Query 016565
Match_columns 387
No_of_seqs 143 out of 190
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3un9_A NLR family member X1; l 99.9 2E-23 6.7E-28 207.2 14.4 214 114-380 52-266 (372)
2 1pgv_A TMD-1, tropomodulin TMD 99.8 1E-18 3.4E-23 161.5 10.8 148 214-380 31-182 (197)
3 1io0_A Tropomodulin; LRR prote 99.8 1.8E-18 6.2E-23 155.0 11.6 148 213-379 25-175 (185)
4 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-16 5E-21 157.0 13.3 168 196-378 255-423 (461)
5 3un9_A NLR family member X1; l 99.7 1.7E-16 5.9E-21 157.3 11.7 161 199-378 74-236 (372)
6 3goz_A Leucine-rich repeat-con 99.7 3.1E-16 1E-20 152.4 12.3 165 199-376 82-248 (362)
7 1z7x_W Ribonuclease inhibitor; 99.7 5.5E-16 1.9E-20 152.8 13.8 166 198-378 29-195 (461)
8 1pgv_A TMD-1, tropomodulin TMD 99.6 8.8E-16 3E-20 141.8 8.3 122 242-378 29-154 (197)
9 3goz_A Leucine-rich repeat-con 99.6 5.7E-15 1.9E-19 143.5 13.5 166 198-377 110-280 (362)
10 2ca6_A RAN GTPase-activating p 99.5 3.2E-14 1.1E-18 138.6 12.3 163 198-377 123-298 (386)
11 1io0_A Tropomodulin; LRR prote 99.5 4E-14 1.4E-18 126.7 10.5 123 240-378 23-148 (185)
12 2ca6_A RAN GTPase-activating p 99.5 6.1E-14 2.1E-18 136.6 11.7 164 198-377 160-329 (386)
13 2ast_B S-phase kinase-associat 99.1 4.7E-09 1.6E-13 99.2 18.5 22 26-47 6-27 (336)
14 2ra8_A Uncharacterized protein 99.0 2.8E-10 9.4E-15 113.0 6.0 139 224-380 192-334 (362)
15 2ast_B S-phase kinase-associat 98.8 2E-08 6.8E-13 94.8 10.1 146 198-375 94-245 (336)
16 3ogk_B Coronatine-insensitive 98.8 9.2E-09 3.1E-13 104.4 8.2 76 288-377 462-537 (592)
17 2p1m_B Transport inhibitor res 98.7 2.9E-08 9.7E-13 100.6 10.1 79 288-381 455-533 (594)
18 2ra8_A Uncharacterized protein 98.7 1.1E-08 3.7E-13 101.5 5.5 134 215-377 163-303 (362)
19 2p1m_B Transport inhibitor res 98.6 3.2E-07 1.1E-11 92.9 13.7 127 226-377 373-505 (594)
20 4ezg_A Putative uncharacterize 98.6 1.5E-07 5.2E-12 83.4 8.6 109 223-367 86-195 (197)
21 4glp_A Monocyte differentiatio 98.5 1.1E-07 3.9E-12 89.9 7.4 96 223-331 167-264 (310)
22 2je0_A Acidic leucine-rich nuc 98.4 3E-07 1E-11 77.5 6.7 113 225-369 17-129 (149)
23 3ogk_B Coronatine-insensitive 98.4 1.5E-06 5.2E-11 88.1 11.6 78 285-376 432-511 (592)
24 2ell_A Acidic leucine-rich nuc 98.4 3.3E-07 1.1E-11 78.7 5.7 19 285-303 67-85 (168)
25 4ezg_A Putative uncharacterize 98.3 1.2E-06 4E-11 77.6 8.7 110 223-368 64-174 (197)
26 1wwl_A Monocyte differentiatio 98.3 1.9E-07 6.5E-12 88.5 2.9 95 223-331 171-266 (312)
27 3v47_A TOLL-like receptor 5B a 98.2 8.3E-07 2.8E-11 87.2 5.7 25 225-249 212-236 (455)
28 4glp_A Monocyte differentiatio 98.2 8.6E-07 2.9E-11 83.8 4.8 146 197-368 64-212 (310)
29 1h6t_A Internalin B; cell adhe 98.2 5.2E-06 1.8E-10 78.4 9.8 109 223-371 110-218 (291)
30 2ell_A Acidic leucine-rich nuc 98.2 1.6E-06 5.4E-11 74.4 5.7 115 223-367 47-161 (168)
31 4fmz_A Internalin; leucine ric 98.2 5.5E-06 1.9E-10 78.6 9.7 15 224-238 220-234 (347)
32 1a9n_A U2A', U2A'; complex (nu 98.2 1.3E-06 4.5E-11 76.0 4.9 113 225-367 42-154 (176)
33 1wwl_A Monocyte differentiatio 98.2 3.2E-06 1.1E-10 80.1 7.9 116 225-366 149-266 (312)
34 2je0_A Acidic leucine-rich nuc 98.2 2.8E-06 9.5E-11 71.5 6.6 110 223-362 40-149 (149)
35 1h6t_A Internalin B; cell adhe 98.2 6.1E-06 2.1E-10 77.9 9.5 124 198-368 69-193 (291)
36 1xeu_A Internalin C; cellular 98.1 4.3E-06 1.5E-10 77.9 7.9 126 198-371 64-190 (263)
37 3m19_A Variable lymphocyte rec 98.1 2.2E-06 7.6E-11 78.5 5.6 114 223-368 81-194 (251)
38 1h6u_A Internalin H; cell adhe 98.1 9.1E-06 3.1E-10 77.2 9.5 107 223-369 105-211 (308)
39 2v70_A SLIT-2, SLIT homolog 2 98.1 1.7E-06 5.7E-11 78.5 4.1 112 223-366 55-166 (220)
40 3e6j_A Variable lymphocyte rec 98.1 2.4E-06 8.1E-11 77.9 4.8 132 198-367 41-173 (229)
41 3v47_A TOLL-like receptor 5B a 98.1 4.3E-06 1.5E-10 82.1 6.7 28 286-313 209-236 (455)
42 1h6u_A Internalin H; cell adhe 98.1 1.3E-05 4.4E-10 76.1 9.6 109 222-370 126-234 (308)
43 4fmz_A Internalin; leucine ric 98.1 1.2E-05 4.1E-10 76.2 9.3 82 223-331 197-278 (347)
44 2wfh_A SLIT homolog 2 protein 98.1 2.5E-06 8.5E-11 76.1 4.3 118 225-375 31-149 (193)
45 2v9t_B SLIT homolog 2 protein 98.0 2.6E-06 8.7E-11 77.3 4.3 112 223-366 54-165 (220)
46 1ozn_A Reticulon 4 receptor; N 98.0 3.2E-06 1.1E-10 78.4 4.9 13 354-366 226-238 (285)
47 4g8a_A TOLL-like receptor 4; l 98.0 2.5E-06 8.6E-11 86.2 4.5 114 223-367 74-187 (635)
48 3rfs_A Internalin B, repeat mo 98.0 4.6E-06 1.6E-10 77.5 5.8 114 223-368 83-196 (272)
49 1w8a_A SLIT protein; signaling 98.0 2.5E-06 8.7E-11 75.6 3.7 110 226-366 30-139 (192)
50 2o6s_A Variable lymphocyte rec 98.0 4.2E-06 1.4E-10 74.2 5.0 133 198-367 29-162 (208)
51 2v9t_B SLIT homolog 2 protein 98.0 3.9E-06 1.3E-10 76.1 4.8 113 225-369 32-144 (220)
52 2xot_A Amphoterin-induced prot 98.0 4.3E-06 1.5E-10 81.1 5.3 120 223-371 62-181 (361)
53 3e6j_A Variable lymphocyte rec 98.0 7.5E-06 2.6E-10 74.5 6.4 110 225-367 40-149 (229)
54 3m19_A Variable lymphocyte rec 98.0 7.6E-06 2.6E-10 74.9 6.4 135 198-369 36-171 (251)
55 2o6s_A Variable lymphocyte rec 98.0 4.7E-06 1.6E-10 73.9 4.8 15 288-302 75-89 (208)
56 1xku_A Decorin; proteoglycan, 98.0 3.4E-06 1.2E-10 79.9 4.0 21 354-374 264-284 (330)
57 1m9s_A Internalin B; cell inva 98.0 6.7E-06 2.3E-10 86.5 6.6 109 223-371 107-215 (605)
58 1m9s_A Internalin B; cell inva 98.0 2E-05 6.7E-10 83.0 10.0 107 222-368 84-190 (605)
59 3rfs_A Internalin B, repeat mo 98.0 1.1E-05 3.7E-10 74.9 7.2 152 175-366 64-218 (272)
60 2o6q_A Variable lymphocyte rec 98.0 4.6E-06 1.6E-10 77.2 4.6 86 258-367 134-219 (270)
61 2o6r_A Variable lymphocyte rec 98.0 6.6E-06 2.3E-10 71.2 5.2 112 225-368 28-139 (177)
62 2v70_A SLIT-2, SLIT homolog 2 98.0 7.2E-06 2.5E-10 74.3 5.5 113 225-368 32-144 (220)
63 2z62_A TOLL-like receptor 4, v 97.9 8.2E-06 2.8E-10 75.3 5.8 117 223-367 74-191 (276)
64 1p9a_G Platelet glycoprotein I 97.9 1.4E-05 4.8E-10 75.5 7.3 13 354-366 196-208 (290)
65 1p9a_G Platelet glycoprotein I 97.9 4.1E-06 1.4E-10 79.2 3.4 112 223-367 75-186 (290)
66 3e4g_A ATP synthase subunit S, 97.9 6.1E-06 2.1E-10 74.7 4.4 19 225-243 61-79 (176)
67 1xeu_A Internalin C; cellular 97.9 2.2E-05 7.5E-10 73.1 8.2 105 223-368 61-165 (263)
68 2z66_A Variable lymphocyte rec 97.9 6.8E-06 2.3E-10 76.9 4.7 114 223-366 148-261 (306)
69 2z7x_B TOLL-like receptor 1, v 97.9 5.2E-06 1.8E-10 83.3 4.0 40 288-331 89-128 (520)
70 2o6q_A Variable lymphocyte rec 97.9 1.7E-05 5.8E-10 73.4 7.2 117 222-370 82-198 (270)
71 1ozn_A Reticulon 4 receptor; N 97.9 1.1E-05 3.6E-10 74.9 5.7 119 223-373 103-221 (285)
72 2z62_A TOLL-like receptor 4, v 97.9 2.8E-06 9.6E-11 78.5 1.8 116 223-369 50-165 (276)
73 3o6n_A APL1; leucine-rich repe 97.9 4.2E-06 1.4E-10 81.2 3.0 119 223-378 246-364 (390)
74 2xot_A Amphoterin-induced prot 97.9 8.2E-06 2.8E-10 79.1 4.9 114 225-369 39-152 (361)
75 4g8a_A TOLL-like receptor 4; l 97.9 9.9E-06 3.4E-10 81.8 5.5 174 157-367 38-215 (635)
76 2z7x_B TOLL-like receptor 1, v 97.9 1.8E-05 6.3E-10 79.3 7.2 13 354-366 469-481 (520)
77 2z66_A Variable lymphocyte rec 97.9 7.7E-06 2.6E-10 76.5 4.0 118 223-371 124-241 (306)
78 3o53_A Protein LRIM1, AGAP0063 97.8 6.2E-06 2.1E-10 78.2 3.3 107 225-366 144-250 (317)
79 3cvr_A Invasion plasmid antige 97.8 9.6E-06 3.3E-10 85.0 4.7 114 224-375 139-252 (571)
80 3o53_A Protein LRIM1, AGAP0063 97.8 1.1E-05 3.9E-10 76.4 4.5 37 319-367 192-228 (317)
81 3oja_A Leucine-rich immune mol 97.8 5E-06 1.7E-10 84.5 2.0 60 258-332 145-205 (487)
82 1a9n_A U2A', U2A'; complex (nu 97.8 6.4E-06 2.2E-10 71.6 2.3 111 223-368 17-128 (176)
83 2z80_A TOLL-like receptor 2, v 97.8 9.7E-05 3.3E-09 70.7 10.5 121 223-368 196-316 (353)
84 2ft3_A Biglycan; proteoglycan, 97.8 4.9E-06 1.7E-10 79.0 1.1 21 354-374 265-285 (332)
85 2ft3_A Biglycan; proteoglycan, 97.8 1.2E-05 4.2E-10 76.3 3.8 111 223-367 76-186 (332)
86 3o6n_A APL1; leucine-rich repe 97.8 9.2E-06 3.2E-10 78.7 2.8 89 223-332 91-179 (390)
87 3vq2_A TLR4, TOLL-like recepto 97.7 1.3E-05 4.4E-10 81.8 3.9 90 223-332 78-167 (606)
88 2id5_A Lingo-1, leucine rich r 97.7 1E-05 3.6E-10 80.3 3.0 61 258-331 225-285 (477)
89 3g39_A Variable lymphocyte rec 97.7 2.3E-05 7.9E-10 68.3 4.8 106 227-367 11-116 (170)
90 1dce_A Protein (RAB geranylger 97.7 3.8E-05 1.3E-09 80.0 7.1 106 226-367 442-547 (567)
91 3zyj_A Leucine-rich repeat-con 97.7 3.3E-05 1.1E-09 76.4 6.2 85 258-366 208-292 (440)
92 2z81_A CD282 antigen, TOLL-lik 97.7 5.2E-05 1.8E-09 76.2 7.6 123 223-366 332-464 (549)
93 1xku_A Decorin; proteoglycan, 97.7 2.4E-05 8.1E-10 74.1 4.8 113 222-367 73-185 (330)
94 2z81_A CD282 antigen, TOLL-lik 97.7 2.1E-05 7.3E-10 79.0 4.6 116 223-368 48-163 (549)
95 3t6q_A CD180 antigen; protein- 97.7 4.7E-06 1.6E-10 85.0 -0.2 18 353-370 500-517 (606)
96 3zyi_A Leucine-rich repeat-con 97.7 2.3E-05 7.8E-10 77.9 4.7 110 223-366 194-303 (452)
97 1o6v_A Internalin A; bacterial 97.7 0.0001 3.4E-09 73.5 9.4 64 285-368 305-368 (466)
98 4fcg_A Uncharacterized protein 97.7 1.9E-05 6.4E-10 75.8 3.9 66 285-366 225-290 (328)
99 3a79_B TLR6, VLRB.59, TOLL-lik 97.7 1.7E-05 5.9E-10 80.8 3.8 40 288-331 120-159 (562)
100 3oja_A Leucine-rich immune mol 97.7 1.4E-05 4.8E-10 81.1 3.1 113 223-370 142-254 (487)
101 4b8c_D Glucose-repressible alc 97.7 3.5E-05 1.2E-09 82.5 6.1 114 223-372 222-335 (727)
102 3vq2_A TLR4, TOLL-like recepto 97.7 1.7E-05 5.8E-10 80.9 3.5 89 223-331 422-510 (606)
103 2id5_A Lingo-1, leucine rich r 97.7 7.8E-06 2.7E-10 81.2 0.9 113 223-367 78-190 (477)
104 3e4g_A ATP synthase subunit S, 97.7 2.2E-05 7.6E-10 71.0 3.7 92 258-369 62-156 (176)
105 2z80_A TOLL-like receptor 2, v 97.7 2.6E-05 9E-10 74.6 4.3 115 223-368 74-189 (353)
106 4eco_A Uncharacterized protein 97.7 0.00011 3.7E-09 76.9 9.3 123 222-366 203-343 (636)
107 1ds9_A Outer arm dynein; leuci 97.6 4.3E-06 1.5E-10 74.1 -1.4 107 225-367 48-154 (198)
108 4fcg_A Uncharacterized protein 97.6 2.5E-05 8.7E-10 74.9 3.8 116 222-367 147-267 (328)
109 2z63_A TOLL-like receptor 4, v 97.6 2.7E-05 9.2E-10 78.3 4.1 90 223-332 74-163 (570)
110 2r9u_A Variable lymphocyte rec 97.6 7.7E-05 2.6E-09 65.4 6.4 106 228-368 15-120 (174)
111 3t6q_A CD180 antigen; protein- 97.6 9.7E-06 3.3E-10 82.7 0.7 92 223-332 423-514 (606)
112 4ecn_A Leucine-rich repeat pro 97.6 0.00013 4.6E-09 80.1 9.7 100 223-331 446-561 (876)
113 1o6v_A Internalin A; bacterial 97.6 0.00015 5.1E-09 72.2 9.3 82 223-331 219-300 (466)
114 1ogq_A PGIP-2, polygalacturona 97.6 9.4E-06 3.2E-10 77.1 0.5 15 353-367 244-258 (313)
115 3oja_B Anopheles plasmodium-re 97.6 2E-05 6.7E-10 81.5 2.8 89 223-332 97-185 (597)
116 1ogq_A PGIP-2, polygalacturona 97.6 9.8E-06 3.4E-10 77.0 0.3 65 285-366 217-281 (313)
117 3zyj_A Leucine-rich repeat-con 97.6 8.2E-05 2.8E-09 73.6 6.9 87 258-370 186-272 (440)
118 2wfh_A SLIT homolog 2 protein 97.6 3.8E-05 1.3E-09 68.4 3.9 85 258-367 32-116 (193)
119 2z63_A TOLL-like receptor 4, v 97.6 3E-05 1E-09 78.0 3.3 87 258-367 446-532 (570)
120 3a79_B TLR6, VLRB.59, TOLL-lik 97.5 0.00038 1.3E-08 70.9 11.1 42 223-269 247-288 (562)
121 3zyi_A Leucine-rich repeat-con 97.5 0.00014 4.8E-09 72.2 7.4 86 258-369 197-282 (452)
122 1w8a_A SLIT protein; signaling 97.5 7.1E-05 2.4E-09 66.2 4.7 106 228-367 11-116 (192)
123 3oja_B Anopheles plasmodium-re 97.5 9.4E-05 3.2E-09 76.4 5.9 115 223-374 252-366 (597)
124 1ziw_A TOLL-like receptor 3; i 97.5 4.5E-05 1.5E-09 79.1 3.5 116 223-370 71-188 (680)
125 3j0a_A TOLL-like receptor 5; m 97.5 4.7E-05 1.6E-09 82.0 3.8 120 222-368 70-189 (844)
126 4eco_A Uncharacterized protein 97.4 0.0002 6.8E-09 74.8 7.3 37 258-303 489-527 (636)
127 4ecn_A Leucine-rich repeat pro 97.4 0.00021 7.2E-09 78.5 7.5 88 223-327 695-785 (876)
128 3rgz_A Protein brassinosteroid 97.4 0.00012 4E-09 78.1 4.9 42 285-331 462-503 (768)
129 3bz5_A Internalin-J, INLJ; leu 97.3 0.00033 1.1E-08 70.6 7.7 101 223-367 62-163 (457)
130 3g06_A SSPH2 (leucine-rich rep 97.3 0.00041 1.4E-08 73.3 8.7 115 225-375 181-306 (622)
131 2o6r_A Variable lymphocyte rec 97.3 0.00011 3.7E-09 63.5 3.3 106 227-367 9-114 (177)
132 3rgz_A Protein brassinosteroid 97.3 6.5E-05 2.2E-09 80.0 2.0 112 223-366 440-551 (768)
133 3j0a_A TOLL-like receptor 5; m 97.3 5E-05 1.7E-09 81.8 0.7 93 226-331 205-327 (844)
134 3bz5_A Internalin-J, INLJ; leu 97.3 0.00057 2E-08 68.8 8.3 15 353-367 233-247 (457)
135 1ziw_A TOLL-like receptor 3; i 97.2 0.00032 1.1E-08 72.7 6.4 16 353-368 272-287 (680)
136 3cvr_A Invasion plasmid antige 97.2 0.00014 4.9E-09 76.1 3.8 101 226-367 121-221 (571)
137 1dce_A Protein (RAB geranylger 97.1 0.00037 1.3E-08 72.5 5.4 107 222-360 460-567 (567)
138 1jl5_A Outer protein YOPM; leu 97.1 0.00052 1.8E-08 69.0 6.2 77 225-332 111-187 (454)
139 3g06_A SSPH2 (leucine-rich rep 97.0 0.00087 3E-08 70.8 7.3 93 198-332 82-175 (622)
140 4b8c_D Glucose-repressible alc 96.9 0.00034 1.2E-08 74.9 3.3 84 257-367 224-307 (727)
141 1jl5_A Outer protein YOPM; leu 96.9 0.00097 3.3E-08 67.1 6.1 78 223-331 151-228 (454)
142 2xwt_C Thyrotropin receptor; s 96.9 0.00074 2.5E-08 60.9 4.7 111 223-367 103-219 (239)
143 1ds9_A Outer arm dynein; leuci 96.8 1.4E-05 4.7E-10 70.8 -7.1 113 225-370 18-132 (198)
144 3rw6_A Nuclear RNA export fact 96.8 0.0021 7.3E-08 61.3 7.5 80 287-381 168-253 (267)
145 3g39_A Variable lymphocyte rec 96.8 0.0013 4.6E-08 56.9 5.5 84 257-367 9-92 (170)
146 2ifg_A High affinity nerve gro 96.8 0.00059 2E-08 64.9 3.0 16 223-238 29-45 (347)
147 2xwt_C Thyrotropin receptor; s 96.8 0.00058 2E-08 61.6 2.8 110 223-367 78-194 (239)
148 2ifg_A High affinity nerve gro 96.7 0.0011 3.7E-08 63.1 4.2 93 258-375 32-126 (347)
149 2r9u_A Variable lymphocyte rec 96.4 0.002 6.8E-08 56.3 3.9 83 258-367 13-95 (174)
150 3rw6_A Nuclear RNA export fact 96.1 0.006 2.1E-07 58.2 5.4 66 285-359 192-257 (267)
151 4ay9_X Follicle-stimulating ho 94.8 0.0018 6.2E-08 62.1 -3.0 15 353-367 202-216 (350)
152 2e31_A FBS1, F-box only protei 91.7 0.13 4.3E-06 50.1 4.2 70 27-117 49-124 (297)
153 4ay9_X Follicle-stimulating ho 91.2 0.062 2.1E-06 51.3 1.4 87 225-332 30-118 (350)
154 3sb4_A Hypothetical leucine ri 90.0 0.18 6.3E-06 47.5 3.5 90 199-301 27-136 (329)
155 3rfe_A Platelet glycoprotein I 82.2 1.3 4.4E-05 37.0 4.3 37 319-366 32-68 (130)
156 4hfx_A Transcription elongatio 81.6 0.6 2.1E-05 38.3 1.9 59 33-113 14-73 (97)
157 2ovr_B FBW7, F-BOX/WD repeat p 80.2 2.2 7.7E-05 40.7 5.7 73 27-118 17-100 (445)
158 3rfe_A Platelet glycoprotein I 66.0 2.3 8E-05 35.4 1.7 38 289-331 31-68 (130)
159 3sb4_A Hypothetical leucine ri 65.5 2.3 7.8E-05 39.9 1.7 107 225-367 202-311 (329)
160 1lm8_V VHL, VON hippel-lindau 49.5 13 0.00046 32.9 3.8 42 2-46 100-141 (160)
161 2jz3_A Suppressor of cytokine 42.3 36 0.0012 23.1 4.2 35 4-42 1-35 (40)
162 1fs1_A SKP2 F-BOX, cyclin A/CD 35.1 24 0.00082 24.2 2.5 24 27-50 7-30 (53)
163 4fdw_A Leucine rich hypothetic 29.5 14 0.00049 36.1 0.8 96 258-367 249-359 (401)
164 1p22_A F-BOX/WD-repeat protein 29.2 19 0.00064 34.2 1.5 25 28-52 10-38 (435)
165 3ukx_C Bimax2 peptide; arm rep 21.6 32 0.0011 21.4 1.0 11 72-82 5-15 (28)
No 1
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=207.22 Aligned_cols=214 Identities=15% Similarity=0.101 Sum_probs=168.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhccccccccchhhhhhhhhhhhhhhhhcccccccchhcccCccceEEeeecccchhhhhhh
Q 016565 114 AHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQL 193 (387)
Q Consensus 114 ~hLf~CL~E~qEe~fv~~~m~~i~ei~i~~~I~~~~d~~~~~~Cl~~~l~~Ls~~c~~~~~~vr~L~L~~~L~~~~~~~~ 193 (387)
-.+|+||+|++++.|++.++..+..+.+...-.+..+...-+..+. .
