378 (387)
.|+.++-.||.
T Consensus 270 ~gi~a~~~al~ 280 (353)
T KOG3735|consen 270 LGIMALLRALQ 280 (353)
T ss_pred HHHHHHHHHHh
Confidence 55555555553
No 76
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=66.53 E-value=2.9 Score=43.97 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=50.3
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCccccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~ 337 (387)
+|+++.|+++.+....- .+...-.+|++|.|..|+|..---+ ...--..|++|+|.+|+||-
T Consensus 275 ~L~~lnlsnN~i~~i~~--------~aFe~~a~l~eL~L~~N~l~~v~~~-----~f~~ls~L~tL~L~~N~it~----- 336 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIED--------GAFEGAAELQELYLTRNKLEFVSSG-----MFQGLSGLKTLSLYDNQITT----- 336 (498)
T ss_pred cceEeccCCCccchhhh--------hhhcchhhhhhhhcCcchHHHHHHH-----hhhccccceeeeecCCeeEE-----
Confidence 56666677777643211 1233345666777777776433222 22222379999999999992
Q ss_pred CCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 338 DRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 338 ~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
-..-|+... .+|+.|+|-.|++-
T Consensus 337 ---~~~~aF~~~---~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 337 ---VAPGAFQTL---FSLSTLNLLSNPFN 359 (498)
T ss_pred ---Eeccccccc---ceeeeeehccCccc
Confidence 011234444 46899999988864
No 77
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=65.89 E-value=10 Score=27.64 Aligned_cols=36 Identities=25% Similarity=0.166 Sum_probs=24.2
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHH
Q 016565 2 VKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDIL 40 (387)
Q Consensus 2 ~~~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~ 40 (387)
.++|||.+||-.+|.++...| .+.. ..||.-+++.+
T Consensus 1 ~k~~SLQ~LCR~~I~~~t~~~--~I~~-LPLP~~Lk~yL 36 (43)
T cd03742 1 NKVLSLQDLCCRAIVSCTPVY--LIDK-LPLPVSIKSHL 36 (43)
T ss_pred CccccHHHHHHHHHHHhCCcc--hhhh-CCCCHHHHHHH
Confidence 378999999999999997621 1111 24556666653
No 78
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=57.83 E-value=17 Score=26.30 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHH
Q 016565 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDIL 40 (387)
Q Consensus 3 ~~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~ 40 (387)
++|||..||-.+|-++.... -.++.||-.+++.+
T Consensus 2 ~v~SLQHLCR~~In~~~~~~----~~~~~LP~~Lk~yL 35 (42)
T cd03737 2 SVSTLQHLCRKTVNGHLDSY----EKRTQLPLPIKEFL 35 (42)
T ss_pred CcccHHHHHHHHHHHhcCcc----cchhhccHHHHHHH
Confidence 57999999999999886521 12556777666663
No 79
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=56.53 E-value=25 Score=25.55 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=24.9
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHHH
Q 016565 2 VKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (387)
Q Consensus 2 ~~~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~~ 41 (387)
+.||+|.+||-..|.++...+ .+-. ..||.-+++.+-
T Consensus 1 ~~~~sLQhLCR~tI~~~~~~~--~i~~-lpLP~~LKdyL~ 37 (43)
T cd03735 1 VRVRPLQELCRKSIVATFGRE--NLAR-IPLNPVLKDYLK 37 (43)
T ss_pred CCccCHHHHHHHHHHHhcCcc--cccc-CcCCHHHHHHHH
Confidence 468999999999999996422 1111 156677766654
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=56.29 E-value=5.8 Score=24.09 Aligned_cols=12 Identities=58% Similarity=0.872 Sum_probs=6.6
Q ss_pred cceEeccCcccC
Q 016565 320 LSILDLSGNSIG 331 (387)
Q Consensus 320 L~~L~L~~n~L~ 331 (387)
|+.|+|++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.62 E-value=6.1 Score=38.05 Aligned_cols=12 Identities=8% Similarity=-0.006 Sum_probs=5.1
Q ss_pred HHHHHHhhhccC
Q 016565 369 VSLLLCKLFFPT 380 (387)
Q Consensus 369 GVk~LCeaL~~~ 380 (387)
+++..-|..+|.