T Consensus 52 lnl~~cl~e~~~~~l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-----------~---------------------- 98 (372)
T 3un9_A 52 LDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLG-----------S---------------------- 98 (372)
T ss_dssp HHHHHHHHHHHTHHHHHHHHTTCCEEECTTSCCCHHHHHHHHHHHS-----------S----------------------
T ss_pred HHHHHHHHHhcCHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHHHh-----------h----------------------
Confidence 4679999999999999999999988877532222221110000000 0
Q ss_pred cccccccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccC
Q 016565 194 LRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 272 (387)
Q Consensus 194 ~~~C~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~ 272 (387)
....+++|.++++ +++.+...++..|. +|++|+|++|.+++.++..++++|+++.+ +|+.|.|..|.+ .
T Consensus 99 -~~~~L~~L~Ls~n~l~~~~~~~l~~~L~----~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~---~L~~L~Ls~n~l-~- 168 (372)
T 3un9_A 99 -GRHALDEVNLASCQLDPAGLRTLLPVFL----RARKLGLQLNSLGPEACKDLRDLLLHDQC---QITTLRLSNNPL-T- 168 (372)
T ss_dssp -CSSCEEEEECTTCCCCHHHHHHTHHHHH----TEEEEECCSSCCCHHHHHHHHHHHHSTTC---CCCEEECCSSCC-H-
T ss_pred -CCCCceEEEecCCCCCHHHHHHHHHHHH----hccHhhcCCCCCCHHHHHHHHHHHHhcCC---ccceeeCCCCCC-C-
Confidence 0124555555433 66667777777776 69999999999999999999999999888 999999999998 4
Q ss_pred CCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCC
Q 016565 273 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 352 (387)
Q Consensus 273 ~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~ 352 (387)
......|+.+|..+++|++|||++|.|+|.|++.|+++|.++. +|++|+|++|.|++ .++.+++.+|..+
T Consensus 169 --~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~----~g~~~l~~~L~~~--- 238 (372)
T 3un9_A 169 --AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGD----TAALALARAAREH--- 238 (372)
T ss_dssp --HHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCH----HHHHHHHHHHHHC---
T ss_pred --hHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCH----HHHHHHHHHHHhC---
Confidence 2344578999999999999999999999999999999999887 89999999999994 3457788999888
Q ss_pred CCCCeeeCCCCCCCChHHHHHHhhhccC
Q 016565 353 QSLRLLNLRYDMIGNAVSLLLCKLFFPT 380 (387)
Q Consensus 353 qsLt~L~L~~N~LgD~GVk~LCeaL~~~ 380 (387)
++|++|+|++|.|+|.|++.|+++..++
T Consensus 239 ~~L~~L~Ls~N~i~~~g~~~L~~~~~~~ 266 (372)
T 3un9_A 239 PSLELLHLYFNELSSEGRQVLRDLGGAA 266 (372)
T ss_dssp SSCCEEECTTSSCCHHHHHHHHHCC---
T ss_pred CCCCEEeccCCCCCHHHHHHHHHHhcCC
Confidence 4699999999999999999999987654
No 2
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.77 E-value=1e-18 Score=161.53 Aligned_cols=148 Identities=13% Similarity=0.229 Sum_probs=124.4
Q ss_pred HHHHHHHhhCCCCCcEEEcccC-CCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCc
Q 016565 214 QALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLC 292 (387)
Q Consensus 214 ~~L~~~L~~n~~~Lt~L~L~~n-~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~ 292 (387)
+.+..++. ++++|++|+|++| .+++.|++.+|++|+ +++ .|+.|.|..+.+ .+. .+..|+.+|..|++|+
T Consensus 31 ~~l~~ll~-~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~---~L~~L~L~~n~i-gd~---ga~alA~aL~~N~tL~ 101 (197)
T 1pgv_A 31 SCINRLRE-DDTDLKEVNINNMKRVSKERIRSLIEAAC-NSK---HIEKFSLANTAI-SDS---EARGLIELIETSPSLR 101 (197)
T ss_dssp HHHHHHHT-TCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCS---CCCEEECTTSCC-BHH---HHTTHHHHHHHCSSCC
T ss_pred HHHHHHHh-cCCCccEEECCCCCCCCHHHHHHHHHHHh-hCC---CcCEEEccCCCC-ChH---HHHHHHHHHhcCCccC
Confidence 45666666 6689999999996 999999999999998 567 899999999998 533 3347999999999999
Q ss_pred eeeCCCCCCCchhHHHHHHHhccCCCccceEeccCc---ccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChH
Q 016565 293 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN---SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAV 369 (387)
Q Consensus 293 ~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n---~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~G 369 (387)
+|+|+.|.|+|.|++.|+++|.+..+ |++|+|++| .++ ..+.++++.+|..| ++|+.|+|+.|.+|+
T Consensus 102 ~L~L~~N~Ig~~Ga~ala~aL~~N~t-L~~L~L~n~~~~~ig----~~g~~~ia~aL~~N---~tL~~L~l~~~~~g~-- 171 (197)
T 1pgv_A 102 VLNVESNFLTPELLARLLRSTLVTQS-IVEFKADNQRQSVLG----NQVEMDMMMAIEEN---ESLLRVGISFASMEA-- 171 (197)
T ss_dssp EEECCSSBCCHHHHHHHHHHTTTTCC-CSEEECCCCSSCCCC----HHHHHHHHHHHHHC---SSCCEEECCCCCHHH--
T ss_pred eEecCCCcCCHHHHHHHHHHHhhCCc-eeEEECCCCcCcCcC----HHHHHHHHHHHHhC---CCcCeEeccCCCccH--
Confidence 99999999999999999999999884 999999976 455 24457899999999 479999999887663
Q ss_pred HHHHHhhhccC
Q 016565 370 SLLLCKLFFPT 380 (387)
Q Consensus 370 Vk~LCeaL~~~ 380 (387)
-..+.++|.-+
T Consensus 172 ~~~ia~aL~~N 182 (197)
T 1pgv_A 172 RHRVSEALERN 182 (197)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 24577887543
No 3
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.76 E-value=1.8e-18 Score=155.02 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=127.2
Q ss_pred HHHHHHHHhhCCCCCcEEEcccC-CCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCC
Q 016565 213 VQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 291 (387)
Q Consensus 213 ~~~L~~~L~~n~~~Lt~L~L~~n-~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL 291 (387)
.+.+..++. +.++|++|+|++| .+++.|+..++++|++. . +|++|.|..+.+ . ......|+.+|..+++|
T Consensus 25 ~~~l~~~l~-~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~---~L~~L~Ls~n~i-~---~~g~~~l~~~L~~n~~L 95 (185)
T 1io0_A 25 EETLKRIQN-NDPDLEEVNLNNIMNIPVPTLKACAEALKTN-T---YVKKFSIVGTRS-N---DPVAFALAEMLKVNNTL 95 (185)
T ss_dssp HHHHHHHHT-TCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-C---SCCEEECTTSCC-C---HHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHh-cCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-C---CcCEEECcCCCC-C---hHHHHHHHHHHHhCCCc
Confidence 456667777 5589999999999 99999999999999873 3 699999999998 5 34445799999999999
Q ss_pred ceeeCCCCCCCchhHHHHHHHhccCCCccceEec--cCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChH
Q 016565 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL--SGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAV 369 (387)
Q Consensus 292 ~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L--~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~G 369 (387)
++|||++|.++|.|+..|+++|.... +|++|+| +.|.|+. .+...++.+|..| ++|++|+|+.|.+++.|
T Consensus 96 ~~L~L~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~~~~N~i~~----~g~~~l~~~L~~n---~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 96 KSLNVESNFISGSGILALVEALQSNT-SLIELRIDNQSQPLGN----NVEMEIANMLEKN---TTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp CEEECCSSCCCHHHHHHHHHGGGGCS-SCCEEECCCCSSCCCH----HHHHHHHHHHHHC---SSCCEEECCCSSHHHHH
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCC-CceEEEecCCCCCCCH----HHHHHHHHHHHhC---CCcCEEeccCCCCChHH
Confidence 99999999999999999999998655 7999999 8899993 3347789999988 57999999999999998
Q ss_pred HHHHHhhhcc
Q 016565 370 SLLLCKLFFP 379 (387)
Q Consensus 370 Vk~LCeaL~~ 379 (387)
+ +.++|.-
T Consensus 168 ~--i~~~L~~ 175 (185)
T 1io0_A 168 R--ASNAMMN 175 (185)
T ss_dssp H--HHHHHHH
T ss_pred H--HHHHHHh
Confidence 5 6777653
No 4
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=1.5e-16 Score=156.98 Aligned_cols=168 Identities=24% Similarity=0.268 Sum_probs=146.5
Q ss_pred cccccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCC
Q 016565 196 ESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (387)
Q Consensus 196 ~C~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~ 274 (387)
...+++|.++.. +++.+...+..++.. .++|++|+|++|.+++.++..+++.+.++.+ +|++|.|..|.+..
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~---~L~~L~L~~n~l~~--- 327 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGC---QLESLWVKSCSFTA--- 327 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTC---CCCEEECTTSCCBG---
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCc---cceeeEcCCCCCch---
Confidence 356888877744 788888888888874 4799999999999999999999999999988 99999999999843
Q ss_pred cchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCC
Q 016565 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (387)
Q Consensus 275 ~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qs 354 (387)
..+..++..+..+++|++|||++|.+++.|+..+++++..+..+|++|+|++|.|++ .++..++.++..+ ++
T Consensus 328 -~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~----~~~~~l~~~l~~~---~~ 399 (461)
T 1z7x_W 328 -ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD----SSCSSLAATLLAN---HS 399 (461)
T ss_dssp -GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH----HHHHHHHHHHHHC---CC
T ss_pred -HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh----hhHHHHHHHHHhC---CC
Confidence 233468889999999999999999999999999999999888899999999999994 2335677888877 57
Q ss_pred CCeeeCCCCCCCChHHHHHHhhhc
Q 016565 355 LRLLNLRYDMIGNAVSLLLCKLFF 378 (387)
Q Consensus 355 Lt~L~L~~N~LgD~GVk~LCeaL~ 378 (387)
|++|+|++|.+++.|++.+.+++.
T Consensus 400 L~~L~l~~N~i~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 400 LRELDLSNNCLGDAGILQLVESVR 423 (461)
T ss_dssp CCEEECCSSSCCHHHHHHHHHHHT
T ss_pred ccEEECCCCCCCHHHHHHHHHHhc
Confidence 999999999999999999999874
No 5
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=157.31 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=136.3
Q ss_pred cccccccc-cccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcch
Q 016565 199 LQSLVLRW-IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (387)
Q Consensus 199 Lq~L~l~~-~ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~ 277 (387)
+++|.++. .++...+..++.+|..+.++|++|+|++|.+++.++..++.+|. +|++|.|..|.+.+ ..
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-------~L~~L~Ls~n~l~~----~~ 142 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL-------RARKLGLQLNSLGP----EA 142 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-------TEEEEECCSSCCCH----HH
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-------hccHhhcCCCCCCH----HH
Confidence 55666653 47888999999999877679999999999999999999999986 58999999999833 33
Q ss_pred hHHHHHHHh-cCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCC
Q 016565 278 VVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (387)
Q Consensus 278 ~~~L~s~L~-~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt 356 (387)
...|+.+|. .+++|++|+|++|.|++.|++.|+.+|.... +|++|+|++|.|+. .+...++.+|..+ ++|+
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~----~g~~~L~~~L~~~---~~L~ 214 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGD----EGLELLAAQLDRN---RQLQ 214 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHH----HHHHHHHHHGGGC---SCCC
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCc----HHHHHHHHHHhcC---CCcC
Confidence 446778885 5789999999999999999999999988544 79999999999993 2346688888887 4699
Q ss_pred eeeCCCCCCCChHHHHHHhhhc
Q 016565 357 LLNLRYDMIGNAVSLLLCKLFF 378 (387)
Q Consensus 357 ~L~L~~N~LgD~GVk~LCeaL~ 378 (387)
+|+|++|.|+|.|++.|+++|.
T Consensus 215 ~L~Ls~N~i~~~g~~~l~~~L~ 236 (372)
T 3un9_A 215 ELNVAYNGAGDTAALALARAAR 236 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHH
T ss_pred eEECCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999983
No 6
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=3.1e-16 Score=152.44 Aligned_cols=165 Identities=19% Similarity=0.115 Sum_probs=73.8
Q ss_pred ccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcch
Q 016565 199 LQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (387)
Q Consensus 199 Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~ 277 (387)
|++|.++.. ++......++.++...+++|++|+|++|.+++.++..++++++.-.. +|++|.|..+.+.+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~---~L~~L~Ls~N~l~~----~~ 154 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA---SITSLNLRGNDLGI----KS 154 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCT---TCCEEECTTSCGGG----SC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCC---ceeEEEccCCcCCH----HH
Confidence 444444322 33334444444444222345555555555444444444444443212 34445554444421 11
Q ss_pred hHHHHHHHhcCC-CCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCC
Q 016565 278 VVELVSFLSSGR-SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (387)
Q Consensus 278 ~~~L~s~L~~n~-sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt 356 (387)
...++..+...+ +|++|+|++|.+++.|+..++.+|....++|++|+|++|.|++ .++..++.++..+. ++|+
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~----~~~~~l~~~l~~~~--~~L~ 228 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL----KSYAELAYIFSSIP--NHVV 228 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG----SCHHHHHHHHHHSC--TTCC
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh----hHHHHHHHHHhcCC--CCce
Confidence 123444444433 4555555555555555544444444332345555555555542 22334444554421 2455
Q ss_pred eeeCCCCCCCChHHHHHHhh
Q 016565 357 LLNLRYDMIGNAVSLLLCKL 376 (387)
Q Consensus 357 ~L~L~~N~LgD~GVk~LCea 376 (387)
+|+|++|.|++.|++.+...
T Consensus 229 ~L~Ls~N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 229 SLNLCLNCLHGPSLENLKLL 248 (362)
T ss_dssp EEECCSSCCCCCCHHHHHHT
T ss_pred EEECcCCCCCcHHHHHHHHH
Confidence 66666666666555555543
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=5.5e-16 Score=152.84 Aligned_cols=166 Identities=20% Similarity=0.144 Sum_probs=141.2
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~ 276 (387)
.+++|.++.+ +++.+++.+..++. +.++|++|+|++|.+++.++..+++.+.++.| +|++|.|..|.+.. .
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~---~L~~L~L~~n~i~~----~ 100 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQTPSC---KIQKLSLQNCCLTG----A 100 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC---CCCEEECTTSCCBG----G
T ss_pred CccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC---ceeEEEccCCCCCH----H
Confidence 4677777644 77788888888888 55899999999999999999999999999988 99999999999843 2
Q ss_pred hhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCC
Q 016565 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (387)
Q Consensus 277 ~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt 356 (387)
.+..+...+...++|++|||++|.+++.|++.++.++..+.++|++|+|++|.|++ .+...++.++..+ ++|+
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~----~~~~~l~~~l~~~---~~L~ 173 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA----ASCEPLASVLRAK---PDFK 173 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG----GGHHHHHHHHHHC---TTCC
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH----HHHHHHHHHHhhC---CCCC
Confidence 23468889999999999999999999999999999999999999999999999994 3335567777766 4688
Q ss_pred eeeCCCCCCCChHHHHHHhhhc
Q 016565 357 LLNLRYDMIGNAVSLLLCKLFF 378 (387)
Q Consensus 357 ~L~L~~N~LgD~GVk~LCeaL~ 378 (387)
+|+|++|.+++.|+..+++++.
T Consensus 174 ~L~L~~n~i~~~~~~~l~~~l~ 195 (461)
T 1z7x_W 174 ELTVSNNDINEAGVRVLCQGLK 195 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHH
T ss_pred EEECcCCCcchHHHHHHHHHHh
Confidence 8888888888888888888763
No 8
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.61 E-value=8.8e-16 Score=141.82 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=76.4
Q ss_pred HHHHHHHhcCCCcccccccceeeccc-ccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCcc
Q 016565 242 VEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSL 320 (387)
Q Consensus 242 v~~LCe~L~~p~C~~~~Lq~L~L~~c-~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L 320 (387)
|+.....+...++ .|+.|.|..+ .+ . ......|+.+|..|.+|++|+|++|.++|.||+.|+++|+.-. +|
T Consensus 29 v~~~l~~ll~~n~---~L~~L~L~~nn~i-g---d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~-tL 100 (197)
T 1pgv_A 29 VESCINRLREDDT---DLKEVNINNMKRV-S---KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SL 100 (197)
T ss_dssp HHHHHHHHHTTCS---SCCEEECTTCCSS-C---HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SC
T ss_pred HHHHHHHHHhcCC---CccEEECCCCCCC-C---HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC-cc
Confidence 4433333334444 5777777654 54 3 2233457777777777777777777777777777777776544 67
Q ss_pred ceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCC---CCCChHHHHHHhhhc
Q 016565 321 SILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYD---MIGNAVSLLLCKLFF 378 (387)
Q Consensus 321 ~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N---~LgD~GVk~LCeaL~ 378 (387)
++|+|+.|+|+. .+..+|+.+|..| ++|++|+|++| .+||+|.+.++++|.
T Consensus 101 ~~L~L~~N~Ig~----~Ga~ala~aL~~N---~tL~~L~L~n~~~~~ig~~g~~~ia~aL~ 154 (197)
T 1pgv_A 101 RVLNVESNFLTP----ELLARLLRSTLVT---QSIVEFKADNQRQSVLGNQVEMDMMMAIE 154 (197)
T ss_dssp CEEECCSSBCCH----HHHHHHHHHTTTT---CCCSEEECCCCSSCCCCHHHHHHHHHHHH
T ss_pred CeEecCCCcCCH----HHHHHHHHHHhhC---CceeEEECCCCcCcCcCHHHHHHHHHHHH
Confidence 777777777772 2235666777766 35777777643 567777777777764
No 9
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=5.7e-15 Score=143.50 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=106.9
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~ 276 (387)
.|++|.++.. +++.+...++.++...+++|++|+|++|.+++.++..+++++.+..+ +|++|.|..|.+.. .
T Consensus 110 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~---~L~~L~Ls~n~l~~----~ 182 (362)
T 3goz_A 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA---NVNSLNLRGNNLAS----K 182 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT---TCCEEECTTSCGGG----S
T ss_pred CccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc---cccEeeecCCCCch----h
Confidence 5666666533 55556666666666323567777777777777777777777776655 67777777777632 2
Q ss_pred hhHHHHHHHhcCC-CCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCC
Q 016565 277 VVVELVSFLSSGR-SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (387)
Q Consensus 277 ~~~~L~s~L~~n~-sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsL 355 (387)
.+..++.+|..++ +|++|||++|.+++.|+..|..++.....+|++|+|++|.|++ .+.+.++..+..+ ++|
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~----~~~~~l~~~~~~l---~~L 255 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG----PSLENLKLLKDSL---KHL 255 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC----CCHHHHHHTTTTT---TTC
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc----HHHHHHHHHHhcC---CCc
Confidence 2335666677664 7777777777777777777777776644467777777777773 1223444444444 457
Q ss_pred CeeeCCCCC---CCChHHHHHHhhh
Q 016565 356 RLLNLRYDM---IGNAVSLLLCKLF 377 (387)
Q Consensus 356 t~L~L~~N~---LgD~GVk~LCeaL 377 (387)
++|+|++|. +.+.|++.+.+++
T Consensus 256 ~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 256 QTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp SEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred cEEEeccCCccccCHHHHHHHHHHh
Confidence 777777776 6666666666654
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=3.2e-14 Score=138.60 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=96.0
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCC---------CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeeccc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNS---------ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS 267 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~---------~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c 267 (387)
.|++|.+++. ++..+...+...|. +. ++|++|+|++|.+++.++..+++++.... +|+.|.|..|
T Consensus 123 ~L~~L~L~~n~l~~~~~~~l~~~l~-~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~----~L~~L~L~~n 197 (386)
T 2ca6_A 123 PLEHLYLHNNGLGPQAGAKIARALQ-ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR----LLHTVKMVQN 197 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHHH-HHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT----TCCEEECCSS
T ss_pred CCCEEECcCCCCCHHHHHHHHHHHH-HHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC----CcCEEECcCC
Confidence 4555555533 44444444444443 22 46666666666666666666666664432 4666666666
Q ss_pred ccccCCCcchhHHHHH-HHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhh
Q 016565 268 SFIENCPSSVVVELVS-FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSL 346 (387)
Q Consensus 268 ~l~~~~~~~~~~~L~s-~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL 346 (387)
.+.. .....++. .+...++|+.|+|++|.+++.|+..+..++.... +|++|+|++|.|++ .+...++.+|
T Consensus 198 ~l~~----~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~L~~L~L~~n~i~~----~~~~~l~~~l 268 (386)
T 2ca6_A 198 GIRP----EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLNDCLLSA----RGAAAVVDAF 268 (386)
T ss_dssp CCCH----HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECTTCCCCH----HHHHHHHHHH
T ss_pred CCCH----hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-CcCEEECCCCCCch----hhHHHHHHHH
Confidence 6521 11112444 5566667777777777777777666666555433 57777777777763 1123455555
Q ss_pred cc--CCCCCCCCeeeCCCCCCCChHHHHHHhhh
Q 016565 347 GA--GKSLQSLRLLNLRYDMIGNAVSLLLCKLF 377 (387)
Q Consensus 347 ~~--n~s~qsLt~L~L~~N~LgD~GVk~LCeaL 377 (387)
.. + ++|++|+|++|.|.+.|++.+.+++
T Consensus 269 ~~~~~---~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 269 SKLEN---IGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp HTCSS---CCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred hhccC---CCeEEEECcCCcCCHHHHHHHHHHH
Confidence 43 4 4677888888888877777777776
No 11
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.52 E-value=4e-14 Score=126.72 Aligned_cols=123 Identities=14% Similarity=0.155 Sum_probs=104.2
Q ss_pred hHHHHHHHHhcCCCcccccccceeeccc-ccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCC
Q 016565 240 SFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASS 318 (387)
Q Consensus 240 ~~v~~LCe~L~~p~C~~~~Lq~L~L~~c-~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc 318 (387)
...+.+.+++... + +|++|.|..+ .+ . ......|+.+|..+++|++|||++|.++|+|++.|+++|... .
T Consensus 23 ~~~~~l~~~l~~~-~---~L~~L~L~~n~~i-~---~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n-~ 93 (185)
T 1io0_A 23 DVEETLKRIQNND-P---DLEEVNLNNIMNI-P---VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-N 93 (185)
T ss_dssp CHHHHHHHHHTTC-T---TCCEEECTTCTTC-C---HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-S
T ss_pred HHHHHHHHHHhcC-C---CCCEEEecCCCCC-C---HHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC-C
Confidence 4455666777653 3 7999999999 87 4 344457999999999999999999999999999999999854 4
Q ss_pred ccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeC--CCCCCCChHHHHHHhhhc
Q 016565 319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL--RYDMIGNAVSLLLCKLFF 378 (387)
Q Consensus 319 ~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L--~~N~LgD~GVk~LCeaL~ 378 (387)
+|++|+|++|.|+. .+..+++.+|..+ ++|++|+| +.|.|+|+|++.|+++|.
T Consensus 94 ~L~~L~L~~N~i~~----~g~~~l~~~L~~n---~~L~~L~L~~~~N~i~~~g~~~l~~~L~ 148 (185)
T 1io0_A 94 TLKSLNVESNFISG----SGILALVEALQSN---TSLIELRIDNQSQPLGNNVEMEIANMLE 148 (185)
T ss_dssp SCCEEECCSSCCCH----HHHHHHHHGGGGC---SSCCEEECCCCSSCCCHHHHHHHHHHHH
T ss_pred CcCEEECcCCcCCH----HHHHHHHHHHHhC---CCceEEEecCCCCCCCHHHHHHHHHHHH
Confidence 89999999999993 3347789999988 57999999 889999999999999985
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=6.1e-14 Score=136.65 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=112.9
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHH-HhcCCCcccccccceeecccccccCCCc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR-SLCSKRKRIHKIENLSIDISSFIENCPS 275 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe-~L~~p~C~~~~Lq~L~L~~c~l~~~~~~ 275 (387)
.|++|.+++. +++.+...++.++... ++|++|+|++|.+.+.|+..+.. .+.+- .+|+.|.|..+.+..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~----~~L~~L~Ls~n~l~~---- 230 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYC----QELKVLDLQDNTFTH---- 230 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGC----TTCCEEECCSSCCHH----
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcC----CCccEEECcCCCCCc----
Confidence 5677766643 5556667777777644 57888888888888888877777 66442 268888888777621
Q ss_pred chhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhcc-CCCccceEeccCcccCCcccccCCcchhhhhc-cCCCCC
Q 016565 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE-ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG-AGKSLQ 353 (387)
Q Consensus 276 ~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~-psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~-~n~s~q 353 (387)
.....+...+...++|++|+|++|.+++.|+..+..+|.. +..+|++|+|++|.|++ .+...+..++. .. +
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~----~g~~~l~~~l~~~l---~ 303 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL----DAVRTLKTVIDEKM---P 303 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH----HHHHHHHHHHHHHC---T
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH----HHHHHHHHHHHhcC---C
Confidence 1223567777778888888888888888888888877754 34468888888888883 12234555553 33 3
Q ss_pred CCCeeeCCCCCCCChH--HHHHHhhh
Q 016565 354 SLRLLNLRYDMIGNAV--SLLLCKLF 377 (387)
Q Consensus 354 sLt~L~L~~N~LgD~G--Vk~LCeaL 377 (387)
+|++|+|++|.+.+.| +..+.+++
T Consensus 304 ~L~~L~l~~N~l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 304 DLLFLELNGNRFSEEDDVVDEIREVF 329 (386)
T ss_dssp TCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred CceEEEccCCcCCcchhHHHHHHHHh
Confidence 5888888888888877 57666654
No 13
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.09 E-value=4.7e-09 Score=99.16 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.0
Q ss_pred CcccccCChhhHHHHHhcCCch
Q 016565 26 IPYVYELPADLFDILLTCLPPL 47 (387)
Q Consensus 26 ~p~~~~l~~~~~~~~~~~lp~~ 47 (387)
.+.+.+||+|.+..|.+.||+.
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~ 27 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLP 27 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHH
T ss_pred cCChhhCCHHHHHHHHHhCCHH
Confidence 3557999999999999999887
No 14
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=2.8e-10 Score=113.01 Aligned_cols=139 Identities=19% Similarity=0.168 Sum_probs=101.4
Q ss_pred CCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeeccc--ccccCCCcchhHHHHHHHh--cCCCCceeeCCCC
Q 016565 224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS--SFIENCPSSVVVELVSFLS--SGRSLCSLKLRHC 299 (387)
Q Consensus 224 ~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c--~l~~~~~~~~~~~L~s~L~--~n~sL~~LdLs~N 299 (387)
.++|++|+|..+.+.++++..++.+ .-| +|+.|.|..+ .. ..+.. -.+++..+. ..|+|++|+|++|
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~-~lp-----~L~~L~L~~~~~~~-~~~~~--~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGS-DLP-----NLEKLVLYVGVEDY-GFDGD--MNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHS-BCT-----TCCEEEEECBCGGG-TCCSC--GGGTGGGSCTTTCTTCCEEEEESC
T ss_pred CCCCcEEEEecCCCChHHHHHHHHc-cCC-----CCcEEEEecccccc-ccchh--HHHHHHHHhcCCCCCcCEEeCCCC
Confidence 3689999999999999998888753 234 7888887532 11 11110 113445554 3689999999999
Q ss_pred CCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHHHhhhcc
Q 016565 300 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLLCKLFFP 379 (387)
Q Consensus 300 ~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~LCeaL~~ 379 (387)
.++|.|++.+.++.. ...|++|+|+.|.|++.++ ++++..|..+ ++|++|+|+.|.|+|+|++.|.+|+.+
T Consensus 263 ~i~~~~~~~la~a~~--~~~L~~LdLs~n~L~d~G~----~~L~~~L~~l---~~L~~L~L~~n~i~d~~~~~l~~alg~ 333 (362)
T 2ra8_A 263 EEQNVVVEMFLESDI--LPQLETMDISAGVLTDEGA----RLLLDHVDKI---KHLKFINMKYNYLSDEMKKELQKSLPM 333 (362)
T ss_dssp TTHHHHHHHHHHCSS--GGGCSEEECCSSCCBHHHH----HHHHTTHHHH---TTCSEEECCSBBCCHHHHHHHHHHCCS
T ss_pred CCchHHHHHHHhCcc--CCCCCEEECCCCCCChHHH----HHHHhhcccC---CcceEEECCCCcCCHHHHHHHHHHcCC
Confidence 999999998886532 3379999999999994211 4455555555 479999999999999999999999844
Q ss_pred C
Q 016565 380 T 380 (387)
Q Consensus 380 ~ 380 (387)
.
T Consensus 334 ~ 334 (362)
T 2ra8_A 334 K 334 (362)
T ss_dssp E
T ss_pred E
Confidence 3
No 15
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.78 E-value=2e-08 Score=94.85 Aligned_cols=146 Identities=20% Similarity=0.241 Sum_probs=105.3
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeeccc-ccccCCCc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPS 275 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c-~l~~~~~~ 275 (387)
.+++|.++.. ++..+ +...+ .+.++|++|+|++|.+.+.+...+.. ..+|++|.|..| .+..
T Consensus 94 ~L~~L~L~~~~l~~~~---~~~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~--------~~~L~~L~L~~~~~l~~---- 157 (336)
T 2ast_B 94 RVQHMDLSNSVIEVST---LHGIL-SQCSKLQNLSLEGLRLSDPIVNTLAK--------NSNLVRLNLSGCSGFSE---- 157 (336)
T ss_dssp CCCEEECTTCEECHHH---HHHHH-TTBCCCSEEECTTCBCCHHHHHHHTT--------CTTCSEEECTTCBSCCH----
T ss_pred CCCEEEccCCCcCHHH---HHHHH-hhCCCCCEEeCcCcccCHHHHHHHhc--------CCCCCEEECCCCCCCCH----
Confidence 4677776644 33322 22333 46789999999999998777765532 238999999998 5522
Q ss_pred chhHHHHHHHhcCCCCceeeCCCC-CCCchhHHHHHHHhccCCCccceEeccCc--ccCCcccccCCcchhhhhccCCCC
Q 016565 276 SVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGN--SIGGWLSKYDRSGPLFSLGAGKSL 352 (387)
Q Consensus 276 ~~~~~L~s~L~~n~sL~~LdLs~N-~L~D~GvklLC~~Ll~psc~L~~L~L~~n--~L~g~l~~~~c~~Ls~aL~~n~s~ 352 (387)
..+...+...++|++|+|++| .+.+.|+..+...+. . +|++|+|++| .++. ..+...+...
T Consensus 158 ---~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~--~-~L~~L~l~~~~~~~~~-------~~l~~~~~~~--- 221 (336)
T 2ast_B 158 ---FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS--E-TITQLNLSGYRKNLQK-------SDLSTLVRRC--- 221 (336)
T ss_dssp ---HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC--T-TCCEEECCSCGGGSCH-------HHHHHHHHHC---
T ss_pred ---HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc--c-CCCEEEeCCCcccCCH-------HHHHHHHhhC---
Confidence 136667888899999999999 999998777665542 1 7999999999 5552 2244445555
Q ss_pred CCCCeeeCCCCC-CCChHHHHHHh
Q 016565 353 QSLRLLNLRYDM-IGNAVSLLLCK 375 (387)
Q Consensus 353 qsLt~L~L~~N~-LgD~GVk~LCe 375 (387)
++|++|+|++|. +.|.++..+..
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGG
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhC
Confidence 479999999999 88888876643
No 16
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.78 E-value=9.2e-09 Score=104.43 Aligned_cols=76 Identities=12% Similarity=-0.066 Sum_probs=48.7
Q ss_pred CCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 288 n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
.++|++|+|++|.+++.|+..+..++ .+|++|+|++|.|++ ..+....... ++|++|+|++|.+.+
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~l~~n~l~~-------~~~~~~~~~l---~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGC----PNLQKLEMRGCCFSE-------RAIAAAVTKL---PSLRYLWVQGYRASM 527 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCC----TTCCEEEEESCCCBH-------HHHHHHHHHC---SSCCEEEEESCBCCT
T ss_pred CccceEeeccCCCCCHHHHHHHHhcC----cccCeeeccCCCCcH-------HHHHHHHHhc---CccCeeECcCCcCCH
Confidence 45666666666666666666554333 256677777776662 1122222234 469999999999999
Q ss_pred hHHHHHHhhh
Q 016565 368 AVSLLLCKLF 377 (387)
Q Consensus 368 ~GVk~LCeaL 377 (387)
.|++.|.+++
T Consensus 528 ~~~~~l~~~~ 537 (592)
T 3ogk_B 528 TGQDLMQMAR 537 (592)
T ss_dssp TCTTGGGGCC
T ss_pred HHHHHHHHhC
Confidence 9998888763
No 17
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.73 E-value=2.9e-08 Score=100.65 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=48.8
Q ss_pred CCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 288 n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
.++|+.|+|++|.+.|.|+..+..++. +|++|+|++|.+++ ..+....... ++|+.|+|++|.+.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~----~L~~L~L~~n~~~~-------~~~~~~~~~l---~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCD----SLRKLEIRDCPFGD-------KALLANASKL---ETMRSLWMSSCSVSF 520 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCT----TCCEEEEESCSCCH-------HHHHHTGGGG---GGSSEEEEESSCCBH
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCC----CcCEEECcCCCCcH-------HHHHHHHHhC---CCCCEEeeeCCCCCH
Confidence 455666666666666666665554432 46666666666652 1111122223 468999999999999
Q ss_pred hHHHHHHhhhccCc
Q 016565 368 AVSLLLCKLFFPTI 381 (387)
Q Consensus 368 ~GVk~LCeaL~~~~ 381 (387)
+|++.|.+++ |.+
T Consensus 521 ~~~~~l~~~l-p~l 533 (594)
T 2p1m_B 521 GACKLLGQKM-PKL 533 (594)
T ss_dssp HHHHHHHHHC-TTE
T ss_pred HHHHHHHHhC-CCC
Confidence 9999887664 444
No 18
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.1e-08 Score=101.50 Aligned_cols=134 Identities=15% Similarity=0.006 Sum_probs=94.1
Q ss_pred HHHHHHhhCCCCCcEEEcccCC-CChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHh--cCCCC
Q 016565 215 ALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLS--SGRSL 291 (387)
Q Consensus 215 ~L~~~L~~n~~~Lt~L~L~~n~-L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~--~n~sL 291 (387)
++..++. ..++|++|+|++|. +.- ..++ ..+|++|.|..|.+.. +-...|. ..|+|
T Consensus 163 ~L~~ll~-~~P~L~~L~L~g~~~l~l-------~~~~-----~~~L~~L~L~~~~l~~--------~~l~~l~~~~lp~L 221 (362)
T 2ra8_A 163 DLSPVLD-AMPLLNNLKIKGTNNLSI-------GKKP-----RPNLKSLEIISGGLPD--------SVVEDILGSDLPNL 221 (362)
T ss_dssp BCHHHHH-TCTTCCEEEEECCBTCBC-------CSCB-----CTTCSEEEEECSBCCH--------HHHHHHHHSBCTTC
T ss_pred CHHHHHh-cCCCCcEEEEeCCCCcee-------cccc-----CCCCcEEEEecCCCCh--------HHHHHHHHccCCCC
Confidence 3445555 55799999999872 210 0122 2399999999888733 2333444 57999
Q ss_pred ceeeCCC---CCCCchhHHHHHHHhcc-CCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 292 CSLKLRH---CHLDRDFGRMVFSSLLE-ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 292 ~~LdLs~---N~L~D~GvklLC~~Ll~-psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
++|+|+. |..++.|++.|...+.. ...+|++|+|.+|.++. .++..++.+ +.+++|++|+|+.|.|+|
T Consensus 222 ~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~----~~~~~la~a----~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN----VVVEMFLES----DILPQLETMDISAGVLTD 293 (362)
T ss_dssp CEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH----HHHHHHHHC----SSGGGCSEEECCSSCCBH
T ss_pred cEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch----HHHHHHHhC----ccCCCCCEEECCCCCCCh
Confidence 9999964 44577778777755543 34589999999999993 112334432 234679999999999999
Q ss_pred hHHHHHHhhh
Q 016565 368 AVSLLLCKLF 377 (387)
Q Consensus 368 ~GVk~LCeaL 377 (387)
.|++.|.++|
T Consensus 294 ~G~~~L~~~L 303 (362)
T 2ra8_A 294 EGARLLLDHV 303 (362)
T ss_dssp HHHHHHHTTH
T ss_pred HHHHHHHhhc
Confidence 9999999886
No 19
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.61 E-value=3.2e-07 Score=92.88 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=78.8
Q ss_pred CCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeec--c----cccccCCCcchhHHHHHHHhcCCCCceeeCCCC
Q 016565 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID--I----SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC 299 (387)
Q Consensus 226 ~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~--~----c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N 299 (387)
+|++|.+++|.+.+.++..+...+ .+|+.|.|. . +.+ ++.. ....+...+...++|++|+|++
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~-------~~L~~L~L~~~~~~~~~~l-~~~~--~~~~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNR-------PNMTRFRLCIIEPKAPDYL-TLEP--LDIGFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHC-------TTCCEEEEEESSTTCCCTT-TCCC--THHHHHHHHHHCTTCCEEECCS-
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhC-------CCcceeEeecccCCCcccc-cCCc--hhhHHHHHHhhCCCccEEeecC-
Confidence 444444444444444444333322 267777777 2 222 1110 0124555566678888888877
Q ss_pred CCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHHHhhh
Q 016565 300 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLLCKLF 377 (387)
Q Consensus 300 ~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~LCeaL 377 (387)
.+.|.|+..++..+. +|+.|+|++|.+++ ..+....... ++|+.|+|++|.++|.|+..+..++
T Consensus 442 ~l~~~~~~~l~~~~~----~L~~L~L~~~~i~~-------~~~~~l~~~~---~~L~~L~L~~n~~~~~~~~~~~~~l 505 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAK----KMEMLSVAFAGDSD-------LGMHHVLSGC---DSLRKLEIRDCPFGDKALLANASKL 505 (594)
T ss_dssp SCCHHHHHHHHHHCT----TCCEEEEESCCSSH-------HHHHHHHHHC---TTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred cccHHHHHHHHHhch----hccEeeccCCCCcH-------HHHHHHHhcC---CCcCEEECcCCCCcHHHHHHHHHhC
Confidence 888888888875332 69999999999984 1121212344 4699999999999999998776654
No 20
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.56 E-value=1.5e-07 Score=83.43 Aligned_cols=109 Identities=13% Similarity=0.142 Sum_probs=75.3
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCC-C
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-L 301 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~-L 301 (387)
+.++|++|+|++|.+.+.+...+ ....+|+.|.|..+.+.. .....+...++|++|+|++|. +
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~~~l--------~~l~~L~~L~Ls~n~i~~--------~~~~~l~~l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKIPNL--------SGLTSLTLLDISHSAHDD--------SILTKINTLPKVNSIDLSYNGAI 149 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGSCCC--------TTCTTCCEEECCSSBCBG--------GGHHHHTTCSSCCEEECCSCTBC
T ss_pred cCCCCCEEEeECCccCcccChhh--------cCCCCCCEEEecCCccCc--------HhHHHHhhCCCCCEEEccCCCCc
Confidence 56789999999999875443321 123478999999988733 244567778899999999998 7
Q ss_pred CchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 302 ~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
++-- .+.+-. +|++|+|++|.|++ +. .+... ++|++|+|++|++|+
T Consensus 150 ~~~~------~l~~l~-~L~~L~l~~n~i~~---------~~-~l~~l---~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 150 TDIM------PLKTLP-ELKSLNIQFDGVHD---------YR-GIEDF---PKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCG------GGGGCS-SCCEEECTTBCCCC---------CT-TGGGC---SSCCEEEECBC----
T ss_pred cccH------hhcCCC-CCCEEECCCCCCcC---------hH-HhccC---CCCCEEEeeCcccCC
Confidence 7752 343333 79999999999985 11 34445 469999999999985
No 21
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.53 E-value=1.1e-07 Score=89.86 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=54.8
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCc--ccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRK--RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C--~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~ 300 (387)
+.++|++|+|++|.+.... .+..+.| ...+|++|.|..+.+.. ........+...++|++|||++|.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~------~~~~~~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGER------GLMAALCPHKFPAIQNLALRNTGMET-----PTGVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp CCTTCCEEECCSCTTCHHH------HHHTTSCTTSSCCCCSCBCCSSCCCC-----HHHHHHHHHHHTCCCSSEECTTSC
T ss_pred cCCCCCEEECCCCCCccch------hhhHHHhhhcCCCCCEEECCCCCCCc-----hHHHHHHHHhcCCCCCEEECCCCC
Confidence 5567888888888753211 1111222 22368888888888622 111222234556788888888888
Q ss_pred CCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 301 L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
+++.+...+. .+..+ .+|++|+|++|+|+
T Consensus 236 l~~~~p~~~~-~~~~~-~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 236 LRATVNPSAP-RCMWS-SALNSLNLSFAGLE 264 (310)
T ss_dssp CCCCCCSCCS-SCCCC-TTCCCEECCSSCCC
T ss_pred CCccchhhHH-hccCc-CcCCEEECCCCCCC
Confidence 8765322221 22222 26777888877777
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.44 E-value=3e-07 Score=77.49 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=69.3
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
++|++|+|++|.+.+..+. ..-....+|+.|.|..+.+.. + ..+...++|+.|||++|.+.+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~l~~---------~-~~~~~l~~L~~L~Ls~n~i~~~ 79 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-------GLTDEFEELEFLSTINVGLTS---------I-ANLPKLNKLKKLELSDNRVSGG 79 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-------SCCTTCTTCCEEECTTSCCCC---------C-TTCCCCTTCCEEECCSSCCCSC
T ss_pred ccCeEEEccCCcCChhHHH-------HHHhhcCCCcEEECcCCCCCC---------c-hhhhcCCCCCEEECCCCcccch
Confidence 5688888888877632221 111133478888888887633 2 4466677888888888888764
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChH
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAV 369 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~G 369 (387)
-.. ....+. +|++|+|++|.|++. .....+... ++|++|+|++|.+.+..
T Consensus 80 ~~~-~~~~l~----~L~~L~ls~N~i~~~-------~~~~~~~~l---~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 80 LEV-LAEKCP----NLTHLNLSGNKIKDL-------STIEPLKKL---ENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp THH-HHHHCT----TCCEEECTTSCCCSH-------HHHGGGGGC---TTCCEEECTTCGGGGST
T ss_pred HHH-HhhhCC----CCCEEECCCCcCCCh-------HHHHHHhhC---CCCCEEeCcCCcccchH
Confidence 222 222222 588888888888741 111344454 46888888888877543
No 23
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.38 E-value=1.5e-06 Score=88.05 Aligned_cols=78 Identities=10% Similarity=-0.081 Sum_probs=42.9
Q ss_pred HhcCCCCceeeCCC--CCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCC
Q 016565 285 LSSGRSLCSLKLRH--CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRY 362 (387)
Q Consensus 285 L~~n~sL~~LdLs~--N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~ 362 (387)
+...++|++|+|++ |.+.|.++..+...+ -+|++|+|++|.+++ ..+...+... ++|+.|+|++
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~-------~~~~~~~~~~---~~L~~L~l~~ 497 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS----PNVRWMLLGYVGESD-------EGLMEFSRGC---PNLQKLEMRG 497 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSC----TTCCEEEECSCCSSH-------HHHHHHHTCC---TTCCEEEEES
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhC----ccceEeeccCCCCCH-------HHHHHHHhcC---cccCeeeccC
Confidence 34444555555542 225555555444222 136666666666663 1122223333 4688888888
Q ss_pred CCCCChHHHHHHhh
Q 016565 363 DMIGNAVSLLLCKL 376 (387)
Q Consensus 363 N~LgD~GVk~LCea 376 (387)
|.++|.|+..+...
T Consensus 498 n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 498 CCFSERAIAAAVTK 511 (592)
T ss_dssp CCCBHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHh
Confidence 88888888777654
No 24
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.38 E-value=3.3e-07 Score=78.75 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=10.0
Q ss_pred HhcCCCCceeeCCCCCCCc
Q 016565 285 LSSGRSLCSLKLRHCHLDR 303 (387)
Q Consensus 285 L~~n~sL~~LdLs~N~L~D 303 (387)
+...++|++|+|++|.+.+
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~ 85 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFG 85 (168)
T ss_dssp CCCCSSCCEEEEESCCCCS
T ss_pred hccCCCCCEEECcCCcCch
Confidence 3444555555555555544
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.35 E-value=1.2e-06 Score=77.63 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=82.1
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+.+-. .+. ...+|++|.|..+.+.. .....+...++|++|+|++|.+.
T Consensus 64 ~l~~L~~L~l~~n~~~~~~------~l~----~l~~L~~L~l~~n~l~~--------~~~~~l~~l~~L~~L~Ls~n~i~ 125 (197)
T 4ezg_A 64 YAHNIKDLTINNIHATNYN------PIS----GLSNLERLRIMGKDVTS--------DKIPNLSGLTSLTLLDISHSAHD 125 (197)
T ss_dssp GCTTCSEEEEESCCCSCCG------GGT----TCTTCCEEEEECTTCBG--------GGSCCCTTCTTCCEEECCSSBCB
T ss_pred cCCCCCEEEccCCCCCcch------hhh----cCCCCCEEEeECCccCc--------ccChhhcCCCCCCEEEecCCccC
Confidence 4578999999999775331 222 23479999999999743 12233666799999999999999
Q ss_pred chhHHHHHHHhccCCCccceEeccCcc-cCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~-L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
+.+...+. . -.+|++|+|++|. ++. +. .+... ++|++|+|++|.+.+-
T Consensus 126 ~~~~~~l~----~-l~~L~~L~L~~n~~i~~---------~~-~l~~l---~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 126 DSILTKIN----T-LPKVNSIDLSYNGAITD---------IM-PLKTL---PELKSLNIQFDGVHDY 174 (197)
T ss_dssp GGGHHHHT----T-CSSCCEEECCSCTBCCC---------CG-GGGGC---SSCCEEECTTBCCCCC
T ss_pred cHhHHHHh----h-CCCCCEEEccCCCCccc---------cH-hhcCC---CCCCEEECCCCCCcCh
Confidence 98877654 2 2389999999998 773 22 35555 4799999999999974
No 26
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.31 E-value=1.9e-07 Score=88.55 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=49.9
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhc-CCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLC-SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~-~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L 301 (387)
+.++|++|+|++|.+... + .+-..+. .. ..+|++|.|..+.+.. ............++|++|||++|.+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~-~-~~~~~~~~~~---l~~L~~L~L~~N~l~~-----~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGE-R-GLISALCPLK---FPTLQVLALRNAGMET-----PSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CCSSCCEEECCSCTTCHH-H-HHHHHSCTTS---CTTCCEEECTTSCCCC-----HHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred cCCCCCEEECCCCCcCcc-h-HHHHHHHhcc---CCCCCEEECCCCcCcc-----hHHHHHHHHhcCCCCCEEECCCCcC
Confidence 556788888888775421 1 1111110 11 1267777777777631 1112223334457777888888777
Q ss_pred CchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 302 ~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
.+.+.... +... .+|++|+|++|.|+
T Consensus 241 ~~~~~~~~---~~~l-~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 241 RDAAGAPS---CDWP-SQLNSLNLSFTGLK 266 (312)
T ss_dssp CSSCCCSC---CCCC-TTCCEEECTTSCCS
T ss_pred Ccccchhh---hhhc-CCCCEEECCCCccC
Confidence 66441000 1111 25777777777776
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.24 E-value=8.3e-07 Score=87.21 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=16.9
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHh
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSL 249 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L 249 (387)
++|++|+|++|.+.......+...+
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred ceeeeEecCCCcccccchhhhhccc
Confidence 5677777777777766666666554
No 28
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.21 E-value=8.6e-07 Score=83.81 Aligned_cols=146 Identities=15% Similarity=0.044 Sum_probs=91.8
Q ss_pred ccccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCc
Q 016565 197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (387)
Q Consensus 197 C~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~ 275 (387)
-+++++.+... ++......+...+.. ++|++|+|++|.+...+...+.+ ....+|+.|.|..+.+ .....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~------~~~~~L~~L~Ls~n~i-~~~~~ 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY--SRLKELTLEDLKITGTMPPLPLE------ATGLALSSLRLRNVSW-ATGRS 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH--SCCCEEEEESCCCBSCCCCCSSS------CCCBCCSSCEEESCCC-SSTTS
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc--CceeEEEeeCCEeccchhhhhhh------ccCCCCCEEEeecccc-cchhh
Confidence 34555655543 556566666665542 46999999999986333221110 2234899999999997 42221
Q ss_pred chhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcch--hhhhccCCCCC
Q 016565 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP--LFSLGAGKSLQ 353 (387)
Q Consensus 276 ~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~L--s~aL~~n~s~q 353 (387)
.. -...+...++|++|+|++|.+...... .+.+.. +|++|+|++|++.+. ..+ +..+... +
T Consensus 135 ~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~-~L~~L~Ls~N~l~~~------~~~~~~~~~~~l---~ 197 (310)
T 4glp_A 135 WL---AELQQWLKPGLKVLSIAQAHSPAFSCE----QVRAFP-ALTSLDLSDNPGLGE------RGLMAALCPHKF---P 197 (310)
T ss_dssp SH---HHHHTTBCSCCCEEEEECCSSCCCCTT----SCCCCT-TCCEEECCSCTTCHH------HHHHTTSCTTSS---C
T ss_pred hh---HHHHhhhccCCCEEEeeCCCcchhhHH----HhccCC-CCCEEECCCCCCccc------hhhhHHHhhhcC---C
Confidence 11 113344688999999999999654322 333333 799999999998741 001 1112233 5
Q ss_pred CCCeeeCCCCCCCCh
Q 016565 354 SLRLLNLRYDMIGNA 368 (387)
Q Consensus 354 sLt~L~L~~N~LgD~ 368 (387)
+|++|+|++|.|..-
T Consensus 198 ~L~~L~Ls~N~l~~l 212 (310)
T 4glp_A 198 AIQNLALRNTGMETP 212 (310)
T ss_dssp CCCSCBCCSSCCCCH
T ss_pred CCCEEECCCCCCCch
Confidence 799999999999743
No 29
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.19 E-value=5.2e-06 Score=78.40 Aligned_cols=109 Identities=23% Similarity=0.213 Sum_probs=59.5
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+.+- ..+.+ ..+|+.|.|..+.+.. + ..+...++|++|+|++|.+.