T Consensus 194 ~~~~~Le~aLP~ 205 (221)
T KOG3864|consen 194 LVQRQLEEALPK 205 (221)
T ss_pred HHHHHHHHhCcc
Confidence 444444444443
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.15 E-value=12 Score=40.63 Aligned_cols=116 Identities=18% Similarity=0.098 Sum_probs=70.3
Q ss_pred cCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCC--CCCchhHHHHHHHhccCCCccceEeccC
Q 016565 250 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSG 327 (387)
Q Consensus 250 ~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N--~L~D~GvklLC~~Ll~psc~L~~L~L~~ 327 (387)
+|..=.+-.|+.+.|..+.++. - ..++++=...|.|+.|+||+| .+.+. .-|- +++.+ .|++|.|.+
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~---L---d~~sslsq~apklk~L~LS~N~~~~~~~--~el~-K~k~l--~Leel~l~G 279 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYH---L---DALSSLSQIAPKLKTLDLSHNHSKISSE--SELD-KLKGL--PLEELVLEG 279 (585)
T ss_pred HHhhcCCcceeeeecccchhhc---h---hhhhHHHHhcchhheeecccchhhhcch--hhhh-hhcCC--CHHHeeecC
Confidence 4433344478889999888755 1 247777778899999999999 33221 1111 22222 499999999
Q ss_pred cccCCcccccCCcchhhhhccCCCCCCCCee-------------------eCCCCCCCChHHHHHHhhhccC
Q 016565 328 NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL-------------------NLRYDMIGNAVSLLLCKLFFPT 380 (387)
Q Consensus 328 n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L-------------------~L~~N~LgD~GVk~LCeaL~~~ 380 (387)
|-|..-.. ..-++++.....-| .|+.| -..+|.+|+++++.|-+.++.+
T Consensus 280 NPlc~tf~-~~s~yv~~i~~~FP---KL~~LDG~ev~~~~~d~~~~~~~~p~k~~ff~~~~l~~LV~~Fl~~ 347 (585)
T KOG3763|consen 280 NPLCTTFS-DRSEYVSAIRELFP---KLLRLDGVEVQPEVIDINASETPMPCKQNFFGSEELKQLVLQFLQQ 347 (585)
T ss_pred Cccccchh-hhHHHHHHHHHhcc---hheeecCcccCccccccccccCCcchhhcccCchHHHHHHHHHHHH
Confidence 99983111 00022332222332 12222 2567889999999998887654
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.04 E-value=8.3 Score=37.13 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=36.0
Q ss_pred HHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCC-CCCchhHHHHHHHhccCCCccceEec
Q 016565 247 RSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDL 325 (387)
Q Consensus 247 e~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N-~L~D~GvklLC~~Ll~psc~L~~L~L 325 (387)
++|.|=.+ ...|+.+++.+|.--+|.|- ...=--.++|+.||||.+ .+.|.|+.-|- .|+ +|+.|.|
T Consensus 116 eGle~L~~-l~~i~~l~l~~ck~~dD~~L------~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lk----nLr~L~l 183 (221)
T KOG3864|consen 116 EGLEHLRD-LRSIKSLSLANCKYFDDWCL------ERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLK----NLRRLHL 183 (221)
T ss_pred HHHHHHhc-cchhhhheeccccchhhHHH------HHhcccccchheeeccCCCeechhHHHHHH-Hhh----hhHHHHh
Confidence 44444444 45677777777775332222 111113467777777755 56666655443 222 5555555
Q ss_pred cC
Q 016565 326 SG 327 (387)
Q Consensus 326 ~~ 327 (387)
.+
T Consensus 184 ~~ 185 (221)
T KOG3864|consen 184 YD 185 (221)
T ss_pred cC
Confidence 43
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=49.25 E-value=15 Score=22.78 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=12.0
Q ss_pred CCCCeeeCCCCCCCC
Q 016565 353 QSLRLLNLRYDMIGN 367 (387)
Q Consensus 353 qsLt~L~L~~N~LgD 367 (387)
.+|++|+|+.|.|..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 358889999998875
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=49.25 E-value=15 Score=22.78 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=12.0
Q ss_pred CCCCeeeCCCCCCCC
Q 016565 353 QSLRLLNLRYDMIGN 367 (387)
Q Consensus 353 qsLt~L~L~~N~LgD 367 (387)
.+|++|+|+.|.|..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 358889999998875
No 86
>PF07525 SOCS_box: SOCS box; InterPro: IPR001496 The SOCS box was first identified in SH2-domain-containing proteins of the suppressor of cytokines signalling (SOCS) family [] but was later also found in: the WSB (WD-40-repeat-containing proteins with a SOCS box) family, the SSB (SPRY domain-containing proteins with a SOCS box) family, the ASB (ankyrin-repeat-containing proteins with a SOCS box) family, and ras and ras-like GTPases []. The SOCS box found in these proteins is an about 50 amino acid carboxy-terminal domain composed of two blocks of well-conserved residues separated by between 2 and 10 non-conserved residues []. The C-terminal conserved region is an L/P-rich sequence of unknown function, whereas the N-terminal conserved region is a consensus BC box [], which binds to the Elongin BC complex [, ]. It has been proposed that this association could couple bound proteins to the ubiquitination or proteasomal compartments [].; GO: 0035556 intracellular signal transduction; PDB: 2XAI_A 2JZ3_A 2C9W_A 2FNJ_A 2IZV_A.