T Consensus 110 ~l~~L~~L~L~~n~i~~~------~~l~~----l~~L~~L~l~~n~l~~---------~-~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI------NGLVH----LPQLESLYLGNNKITD---------I-TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp TCTTCCEEECTTSCCCCC------GGGGG----CTTCCEEECCSSCCCC---------C-GGGGGCTTCSEEECCSSCCC
T ss_pred cCCCCCEEECCCCcCCCC------hhhcC----CCCCCEEEccCCcCCc---------c-hhhccCCCCCEEEccCCccc
Confidence 445666666666666531 11211 2256666666666522 2 23555666666666666666
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSL 371 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk 371 (387)
+... +... -+|+.|+|++|.|++ +. ++... ++|+.|+|++|.+.+.++.
T Consensus 170 ~~~~------l~~l-~~L~~L~L~~N~i~~---------l~-~l~~l---~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 170 DIVP------LAGL-TKLQNLYLSKNHISD---------LR-ALAGL---KNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp CCGG------GTTC-TTCCEEECCSSCCCB---------CG-GGTTC---TTCSEEEEEEEEEECCCEE
T ss_pred cchh------hcCC-CccCEEECCCCcCCC---------Ch-hhccC---CCCCEEECcCCcccCCccc
Confidence 5442 2222 256666666666663 11 23333 4577777777777665554
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.19 E-value=1.6e-06 Score=74.43 Aligned_cols=115 Identities=16% Similarity=0.064 Sum_probs=79.5
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+... ..+ ....+|+.|.|..+.+.. . +...+...++|++|+|++|.+.
T Consensus 47 ~l~~L~~L~l~~n~l~~~------~~~----~~l~~L~~L~Ls~N~l~~-~-------~~~~~~~l~~L~~L~Ls~N~l~ 108 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV------SNL----PKLPKLKKLELSENRIFG-G-------LDMLAEKLPNLTHLNLSGNKLK 108 (168)
T ss_dssp GGGGCCEEEEESSCCCCC------SSC----CCCSSCCEEEEESCCCCS-C-------CCHHHHHCTTCCEEECBSSSCC
T ss_pred hCCCCCEEeCcCCCCCCh------hhh----ccCCCCCEEECcCCcCch-H-------HHHHHhhCCCCCEEeccCCccC
Confidence 336899999999998743 222 234489999999999833 1 2233445789999999999998
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
+-..- ..+..-. +|+.|+|++|.|++.- .....++... ++|++|+++.|.+..
T Consensus 109 ~~~~~---~~l~~l~-~L~~L~l~~N~l~~~~-----~~~~~~~~~l---~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 109 DISTL---EPLKKLE-CLKSLDLFNCEVTNLN-----DYRESVFKLL---PQLTYLDGYDREDQE 161 (168)
T ss_dssp SSGGG---GGGSSCS-CCCEEECCSSGGGTST-----THHHHHHTTC---SSCCEETTEETTSCB
T ss_pred cchhH---HHHhcCC-CCCEEEeeCCcCcchH-----HHHHHHHHhC---ccCcEecCCCCChhh
Confidence 84321 1333323 7999999999999510 1112355555 479999999998764
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.18 E-value=5.5e-06 Score=78.55 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=7.8
Q ss_pred CCCCcEEEcccCCCC
Q 016565 224 SETLASLEFLHCKLS 238 (387)
Q Consensus 224 ~~~Lt~L~L~~n~L~ 238 (387)
.++|++|+|++|.+.
T Consensus 220 ~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 220 MTRLNSLKIGNNKIT 234 (347)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCcCCEEEccCCccC
Confidence 345555555555544
No 32
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.17 E-value=1.3e-06 Score=75.99 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=67.7
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
++|++|+|++|.+.+- +.+. ...+|+.|.|..+.+... .. . .+...++|++|+|++|.+++-
T Consensus 42 ~~L~~L~Ls~N~l~~~------~~l~----~l~~L~~L~Ls~N~l~~~-~~----~---~~~~l~~L~~L~L~~N~i~~~ 103 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL------DGFP----LLRRLKTLLVNNNRICRI-GE----G---LDQALPDLTELILTNNSLVEL 103 (176)
T ss_dssp TCCSEEECCSSCCCEE------CCCC----CCSSCCEEECCSSCCCEE-CS----C---HHHHCTTCCEEECCSCCCCCG
T ss_pred CCCCEEECCCCCCCcc------cccc----cCCCCCEEECCCCccccc-Cc----c---hhhcCCCCCEEECCCCcCCcc
Confidence 4788888888887641 2222 233688888888877331 11 1 134567888888888888764
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
..- ..+.+- .+|++|+|++|.++.. ...-..++... ++|+.||++.|.+.+
T Consensus 104 ~~~---~~l~~l-~~L~~L~l~~N~i~~~-----~~~~~~~~~~l---~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 104 GDL---DPLASL-KSLTYLCILRNPVTNK-----KHYRLYVIYKV---PQVRVLDFQKVKLKE 154 (176)
T ss_dssp GGG---GGGGGC-TTCCEEECCSSGGGGS-----TTHHHHHHHHC---TTCSEETTEECCHHH
T ss_pred hhh---HhhhcC-CCCCEEEecCCCCCCc-----HhHHHHHHHHC---CccceeCCCcCCHHH
Confidence 420 122222 2688888888888730 01111244455 358888888887664
No 33
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.17 E-value=3.2e-06 Score=80.06 Aligned_cols=116 Identities=22% Similarity=0.144 Sum_probs=72.4
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHH--hcCCCCceeeCCCCCCC
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFL--SSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L--~~n~sL~~LdLs~N~L~ 302 (387)
++|++|+|++|.+..... +.+. ...+|+.|.|..+.+.. .. .+...+ ...++|++|+|++|.+.
T Consensus 149 ~~L~~L~L~~N~l~~~~~----~~~~----~l~~L~~L~Ls~N~l~~----~~--~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSC----EQVR----VFPALSTLDLSDNPELG----ER--GLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp TTCCEEEEESCSCCCCCT----TTCC----CCSSCCEEECCSCTTCH----HH--HHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCCcEEEeeCCCCccchH----HHhc----cCCCCCEEECCCCCcCc----ch--HHHHHHHhccCCCCCEEECCCCcCc
Confidence 678888888888753211 1121 23478889998888522 00 122233 66789999999999997
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
.-+ .+...+...--+|++|+|++|.|++... ...+... ++|++|+|++|.|.
T Consensus 215 ~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~~l---~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 215 TPS--GVCSALAAARVQLQGLDLSHNSLRDAAG-------APSCDWP---SQLNSLNLSFTGLK 266 (312)
T ss_dssp CHH--HHHHHHHHTTCCCSEEECTTSCCCSSCC-------CSCCCCC---TTCCEEECTTSCCS
T ss_pred chH--HHHHHHHhcCCCCCEEECCCCcCCcccc-------hhhhhhc---CCCCEEECCCCccC
Confidence 433 2333333222379999999999985211 0111122 46999999999987
No 34
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.16 E-value=2.8e-06 Score=71.45 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=76.7
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+.+- ..+.. ..+|+.|.|..+.+.. .+...+...++|++|+|++|.+.
T Consensus 40 ~l~~L~~L~l~~n~l~~~------~~~~~----l~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~ls~N~i~ 101 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI------ANLPK----LNKLKKLELSDNRVSG--------GLEVLAEKCPNLTHLNLSGNKIK 101 (149)
T ss_dssp TCTTCCEEECTTSCCCCC------TTCCC----CTTCCEEECCSSCCCS--------CTHHHHHHCTTCCEEECTTSCCC
T ss_pred hcCCCcEEECcCCCCCCc------hhhhc----CCCCCEEECCCCcccc--------hHHHHhhhCCCCCEEECCCCcCC
Confidence 557899999999998743 33332 3479999999999833 13444566889999999999998
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRY 362 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~ 362 (387)
+-... ..+.+-. +|++|+|++|.|++.- .....++... ++|+.|+++.
T Consensus 102 ~~~~~---~~~~~l~-~L~~L~l~~N~l~~~~-----~~~~~~~~~l---~~L~~L~l~d 149 (149)
T 2je0_A 102 DLSTI---EPLKKLE-NLKSLDLFNCEVTNLN-----DYRENVFKLL---PQLTYLDGYD 149 (149)
T ss_dssp SHHHH---GGGGGCT-TCCEEECTTCGGGGST-----THHHHHHHHC---TTCCEETTBC
T ss_pred ChHHH---HHHhhCC-CCCEEeCcCCcccchH-----HHHHHHHHHC---CCcccccCCC
Confidence 74321 1333333 7999999999999510 1112355566 4699999863
No 35
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.16 E-value=6.1e-06 Score=77.90 Aligned_cols=124 Identities=22% Similarity=0.191 Sum_probs=86.7
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~ 276 (387)
.+++|.++.. ++...- ..+.++|++|+|++|.+.+- ..+.. ..+|+.|.|..+.+..
T Consensus 69 ~L~~L~L~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~~------~~l~~----l~~L~~L~L~~n~i~~----- 126 (291)
T 1h6t_A 69 NVTKLFLNGNKLTDIKP-------LANLKNLGWLFLDENKVKDL------SSLKD----LKKLKSLSLEHNGISD----- 126 (291)
T ss_dssp TCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCG------GGGTT----CTTCCEEECTTSCCCC-----
T ss_pred CCCEEEccCCccCCCcc-------cccCCCCCEEECCCCcCCCC------hhhcc----CCCCCEEECCCCcCCC-----
Confidence 4666666533 332211 34778999999999998752 12322 3479999999999733
Q ss_pred hhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCC
Q 016565 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (387)
Q Consensus 277 ~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt 356 (387)
+ ..+...++|++|+|++|.+.+- ..+.... +|++|+|++|.|++. .. +... ++|+
T Consensus 127 ----~-~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~-~L~~L~L~~N~l~~~---------~~-l~~l---~~L~ 181 (291)
T 1h6t_A 127 ----I-NGLVHLPQLESLYLGNNKITDI------TVLSRLT-KLDTLSLEDNQISDI---------VP-LAGL---TKLQ 181 (291)
T ss_dssp ----C-GGGGGCTTCCEEECCSSCCCCC------GGGGGCT-TCSEEECCSSCCCCC---------GG-GTTC---TTCC
T ss_pred ----C-hhhcCCCCCCEEEccCCcCCcc------hhhccCC-CCCEEEccCCccccc---------hh-hcCC---CccC
Confidence 2 3467788999999999999875 2344333 799999999999951 11 4444 5799
Q ss_pred eeeCCCCCCCCh
Q 016565 357 LLNLRYDMIGNA 368 (387)
Q Consensus 357 ~L~L~~N~LgD~ 368 (387)
+|+|++|.|.+-
T Consensus 182 ~L~L~~N~i~~l 193 (291)
T 1h6t_A 182 NLYLSKNHISDL 193 (291)
T ss_dssp EEECCSSCCCBC
T ss_pred EEECCCCcCCCC
Confidence 999999999874
No 36
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.14 E-value=4.3e-06 Score=77.95 Aligned_cols=126 Identities=21% Similarity=0.139 Sum_probs=86.2
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~ 276 (387)
.|+.|.++.. ++.... ..+.++|++|+|++|.+.+-. .+.. .+|+.|.|..+.+..
T Consensus 64 ~L~~L~L~~N~i~~~~~-------l~~l~~L~~L~L~~N~l~~l~------~~~~-----~~L~~L~L~~N~l~~----- 120 (263)
T 1xeu_A 64 NLKELHLSHNQISDLSP-------LKDLTKLEELSVNRNRLKNLN------GIPS-----ACLSRLFLDNNELRD----- 120 (263)
T ss_dssp TCCEEECCSSCCCCCGG-------GTTCSSCCEEECCSSCCSCCT------TCCC-----SSCCEEECCSSCCSB-----
T ss_pred CCCEEECCCCccCCChh-------hccCCCCCEEECCCCccCCcC------cccc-----CcccEEEccCCccCC-----
Confidence 4666666643 332211 346788999999999986421 1222 379999999998733
Q ss_pred hhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCC
Q 016565 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (387)
Q Consensus 277 ~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt 356 (387)
+ ..+...++|++|||++|.+.+-. .+.... +|++|+|++|.|++. ..+... ++|+
T Consensus 121 ----~-~~l~~l~~L~~L~Ls~N~i~~~~------~l~~l~-~L~~L~L~~N~i~~~----------~~l~~l---~~L~ 175 (263)
T 1xeu_A 121 ----T-DSLIHLKNLEILSIRNNKLKSIV------MLGFLS-KLEVLDLHGNEITNT----------GGLTRL---KKVN 175 (263)
T ss_dssp ----S-GGGTTCTTCCEEECTTSCCCBCG------GGGGCT-TCCEEECTTSCCCBC----------TTSTTC---CCCC
T ss_pred ----C-hhhcCcccccEEECCCCcCCCCh------HHccCC-CCCEEECCCCcCcch----------HHhccC---CCCC
Confidence 2 23677889999999999998752 343333 799999999999851 233444 5799
Q ss_pred eeeCCCCCCCChHHH
Q 016565 357 LLNLRYDMIGNAVSL 371 (387)
Q Consensus 357 ~L~L~~N~LgD~GVk 371 (387)
.|+|++|.+.+.++.
T Consensus 176 ~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 176 WIDLTGQKCVNEPVK 190 (263)
T ss_dssp EEEEEEEEEECCCEE
T ss_pred EEeCCCCcccCCccc
Confidence 999999998776543
No 37
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.12 E-value=2.2e-06 Score=78.51 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=71.4
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..-.. +.+. ...+|++|.|..+.+.. -. ..++...++|++|+|++|.|.
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~----~~~~----~l~~L~~L~L~~N~l~~-~~-------~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPL----GVFD----HLTQLDKLYLGGNQLKS-LP-------SGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCT----TTTT----TCTTCCEEECCSSCCCC-CC-------TTTTTTCTTCCEEECCSSCCC
T ss_pred cCCcCCEEECCCCcccccCh----hHhc----ccCCCCEEEcCCCcCCC-cC-------hhHhccCCcccEEECcCCcCC
Confidence 55788888888888752211 0111 12368888888888732 11 123455678888888888886
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
.-.... +.. --+|++|+|++|.|++. ...++... ++|+.|+|++|++.-.
T Consensus 145 ~~~~~~----~~~-l~~L~~L~L~~N~l~~~--------~~~~~~~l---~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 145 SIPAGA----FDK-LTNLQTLSLSTNQLQSV--------PHGAFDRL---GKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTT----TTT-CTTCCEEECCSSCCSCC--------CTTTTTTC---TTCCEEECCSCCBCTT
T ss_pred ccCHHH----cCc-CcCCCEEECCCCcCCcc--------CHHHHhCC---CCCCEEEeeCCceeCC
Confidence 543321 222 22688888888888841 11234444 4699999999999654
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.10 E-value=9.1e-06 Score=77.19 Aligned_cols=107 Identities=16% Similarity=0.251 Sum_probs=65.4
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+.+-. .+.. ..+|+.|.|..+.+.. +.. +...++|++|+|++|.+.
T Consensus 105 ~l~~L~~L~l~~n~l~~~~------~l~~----l~~L~~L~l~~n~l~~---------~~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVT------PLAG----LSNLQVLYLDLNQITN---------ISP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp TCTTCCEEECTTSCCCCCG------GGTT----CTTCCEEECCSSCCCC---------CGG-GGGCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCCCCCch------hhcC----CCCCCEEECCCCccCc---------Ccc-ccCCCCccEEEccCCcCC
Confidence 4567777777777765321 1221 2357777777777622 111 556677777777777776
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAV 369 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~G 369 (387)
+-.. +.. -.+|++|+|++|.|++. . .+... ++|++|+|++|.+.+..
T Consensus 165 ~~~~------l~~-l~~L~~L~l~~n~l~~~---------~-~l~~l---~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 165 DLTP------LAN-LSKLTTLKADDNKISDI---------S-PLASL---PNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CCGG------GTT-CTTCCEEECCSSCCCCC---------G-GGGGC---TTCCEEECTTSCCCBCG
T ss_pred CChh------hcC-CCCCCEEECCCCccCcC---------h-hhcCC---CCCCEEEccCCccCccc
Confidence 6443 222 22677777777777741 1 13444 46999999999998754
No 39
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.10 E-value=1.7e-06 Score=78.54 Aligned_cols=112 Identities=17% Similarity=0.122 Sum_probs=78.1
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..-.. .++. ...+|++|.|..+.+.. ....++...++|++|+|++|.|.
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~----~~~~----~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEE----GAFE----GASGVNEILLTSNRLEN--------VQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp GCTTCCEEECCSSCCCEECT----TTTT----TCTTCCEEECCSSCCCC--------CCGGGGTTCSSCCEEECTTSCCC
T ss_pred cCCCCCEEECCCCcCCEECH----HHhC----CCCCCCEEECCCCccCc--------cCHhHhcCCcCCCEEECCCCcCC
Confidence 55789999999999863211 0111 23479999999999843 12234667899999999999997
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
...... +.. --+|++|+|++|+|++. ...++... ++|+.|+|++|++.
T Consensus 119 ~~~~~~----~~~-l~~L~~L~L~~N~l~~~--------~~~~~~~l---~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 119 CVGNDS----FIG-LSSVRLLSLYDNQITTV--------APGAFDTL---HSLSTLNLLANPFN 166 (220)
T ss_dssp CBCTTS----STT-CTTCSEEECTTSCCCCB--------CTTTTTTC---TTCCEEECCSCCEE
T ss_pred eECHhH----cCC-CccCCEEECCCCcCCEE--------CHHHhcCC---CCCCEEEecCcCCc
Confidence 654322 222 23799999999999952 12334444 57999999999985
No 40
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.08 E-value=2.4e-06 Score=77.85 Aligned_cols=132 Identities=14% Similarity=0.011 Sum_probs=83.1
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~ 276 (387)
.++.|.++.. ++...- .++ .+.++|++|+|++|.+..-.. +.+. ...+|+.|.|..+.+.. -
T Consensus 41 ~L~~L~Ls~n~i~~~~~----~~~-~~l~~L~~L~L~~N~l~~i~~----~~~~----~l~~L~~L~Ls~N~l~~-l--- 103 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEP----GVF-DSLINLKELYLGSNQLGALPV----GVFD----SLTQLTVLDLGTNQLTV-L--- 103 (229)
T ss_dssp TCSEEECCSSCCCCCCT----TTT-TTCTTCCEEECCSSCCCCCCT----TTTT----TCTTCCEEECCSSCCCC-C---
T ss_pred CCCEEEcCCCccCccCH----HHh-hCccCCcEEECCCCCCCCcCh----hhcc----cCCCcCEEECCCCcCCc-c---
Confidence 4666766643 332111 122 356789999999999752210 0111 12378999999988743 1
Q ss_pred hhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCC
Q 016565 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (387)
Q Consensus 277 ~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt 356 (387)
...++...++|++|+|++|.|..-. .++..- -+|++|+|++|+|++. ...++... ++|+
T Consensus 104 ----~~~~~~~l~~L~~L~Ls~N~l~~lp-----~~~~~l-~~L~~L~L~~N~l~~~--------~~~~~~~l---~~L~ 162 (229)
T 3e6j_A 104 ----PSAVFDRLVHLKELFMCCNKLTELP-----RGIERL-THLTHLALDQNQLKSI--------PHGAFDRL---SSLT 162 (229)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCCSCC-----TTGGGC-TTCSEEECCSSCCCCC--------CTTTTTTC---TTCC
T ss_pred ----ChhHhCcchhhCeEeccCCcccccC-----cccccC-CCCCEEECCCCcCCcc--------CHHHHhCC---CCCC
Confidence 1223566789999999999997321 123222 3799999999999941 11334444 5799
Q ss_pred eeeCCCCCCCC
Q 016565 357 LLNLRYDMIGN 367 (387)
Q Consensus 357 ~L~L~~N~LgD 367 (387)
.|+|++|++.-
T Consensus 163 ~L~l~~N~~~c 173 (229)
T 3e6j_A 163 HAYLFGNPWDC 173 (229)
T ss_dssp EEECTTSCBCT
T ss_pred EEEeeCCCccC
Confidence 99999999873
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.07 E-value=4.3e-06 Score=82.12 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=22.9
Q ss_pred hcCCCCceeeCCCCCCCchhHHHHHHHh
Q 016565 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSL 313 (387)
Q Consensus 286 ~~n~sL~~LdLs~N~L~D~GvklLC~~L 313 (387)
...++|++|||++|.+...+...++..+
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cccceeeeEecCCCcccccchhhhhccc
Confidence 3457899999999999998888888654
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.05 E-value=1.3e-05 Score=76.14 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=70.8
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCC
Q 016565 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (387)
Q Consensus 222 ~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L 301 (387)
.+.++|++|+|++|.+.+-.. +.. ..+|+.|.|..+.+.. +.. +...++|++|+|++|.+
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~------l~~----l~~L~~L~l~~n~l~~---------~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQITNISP------LAG----LTNLQYLSIGNAQVSD---------LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG------GGG----CTTCCEEECCSSCCCC---------CGG-GTTCTTCCEEECCSSCC
T ss_pred cCCCCCCEEECCCCccCcCcc------ccC----CCCccEEEccCCcCCC---------Chh-hcCCCCCCEEECCCCcc
Confidence 466788888888888764321 221 2368888888887632 222 56677888888888888
Q ss_pred CchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHH
Q 016565 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVS 370 (387)
Q Consensus 302 ~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GV 370 (387)
.+-.. +... .+|++|+|++|.|++. . .+... ++|++|+|++|.+.+..+
T Consensus 186 ~~~~~------l~~l-~~L~~L~L~~N~l~~~---------~-~l~~l---~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 186 SDISP------LASL-PNLIEVHLKNNQISDV---------S-PLANT---SNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCCGG------GGGC-TTCCEEECTTSCCCBC---------G-GGTTC---TTCCEEEEEEEEEECCCE
T ss_pred CcChh------hcCC-CCCCEEEccCCccCcc---------c-cccCC---CCCCEEEccCCeeecCCe
Confidence 76553 3332 3688888888888851 1 23344 468888888888865443
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.05 E-value=1.2e-05 Score=76.16 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=40.7
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|++++|.+.+... +.. ..+|++|.|..+.+.. +.. +...++|++|+|++|.+.