Probab=48.55 E-value=19 Score=25.13 Aligned_cols=35 Identities=37% Similarity=0.440 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCccc--ccCChhhHHHH
Q 016565 4 APSLISLAALAVKRELLLGDDVIPYV--YELPADLFDIL 40 (387)
Q Consensus 4 ~p~L~~lc~~~i~~~~~~~~~~~p~~--~~l~~~~~~~~ 40 (387)
||||.+||=.+|.+.+..+.. +.+ ..||+.+.+.+
T Consensus 1 p~sLq~LCR~~Ir~~l~~~~~--~~i~~LpLP~~L~~yL 37 (40)
T PF07525_consen 1 PPSLQHLCRLAIRRSLGKKGL--ERIDKLPLPPRLKDYL 37 (40)
T ss_dssp ---HHHHHHHHHHHHSSCCHG--GGGGGSSS-HHHHHHH
T ss_pred CccHHHHHHHHHHHHhChhhc--cccccCCCCHHHHHHH
Confidence 599999999999999773221 123 34666666655
No 87
>PRK15386 type III secretion protein GogB; Provisional
Probab=48.28 E-value=40 Score=35.66 Aligned_cols=75 Identities=13% Similarity=0.316 Sum_probs=39.7
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCC-CC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HL 301 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N-~L 301 (387)
...++++|+++++.|..- . .-|. +|+.|.+..|.--+ .++ ..+ -++|+.|++++| .|
T Consensus 50 ~~~~l~~L~Is~c~L~sL--P------~LP~----sLtsL~Lsnc~nLt----sLP----~~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 50 EARASGRLYIKDCDIESL--P------VLPN----ELTEITIENCNNLT----TLP----GSI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred HhcCCCEEEeCCCCCccc--C------CCCC----CCcEEEccCCCCcc----cCC----chh--hhhhhheEccCcccc
Confidence 335788888888765311 1 1232 47777776644211 111 112 246777777776 44
Q ss_pred CchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 302 ~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
. . -|. .|++|+|..+.+.
T Consensus 108 ~---------s--LP~-sLe~L~L~~n~~~ 125 (426)
T PRK15386 108 S---------G--LPE-SVRSLEIKGSATD 125 (426)
T ss_pred c---------c--ccc-ccceEEeCCCCCc
Confidence 2 1 144 5777777666543
No 88
>cd03587 SOCS SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins with a SOCS box), and WSBs (WD40 repeat-containing proteins with a SOCS box), as well as, other miscellaneous proteins. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=45.92 E-value=43 Score=23.46 Aligned_cols=37 Identities=41% Similarity=0.409 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHHHhccC-CCCCcccccCChhhHHHHH
Q 016565 4 APSLISLAALAVKRELLLG-DDVIPYVYELPADLFDILL 41 (387)
Q Consensus 4 ~p~L~~lc~~~i~~~~~~~-~~~~p~~~~l~~~~~~~~~ 41 (387)
+|+|.+||--+|-+++-.. .+.++. ..||..+++.+.
T Consensus 2 p~sLq~LCR~~Ir~~lg~~~~~~i~~-LpLP~~Lk~yL~ 39 (41)
T cd03587 2 PRSLQHLCRLAIRRCLGKRRLDLIDK-LPLPPRLKDYLL 39 (41)
T ss_pred CcCHHHHHHHHHHHHHCccccccccc-CCCCHHHHHHHc
Confidence 6999999999999998521 112222 356677777664
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=43.87 E-value=18 Score=23.42 Aligned_cols=14 Identities=29% Similarity=0.346 Sum_probs=12.1
Q ss_pred CCCCeeeCCCCCCC
Q 016565 353 QSLRLLNLRYDMIG 366 (387)
Q Consensus 353 qsLt~L~L~~N~Lg 366 (387)
.+|+.|+|+.|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46999999999985
No 90
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate neuronal differentiation by controlling expression of a neurogenic transcription factor, Neurogenin-1. SOCS2 binds to GH receptors and inhibits the activation of STAT5b induced by GH. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=42.19 E-value=53 Score=23.43 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=24.5
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHHH
Q 016565 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (387)
Q Consensus 3 ~~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~~ 41 (387)
++|||..||=-+|.+... .++. ..||+.+++.+.
T Consensus 2 ~~~sLQhLCR~~I~~~~~----~i~~-LpLP~~Lk~yL~ 35 (41)
T cd03736 2 STPSLQHLCRITINKCTR----QIQE-LPLPTRLKDYLT 35 (41)
T ss_pred CCCCHHHHHHHHHHHhcC----CCCc-CCCCHHHHHHHH
Confidence 479999999999987643 4443 467777777654
No 91
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.63 E-value=18 Score=36.77 Aligned_cols=62 Identities=23% Similarity=0.080 Sum_probs=31.0
Q ss_pred CCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeee
Q 016565 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 359 (387)
Q Consensus 288 n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~ 359 (387)
-+.|++|-|..|.|.|-.--. -|++-. +|++|+|.+|-=.| .++-.+-+.||..++ +||-||
T Consensus 62 CtrLkElYLRkN~I~sldEL~---YLknlp-sLr~LWL~ENPCc~---~ag~nYR~~VLR~LP---nLkKLD 123 (388)
T KOG2123|consen 62 CTRLKELYLRKNCIESLDELE---YLKNLP-SLRTLWLDENPCCG---EAGQNYRRKVLRVLP---NLKKLD 123 (388)
T ss_pred HHHHHHHHHHhcccccHHHHH---HHhcCc-hhhhHhhccCCccc---ccchhHHHHHHHHcc---cchhcc
Confidence 444555555555553322111 222222 46666666654432 234455566888885 577665
No 92
>cd03716 SOCS_ASB_like SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable number of repeats. SSB proteins contain a central SPRY domain and a C-terminal SOCS. Recently, it has been shown that all four SSB proteins interact with the MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), and that SSB-1, SSB-2, and SSB-4 interact with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain.
Probab=40.54 E-value=60 Score=22.94 Aligned_cols=38 Identities=37% Similarity=0.414 Sum_probs=25.6
Q ss_pred CCCcHHHHHHHHHHHHhccCC-CCCcccccCChhhHHHHH
Q 016565 3 KAPSLISLAALAVKRELLLGD-DVIPYVYELPADLFDILL 41 (387)
Q Consensus 3 ~~p~L~~lc~~~i~~~~~~~~-~~~p~~~~l~~~~~~~~~ 41 (387)
.+|+|.+||--+|-+++-... ..++. ..||..+++.++
T Consensus 2 ~P~sLq~LCR~~Ir~~lg~~~~~~i~~-LplP~~Lk~yLl 40 (42)
T cd03716 2 TPRSLQHLCRLAIRRCLGRRRLELIKK-LPLPPRLKDYLL 40 (42)
T ss_pred CCCCHHHHHHHHHHHHhCccccccCcc-CCCCHHHHHHHc
Confidence 469999999999999987331 12222 356677776653
No 93
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=39.55 E-value=63 Score=23.01 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHHH
Q 016565 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (387)
Q Consensus 3 ~~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~~ 41 (387)
.+|||..||--+|.+.+.. +.+ .-..||+.+++.+.
T Consensus 6 ~~~sLqhLCR~~I~~~~~~--~~i-~~LpLP~~lk~yL~ 41 (43)
T smart00253 6 NVPSLQHLCRFTIRRCTRT--DQI-KTLPLPPKLKDYLS 41 (43)
T ss_pred CCCCHHHHHHHHHHHHcCC--cCc-ccCCCCHHHHHHHH
Confidence 5699999999999999773 111 12356777777654
No 94
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=38.52 E-value=55 Score=23.37 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHHHh
Q 016565 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLT 42 (387)
Q Consensus 3 ~~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~~~ 42 (387)
.||||..||--+|.+.... +.++. ..||+.+++.+.+
T Consensus 2 ~v~sLqhLCR~~Ir~~~~~--~~i~~-LpLP~~Lk~yL~~ 38 (41)
T cd03740 2 QVRSLQYLCRFVIRQYTRI--DLIQK-LPLPNKMKGYLLE 38 (41)
T ss_pred CcccHHHHHHHHHHHHcch--hhccc-CCCCHHHHHHHHc
Confidence 4699999999999998531 22222 3577877777654
No 95
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=37.67 E-value=71 Score=22.93 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHHH
Q 016565 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (387)
Q Consensus 3 ~~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~~ 41 (387)
++|||..||=-+|.++.. .++ -..||+.+++.+.