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~------~~~----~~~L~~L~l~~n~l~~---------~~~-~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP------VAN----MTRLNSLKIGNNKITD---------LSP-LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG------GGG----CTTCCEEECCSSCCCC---------CGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCccceeecccCCCCCCch------hhc----CCcCCEEEccCCccCC---------Ccc-hhcCCCCCEEECCCCccC
Confidence 44566666666666543221 111 1246666666665522 111 444556666666666665
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
+-. .+.... +|++|+|++|.|+
T Consensus 257 ~~~------~~~~l~-~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 257 DIN------AVKDLT-KLKMLNVGSNQIS 278 (347)
T ss_dssp CCG------GGTTCT-TCCEEECCSSCCC
T ss_pred CCh------hHhcCC-CcCEEEccCCccC
Confidence 431 222222 5666666666555
No 44
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.05 E-value=2.5e-06 Score=76.10 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=80.4
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
++|++|+|++|.+..-. +.+. ...+|+.|.|..+.+... ....+...++|++|+|++|.|..-
T Consensus 31 ~~l~~L~L~~n~i~~ip-----~~~~----~l~~L~~L~Ls~N~i~~i--------~~~~f~~l~~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-----KELS----NYKHLTLIDLSNNRISTL--------SNQSFSNMTQLLTLILSYNRLRCI 93 (193)
T ss_dssp TTCCEEECCSSCCCSCC-----GGGG----GCTTCCEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCEEECCCCcCchhH-----HHhh----cccCCCEEECCCCcCCEe--------CHhHccCCCCCCEEECCCCccCEe
Confidence 47999999999986211 1222 233799999999998441 123466778999999999999765
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCC-ChHHHHHHh
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG-NAVSLLLCK 375 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg-D~GVk~LCe 375 (387)
.... +.. --+|++|+|++|.|++. ...++... ++|++|+|++|++. |-.++-+-+
T Consensus 94 ~~~~----f~~-l~~L~~L~L~~N~l~~~--------~~~~~~~l---~~L~~L~L~~N~~~C~c~l~~l~~ 149 (193)
T 2wfh_A 94 PPRT----FDG-LKSLRLLSLHGNDISVV--------PEGAFNDL---SALSHLAIGANPLYCDCNMQWLSD 149 (193)
T ss_dssp CTTT----TTT-CTTCCEEECCSSCCCBC--------CTTTTTTC---TTCCEEECCSSCEECSGGGHHHHH
T ss_pred CHHH----hCC-CCCCCEEECCCCCCCee--------ChhhhhcC---ccccEEEeCCCCeecCCcCHHHHH
Confidence 5332 222 23799999999999941 11234444 57999999999985 555544443
No 45
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.04 E-value=2.6e-06 Score=77.30 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=75.6
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..-... ++. ...+|++|.|..+.+.. -. ..++...++|+.|+|++|.|.
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~~~----~~~----~l~~L~~L~Ls~N~l~~-l~-------~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELAPD----AFQ----GLRSLNSLVLYGNKITE-LP-------KSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp TCTTCCEEECCSSCCCEECTT----TTT----TCSSCCEEECCSSCCCC-CC-------TTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCCCcCHH----Hhh----CCcCCCEEECCCCcCCc-cC-------HhHccCCCCCCEEECCCCCCC
Confidence 557899999999998632111 111 23479999999998843 11 123456789999999999997
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
...... +.. --+|++|+|++|.|++. ...++... ++|+.|+|++|++.
T Consensus 118 ~~~~~~----~~~-l~~L~~L~L~~N~l~~~--------~~~~~~~l---~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 118 CLRVDA----FQD-LHNLNLLSLYDNKLQTI--------AKGTFSPL---RAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCTTT----TTT-CTTCCEEECCSSCCSCC--------CTTTTTTC---TTCCEEECCSSCEE
T ss_pred EeCHHH----cCC-CCCCCEEECCCCcCCEE--------CHHHHhCC---CCCCEEEeCCCCcC
Confidence 654332 222 23799999999999951 11234444 56999999999984
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.04 E-value=3.2e-06 Score=78.42 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=7.0
Q ss_pred CCCeeeCCCCCCC
Q 016565 354 SLRLLNLRYDMIG 366 (387)
Q Consensus 354 sLt~L~L~~N~Lg 366 (387)
+|+.|+|++|++.
T Consensus 226 ~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 226 ALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCEE
T ss_pred ccCEEeccCCCcc
Confidence 4555555555553
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.04 E-value=2.5e-06 Score=86.15 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=71.6
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..-.- +++ ....+|++|.|..+.+.. + -..++...++|++|||++|.|.
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~----~~f----~~L~~L~~L~Ls~N~l~~-----l---~~~~f~~L~~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIED----GAY----QSLSHLSTLILTGNPIQS-----L---ALGAFSGLSSLQKLVAVETNLA 137 (635)
T ss_dssp TCTTCCEEECTTCCCCEECT----TTT----TTCTTCCEEECTTCCCCE-----E---CGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCEEECCCCcCCCcCh----hHh----cCCCCCCEEEccCCcCCC-----C---CHHHhcCCCCCCEEECCCCcCC
Confidence 56788888888888752100 001 122378888888888732 1 1123566788888899888886
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
.-.... +.+ --+|++|+|++|.|++ ..+...+... .+|++|+|++|.|..
T Consensus 138 ~l~~~~----~~~-L~~L~~L~Ls~N~l~~-------~~~~~~~~~l---~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 138 SLENFP----IGH-LKTLKELNVAHNLIQS-------FKLPEYFSNL---TNLEHLDLSSNKIQS 187 (635)
T ss_dssp CSTTCC----CTT-CTTCCEEECCSSCCCC-------CCCCGGGGGC---TTCCEEECCSSCCCE
T ss_pred CCChhh----hhc-CcccCeeccccCcccc-------CCCchhhccc---hhhhhhcccCccccc
Confidence 432111 111 1268889999998874 1123344444 469999999999875
No 48
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.03 E-value=4.6e-06 Score=77.48 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=75.8
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..-.. ..+ ....+|++|.|..+.+.. - ....+...++|++|+|++|.+.
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~----~~~----~~l~~L~~L~L~~n~l~~-~-------~~~~~~~l~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPN----GVF----DKLTNLKELVLVENQLQS-L-------PDGVFDKLTNLTYLNLAHNQLQ 146 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCT----TTT----TTCTTCCEEECTTSCCCC-C-------CTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCccCccCh----hHh----cCCcCCCEEECCCCcCCc-c-------CHHHhccCCCCCEEECCCCccC
Confidence 66789999999998762211 011 123478999999888733 1 1123566788999999999987
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
.-.... +. .--+|++|+|++|+|++. ...++... ++|++|+|++|.|.+.
T Consensus 147 ~~~~~~----~~-~l~~L~~L~l~~n~l~~~--------~~~~~~~l---~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 147 SLPKGV----FD-KLTNLTELDLSYNQLQSL--------PEGVFDKL---TQLKDLRLYQNQLKSV 196 (272)
T ss_dssp CCCTTT----TT-TCTTCCEEECCSSCCCCC--------CTTTTTTC---TTCCEEECCSSCCSCC
T ss_pred ccCHHH----hc-cCccCCEEECCCCCcCcc--------CHHHhcCC---ccCCEEECCCCcCCcc
Confidence 544321 22 223799999999999851 11233344 4799999999999854
No 49
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.02 E-value=2.5e-06 Score=75.60 Aligned_cols=110 Identities=18% Similarity=0.152 Sum_probs=76.3
Q ss_pred CCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchh
Q 016565 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (387)
Q Consensus 226 ~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~G 305 (387)
+|++|+|++|.+..-.... .+ ....+|++|.|..+.+... ....+...++|++|+|++|.|....
T Consensus 30 ~l~~L~l~~n~i~~~~~~~---~~----~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~ 94 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDG---LF----GRLPHLVKLELKRNQLTGI--------EPNAFEGASHIQELQLGENKIKEIS 94 (192)
T ss_dssp TCSEEECCSCCCCSBCCSC---SG----GGCTTCCEEECCSSCCCCB--------CTTTTTTCTTCCEEECCSCCCCEEC
T ss_pred CCCEEECCCCcCCccCCcc---cc----ccCCCCCEEECCCCCCCCc--------CHhHcCCcccCCEEECCCCcCCccC
Confidence 7999999999986321100 01 1234799999999998431 1234677889999999999997654
Q ss_pred HHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 306 vklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
... +.+ --+|++|+|++|+|++. ...++... ++|++|+|++|++.
T Consensus 95 ~~~----~~~-l~~L~~L~L~~N~l~~~--------~~~~~~~l---~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 95 NKM----FLG-LHQLKTLNLYDNQISCV--------MPGSFEHL---NSLTSLNLASNPFN 139 (192)
T ss_dssp SSS----STT-CTTCCEEECCSSCCCEE--------CTTSSTTC---TTCCEEECTTCCBC
T ss_pred HHH----hcC-CCCCCEEECCCCcCCee--------CHHHhhcC---CCCCEEEeCCCCcc
Confidence 322 222 23799999999999952 12334444 57999999999987
No 50
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.01 E-value=4.2e-06 Score=74.19 Aligned_cols=133 Identities=14% Similarity=0.026 Sum_probs=83.7
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~ 276 (387)
.+++|.++.. ++... ....++.++|++|+|++|.+..-... .+ ....+|++|.|..+.+.. -
T Consensus 29 ~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~----~~----~~l~~L~~L~Ls~n~l~~-~--- 91 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLP-----NGVFDELTSLTQLYLGGNKLQSLPNG----VF----NKLTSLTYLNLSTNQLQS-L--- 91 (208)
T ss_dssp TCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTT----TT----TTCTTCCEEECCSSCCCC-C---
T ss_pred CCcEEEcCCCccCcCC-----hhhhcccccCcEEECCCCccCccChh----hc----CCCCCcCEEECCCCcCCc-c---
Confidence 4666766643 32211 11123667899999999988632110 01 123479999999988733 1
Q ss_pred hhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCC
Q 016565 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (387)
Q Consensus 277 ~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt 356 (387)
....+...++|++|+|++|.+....... +. .--+|++|+|++|.|++. ...++... ++|+
T Consensus 92 ----~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~-~l~~L~~L~l~~N~l~~~--------~~~~~~~l---~~L~ 151 (208)
T 2o6s_A 92 ----PNGVFDKLTQLKELALNTNQLQSLPDGV----FD-KLTQLKDLRLYQNQLKSV--------PDGVFDRL---TSLQ 151 (208)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCCCCCTTT----TT-TCTTCCEEECCSSCCSCC--------CTTTTTTC---TTCC
T ss_pred ----CHhHhcCccCCCEEEcCCCcCcccCHhH----hc-cCCcCCEEECCCCcccee--------CHHHhccC---CCcc
Confidence 1123566789999999999997543221 22 223799999999999851 11233444 5799
Q ss_pred eeeCCCCCCCC
Q 016565 357 LLNLRYDMIGN 367 (387)
Q Consensus 357 ~L~L~~N~LgD 367 (387)
+|+|++|++..
T Consensus 152 ~L~l~~N~~~~ 162 (208)
T 2o6s_A 152 YIWLHDNPWDC 162 (208)
T ss_dssp EEECCSCCBCC
T ss_pred EEEecCCCeec
Confidence 99999998763
No 51
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.01 E-value=3.9e-06 Score=76.11 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=78.9
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
++|++|+|++|.+..-... ++ ....+|+.|.|..+.+... ....+...++|++|+|++|.|..-
T Consensus 32 ~~l~~L~l~~n~i~~i~~~----~~----~~l~~L~~L~Ls~N~i~~~--------~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG----AF----SPYKKLRRIDLSNNQISEL--------APDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp TTCCEEECCSSCCCEECTT----SS----TTCTTCCEEECCSSCCCEE--------CTTTTTTCSSCCEEECCSSCCCCC
T ss_pred cCCCEEECCCCcCCCcCHh----Hh----hCCCCCCEEECCCCcCCCc--------CHHHhhCCcCCCEEECCCCcCCcc
Confidence 5799999999998632110 11 1234899999999998431 123466779999999999999743
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChH
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAV 369 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~G 369 (387)
... ....--+|++|+|++|.|++. ...++... ++|++|+|++|.|..-.
T Consensus 96 ~~~-----~f~~l~~L~~L~L~~N~l~~~--------~~~~~~~l---~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 96 PKS-----LFEGLFSLQLLLLNANKINCL--------RVDAFQDL---HNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CTT-----TTTTCTTCCEEECCSSCCCCC--------CTTTTTTC---TTCCEEECCSSCCSCCC
T ss_pred CHh-----HccCCCCCCEEECCCCCCCEe--------CHHHcCCC---CCCCEEECCCCcCCEEC
Confidence 321 112223799999999999952 12344444 57999999999998644
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.01 E-value=4.3e-06 Score=81.11 Aligned_cols=120 Identities=21% Similarity=0.178 Sum_probs=67.8
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..-... ++. ...+|+.|.|..+.+... ....+...++|+.|+|++|.|.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~----~~~----~l~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSE----AFV----PVPNLRYLDLSSNHLHTL--------DEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTT----TTT----TCTTCCEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccCEEECCCCcCCccChh----hcc----CCCCCCEEECCCCcCCcC--------CHHHhCCCcCCCEEECCCCccc
Confidence 456788888888876532110 111 223678888887776321 1123555678888888888876
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSL 371 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk 371 (387)
.-.... +..- -+|++|+|++|.|++. -..++.......+|++|+|++|.|..-...
T Consensus 126 ~~~~~~----~~~l-~~L~~L~L~~N~l~~l--------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 126 VVDRNA----FEDM-AQLQKLYLSQNQISRF--------PVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp EECTTT----TTTC-TTCCEEECCSSCCCSC--------CGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred EECHHH----hCCc-ccCCEEECCCCcCCee--------CHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 543222 2222 2688888888888741 011221111224688888888888765443
No 53
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.99 E-value=7.5e-06 Score=74.50 Aligned_cols=110 Identities=14% Similarity=0.070 Sum_probs=53.1
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
++|++|+|++|.+....- ..+. ...+|+.|.|..+.+.. -. ..++...++|+.|||++|.|..-
T Consensus 40 ~~L~~L~Ls~n~i~~~~~----~~~~----~l~~L~~L~L~~N~l~~-i~-------~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEP----GVFD----SLINLKELYLGSNQLGA-LP-------VGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp TTCSEEECCSSCCCCCCT----TTTT----TCTTCCEEECCSSCCCC-CC-------TTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCEEEcCCCccCccCH----HHhh----CccCCcEEECCCCCCCC-cC-------hhhcccCCCcCEEECCCCcCCcc
Confidence 456666666666542110 0111 12256666666666522 11 12234456666666666666533
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
.... ...--+|++|+|++|+|+. +...+... .+|++|+|++|.|..
T Consensus 104 ~~~~-----~~~l~~L~~L~Ls~N~l~~---------lp~~~~~l---~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 104 PSAV-----FDRLVHLKELFMCCNKLTE---------LPRGIERL---THLTHLALDQNQLKS 149 (229)
T ss_dssp CTTT-----TTTCTTCCEEECCSSCCCS---------CCTTGGGC---TTCSEEECCSSCCCC
T ss_pred ChhH-----hCcchhhCeEeccCCcccc---------cCcccccC---CCCCEEECCCCcCCc
Confidence 2111 1112256666666666662 11222333 346666666666653
No 54
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.99 E-value=7.6e-06 Score=74.95 Aligned_cols=135 Identities=14% Similarity=0.115 Sum_probs=87.2
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~ 276 (387)
.+++|.+... ++...- .++ .+.++|++|+|++|.+..... +++ ....+|+.|.|..+.+.. -.
T Consensus 36 ~l~~L~L~~n~l~~~~~----~~~-~~l~~L~~L~L~~n~l~~~~~----~~~----~~l~~L~~L~L~~n~l~~-~~-- 99 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSD----ATF-RGLTKLTWLNLDYNQLQTLSA----GVF----DDLTELGTLGLANNQLAS-LP-- 99 (251)
T ss_dssp TCCEEECTTSCCCCCCT----TTT-TTCTTCCEEECTTSCCCCCCT----TTT----TTCTTCCEEECTTSCCCC-CC--
T ss_pred CCCEEEccCCCcCccCH----hHh-cCcccCCEEECCCCcCCccCH----hHh----ccCCcCCEEECCCCcccc-cC--
Confidence 4666766643 222211 123 366899999999999864211 111 123479999999999843 11
Q ss_pred hhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCC
Q 016565 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (387)
Q Consensus 277 ~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt 356 (387)
..++...++|++|+|++|.|..-... ....--+|++|+|++|+|++. ...++... ++|+
T Consensus 100 -----~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l---~~L~ 158 (251)
T 3m19_A 100 -----LGVFDHLTQLDKLYLGGNQLKSLPSG-----VFDRLTKLKELRLNTNQLQSI--------PAGAFDKL---TNLQ 158 (251)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSCCCCC--------CTTTTTTC---TTCC
T ss_pred -----hhHhcccCCCCEEEcCCCcCCCcChh-----HhccCCcccEEECcCCcCCcc--------CHHHcCcC---cCCC
Confidence 12356678999999999999744322 122233799999999999951 11234444 5799
Q ss_pred eeeCCCCCCCChH
Q 016565 357 LLNLRYDMIGNAV 369 (387)
Q Consensus 357 ~L~L~~N~LgD~G 369 (387)
+|+|++|.|....
T Consensus 159 ~L~L~~N~l~~~~ 171 (251)
T 3m19_A 159 TLSLSTNQLQSVP 171 (251)
T ss_dssp EEECCSSCCSCCC
T ss_pred EEECCCCcCCccC
Confidence 9999999998543
No 55
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.99 E-value=4.7e-06 Score=73.91 Aligned_cols=15 Identities=33% Similarity=0.264 Sum_probs=7.3
Q ss_pred CCCCceeeCCCCCCC
Q 016565 288 GRSLCSLKLRHCHLD 302 (387)
Q Consensus 288 n~sL~~LdLs~N~L~ 302 (387)
.++|++|+|++|.+.
T Consensus 75 l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQ 89 (208)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCcCEEECCCCcCC
Confidence 344555555555443
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.98 E-value=3.4e-06 Score=79.91 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=11.3
Q ss_pred CCCeeeCCCCCCCChHHHHHH
Q 016565 354 SLRLLNLRYDMIGNAVSLLLC 374 (387)
Q Consensus 354 sLt~L~L~~N~LgD~GVk~LC 374 (387)
+|+.|+|++|.|.+-+...+|
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSSS
T ss_pred CcCEEECCCCcCCccChhhcC
Confidence 455666666666554444433
No 57
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.98 E-value=6.7e-06 Score=86.53 Aligned_cols=109 Identities=23% Similarity=0.210 Sum_probs=67.7
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+.+- ..+.. ..+|+.|.|..+.+.. + ..+...++|++|+|++|.|.
T Consensus 107 ~l~~L~~L~Ls~N~l~~l------~~l~~----l~~L~~L~Ls~N~l~~---------l-~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISDI------NGLVH----LPQLESLYLGNNKITD---------I-TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp TCTTCCEEECTTSCCCCC------GGGGG----CTTCSEEECCSSCCCC---------C-GGGGSCTTCSEEECCSSCCC
T ss_pred cCCCCCEEEecCCCCCCC------ccccC----CCccCEEECCCCccCC---------c-hhhcccCCCCEEECcCCcCC
Confidence 556777777777777642 12221 2357777777777632 2 34666777777777777776
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSL 371 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk 371 (387)
+... +... .+|+.|+|++|.|++ + ..+... ++|+.|+|++|.+.+.++.
T Consensus 167 ~~~~------l~~l-~~L~~L~Ls~N~i~~---------l-~~l~~l---~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 167 DIVP------LAGL-TKLQNLYLSKNHISD---------L-RALAGL---KNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp CCGG------GTTC-TTCCEEECCSSCCCB---------C-GGGTTC---TTCSEEECCSEEEECCCCC
T ss_pred Cchh------hccC-CCCCEEECcCCCCCC---------C-hHHccC---CCCCEEEccCCcCcCCccc
Confidence 6433 2222 367777777777774 1 124444 4688888888887765543
No 58
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.98 E-value=2e-05 Score=83.00 Aligned_cols=107 Identities=23% Similarity=0.217 Sum_probs=79.4
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCC
Q 016565 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (387)
Q Consensus 222 ~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L 301 (387)
.+.++|++|+|++|.+.+- ..+. ...+|+.|.|..+.+.. + ..+...++|+.|+|++|.|
T Consensus 84 ~~l~~L~~L~Ls~N~l~~l------~~l~----~l~~L~~L~Ls~N~l~~---------l-~~l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 84 TNLKNLGWLFLDENKIKDL------SSLK----DLKKLKSLSLEHNGISD---------I-NGLVHLPQLESLYLGNNKI 143 (605)
T ss_dssp GGCTTCCEEECCSSCCCCC------TTST----TCTTCCEEECTTSCCCC---------C-GGGGGCTTCSEEECCSSCC
T ss_pred ccCCCCCEEECcCCCCCCC------hhhc----cCCCCCEEEecCCCCCC---------C-ccccCCCccCEEECCCCcc
Confidence 4668999999999998742 1222 34479999999999733 2 2367789999999999999
Q ss_pred CchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 302 ~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
.+- ..+.... +|+.|+|++|.|++. .. +... ++|++|+|++|.|.+-
T Consensus 144 ~~l------~~l~~l~-~L~~L~Ls~N~l~~~---------~~-l~~l---~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 144 TDI------TVLSRLT-KLDTLSLEDNQISDI---------VP-LAGL---TKLQNLYLSKNHISDL 190 (605)
T ss_dssp CCC------GGGGSCT-TCSEEECCSSCCCCC---------GG-GTTC---TTCCEEECCSSCCCBC
T ss_pred CCc------hhhcccC-CCCEEECcCCcCCCc---------hh-hccC---CCCCEEECcCCCCCCC
Confidence 874 2343333 899999999999951 11 4444 5799999999999873
No 59
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.97 E-value=1.1e-05 Score=74.90 Aligned_cols=152 Identities=17% Similarity=0.108 Sum_probs=95.0
Q ss_pred cceEEeeec-ccchhhhhhhcccc-cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcC
Q 016565 175 YARCLRLQN-ALCVEETCQLLRES-KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 251 (387)
Q Consensus 175 ~vr~L~L~~-~L~~~~~~~~~~~C-~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~ 251 (387)
.++.|++.. -+.... ....+ .|++|.++.. ++... .....+.++|++|+|++|.+..-.- ..+
T Consensus 64 ~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~-- 129 (272)
T 3rfs_A 64 NVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLP-----NGVFDKLTNLKELVLVENQLQSLPD----GVF-- 129 (272)
T ss_dssp TCCEEECTTSCCCCCG---GGTTCTTCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECTTSCCCCCCT----TTT--
T ss_pred CCcEEECCCCCCCCch---hhcCCCCCCEEECCCCccCccC-----hhHhcCCcCCCEEECCCCcCCccCH----HHh--
Confidence 567777762 111111 12222 4677766643 33211 1112366899999999999863211 001
Q ss_pred CCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 252 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 252 p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
....+|+.|.|..+.+.. -. ...+...++|+.|+|++|.+.+..... +. .-.+|++|+|++|.|+
T Consensus 130 --~~l~~L~~L~L~~n~l~~-~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 130 --DKLTNLTYLNLAHNQLQS-LP-------KGVFDKLTNLTELDLSYNQLQSLPEGV----FD-KLTQLKDLRLYQNQLK 194 (272)
T ss_dssp --TTCTTCCEEECCSSCCCC-CC-------TTTTTTCTTCCEEECCSSCCCCCCTTT----TT-TCTTCCEEECCSSCCS
T ss_pred --ccCCCCCEEECCCCccCc-cC-------HHHhccCccCCEEECCCCCcCccCHHH----hc-CCccCCEEECCCCcCC
Confidence 123489999999999743 11 123566789999999999998654321 22 2237999999999999
Q ss_pred CcccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 332 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 332 g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
+. ...++... ++|+.|+|++|++.
T Consensus 195 ~~--------~~~~~~~l---~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 195 SV--------PDGVFDRL---TSLQYIWLHDNPWD 218 (272)
T ss_dssp CC--------CTTTTTTC---TTCCEEECCSSCBC
T ss_pred cc--------CHHHHhCC---cCCCEEEccCCCcc
Confidence 52 12334444 57999999999985
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.97 E-value=4.6e-06 Score=77.19 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=43.4
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCccccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~ 337 (387)
+|+.|.|..+.+.. -. ..++...++|++|+|++|.+..-.... +. .--+|++|+|++|.|++.