T Consensus 2 ~~~sLQHLCR~~I~~~~~----~i~-~LpLP~~L~~yL~ 35 (41)
T cd03734 2 SARSLQHLCRLVINRLVT----DVD-CLPLPRRMADYLR 35 (41)
T ss_pred CCccHHHHHHHHHHHhcC----Ccc-cCCCCHHHHHHHH
Confidence 579999999999998864 222 2356676666654
No 96
>cd03718 SOCS_SSB1_4 SOCS (suppressors of cytokine signaling) box of SSB1 and SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 and SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF) and also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=36.32 E-value=72 Score=22.71 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHHHhccCC-CCCcccccCChhhHHHH
Q 016565 3 KAPSLISLAALAVKRELLLGD-DVIPYVYELPADLFDIL 40 (387)
Q Consensus 3 ~~p~L~~lc~~~i~~~~~~~~-~~~p~~~~l~~~~~~~~ 40 (387)
++++|.+||--+|-+.+-..- ..++.+ .||+-+++.+
T Consensus 2 ~P~sLq~LCR~~Ir~~lg~~~~~~I~~L-pLP~~Lk~yL 39 (42)
T cd03718 2 EPLPLMDLCRRRVRVALGRDRLEEIEQL-PLPPSLKNYL 39 (42)
T ss_pred CCCCHHHHHHHHHHHHhCcccccccccC-CCCHHHHHHH
Confidence 458999999999999996331 133333 3556666654
No 97
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=33.19 E-value=18 Score=17.47 Aligned_cols=7 Identities=57% Similarity=1.350 Sum_probs=5.7
Q ss_pred cCccccc
Q 016565 379 PTINSWQ 385 (387)
Q Consensus 379 ~~~~~~~ 385 (387)
|+.|||-
T Consensus 2 pafnswg 8 (8)
T PF08260_consen 2 PAFNSWG 8 (8)
T ss_pred ccccccC
Confidence 7889993
No 98
>cd03746 SOCS_WSB1_SWIP1 SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh). The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=31.65 E-value=89 Score=22.20 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHHHh
Q 016565 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLT 42 (387)
Q Consensus 4 ~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~~~ 42 (387)
||||..||=-+|-+++..+ .++. ..||+.+++.+..
T Consensus 3 v~sLQhLCR~~Ir~~~~~~--~i~~-LpLP~~Lk~YL~y 38 (40)
T cd03746 3 VASLQHLCRMAIRRVMPTQ--QVKE-LPIPSKLLEFLTY 38 (40)
T ss_pred CcCHHHHHHHHHHHHcccc--cccc-CCCCHHHHHHHhc
Confidence 7999999999999887632 2222 3577777777643
No 99
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=31.44 E-value=37 Score=23.80 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=16.6
Q ss_pred cccCChhhHHHHHhcCCchhhh
Q 016565 29 VYELPADLFDILLTCLPPLALQ 50 (387)
Q Consensus 29 ~~~l~~~~~~~~~~~lp~~~l~ 50 (387)
+..||+|.+.+|.+.|||.-+-
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~ 22 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLL 22 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHH
Confidence 3579999999999999988444
No 100
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.12 E-value=21 Score=36.39 Aligned_cols=86 Identities=20% Similarity=0.092 Sum_probs=59.8
Q ss_pred cccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCccc
Q 016565 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335 (387)
Q Consensus 256 ~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~ 335 (387)
..++++|..-+|.+ . |+ ++...-+.|..|.||=|++..-- .|-+-. +|+.|+|..|.|..
T Consensus 18 l~~vkKLNcwg~~L-~--------DI-sic~kMp~lEVLsLSvNkIssL~------pl~rCt-rLkElYLRkN~I~s--- 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL-D--------DI-SICEKMPLLEVLSLSVNKISSLA------PLQRCT-RLKELYLRKNCIES--- 77 (388)
T ss_pred HHHhhhhcccCCCc-c--------HH-HHHHhcccceeEEeeccccccch------hHHHHH-HHHHHHHHhccccc---
Confidence 45778888888887 4 34 55566899999999999984322 222212 58899999999983
Q ss_pred ccCCcchhh--hhccCCCCCCCCeeeCCCCCCCChHH
Q 016565 336 KYDRSGPLF--SLGAGKSLQSLRLLNLRYDMIGNAVS 370 (387)
Q Consensus 336 ~~~c~~Ls~--aL~~n~s~qsLt~L~L~~N~LgD~GV 370 (387)
+.. -|... ++|+.|-|..|+=--+|.
T Consensus 78 ------ldEL~YLknl---psLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 78 ------LDELEYLKNL---PSLRTLWLDENPCCGEAG 105 (388)
T ss_pred ------HHHHHHHhcC---chhhhHhhccCCcccccc
Confidence 333 34455 579999999998654443
No 101
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=30.07 E-value=32 Score=40.95 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=19.5
Q ss_pred cCCCCcCCCC-CCc--hHHHHHHHHHHH
Q 016565 94 RWSGFTDQIE-PVD--WQQRYWEAHVQG 118 (387)
Q Consensus 94 rw~~~~~~~~-~~~--W~~~y~E~hLf~ 118 (387)
+=|.|+-..+ .|= |||-||++||-.
T Consensus 1308 YtPfCdsR~EMDGyRFWK~GYW~~hL~g 1335 (1470)
T KOG1879|consen 1308 YTPFCDSRREMDGYRFWKQGYWKKHLRG 1335 (1470)
T ss_pred cCccccccccccchhHHhhhHHHHHhcc
Confidence 4577887777 444 999999999965
No 102
>cd03722 SOCS_ASB3 SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha by direct targeting of tumor necrosis factor receptor II (TNF-R2) for ubiquitination and proteasome-mediated degradation. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=29.87 E-value=98 Score=23.17 Aligned_cols=41 Identities=29% Similarity=0.334 Sum_probs=27.4
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCcc-c--ccCChhhHHHHHh
Q 016565 2 VKAPSLISLAALAVKRELLLGDDVIPY-V--YELPADLFDILLT 42 (387)
Q Consensus 2 ~~~p~L~~lc~~~i~~~~~~~~~~~p~-~--~~l~~~~~~~~~~ 42 (387)
+.+|||..||=-+|-+++-...-..|. + ..||+-+++.+.-
T Consensus 1 ~~~~sLqhLCRl~IR~~lg~~~l~~~~~i~~LpLP~~Lk~YL~y 44 (51)
T cd03722 1 ASVPSLTHLCRLEIRSSLKSERLRSDSFICQLPLPRSLQDYLLY 44 (51)
T ss_pred CCCccHHHHHHHHHHHHcchhhcccccccccCCCCHHHHHHHhh
Confidence 357999999999999987632111122 3 3677887777654
No 103
>cd03733 SOCS_WSB_SWIP SOCS (suppressors of cytokine signaling) box of WSB/SWiP-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2), and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh), as well as, their isoforms WSB-2 and SWiP-2. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=28.59 E-value=1e+02 Score=21.70 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHH
Q 016565 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDIL 40 (387)
Q Consensus 4 ~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~ 40 (387)
||||..||=-+|-+++..+ .++. ..||+.+++.+
T Consensus 3 v~sLqhLCR~~Ir~~~~~~--~i~~-LpLP~~Lk~YL 36 (39)
T cd03733 3 VSSLQHLCRMALRRVMTTQ--QVLA-LPIPKKMKEFL 36 (39)
T ss_pred CCCHHHHHHHHHHHHcccc--cccc-CCCCHHHHHHH
Confidence 5999999999999988631 2221 25666666654
No 104
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=27.35 E-value=40 Score=32.77 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=63.1
Q ss_pred CCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchh
Q 016565 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (387)
Q Consensus 226 ~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~G 305 (387)
..-.+||++|.+... +.|-++. +|+.|-|..+.++..+. +|..+ .+.|+.|-|++|.|..-|
T Consensus 43 ~~d~iDLtdNdl~~l------~~lp~l~----rL~tLll~nNrIt~I~p-----~L~~~---~p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL------DNLPHLP----RLHTLLLNNNRITRIDP-----DLDTF---LPNLKTLILTNNSIQELG 104 (233)
T ss_pred ccceecccccchhhc------ccCCCcc----ccceEEecCCcceeecc-----chhhh---ccccceEEecCcchhhhh
Confidence 567788888887522 2344443 57888888888866444 24333 567888888888886554
Q ss_pred HHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCC
Q 016565 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRY 362 (387)
Q Consensus 306 vklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~ 362 (387)
=- +.|..-. +|+.|.+-+|.++. .. -+-..++-.. ++|+.||-.+
T Consensus 105 dl---~pLa~~p-~L~~Ltll~Npv~~---k~--~YR~yvl~kl---p~l~~LDF~k 149 (233)
T KOG1644|consen 105 DL---DPLASCP-KLEYLTLLGNPVEH---KK--NYRLYVLYKL---PSLRTLDFQK 149 (233)
T ss_pred hc---chhccCC-ccceeeecCCchhc---cc--CceeEEEEec---CcceEeehhh
Confidence 21 1222211 58888888888872 00 1111244455 3577777643
No 105
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=26.03 E-value=41 Score=21.98 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=11.3
Q ss_pred CCCCeeeCCCCCCCC
Q 016565 353 QSLRLLNLRYDMIGN 367 (387)
Q Consensus 353 qsLt~L~L~~N~LgD 367 (387)
++|+.|+.++|.|..