T Consensus 134 ~L~~L~Ls~n~l~~-~~-------~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~L~~N~l~~~---- 196 (270)
T 2o6q_A 134 KLTYLSLGYNELQS-LP-------KGVFDKLTSLKELRLYNNQLKRVPEGA----FD-KLTELKTLKLDNNQLKRV---- 196 (270)
T ss_dssp TCCEEECCSSCCCC-CC-------TTTTTTCTTCCEEECCSSCCSCCCTTT----TT-TCTTCCEEECCSSCCSCC----
T ss_pred CCCEEECCCCcCCc-cC-------HhHccCCcccceeEecCCcCcEeChhH----hc-cCCCcCEEECCCCcCCcC----
Confidence 55666666555422 11 112344456666666666655433211 11 112466666666666631
Q ss_pred CCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 338 DRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 338 ~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
...++... ++|+.|+|++|++.-
T Consensus 197 ----~~~~~~~l---~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 197 ----PEGAFDSL---EKLKMLQLQENPWDC 219 (270)
T ss_dssp ----CTTTTTTC---TTCCEEECCSSCBCC
T ss_pred ----CHHHhccc---cCCCEEEecCCCeeC
Confidence 11223333 468888888888743
No 61
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.96 E-value=6.6e-06 Score=71.24 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=76.3
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
++|++|+|++|.+..-... .+ ....+|++|.|..+.+.. - ....+...++|++|+|++|.+...
T Consensus 28 ~~l~~L~l~~n~l~~~~~~----~~----~~l~~L~~L~l~~n~l~~-~-------~~~~~~~l~~L~~L~l~~N~l~~~ 91 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHG----VF----DKLTQLTKLSLSQNQIQS-L-------PDGVFDKLTKLTILYLHENKLQSL 91 (177)
T ss_dssp TTCSEEECCSSCCCCCCTT----TT----TTCTTCSEEECCSSCCCC-C-------CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcEEEeCCCcccEeCHH----Hh----cCcccccEEECCCCcceE-e-------ChhHccCCCccCEEECCCCCcccc
Confidence 5899999999998632110 11 123479999999999743 1 112356678999999999999754
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
.... ...--+|++|+|++|.|++. ...++... ++|++|+|++|++.-.
T Consensus 92 ~~~~-----~~~l~~L~~L~l~~N~l~~~--------~~~~~~~l---~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 92 PNGV-----FDKLTQLKELALDTNQLKSV--------PDGIFDRL---TSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CTTT-----TTTCTTCCEEECCSSCCSCC--------CTTTTTTC---TTCCEEECCSSCBCCC
T ss_pred CHHH-----hhCCcccCEEECcCCcceEe--------CHHHhcCC---cccCEEEecCCCeecc
Confidence 3221 12233799999999999941 11233334 5799999999998753
No 62
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.96 E-value=7.2e-06 Score=74.31 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=78.3
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
+.+++|+|++|.+..-... +.+ ....+|+.|.|..+.+... ....+...++|++|+|++|.|...
T Consensus 32 ~~~~~L~L~~N~l~~~~~~---~~~----~~l~~L~~L~L~~N~i~~i--------~~~~~~~l~~L~~L~Ls~N~l~~~ 96 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT---GIF----KKLPQLRKINFSNNKITDI--------EEGAFEGASGVNEILLTSNRLENV 96 (220)
T ss_dssp TTCSEEECCSSCCCEECCC---CCG----GGCTTCCEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCEEEcCCCcCCccCch---hhh----ccCCCCCEEECCCCcCCEE--------CHHHhCCCCCCCEEECCCCccCcc
Confidence 4689999999998632100 001 1234899999999998431 112466778999999999999765
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
.... +.. --+|++|+|++|.|++. ...++... ++|+.|+|++|.|..-
T Consensus 97 ~~~~----~~~-l~~L~~L~Ls~N~l~~~--------~~~~~~~l---~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 97 QHKM----FKG-LESLKTLMLRSNRITCV--------GNDSFIGL---SSVRLLSLYDNQITTV 144 (220)
T ss_dssp CGGG----GTT-CSSCCEEECTTSCCCCB--------CTTSSTTC---TTCSEEECTTSCCCCB
T ss_pred CHhH----hcC-CcCCCEEECCCCcCCeE--------CHhHcCCC---ccCCEEECCCCcCCEE
Confidence 5432 222 23799999999999952 12334444 5799999999999864
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.94 E-value=8.2e-06 Score=75.31 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=63.9
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... ++ ....+|++|.+..+.+..... ..+...++|++|+|++|.+.
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~----~~----~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 74 SLSHLSTLILTGNPIQSLALG----AF----SGLSSLQKLVAVETNLASLEN--------FPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp TCTTCCEEECTTCCCCEECTT----TT----TTCTTCCEEECTTSCCCCSTT--------CCCTTCTTCCEEECCSSCCC
T ss_pred CCcCCCEEECCCCccCccChh----hh----cCCccccEEECCCCCccccCc--------hhcccCCCCCEEECcCCccc
Confidence 556788888888876532211 11 122367777777777633111 12455677888888888776
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCC-eeeCCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR-LLNLRYDMIGN 367 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt-~L~L~~N~LgD 367 (387)
+.++.. .+.+- -+|++|+|++|.|++. ...++...+..+.|. +|+|++|.+.+
T Consensus 138 ~~~l~~---~~~~l-~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 138 SFKLPE---YFSNL-TNLEHLDLSSNKIQSI--------YCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp CCCCCG---GGGGC-TTCCEEECCSSCCCEE--------CGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred eecCch---hhccC-CCCCEEECCCCCCCcC--------CHHHhhhhhhccccceeeecCCCcccc
Confidence 533111 12222 2688888888888741 111222221112343 78888888764
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.93 E-value=1.4e-05 Score=75.53 Aligned_cols=13 Identities=15% Similarity=-0.179 Sum_probs=9.5
Q ss_pred CCCeeeCCCCCCC
Q 016565 354 SLRLLNLRYDMIG 366 (387)
Q Consensus 354 sLt~L~L~~N~Lg 366 (387)
+|++|+|++|++.
T Consensus 196 ~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 196 LLPFAFLHGNPWL 208 (290)
T ss_dssp CCSEEECCSCCBC
T ss_pred cCCeEEeCCCCcc
Confidence 5777777777775
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.93 E-value=4.1e-06 Score=79.19 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=69.5
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+.. +-..-....+|+.|.|..+.+... . ..++...++|++|+|++|.|.
T Consensus 75 ~l~~L~~L~Ls~N~l~~---------l~~~~~~l~~L~~L~l~~N~l~~l-~-------~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQS---------LPLLGQTLPALTVLDVSFNRLTSL-P-------LGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CCTTCCEEECCSSCCSS---------CCCCTTTCTTCCEEECCSSCCCCC-C-------SSTTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCEEECCCCcCCc---------CchhhccCCCCCEEECCCCcCccc-C-------HHHHcCCCCCCEEECCCCCCC
Confidence 55678888888887751 111111233678888888877331 1 123555678888888888886
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
.-... ....--+|+.|+|++|+|++. ...++... ++|++|+|++|.|..
T Consensus 138 ~~~~~-----~~~~l~~L~~L~L~~N~l~~l--------~~~~~~~l---~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 138 TLPPG-----LLTPTPKLEKLSLANNNLTEL--------PAGLLNGL---ENLDTLLLQENSLYT 186 (290)
T ss_dssp CCCTT-----TTTTCTTCCEEECTTSCCSCC--------CTTTTTTC---TTCCEEECCSSCCCC
T ss_pred ccChh-----hcccccCCCEEECCCCcCCcc--------CHHHhcCc---CCCCEEECCCCcCCc
Confidence 43321 122233688888888888841 11233344 579999999999873
No 66
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=6.1e-06 Score=74.69 Aligned_cols=19 Identities=0% Similarity=-0.027 Sum_probs=14.0
Q ss_pred CCCcEEEcccCCCChhHHH
Q 016565 225 ETLASLEFLHCKLSPSFVE 243 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~ 243 (387)
..|++|||+++.+.|.|++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~ 79 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD 79 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG
T ss_pred ceEeEEeCcCCCccHHHHH
Confidence 3678888888777777665
No 67
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.92 E-value=2.2e-05 Score=73.13 Aligned_cols=105 Identities=26% Similarity=0.315 Sum_probs=74.8
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+.+-.. +. ...+|+.|.|..+.+.. -. . +.. ++|++|+|++|.+.
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~------l~----~l~~L~~L~L~~N~l~~-l~--------~-~~~-~~L~~L~L~~N~l~ 119 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP------LK----DLTKLEELSVNRNRLKN-LN--------G-IPS-ACLSRLFLDNNELR 119 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG------GT----TCSSCCEEECCSSCCSC-CT--------T-CCC-SSCCEEECCSSCCS
T ss_pred hCCCCCEEECCCCccCCChh------hc----cCCCCCEEECCCCccCC-cC--------c-ccc-CcccEEEccCCccC
Confidence 55789999999999874322 22 22378999999998732 11 1 222 88999999999998
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
+- ..+.+.. +|+.|+|++|+|++ +. .+... ++|+.|+|++|.+.+.
T Consensus 120 ~~------~~l~~l~-~L~~L~Ls~N~i~~---------~~-~l~~l---~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 120 DT------DSLIHLK-NLEILSIRNNKLKS---------IV-MLGFL---SKLEVLDLHGNEITNT 165 (263)
T ss_dssp BS------GGGTTCT-TCCEEECTTSCCCB---------CG-GGGGC---TTCCEEECTTSCCCBC
T ss_pred CC------hhhcCcc-cccEEECCCCcCCC---------Ch-HHccC---CCCCEEECCCCcCcch
Confidence 74 2344333 79999999999995 11 34455 4799999999999875
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.91 E-value=6.8e-06 Score=76.86 Aligned_cols=114 Identities=19% Similarity=0.100 Sum_probs=63.4
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+.+..+ ...-....+|+.|.|..+.+... ....+...++|++|+|++|.+.
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFL-------PDIFTELRNLTFLDLSQCQLEQL--------SPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEE-------CSCCTTCTTCCEEECTTSCCCEE--------CTTTTTTCTTCCEEECTTSCCS
T ss_pred cCcCCCEEECCCCccccccc-------hhHHhhCcCCCEEECCCCCcCCc--------CHHHhcCCCCCCEEECCCCccC
Confidence 44567777777666542110 00011223677777777766321 1223455677777777777776
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
+.+... +. .-.+|++|+|++|.|++. ....+...+ .+|+.|+|++|++.
T Consensus 213 ~~~~~~----~~-~l~~L~~L~L~~N~l~~~--------~~~~~~~~~--~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 213 SLDTFP----YK-CLNSLQVLDYSLNHIMTS--------KKQELQHFP--SSLAFLNLTQNDFA 261 (306)
T ss_dssp BCCSGG----GT-TCTTCCEEECTTSCCCBC--------SSSSCCCCC--TTCCEEECTTCCEE
T ss_pred ccChhh----cc-CcccCCEeECCCCCCccc--------CHHHHHhhh--ccCCEEEccCCCee
Confidence 544322 11 223677777777777742 112233332 26899999999984
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.91 E-value=5.2e-06 Score=83.25 Aligned_cols=40 Identities=23% Similarity=0.111 Sum_probs=18.3
Q ss_pred CCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 288 n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
.++|++|||++|.+..-.+. ..+..-. +|++|+|++|.|+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p---~~~~~l~-~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPIC---KEFGNMS-QLKFLGLSTTHLE 128 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCC---GGGGGCT-TCCEEEEEESSCC
T ss_pred cCCccEEeccCCccccccch---hhhccCC-cceEEEecCcccc
Confidence 45566666666655431110 0111111 5566666666555
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.91 E-value=1.7e-05 Score=73.38 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=74.0
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCC
Q 016565 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (387)
Q Consensus 222 ~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L 301 (387)
.+.++|++|+|++|.+..-.. +.+. ...+|++|.|..+.+.. - ....+...++|++|+|++|.+
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~----~~~~----~l~~L~~L~l~~n~l~~-~-------~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPI----GVFD----QLVNLAELRLDRNQLKS-L-------PPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCT----TTTT----TCSSCCEEECCSSCCCC-C-------CTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCCEEECCCCcCCcCCH----hHcc----cccCCCEEECCCCccCe-e-------CHHHhCcCcCCCEEECCCCcC
Confidence 356788888888888753211 0111 22378888888887633 1 112355678888888888888
Q ss_pred CchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHH
Q 016565 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVS 370 (387)
Q Consensus 302 ~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GV 370 (387)
..-.... + ..--+|++|+|++|.|++. ...++... ++|++|+|++|.|..-..
T Consensus 146 ~~~~~~~----~-~~l~~L~~L~L~~n~l~~~--------~~~~~~~l---~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 146 QSLPKGV----F-DKLTSLKELRLYNNQLKRV--------PEGAFDKL---TELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CCCCTTT----T-TTCTTCCEEECCSSCCSCC--------CTTTTTTC---TTCCEEECCSSCCSCCCT
T ss_pred CccCHhH----c-cCCcccceeEecCCcCcEe--------ChhHhccC---CCcCEEECCCCcCCcCCH
Confidence 7544322 1 1223788889988888841 11234444 579999999999986443
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.90 E-value=1.1e-05 Score=74.91 Aligned_cols=119 Identities=15% Similarity=0.033 Sum_probs=83.9
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..... +.+. ...+|++|.|..+.+.. - ....+...++|++|+|++|.+.
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~----~~~~----~l~~L~~L~l~~n~l~~-~-------~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGP----GLFR----GLAALQYLYLQDNALQA-L-------PDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCT----TTTT----TCTTCCEEECCSSCCCC-C-------CTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCCEEECCCCcCCEECH----hHhh----CCcCCCEEECCCCcccc-c-------CHhHhccCCCccEEECCCCccc
Confidence 56799999999999863221 1111 23479999999998733 1 1233666789999999999998
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLL 373 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~L 373 (387)
.-....+ .. --+|++|+|++|.|++. ...++... ++|++|+|++|.|.+.....+
T Consensus 167 ~~~~~~~----~~-l~~L~~L~l~~n~l~~~--------~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~ 221 (285)
T 1ozn_A 167 SVPERAF----RG-LHSLDRLLLHQNRVAHV--------HPHAFRDL---GRLMTLYLFANNLSALPTEAL 221 (285)
T ss_dssp EECTTTT----TT-CTTCCEEECCSSCCCEE--------CTTTTTTC---TTCCEEECCSSCCSCCCHHHH
T ss_pred ccCHHHh----cC-ccccCEEECCCCccccc--------CHhHccCc---ccccEeeCCCCcCCcCCHHHc
Confidence 6554322 22 23799999999999952 12334444 579999999999998766544
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.90 E-value=2.8e-06 Score=78.45 Aligned_cols=116 Identities=15% Similarity=0.058 Sum_probs=79.4
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..-... ++. ...+|+.|.|..+.+... ....+...++|++|+|++|.+.
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~----~~~----~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~ 113 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDG----AYQ----SLSHLSTLILTGNPIQSL--------ALGAFSGLSSLQKLVAVETNLA 113 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTT----TTT----TCTTCCEEECTTCCCCEE--------CTTTTTTCTTCCEEECTTSCCC
T ss_pred cccCCcEEECCCCcCCccCHH----Hcc----CCcCCCEEECCCCccCcc--------ChhhhcCCccccEEECCCCCcc
Confidence 567899999999987632111 111 234799999999887331 1134566789999999999987
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAV 369 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~G 369 (387)
..+... +. .--+|++|+|++|.|++ ..+..++... ++|++|+|++|.+.+.+
T Consensus 114 ~~~~~~----~~-~l~~L~~L~l~~n~l~~-------~~l~~~~~~l---~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 114 SLENFP----IG-HLKTLKELNVAHNLIQS-------FKLPEYFSNL---TNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CSTTCC----CT-TCTTCCEEECCSSCCCC-------CCCCGGGGGC---TTCCEEECCSSCCCEEC
T ss_pred ccCchh----cc-cCCCCCEEECcCCccce-------ecCchhhccC---CCCCEEECCCCCCCcCC
Confidence 654321 22 22379999999999984 1233455555 47999999999998743
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.90 E-value=4.2e-06 Score=81.15 Aligned_cols=119 Identities=20% Similarity=0.163 Sum_probs=75.6
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... .+. ...+|+.|.|..+.+.. +.......++|++|||++|.+.
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~----~~~----~l~~L~~L~L~~n~l~~---------~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYH----PFV----KMQRLERLYISNNRLVA---------LNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESG----GGT----TCSSCCEEECCSSCCCE---------EECSSSCCTTCCEEECCSSCCC
T ss_pred CCCCccEEECCCCcCCCcChh----Hcc----ccccCCEEECCCCcCcc---------cCcccCCCCCCCEEECCCCcce
Confidence 556788888888877543211 111 12367888888777632 2122344578888888888876
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHHHhhhc
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLLCKLFF 378 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~LCeaL~ 378 (387)
.-... +. .+ .+|++|+|++|.|++ + .+... ++|+.|+|++|++...+++.+...+.
T Consensus 309 ~~~~~-~~-~l----~~L~~L~L~~N~i~~---------~--~~~~~---~~L~~L~l~~N~~~~~~~~~~~~~~~ 364 (390)
T 3o6n_A 309 HVERN-QP-QF----DRLENLYLDHNSIVT---------L--KLSTH---HTLKNLTLSHNDWDCNSLRALFRNVA 364 (390)
T ss_dssp CCGGG-HH-HH----TTCSEEECCSSCCCC---------C--CCCTT---CCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred ecCcc-cc-cc----CcCCEEECCCCccce---------e--Cchhh---ccCCEEEcCCCCccchhHHHHHHHHH
Confidence 43211 11 22 268888888888874 1 12233 57999999999999999888777653
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.89 E-value=8.2e-06 Score=79.10 Aligned_cols=114 Identities=19% Similarity=0.078 Sum_probs=78.8
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
+++++|+|++|.+..-... .+.. ...+|+.|.|..+.+... ....+...++|++|||++|.|..-
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~----~~~~---~l~~L~~L~L~~N~i~~i--------~~~~~~~l~~L~~L~Ls~N~l~~~ 103 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAE----WTPT---RLTNLHSLLLSHNHLNFI--------SSEAFVPVPNLRYLDLSSNHLHTL 103 (361)
T ss_dssp TTCSEEECCSSCCCEECTT----SSSS---CCTTCCEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCEEECCCCCCCccChh----hhhh---cccccCEEECCCCcCCcc--------ChhhccCCCCCCEEECCCCcCCcC
Confidence 4699999999998642211 1110 234899999999998431 112466778999999999999764
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChH
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAV 369 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~G 369 (387)
.... + ..-.+|++|+|++|.|++. ...++... ++|++|+|++|.|..-.
T Consensus 104 ~~~~----~-~~l~~L~~L~L~~N~i~~~--------~~~~~~~l---~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 104 DEFL----F-SDLQALEVLLLYNNHIVVV--------DRNAFEDM---AQLQKLYLSQNQISRFP 152 (361)
T ss_dssp CTTT----T-TTCTTCCEEECCSSCCCEE--------CTTTTTTC---TTCCEEECCSSCCCSCC
T ss_pred CHHH----h-CCCcCCCEEECCCCcccEE--------CHHHhCCc---ccCCEEECCCCcCCeeC
Confidence 3221 1 2224899999999999941 12344444 57999999999998643
No 75
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.88 E-value=9.9e-06 Score=81.77 Aligned_cols=174 Identities=16% Similarity=0.053 Sum_probs=100.4
Q ss_pred hhhcccccccchhcc-cCccceEEeeec-ccchhhhhhhcccc-cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEc
Q 016565 157 HLACDYSKLSYHCQQ-FGHYARCLRLQN-ALCVEETCQLLRES-KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEF 232 (387)
Q Consensus 157 Cl~~~l~~Ls~~c~~-~~~~vr~L~L~~-~L~~~~~~~~~~~C-~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L 232 (387)
|-...++.| |. ....++.|+|.. -+... ....+..+ +|+.|.++.. ++...- .++. +.++|++|+|
T Consensus 38 c~~~~l~~v----P~~lp~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~----~~f~-~L~~L~~L~L 107 (635)
T 4g8a_A 38 CMELNFYKI----PDNLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIED----GAYQ-SLSHLSTLIL 107 (635)
T ss_dssp CTTSCCSSC----CSSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECT----TTTT-TCTTCCEEEC
T ss_pred CCCCCcCcc----CCCCCcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcCh----hHhc-CCCCCCEEEc
Confidence 555555544 42 233678888872 11111 00112222 5777877754 433221 1333 6789999999
Q ss_pred ccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHH
Q 016565 233 LHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS 312 (387)
Q Consensus 233 ~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~ 312 (387)
++|.|..-.. +++. ...+|++|.|..+.+.... ...+...++|++|||++|.+...........
T Consensus 108 s~N~l~~l~~----~~f~----~L~~L~~L~Ls~N~l~~l~--------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 171 (635)
T 4g8a_A 108 TGNPIQSLAL----GAFS----GLSSLQKLVAVETNLASLE--------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 171 (635)
T ss_dssp TTCCCCEECG----GGGT----TCTTCCEEECTTSCCCCST--------TCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred cCCcCCCCCH----HHhc----CCCCCCEEECCCCcCCCCC--------hhhhhcCcccCeeccccCccccCCCchhhcc
Confidence 9999853211 1111 2237999999999874311 1125667899999999999864322111111
Q ss_pred hccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 313 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 313 Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
| -.|++|+|++|.|++. ....+. .|...+ ..+..++++.|.+..
T Consensus 172 l----~~L~~L~L~~N~l~~~----~~~~l~-~L~~l~--~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 172 L----TNLEHLDLSSNKIQSI----YCTDLR-VLHQMP--LLNLSLDLSLNPMNF 215 (635)
T ss_dssp C----TTCCEEECCSSCCCEE----CGGGGH-HHHTCT--TCCCEEECTTCCCCE
T ss_pred c----hhhhhhcccCcccccc----cccccc-chhhhh--hhhhhhhcccCcccc
Confidence 2 2799999999999951 112222 233332 236689999999864
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.87 E-value=1.8e-05 Score=79.25 Aligned_cols=13 Identities=23% Similarity=0.146 Sum_probs=7.0
Q ss_pred CCCeeeCCCCCCC
Q 016565 354 SLRLLNLRYDMIG 366 (387)
Q Consensus 354 sLt~L~L~~N~Lg 366 (387)
+|+.|+|++|++.
T Consensus 469 ~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 469 SLQKIWLHTNPWD 481 (520)
T ss_dssp TCCEEECCSSCBC
T ss_pred cccEEECcCCCCc
Confidence 4555555555554
No 77
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.86 E-value=7.7e-06 Score=76.48 Aligned_cols=118 Identities=24% Similarity=0.273 Sum_probs=76.1
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... .+. ...+|+.|.|..+.+.+. .+...+...++|++|||++|.+.
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~----~~~----~l~~L~~L~l~~n~l~~~-------~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNG----IFN----GLSSLEVLKMAGNSFQEN-------FLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTT----TTT----TCTTCCEEECTTCEEGGG-------EECSCCTTCTTCCEEECTTSCCC
T ss_pred hccCCCEEECCCCcCCccchh----hcc----cCcCCCEEECCCCccccc-------cchhHHhhCcCCCEEECCCCCcC
Confidence 557888888888886532111 111 123788888888876220 01223556788999999999987
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSL 371 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk 371 (387)
+.+...+ .. --+|++|+|++|.|++. ...++... ++|++|+|++|.+.+.+..
T Consensus 189 ~~~~~~~----~~-l~~L~~L~L~~N~l~~~--------~~~~~~~l---~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 189 QLSPTAF----NS-LSSLQVLNMSHNNFFSL--------DTFPYKCL---NSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EECTTTT----TT-CTTCCEEECTTSCCSBC--------CSGGGTTC---TTCCEEECTTSCCCBCSSS
T ss_pred CcCHHHh----cC-CCCCCEEECCCCccCcc--------ChhhccCc---ccCCEeECCCCCCcccCHH
Confidence 7644322 22 23799999999999841 11233444 5799999999999875543
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.85 E-value=6.2e-06 Score=78.24 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=58.4
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
++|++|+|++|.+.......+... ..+|+.|.|..+.+.. + ......++|++|||++|.+..-
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~-------l~~L~~L~L~~N~l~~---------~-~~~~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAAS-------SDTLEHLNLQYNFIYD---------V-KGQVVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGG-------TTTCCEEECTTSCCCE---------E-ECCCCCTTCCEEECCSSCCCEE
T ss_pred CCCCEEECCCCCCCcccHHHHhhc-------cCcCCEEECCCCcCcc---------c-ccccccccCCEEECCCCcCCcc
Confidence 466666666666654322211111 1156666666666522 1 1122356677777777776543
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
... +... .+|++|+|++|.|++ +...+... ++|++|+|++|++.