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 358888888888764
No 106
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=25.85 E-value=59 Score=37.46 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=37.0
Q ss_pred HHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCc--ccccccceeecccccccCCCcchhHHHHHHHhcCCCCcee
Q 016565 217 CKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK--RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSL 294 (387)
Q Consensus 217 ~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C--~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~L 294 (387)
...+....++|..|||++|.= +.++ |.. ..-+||+|.|..+.+ . .|-..|..-++|.+|
T Consensus 563 s~~ff~~m~~LrVLDLs~~~~---l~~L-------P~~I~~Li~LryL~L~~t~I-~--------~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNSS---LSKL-------PSSIGELVHLRYLDLSDTGI-S--------HLPSGLGNLKKLIYL 623 (889)
T ss_pred CHHHHhhCcceEEEECCCCCc---cCcC-------ChHHhhhhhhhcccccCCCc-c--------ccchHHHHHHhhhee
Confidence 334334567888888887551 1110 111 122677777777776 2 244456666677777
Q ss_pred eCCCCC
Q 016565 295 KLRHCH 300 (387)
Q Consensus 295 dLs~N~ 300 (387)
||..+.
T Consensus 624 nl~~~~ 629 (889)
T KOG4658|consen 624 NLEVTG 629 (889)
T ss_pred cccccc
Confidence 777654
No 107
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=23.20 E-value=44 Score=23.15 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=17.4
Q ss_pred cccCChhhHHHHHhcCCchhhhh
Q 016565 29 VYELPADLFDILLTCLPPLALQK 51 (387)
Q Consensus 29 ~~~l~~~~~~~~~~~lp~~~l~~ 51 (387)
+.+||.+.+..|+++||+..+-.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~ 25 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLR 25 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHH
Confidence 56899999999999999985443
No 108
>cd03745 SOCS_WSB2_SWIP2 SOCS (suppressors of cytokine signaling) box of WSB2/SWiP2-like proteins. This family consists of WSB-2 (SOCS-box-containing WD-40 protein) and SWiP-2 (SOCS box and WD-repeats in Protein). No functional information is available for WSB2 or SWiP-2, but limited information is available for the isoforms WSB-1 and SWiP-1. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=23.12 E-value=1.4e+02 Score=21.21 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=23.0
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHH
Q 016565 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDIL 40 (387)
Q Consensus 4 ~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~ 40 (387)
+|||..||=.+|-++...+ ...-..||..+++.+
T Consensus 3 v~SLQHLCR~~I~~~~~~~---~~~~LPLP~~Lk~yL 36 (39)
T cd03745 3 LPSLRHLCRKALRHFLTTY---QVLALPIPKKMKEFL 36 (39)
T ss_pred cccHHHHHHHHHHHhcccc---ccccCCCcHHHHHHH
Confidence 5999999999999987522 111235667776654
No 109
>KOG3244 consensus Protein involved in ubiquinone biosynthesis [Coenzyme transport and metabolism]
Probab=22.35 E-value=65 Score=31.67 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHHhhhh
Q 016565 105 VDWQQRYWEAHVQGCLDEAAELV 127 (387)
Q Consensus 105 ~~W~~~y~E~hLf~CL~E~qEe~ 127 (387)
..----|||+|+..=|.|.++|-
T Consensus 232 k~lm~vYwE~~~e~dl~~vR~el 254 (267)
T KOG3244|consen 232 KPLMNVYWERHFEKDLEEVRKEL 254 (267)
T ss_pred CcchhhHHHHHHHHHHHHHHHHh
Confidence 34556799999999999877663
No 110
>cd03726 SOCS_ASB7 SOCS (suppressors of cytokine signaling) box of ASB7-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=20.76 E-value=1.8e+02 Score=21.24 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHHHHhccCCC-CCcccccCChhhHHHHH
Q 016565 4 APSLISLAALAVKRELLLGDD-VIPYVYELPADLFDILL 41 (387)
Q Consensus 4 ~p~L~~lc~~~i~~~~~~~~~-~~p~~~~l~~~~~~~~~ 41 (387)
+++|.+||--+|-..+-..-- .++.+ .||+.+.+.++
T Consensus 3 P~sL~~LCRl~IR~~lG~~~l~~I~~L-~lP~~Lk~yLl 40 (45)
T cd03726 3 PRTLQDLCRIKIRHCIGLQNLKLLDEL-PIAKVMKDYLK 40 (45)
T ss_pred CcCHHHHHHHHHHHHHhhhhcccCccC-CCCHHHHHHHh
Confidence 369999999999998875211 33333 37777777665
No 111
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=20.76 E-value=62 Score=37.28 Aligned_cols=42 Identities=26% Similarity=0.180 Sum_probs=23.5
Q ss_pred HhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 285 L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
+..-|.|+.||||+|.=+.+-.+.+. .|- +|+.|+|+...|.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~-~Li----~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIG-ELV----HLRYLDLSDTGIS 608 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHh-hhh----hhhcccccCCCcc
Confidence 66677788888876543322222222 221 5666677766665
No 112
>cd03743 SOCS_SSB4 SOCS (suppressors of cytokine signaling) box of SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF). SSB4, like SSB2 and SSB1, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=20.75 E-value=1.6e+02 Score=21.18 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHHHhccCCC-CCcccccCChhhHHHH
Q 016565 3 KAPSLISLAALAVKRELLLGDD-VIPYVYELPADLFDIL 40 (387)
Q Consensus 3 ~~p~L~~lc~~~i~~~~~~~~~-~~p~~~~l~~~~~~~~ 40 (387)
++++|.++|--+|-..+-.+-- .|.. ..||+.+.+.+
T Consensus 2 ~P~sL~~lCRl~IR~~lg~~~l~~I~~-L~LP~~Lk~yL 39 (42)
T cd03743 2 EPLPLMDLCRRSARQALGRHRLHHIQS-LPLPQTLKNYL 39 (42)
T ss_pred CCcCHHHHHHHHHHHHHhHhhhccCcc-CCCCHHHHHHH
Confidence 4589999999999998875211 2322 34677666654
No 113
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.17 E-value=1.1e+02 Score=33.62 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=57.8
Q ss_pred HHhhCCCCCcEEEcccC--CCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceee-
Q 016565 219 LLIQNSETLASLEFLHC--KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLK- 295 (387)
Q Consensus 219 ~L~~n~~~Lt~L~L~~n--~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~Ld- 295 (387)
.|....++|+.|+|++| .++ ..-|.=+- ..+.|++|.|.++.+|+. -.....++..+...-|.|..||
T Consensus 238 slsq~apklk~L~LS~N~~~~~-----~~~el~K~---k~l~Leel~l~GNPlc~t-f~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 238 SLSQIAPKLKTLDLSHNHSKIS-----SESELDKL---KGLPLEELVLEGNPLCTT-FSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred HHHHhcchhheeecccchhhhc-----chhhhhhh---cCCCHHHeeecCCccccc-hhhhHHHHHHHHHhcchheeecC
Confidence 46667789999999999 332 11111111 233899999999999874 3333456666666778888886
Q ss_pred ------------------CCCCCCCchhHHHHHHHh
Q 016565 296 ------------------LRHCHLDRDFGRMVFSSL 313 (387)
Q Consensus 296 ------------------Ls~N~L~D~GvklLC~~L 313 (387)
+-.|..++++++.|....
T Consensus 309 ~ev~~~~~d~~~~~~~~p~k~~ff~~~~l~~LV~~F 344 (585)
T KOG3763|consen 309 VEVQPEVIDINASETPMPCKQNFFGSEELKQLVLQF 344 (585)
T ss_pred cccCccccccccccCCcchhhcccCchHHHHHHHHH
Confidence 224677888888887666
Done!