T Consensus 207 ~~~-----~~~l-~~L~~L~L~~N~l~~---------l~~~~~~l---~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 207 GPE-----FQSA-AGVTWISLRNNKLVL---------IEKALRFS---QNLEHFDLRGNGFH 250 (317)
T ss_dssp CGG-----GGGG-TTCSEEECTTSCCCE---------ECTTCCCC---TTCCEEECTTCCCB
T ss_pred hhh-----hccc-CcccEEECcCCcccc---------hhhHhhcC---CCCCEEEccCCCcc
Confidence 321 1121 257777777777763 22233343 57999999999998
No 79
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.84 E-value=9.6e-06 Score=85.03 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=74.5
Q ss_pred CCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCc
Q 016565 224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 303 (387)
Q Consensus 224 ~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D 303 (387)
.++|++|+|++|.|.. +.. ...+|+.|.|..+.+.. +.. +. ++|+.|||++|.|..
T Consensus 139 l~~L~~L~Ls~N~l~~--lp~----------~l~~L~~L~Ls~N~L~~---------lp~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 139 PALLEYINADNNQLTM--LPE----------LPTSLEVLSVRNNQLTF---------LPE-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CTTCCEEECCSSCCSC--CCC----------CCTTCCEEECCSSCCSC---------CCC-CC--TTCCEEECCSSCCSS
T ss_pred CccccEEeCCCCccCc--CCC----------cCCCcCEEECCCCCCCC---------cch-hh--CCCCEEECcCCCCCc
Confidence 4678888888888752 110 12378889998888733 111 22 889999999998875
Q ss_pred hhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHHHh
Q 016565 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLLCK 375 (387)
Q Consensus 304 ~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~LCe 375 (387)
-.. +...|.++.+.|++|+|++|.|+. +...+..+ ++|+.|+|++|+|.......++.
T Consensus 195 lp~--~~~~L~~~~~~L~~L~Ls~N~l~~---------lp~~l~~l---~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 LPA--VPVRNHHSEETEIFFRCRENRITH---------IPENILSL---DPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCC--CC--------CCEEEECCSSCCCC---------CCGGGGGS---CTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhh--HHHhhhcccccceEEecCCCccee---------cCHHHhcC---CCCCEEEeeCCcCCCcCHHHHHH
Confidence 333 333455555566999999999983 33333344 47999999999999877777765
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.82 E-value=1.1e-05 Score=76.44 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=21.3
Q ss_pred ccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 319 ~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
+|++|+|++|.|++ +...+... ++|++|+|++|.|.+
T Consensus 192 ~L~~L~Ls~N~l~~---------l~~~~~~l---~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 192 KLKTLDLSSNKLAF---------MGPEFQSA---AGVTWISLRNNKLVL 228 (317)
T ss_dssp TCCEEECCSSCCCE---------ECGGGGGG---TTCSEEECTTSCCCE
T ss_pred cCCEEECCCCcCCc---------chhhhccc---CcccEEECcCCcccc
Confidence 45555555555552 21223333 468888888888873
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.81 E-value=5e-06 Score=84.48 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=31.4
Q ss_pred cccceeecccccccCCCcchhHHHHHHHh-cCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCC
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~-~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g 332 (387)
+|+.|.|..+.+... ....+. ..++|+.|+|++|.+.+.. .+.. -.+|++|+|++|.|++
T Consensus 145 ~L~~L~Ls~N~l~~~--------~~~~l~~~l~~L~~L~Ls~N~l~~~~------~~~~-l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 145 RVQYLDLKLNEIDTV--------NFAELAASSDTLEHLNLQYNFIYDVK------GQVV-FAKLKTLDLSSNKLAF 205 (487)
T ss_dssp SEEEEECTTSCCCEE--------EGGGGGGGTTTCCEEECTTSCCCEEE------CCCC-CTTCCEEECCSSCCCE
T ss_pred CCCEEECCCCCCCCc--------ChHHHhhhCCcccEEecCCCcccccc------cccc-CCCCCEEECCCCCCCC
Confidence 566666666665221 111122 3456666666666665431 1112 2257777777777773
No 82
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.81 E-value=6.4e-06 Score=71.58 Aligned_cols=111 Identities=18% Similarity=0.142 Sum_probs=78.3
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccc-cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH-KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~-~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L 301 (387)
+..+|++|+|++|.+.. + ..+ .... +|+.|.|..+.+.. + ..+...++|+.|+|++|.+
T Consensus 17 ~~~~L~~L~l~~n~l~~--i----~~~----~~~~~~L~~L~Ls~N~l~~---------~-~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV--I----ENL----GATLDQFDAIDFSDNEIRK---------L-DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp CTTSCEEEECTTSCCCS--C----CCG----GGGTTCCSEEECCSSCCCE---------E-CCCCCCSSCCEEECCSSCC
T ss_pred CcCCceEEEeeCCCCch--h----HHh----hhcCCCCCEEECCCCCCCc---------c-cccccCCCCCEEECCCCcc
Confidence 55789999999999873 1 111 1223 79999999999833 2 4467788999999999999
Q ss_pred CchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 302 ~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
..-....+ ..+ -+|++|+|++|.|+.. ..+ ..+... ++|++|+|++|.+.+.
T Consensus 77 ~~~~~~~~-~~l----~~L~~L~L~~N~i~~~------~~~-~~l~~l---~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 77 CRIGEGLD-QAL----PDLTELILTNNSLVEL------GDL-DPLASL---KSLTYLCILRNPVTNK 128 (176)
T ss_dssp CEECSCHH-HHC----TTCCEEECCSCCCCCG------GGG-GGGGGC---TTCCEEECCSSGGGGS
T ss_pred cccCcchh-hcC----CCCCEEECCCCcCCcc------hhh-HhhhcC---CCCCEEEecCCCCCCc
Confidence 86432221 122 2799999999999841 111 144455 4799999999999753
No 83
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.79 E-value=9.7e-05 Score=70.65 Aligned_cols=121 Identities=16% Similarity=0.056 Sum_probs=79.9
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..-. ......+ .+|+.|.|..+.+...... .+ ......+.++.++|++|.+.
T Consensus 196 ~l~~L~~L~l~~n~l~~~~-~~~~~~~-------~~L~~L~L~~n~l~~~~~~----~l-~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 196 SIQNVSHLILHMKQHILLL-EIFVDVT-------SSVECLELRDTDLDTFHFS----EL-STGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp TCSEEEEEEEECSCSTTHH-HHHHHHT-------TTEEEEEEESCBCTTCCCC-----------CCCCCCEEEEESCBCC
T ss_pred ccccCCeecCCCCccccch-hhhhhhc-------ccccEEECCCCcccccccc----cc-ccccccchhhcccccccccc
Confidence 4567888888888875322 1111111 2688888888876332221 12 22345677888889999999
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
+.+...+-+.+.+-. +|++|+|++|+|++ +. ..++... ++|+.|+|++|++.-.
T Consensus 263 ~~~l~~l~~~l~~l~-~L~~L~Ls~N~l~~-i~-------~~~~~~l---~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 263 DESLFQVMKLLNQIS-GLLELEFSRNQLKS-VP-------DGIFDRL---TSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHHHHHTCT-TCCEEECCSSCCCC-CC-------TTTTTTC---TTCCEEECCSSCBCCC
T ss_pred CcchhhhHHHHhccc-CCCEEECCCCCCCc-cC-------HHHHhcC---CCCCEEEeeCCCccCc
Confidence 888888887776655 89999999999993 11 1223344 5799999999998754
No 84
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.77 E-value=4.9e-06 Score=79.03 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=11.7
Q ss_pred CCCeeeCCCCCCCChHHHHHH
Q 016565 354 SLRLLNLRYDMIGNAVSLLLC 374 (387)
Q Consensus 354 sLt~L~L~~N~LgD~GVk~LC 374 (387)
+|+.|+|++|.|.+.+...++
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSS
T ss_pred cCCEEECCCCCCCccChhHcc
Confidence 466666666666655544443
No 85
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.77 E-value=1.2e-05 Score=76.29 Aligned_cols=111 Identities=15% Similarity=0.225 Sum_probs=61.5
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..-... ++. ...+|++|.|..+.+.+ -.. . + .++|++|+|++|.+.
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~----~~~----~l~~L~~L~L~~n~l~~-l~~----~----~--~~~L~~L~l~~n~i~ 136 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEK----AFS----PLRKLQKLYISKNHLVE-IPP----N----L--PSSLVELRIHDNRIR 136 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGG----GST----TCTTCCEEECCSSCCCS-CCS----S----C--CTTCCEEECCSSCCC
T ss_pred CCCCCcEEECCCCccCccCHh----Hhh----CcCCCCEEECCCCcCCc-cCc----c----c--cccCCEEECCCCccC
Confidence 556778888877776532111 111 22367777777777632 111 1 1 167778888887776
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
.-.... +.+ --+|++|+|++|.++... ....++... +|+.|+|++|.+.+
T Consensus 137 ~~~~~~----~~~-l~~L~~L~l~~n~l~~~~------~~~~~~~~l----~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 137 KVPKGV----FSG-LRNMNCIEMGGNPLENSG------FEPGAFDGL----KLNYLRISEAKLTG 186 (332)
T ss_dssp CCCSGG----GSS-CSSCCEEECCSCCCBGGG------SCTTSSCSC----CCSCCBCCSSBCSS
T ss_pred ccCHhH----hCC-CccCCEEECCCCccccCC------CCcccccCC----ccCEEECcCCCCCc
Confidence 543221 222 226778888888776210 011122222 48888888888775
No 86
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.76 E-value=9.2e-06 Score=78.71 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=51.4
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... ++. ...+|+.|.|..+.+.+ -. ..++...++|++|+|++|.+.
T Consensus 91 ~l~~L~~L~L~~n~l~~~~~~----~~~----~l~~L~~L~L~~n~l~~-l~-------~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 91 YAHTIQKLYMGFNAIRYLPPH----VFQ----NVPLLTVLVLERNDLSS-LP-------RGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTT----TTT----TCTTCCEEECCSSCCCC-CC-------TTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCEEECCCCCCCcCCHH----Hhc----CCCCCCEEECCCCccCc-CC-------HHHhcCCCCCcEEECCCCccC
Confidence 556788888887776532111 111 22367777777777632 11 112455677888888888776
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g 332 (387)
...... +... .+|++|+|++|.|++
T Consensus 155 ~~~~~~----~~~l-~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 155 RIEDDT----FQAT-TSLQNLQLSSNRLTH 179 (390)
T ss_dssp BCCTTT----TSSC-TTCCEEECCSSCCSB
T ss_pred ccChhh----ccCC-CCCCEEECCCCcCCc
Confidence 543322 2222 267888888888774
No 87
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.75 E-value=1.3e-05 Score=81.81 Aligned_cols=90 Identities=17% Similarity=0.063 Sum_probs=42.7
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... ++ ....+|++|.|..+.+..... ..+...++|++|+|++|.+.
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~----~~----~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPG----SF----SGLTSLENLVAVETKLASLES--------FPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTT----SS----TTCTTCCEEECTTSCCCCSSS--------SCCTTCTTCCEEECCSSCCC
T ss_pred chhhcCEeECCCCcccccChh----hc----CCcccCCEEEccCCccccccc--------cccCCCCCCCEEeCCCCccc
Confidence 445666666666665421100 01 122356666666666522110 11444566666666666664
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g 332 (387)
.-.+. ..+.+-. +|++|+|++|.|++
T Consensus 142 ~~~lp---~~~~~l~-~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 142 SCKLP---AYFSNLT-NLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCC---GGGGTCT-TCCEEECCSSCCCE
T ss_pred ceech---HhHhhcC-CCCEEEccCCccee
Confidence 31110 0111111 56666666666663
No 88
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.74 E-value=1e-05 Score=80.30 Aligned_cols=61 Identities=20% Similarity=0.146 Sum_probs=33.8
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
+|+.|.|..+.+.. + -...+...++|++|||++|.+...+...+ . .--+|++|+|++|+|+
T Consensus 225 ~L~~L~l~~n~l~~-----~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~-~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 225 NLTSLSITHCNLTA-----V---PYLAVRHLVYLRFLNLSYNPISTIEGSML----H-ELLRLQEIQLVGGQLA 285 (477)
T ss_dssp CCSEEEEESSCCCS-----C---CHHHHTTCTTCCEEECCSSCCCEECTTSC----T-TCTTCCEEECCSSCCS
T ss_pred cccEEECcCCcccc-----c---CHHHhcCccccCeeECCCCcCCccChhhc----c-ccccCCEEECCCCccc
Confidence 56666666666522 1 11235556677777777777765443221 1 1125666666666666
No 89
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.74 E-value=2.3e-05 Score=68.27 Aligned_cols=106 Identities=13% Similarity=0.041 Sum_probs=67.6
Q ss_pred CcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhH
Q 016565 227 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 306 (387)
Q Consensus 227 Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~Gv 306 (387)
.++|++++|.|..- |..-..+|+.|.|..+.+... ....+..-++|+.|||++|.|..-..
T Consensus 11 ~~~l~~s~n~l~~i-----------p~~~~~~l~~L~L~~N~i~~~--------~~~~~~~l~~L~~L~Ls~N~l~~l~~ 71 (170)
T 3g39_A 11 GTTVDCSGKSLASV-----------PTGIPTTTQVLYLYDNQITKL--------EPGVFDRLTQLTRLDLDNNQLTVLPA 71 (170)
T ss_dssp TTEEECTTSCCSSC-----------CSCCCTTCSEEECCSSCCCCC--------CTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CCEEEeCCCCcCcc-----------CccCCCCCcEEEcCCCcCCcc--------ChhhhcCcccCCEEECCCCCcCccCh
Confidence 56777887776521 111112688888888887431 12335667889999999999864332
Q ss_pred HHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 307 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 307 klLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
.. + ..--+|++|+|++|+|++. ...++... ++|++|+|++|++.-
T Consensus 72 ~~----f-~~l~~L~~L~L~~N~l~~~--------~~~~~~~l---~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 72 GV----F-DKLTQLTQLSLNDNQLKSI--------PRGAFDNL---KSLTHIWLLNNPWDC 116 (170)
T ss_dssp TT----T-TTCTTCCEEECCSSCCCCC--------CTTTTTTC---TTCCEEECCSSCBCT
T ss_pred hh----c-cCCCCCCEEECCCCccCEe--------CHHHhcCC---CCCCEEEeCCCCCCC
Confidence 11 1 1222699999999999841 11234444 469999999998864
No 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.73 E-value=3.8e-05 Score=80.00 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=77.7
Q ss_pred CCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchh
Q 016565 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (387)
Q Consensus 226 ~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~G 305 (387)
+|++|+|++|.|.. +. . -....+|+.|.|..+.+.. +-..+...++|+.|||++|.|..
T Consensus 442 ~L~~L~Ls~n~l~~--lp-------~-~~~l~~L~~L~Ls~N~l~~---------lp~~~~~l~~L~~L~Ls~N~l~~-- 500 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LC-------H-LEQLLLVTHLDLSHNRLRA---------LPPALAALRCLEVLQASDNALEN-- 500 (567)
T ss_dssp TCSEEECTTSCCSS--CC-------C-GGGGTTCCEEECCSSCCCC---------CCGGGGGCTTCCEEECCSSCCCC--
T ss_pred CceEEEecCCCCCC--Cc-------C-ccccccCcEeecCcccccc---------cchhhhcCCCCCEEECCCCCCCC--
Confidence 69999999999863 11 1 1233479999999999832 22346778999999999999975
Q ss_pred HHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 306 vklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
+. ++.+.. +|++|+|++|+|++.. ....+... ++|+.|+|++|.|..
T Consensus 501 lp----~l~~l~-~L~~L~Ls~N~l~~~~-------~p~~l~~l---~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 501 VD----GVANLP-RLQELLLCNNRLQQSA-------AIQPLVSC---PRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CG----GGTTCS-SCCEEECCSSCCCSSS-------TTGGGGGC---TTCCEEECTTSGGGG
T ss_pred Cc----ccCCCC-CCcEEECCCCCCCCCC-------CcHHHhcC---CCCCEEEecCCcCCC
Confidence 22 344433 8999999999999621 03445555 479999999999964
No 91
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.72 E-value=3.3e-05 Score=76.41 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=42.6
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCccccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~ 337 (387)
+|+.|.|..+.+... ....+...++|+.|+|++|.+.+..... +.+. -+|++|+|++|+|++.
T Consensus 208 ~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~N~l~~~---- 270 (440)
T 3zyj_A 208 KLDELDLSGNHLSAI--------RPGSFQGLMHLQKLWMIQSQIQVIERNA----FDNL-QSLVEINLAHNNLTLL---- 270 (440)
T ss_dssp SCCEEECTTSCCCEE--------CTTTTTTCTTCCEEECTTCCCCEECTTS----STTC-TTCCEEECTTSCCCCC----
T ss_pred ccCEEECCCCccCcc--------ChhhhccCccCCEEECCCCceeEEChhh----hcCC-CCCCEEECCCCCCCcc----
Confidence 456666665555221 1123444556666666666665443321 1111 2566666666666631
Q ss_pred CCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 338 DRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 338 ~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
...++... ++|+.|+|++|++.
T Consensus 271 ----~~~~~~~l---~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 271 ----PHDLFTPL---HHLERIHLHHNPWN 292 (440)
T ss_dssp ----CTTTTSSC---TTCCEEECCSSCEE
T ss_pred ----ChhHhccc---cCCCEEEcCCCCcc
Confidence 11122333 45777777777763
No 92
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.71 E-value=5.2e-05 Score=76.22 Aligned_cols=123 Identities=12% Similarity=0.086 Sum_probs=64.7
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+.+...... ..+. ...+|+.|.|..+.+.. . ......+...++|++|||++|.+.
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~-~~~~----~l~~L~~L~Ls~N~l~~-----~-~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNS-ACKG----AWPSLQTLVLSQNHLRS-----M-QKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHH-TCTT----SSTTCCEEECTTSCCCC-----H-HHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cCccccEEEccCCccccccccch-hhhh----ccccCcEEEccCCcccc-----c-ccchhhhhcCCCCCEEECCCCCCc
Confidence 34678888888888764332210 0011 12367788888777622 0 001244666777888888888775
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCc---ccccCCc-------chhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGW---LSKYDRS-------GPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~---l~~~~c~-------~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
. +-..+.... +|++|+|++|.|++. .. ...+ .+.... ...++|+.|+|++|.|.
T Consensus 401 ~-----lp~~~~~~~-~L~~L~Ls~N~l~~l~~~~~-~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 401 P-----MPDSCQWPE-KMRFLNLSSTGIRVVKTCIP-QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK 464 (549)
T ss_dssp C-----CCSCCCCCT-TCCEEECTTSCCSCCCTTSC-TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred c-----CChhhcccc-cccEEECCCCCcccccchhc-CCceEEECCCCChhhhc---ccCChhcEEECCCCccC
Confidence 2 111122222 567777777766620 00 0000 011111 12357889999999887
No 93
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.71 E-value=2.4e-05 Score=74.06 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=75.9
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCC
Q 016565 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (387)
Q Consensus 222 ~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L 301 (387)
.+.++|++|+|++|.+..-... ++ ....+|++|.|..+.+.+ -.. .+ .++|++|+|++|.+
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~----~~----~~l~~L~~L~Ls~n~l~~-l~~----~~------~~~L~~L~l~~n~l 133 (330)
T 1xku_A 73 KNLKNLHTLILINNKISKISPG----AF----APLVKLERLYLSKNQLKE-LPE----KM------PKTLQELRVHENEI 133 (330)
T ss_dssp TTCTTCCEEECCSSCCCCBCTT----TT----TTCTTCCEEECCSSCCSB-CCS----SC------CTTCCEEECCSSCC
T ss_pred ccCCCCCEEECCCCcCCeeCHH----Hh----cCCCCCCEEECCCCcCCc-cCh----hh------cccccEEECCCCcc
Confidence 3667899999999987633111 11 123478999999888732 111 11 26899999999999
Q ss_pred CchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 302 ~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
...+...+. . -..|++|+|++|.++.. .....++... ++|++|+|++|.+.+
T Consensus 134 ~~~~~~~~~----~-l~~L~~L~l~~n~l~~~------~~~~~~~~~l---~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 134 TKVRKSVFN----G-LNQMIVVELGTNPLKSS------GIENGAFQGM---KKLSYIRIADTNITT 185 (330)
T ss_dssp CBBCHHHHT----T-CTTCCEEECCSSCCCGG------GBCTTGGGGC---TTCCEEECCSSCCCS
T ss_pred cccCHhHhc----C-CccccEEECCCCcCCcc------CcChhhccCC---CCcCEEECCCCcccc
Confidence 877665443 2 23799999999999731 1122345555 479999999999885
No 94
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.70 E-value=2.1e-05 Score=79.04 Aligned_cols=116 Identities=13% Similarity=0.045 Sum_probs=67.8
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... ++ ....+|++|.|..+.+.. .....+...++|++|||++|.+.
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~----~~----~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGD----AF----YSLGSLEHLDLSDNHLSS--------LSSSWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTT----TT----TTCTTCCEEECTTSCCCS--------CCHHHHTTCTTCCEEECTTCCCS
T ss_pred cCCcccEEECCCCCcCccChh----hc----cccccCCEEECCCCccCc--------cCHHHhccCCCCcEEECCCCccc
Confidence 556788888888876532111 11 122367888888777633 12234566677888888888776
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
.-++.. .+. .--+|++|+|++|.+.+.. -..++... ++|++|+|++|.+...
T Consensus 112 ~~~~~~---~~~-~l~~L~~L~L~~n~~~~~~-------~~~~~~~l---~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 112 TLGVTS---LFP-NLTNLQTLRIGNVETFSEI-------RRIDFAGL---TSLNELEIKALSLRNY 163 (549)
T ss_dssp SSCSSC---SCT-TCTTCCEEEEEESSSCCEE-------CTTTTTTC---CEEEEEEEEETTCCEE
T ss_pred ccchhh---hhh-ccCCccEEECCCCcccccc-------CHhhhhcc---cccCeeeccCCccccc
Confidence 433211 111 1226888888888743211 11234444 4699999999998754
No 95
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.70 E-value=4.7e-06 Score=85.03 Aligned_cols=18 Identities=6% Similarity=0.156 Sum_probs=10.5
Q ss_pred CCCCeeeCCCCCCCChHH
Q 016565 353 QSLRLLNLRYDMIGNAVS 370 (387)
Q Consensus 353 qsLt~L~L~~N~LgD~GV 370 (387)
++|++|+|++|.+.+.+.
T Consensus 500 ~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp TTCCEEECCSSCCCGGGG
T ss_pred cCCCEEECCCCccCcCCh
Confidence 356666666666665443
No 96
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.70 E-value=2.3e-05 Score=77.86 Aligned_cols=110 Identities=18% Similarity=0.099 Sum_probs=57.5
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+.+-. .+. ...+|+.|.|..+.+.. .....+...++|+.|+|++|.+.
T Consensus 194 ~l~~L~~L~L~~n~l~~~~------~~~----~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDMP------NLT----PLVGLEELEMSGNHFPE--------IRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp TCTTCCEEECTTSCCSSCC------CCT----TCTTCCEEECTTSCCSE--------ECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCEEECCCCcccccc------ccc----ccccccEEECcCCcCcc--------cCcccccCccCCCEEEeCCCcCc
Confidence 3456666666666654210 011 22356666666666522 11223455566667777766665
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
...... +.. -.+|+.|+|++|+|++- ...++... ++|+.|+|++|++.
T Consensus 256 ~~~~~~----~~~-l~~L~~L~L~~N~l~~~--------~~~~~~~l---~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 256 LIERNA----FDG-LASLVELNLAHNNLSSL--------PHDLFTPL---RYLVELHLHHNPWN 303 (452)
T ss_dssp EECTTT----TTT-CTTCCEEECCSSCCSCC--------CTTSSTTC---TTCCEEECCSSCEE
T ss_pred eECHHH----hcC-CCCCCEEECCCCcCCcc--------ChHHhccc---cCCCEEEccCCCcC
Confidence 543322 111 12577777777777631 11122333 46888888888764
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.70 E-value=0.0001 Score=73.49 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=31.0
Q ss_pred HhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCC
Q 016565 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDM 364 (387)
Q Consensus 285 L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~ 364 (387)
+...++|++|+|++|.+.+... +. .-.+|++|+|++|.+++ + ..+... ++|+.|+|++|.
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~------~~-~l~~L~~L~l~~n~l~~---------~-~~l~~l---~~L~~L~l~~n~ 364 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDISP------VS-SLTKLQRLFFYNNKVSD---------V-SSLANL---TNINWLSAGHNQ 364 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCGG------GG-GCTTCCEEECCSSCCCC---------C-GGGTTC---TTCCEEECCSSC
T ss_pred hcCCCCCCEEECcCCcCCCchh------hc-cCccCCEeECCCCccCC---------c-hhhccC---CCCCEEeCCCCc
Confidence 3444555555555555544432 11 11245555555555553 1 122222 356666666666
Q ss_pred CCCh
Q 016565 365 IGNA 368 (387)
Q Consensus 365 LgD~ 368 (387)
+.+.
T Consensus 365 l~~~ 368 (466)
T 1o6v_A 365 ISDL 368 (466)
T ss_dssp CCBC
T ss_pred cCcc
Confidence 6543
No 98
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.70 E-value=1.9e-05 Score=75.81 Aligned_cols=66 Identities=21% Similarity=0.062 Sum_probs=32.2
Q ss_pred HhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCC
Q 016565 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDM 364 (387)
Q Consensus 285 L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~ 364 (387)
+...++|++|+|++|.+...... .+... .+|++|+|++|.+.+. +...+... ++|++|+|++|+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~----~~~~l-~~L~~L~L~~n~~~~~--------~p~~~~~l---~~L~~L~L~~n~ 288 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPP----IFGGR-APLKRLILKDCSNLLT--------LPLDIHRL---TQLEKLDLRGCV 288 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCC----CTTCC-CCCCEEECTTCTTCCB--------CCTTGGGC---TTCCEEECTTCT
T ss_pred hccCCCCCEEECcCCcchhhhHH----HhcCC-CCCCEEECCCCCchhh--------cchhhhcC---CCCCEEeCCCCC
Confidence 34445555555555544332111 11111 1455555555555531 22233444 468888888877
Q ss_pred CC
Q 016565 365 IG 366 (387)
Q Consensus 365 Lg 366 (387)
+-
T Consensus 289 ~~ 290 (328)
T 4fcg_A 289 NL 290 (328)
T ss_dssp TC
T ss_pred ch
Confidence 54
No 99
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.69 E-value=1.7e-05 Score=80.81 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=17.9
Q ss_pred CCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 288 n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
.++|++|||++|.+..-.+. ..+.+-. +|++|+|++|.|+
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p---~~~~~l~-~L~~L~L~~n~l~ 159 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVC---KEFGNLT-KLTFLGLSAAKFR 159 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCC---GGGGGCT-TCCEEEEECSBCC
T ss_pred cccCCEEECCCCCccccCch---HhhcccC-cccEEecCCCccc
Confidence 45555555555555432110 0111111 4555555555555
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.69 E-value=1.4e-05 Score=81.13 Aligned_cols=113 Identities=14% Similarity=0.062 Sum_probs=79.7
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+.......+...| .+|+.|.|..+.+... ..+...++|+.|||++|.|.
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l-------~~L~~L~Ls~N~l~~~----------~~~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASS-------DTLEHLNLQYNFIYDV----------KGQVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGT-------TTCCEEECTTSCCCEE----------ECCCCCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhC-------CcccEEecCCCccccc----------cccccCCCCCEEECCCCCCC
Confidence 457899999999998754433222211 2799999999998431 11335789999999999998
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVS 370 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GV 370 (387)
.-... +... .+|+.|+|++|.|++ +...+... ++|+.|+|++|++....+
T Consensus 205 ~~~~~-----~~~l-~~L~~L~Ls~N~l~~---------lp~~l~~l---~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 205 FMGPE-----FQSA-AGVTWISLRNNKLVL---------IEKALRFS---QNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp EECGG-----GGGG-TTCSEEECTTSCCCE---------ECTTCCCC---TTCCEEECTTCCBCHHHH
T ss_pred CCCHh-----HcCC-CCccEEEecCCcCcc---------cchhhccC---CCCCEEEcCCCCCcCcch
Confidence 65432 2222 379999999999995 22233344 479999999999984333
No 101
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.68 E-value=3.5e-05 Score=82.48 Aligned_cols=114 Identities=14% Similarity=0.145 Sum_probs=79.0
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..- -. .+. ...+|+.|.|..+.+.. +-..+...++|+.|||++|.|.
T Consensus 222 ~l~~L~~L~Ls~n~l~~l-~~----~~~----~l~~L~~L~Ls~N~l~~---------lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNI-SA----NIF----KYDFLTRLYLNGNSLTE---------LPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp CCCCCCEEECTTSCCSCC-CG----GGG----GCCSCSCCBCTTSCCSC---------CCGGGGGGTTCCEEECTTSCCS
T ss_pred cCCCCcEEECCCCCCCCC-Ch----hhc----CCCCCCEEEeeCCcCcc---------cChhhhCCCCCCEEeCcCCcCC
Confidence 668999999999997621 01 111 22379999999999842 2233667789999999999997
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLL 372 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~ 372 (387)
.- -..+.+- .+|++|+|++|.|+. +...+... .+|++|+|++|.|...-...
T Consensus 284 ~l-----p~~~~~l-~~L~~L~L~~N~l~~---------lp~~~~~l---~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 284 SL-----PAELGSC-FQLKYFYFFDNMVTT---------LPWEFGNL---CNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp SC-----CSSGGGG-TTCSEEECCSSCCCC---------CCSSTTSC---TTCCCEECTTSCCCSHHHHH
T ss_pred cc-----ChhhcCC-CCCCEEECCCCCCCc---------cChhhhcC---CCccEEeCCCCccCCCChHH
Confidence 21 1122221 269999999999983 22234444 57999999999998654433
No 102
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.68 E-value=1.7e-05 Score=80.89 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=43.8
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... .+. ...+|+.|.|..+.+... .+...+...++|++|||++|.+.
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~----~~~----~l~~L~~L~l~~n~l~~~-------~~~~~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDG----IFL----GLTSLNTLKMAGNSFKDN-------TLSNVFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTT----TTT----TCTTCCEEECTTCEEGGG-------EECSCCTTCTTCCEEECTTSCCC
T ss_pred ccccCCEEECcCCCCCccchh----hhc----CCCCCCEEECCCCcCCCc-------chHHhhccCCCCCEEECCCCcCC
Confidence 556788888887776432111 011 122566666666654210 01122344456666666666665
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
......+. . --+|++|+|++|+|+
T Consensus 487 ~~~~~~~~----~-l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 487 QISWGVFD----T-LHRLQLLNMSHNNLL 510 (606)
T ss_dssp EECTTTTT----T-CTTCCEEECCSSCCS
T ss_pred ccChhhhc----c-cccCCEEECCCCcCC
Confidence 44332211 1 124666666666665
No 103
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.68 E-value=7.8e-06 Score=81.23 Aligned_cols=113 Identities=20% Similarity=0.127 Sum_probs=60.6
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..-... .+ ....+|++|.|..+.+.. .....+...++|++|+|++|.+.
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~----~~----~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLG----VF----TGLSNLTKLDISENKIVI--------LLDYMFQDLYNLKSLEVGDNDLV 141 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTT----SS----TTCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEEECCTTCC
T ss_pred CCccCCEEECCCCcCCccCcc----cc----cCCCCCCEEECCCCcccc--------CChhHccccccCCEEECCCCccc
Confidence 445677777777665421100 00 112356677776666522 11223455566777777777665
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
..+...+. .- -+|++|+|++|.|++. ...++... ++|+.|+|+.|.+..
T Consensus 142 ~~~~~~~~----~l-~~L~~L~l~~n~l~~~--------~~~~l~~l---~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 142 YISHRAFS----GL-NSLEQLTLEKCNLTSI--------PTEALSHL---HGLIVLRLRHLNINA 190 (477)
T ss_dssp EECTTSST----TC-TTCCEEEEESCCCSSC--------CHHHHTTC---TTCCEEEEESCCCCE
T ss_pred eeChhhcc----CC-CCCCEEECCCCcCccc--------ChhHhccc---CCCcEEeCCCCcCcE
Confidence 54432221 11 2577777777777631 12334444 468888888887764
No 104
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=2.2e-05 Score=70.98 Aligned_cols=92 Identities=12% Similarity=0.128 Sum_probs=55.1
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCC-CCCchhHHHHHHHhccCCCccceEeccCcc-cCCccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLS 335 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N-~L~D~GvklLC~~Ll~psc~L~~L~L~~n~-L~g~l~ 335 (387)
+|+.+.|+.|.+.. . .+ ..|...++|++|+|+++ .+.|.|++.|+. +.+...+|+.|+|++|. ||.
T Consensus 62 ~L~~LDLs~~~Itd---~----GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~-~~~~~~~L~~L~Ls~C~~ITD--- 129 (176)
T 3e4g_A 62 KIQAIDATDSCIMS---I----GF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQ-LENLQKSMLEMEIISCGNVTD--- 129 (176)
T ss_dssp CEEEEEEESCCCCG---G----GG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHT-CHHHHHHCCEEEEESCTTCCH---
T ss_pred eEeEEeCcCCCccH---H----HH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHh-cccccCCCCEEEcCCCCcCCH---
Confidence 67777777777633 1 12 33566777888888777 477878777762 11111157778887774 772
Q ss_pred ccCCcchhhhhccCCCCCCCCeeeCCCC-CCCChH
Q 016565 336 KYDRSGPLFSLGAGKSLQSLRLLNLRYD-MIGNAV 369 (387)
Q Consensus 336 ~~~c~~Ls~aL~~n~s~qsLt~L~L~~N-~LgD~G 369 (387)
.+ +. +|... ++|++|+|++- .+.|.|
T Consensus 130 -~G---l~-~L~~~---~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 130 -KG---II-ALHHF---RNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -HH---HH-HGGGC---TTCCEEEEESCTTCCCHH
T ss_pred -HH---HH-HHhcC---CCCCEEECCCCCCCCchH
Confidence 11 21 23333 45777888765 477776
No 105
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.66 E-value=2.6e-05 Score=74.62 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=68.0
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... ++. ...+|++|.|..+.+.. .-..++...++|++|+|++|.+.
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~----~~~----~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~ 137 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEED----SFS----SLGSLEHLDLSYNYLSN--------LSSSWFKPLSSLTFLNLLGNPYK 137 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTT----TTT----TCTTCCEEECCSSCCSS--------CCHHHHTTCTTCSEEECTTCCCS
T ss_pred cCCCCCEEECCCCccCccCHh----hcC----CCCCCCEEECCCCcCCc--------CCHhHhCCCccCCEEECCCCCCc
Confidence 557788888888877532111 111 22368888888877632 11233566678888888888776
Q ss_pred chhHHHHHHHhccCCCccceEeccCcc-cCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~-L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
.-... .....--+|++|+|++|+ +++. ...++... ++|++|+|++|.+.+.
T Consensus 138 ~l~~~----~~~~~l~~L~~L~l~~n~~~~~~--------~~~~~~~l---~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 138 TLGET----SLFSHLTKLQILRVGNMDTFTKI--------QRKDFAGL---TFLEELEIDASDLQSY 189 (353)
T ss_dssp SSCSS----CSCTTCTTCCEEEEEESSSCCEE--------CTTTTTTC---CEEEEEEEEETTCCEE
T ss_pred ccCch----hhhccCCCCcEEECCCCcccccc--------CHHHccCC---CCCCEEECCCCCcCcc
Confidence 43210 011122268888888874 5521 11233333 4699999999988754
No 106
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.66 E-value=0.00011 Score=76.86 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=70.7
Q ss_pred hCCCCCcEEEcccCCCChh---------HHHHHHHHhcCCCc--ccccccceeecccccccCCCcchhHHHHHHHhcCCC
Q 016565 222 QNSETLASLEFLHCKLSPS---------FVEGICRSLCSKRK--RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRS 290 (387)
Q Consensus 222 ~n~~~Lt~L~L~~n~L~d~---------~v~~LCe~L~~p~C--~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~s 290 (387)
++.++|++|+|++|.+... +...+-+.+-..-. ...+|++|.|..|.+.. .+-..+...++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~--------~~p~~l~~l~~ 274 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT--------KLPTFLKALPE 274 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS--------SCCTTTTTCSS
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc--------cChHHHhcCCC
Confidence 3667899999999988752 00011111211111 23478888888887633 12234666788
Q ss_pred CceeeCCCCC-CCc-hhHHHHHHHh---ccCCCccceEeccCcccCCcccccCCcchhh--hhccCCCCCCCCeeeCCCC
Q 016565 291 LCSLKLRHCH-LDR-DFGRMVFSSL---LEASSSLSILDLSGNSIGGWLSKYDRSGPLF--SLGAGKSLQSLRLLNLRYD 363 (387)
Q Consensus 291 L~~LdLs~N~-L~D-~GvklLC~~L---l~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~--aL~~n~s~qsLt~L~L~~N 363 (387)
|++|||++|. +.. .-...+. .| ... .+|++|+|++|+|++ +.. ++... ++|++|+|++|
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l-~~L~~L~L~~n~l~~---------ip~~~~l~~l---~~L~~L~L~~N 340 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQ-ALADAPVG-EKIQIIYIGYNNLKT---------FPVETSLQKM---KKLGMLECLYN 340 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHH-HHHHSGGG-GTCCEEECCSSCCSS---------CCCHHHHTTC---TTCCEEECCSC
T ss_pred CCEEECcCCCCCccccchHHHH-hhhccccC-CCCCEEECCCCcCCc---------cCchhhhccC---CCCCEEeCcCC
Confidence 9999999987 765 2222232 22 111 268888888888873 212 33333 34666666666
Q ss_pred CCC
Q 016565 364 MIG 366 (387)
Q Consensus 364 ~Lg 366 (387)
.+.
T Consensus 341 ~l~ 343 (636)
T 4eco_A 341 QLE 343 (636)
T ss_dssp CCE
T ss_pred cCc
Confidence 654
No 107
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.64 E-value=4.3e-06 Score=74.06 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=53.4
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
++|++|+|++|.+.. +. .+. ...+|+.|.|..+.+.. +...+...++|++|+|++|.+.+-
T Consensus 48 ~~L~~L~ls~n~l~~--l~----~~~----~l~~L~~L~l~~n~l~~---------l~~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 48 KACKHLALSTNNIEK--IS----SLS----GMENLRILSLGRNLIKK---------IENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp TTCSEEECSEEEESC--CC----CHH----HHTTCCEEEEEEEEECS---------CSSHHHHHHHCSEEEEEEEECCCH
T ss_pred CCCCEEECCCCCCcc--cc----ccc----cCCCCCEEECCCCCccc---------ccchhhcCCcCCEEECcCCcCCcC
Confidence 567777777666543 11 110 12256666666666521 111122235667777777766542
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
..+. .+ .+|++|+|++|.|++. ..+ ..+... ++|++|+|++|.+.+
T Consensus 109 --~~~~-~l----~~L~~L~l~~N~i~~~------~~~-~~l~~l---~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 109 --SGIE-KL----VNLRVLYMSNNKITNW------GEI-DKLAAL---DKLEDLLLAGNPLYN 154 (198)
T ss_dssp --HHHH-HH----HHSSEEEESEEECCCH------HHH-HHHTTT---TTCSEEEECSCHHHH
T ss_pred --Cccc-cC----CCCCEEECCCCcCCch------hHH-HHHhcC---CCCCEEEecCCcccc
Confidence 2221 12 1566777777766631 000 133333 356677777766643
No 108
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.63 E-value=2.5e-05 Score=74.89 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=76.2
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHHHhcC---CC--cccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeC
Q 016565 222 QNSETLASLEFLHCKLSPSFVEGICRSLCS---KR--KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKL 296 (387)
Q Consensus 222 ~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~---p~--C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdL 296 (387)
.+.++|++|+|++|.+....-. .+.. +. -...+|+.|.|..+.+.. +-..+...++|++|+|
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~----~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPE----PLASTDASGEHQGLVNLQSLRLEWTGIRS---------LPASIANLQNLKSLKI 213 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCS----CSEEEC-CCCEEESTTCCEEEEEEECCCC---------CCGGGGGCTTCCEEEE
T ss_pred hcCcCCCEEECCCCCCccccCh----hHhhccchhhhccCCCCCEEECcCCCcCc---------chHhhcCCCCCCEEEc
Confidence 3667999999999764321110 0100 00 013479999999999732 2234677889999999
Q ss_pred CCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 297 RHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 297 s~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
++|.+..-. ..+.+-. +|++|+|++|.+.+. +...+... ++|+.|+|++|++-.
T Consensus 214 ~~N~l~~l~-----~~l~~l~-~L~~L~Ls~n~~~~~--------~p~~~~~l---~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 214 RNSPLSALG-----PAIHHLP-KLEELDLRGCTALRN--------YPPIFGGR---APLKRLILKDCSNLL 267 (328)
T ss_dssp ESSCCCCCC-----GGGGGCT-TCCEEECTTCTTCCB--------CCCCTTCC---CCCCEEECTTCTTCC
T ss_pred cCCCCCcCc-----hhhccCC-CCCEEECcCCcchhh--------hHHHhcCC---CCCCEEECCCCCchh
Confidence 999997421 1333333 799999999999852 22334444 579999999987654
No 109
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.63 E-value=2.7e-05 Score=78.35 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=45.8
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... ++. ...+|++|.|..+.+..... ..+...++|++|+|++|.+.
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~----~~~----~l~~L~~L~L~~n~l~~l~~--------~~~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALG----AFS----GLSSLQKLVAVETNLASLEN--------FPIGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTT----TTT----TCTTCCEEECTTSCCCCSTT--------CSCTTCTTCCEEECCSSCCC
T ss_pred CchhCCEEeCcCCcCCccCHh----hhc----CccccccccccccccccCCC--------ccccccccccEEecCCCccc
Confidence 456677777777765421110 111 22367777777666522100 01445567777777777665
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g 332 (387)
.-.+. .++.+- -+|++|+|++|.+++
T Consensus 138 ~~~lp---~~~~~l-~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 138 SFKLP---EYFSNL-TNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCCCC---GGGGGC-TTCCEEECTTSCCCE
T ss_pred eecCh---hhhccc-CCCCEEeCcCCccce
Confidence 41110 011111 157777777777763
No 110
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.62 E-value=7.7e-05 Score=65.39 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=67.5
Q ss_pred cEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHH
Q 016565 228 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 307 (387)
Q Consensus 228 t~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~Gvk 307 (387)
+.+++++|.|..- |..-..+|+.|.|..+.+... ....+...++|+.|+|++|.|..--.
T Consensus 15 ~~l~~~~n~l~~i-----------P~~~~~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~i~~- 74 (174)
T 2r9u_A 15 TLVNCQNIRLASV-----------PAGIPTDKQRLWLNNNQITKL--------EPGVFDHLVNLQQLYFNSNKLTAIPT- 74 (174)
T ss_dssp SEEECCSSCCSSC-----------CSCCCTTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred cEEEeCCCCCCcc-----------CCCcCCCCcEEEeCCCCcccc--------CHHHhcCCcCCCEEECCCCCCCccCh-
Confidence 6777777776421 111112688888888887331 12335667889999999999964221
Q ss_pred HHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 308 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 308 lLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
.....--+|++|+|++|+|++. ...++... ++|++|+|++|++.-.
T Consensus 75 ----~~~~~l~~L~~L~L~~N~l~~l--------~~~~~~~l---~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 75 ----GVFDKLTQLTQLDLNDNHLKSI--------PRGAFDNL---KSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCCC--------CTTTTTTC---TTCSEEECCSSCBCTT
T ss_pred ----hHhCCcchhhEEECCCCcccee--------CHHHhccc---cCCCEEEeCCCCcccc
Confidence 1112223799999999999941 11234444 5799999999998743
No 111
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.62 E-value=9.7e-06 Score=82.72 Aligned_cols=92 Identities=20% Similarity=0.168 Sum_probs=50.6
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... .+. ...+|+.|.|..+.+...... ....+...++|+.|+|++|.+.
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~----~~~----~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQ----LFD----GLPALQHLNLQGNHFPKGNIQ-----KTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTT----TTT----TCTTCCEEECTTCBCGGGEEC-----SSCGGGGCTTCCEEECTTSCCC
T ss_pred CcccCCEEECCCCccCCcCHH----HHh----CCCCCCEEECCCCCCCccccc-----cchhhccCCCccEEECCCCccC
Confidence 556788888888876532211 111 123677777777765220000 0123455677777777777776
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g 332 (387)
..+...+ ..- -+|++|+|++|+|++
T Consensus 490 ~~~~~~~----~~l-~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 490 SIDQHAF----TSL-KMMNHVDLSHNRLTS 514 (606)
T ss_dssp EECTTTT----TTC-TTCCEEECCSSCCCG
T ss_pred ccChhhh----ccc-cCCCEEECCCCccCc
Confidence 5543322 111 257777777777773
No 112
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=0.00013 Score=80.09 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=57.1
Q ss_pred CCCCCcEEEcccCCCChhHH---------HHHHHHhcCCCc--ccccccceeecccccccCCCcchhHHHHHHHhcCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFV---------EGICRSLCSKRK--RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 291 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v---------~~LCe~L~~p~C--~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL 291 (387)
+.++|++|+|++|.+...++ ..+-..+-..-. ...+|+.|.|..|.+.. .+-..+...++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~--------~iP~~l~~L~~L 517 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT--------QLPDFLYDLPEL 517 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC--------SCCGGGGGCSSC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc--------cChHHHhCCCCC
Confidence 56788888888888764100 111111222222 33478888888877533 122446667888
Q ss_pred ceeeCCCCC-CCc-hhHHHHHHHhc---cCCCccceEeccCcccC
Q 016565 292 CSLKLRHCH-LDR-DFGRMVFSSLL---EASSSLSILDLSGNSIG 331 (387)
Q Consensus 292 ~~LdLs~N~-L~D-~GvklLC~~Ll---~psc~L~~L~L~~n~L~ 331 (387)
++|+|++|. +.. .--..+. .|. ....+|++|+|++|.|+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~-~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHH-HHHHCTTTTTTCCEEECCSSCCC
T ss_pred CEEECcCCCCcccccchHHHH-hhhhcccccCCccEEEeeCCcCC
Confidence 888888887 654 2222222 221 22226888888888777
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.62 E-value=0.00015 Score=72.24 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
..++|++|+|++|.+.+-+ .+. ...+|+.|.|..+.+.. +.. +...++|++|+|++|.+.
T Consensus 219 ~l~~L~~L~l~~n~l~~~~------~l~----~l~~L~~L~l~~n~l~~---------~~~-~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDIG------TLA----SLTNLTDLDLANNQISN---------LAP-LSGLTKLTELKLGANQIS 278 (466)
T ss_dssp GCTTCCEEECCSSCCCCCG------GGG----GCTTCSEEECCSSCCCC---------CGG-GTTCTTCSEEECCSSCCC
T ss_pred ccCCCCEEECCCCCcccch------hhh----cCCCCCEEECCCCcccc---------chh-hhcCCCCCEEECCCCccC
Confidence 4467777777777765421 121 12256666666666522 111 445566666666666665
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
+... +.. -..|++|+|++|.++
T Consensus 279 ~~~~------~~~-l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 279 NISP------LAG-LTALTNLELNENQLE 300 (466)
T ss_dssp CCGG------GTT-CTTCSEEECCSSCCS
T ss_pred cccc------ccC-CCccCeEEcCCCccc
Confidence 4432 111 124566666666555
No 114
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.62 E-value=9.4e-06 Score=77.15 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=12.0
Q ss_pred CCCCeeeCCCCCCCC
Q 016565 353 QSLRLLNLRYDMIGN 367 (387)
Q Consensus 353 qsLt~L~L~~N~LgD 367 (387)
++|++|+|++|.|.+
T Consensus 244 ~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYG 258 (313)
T ss_dssp TTCCEEECCSSCCEE
T ss_pred CCCCEEECcCCcccC
Confidence 568888998888864
No 115
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.61 E-value=2e-05 Score=81.53 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=47.6
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... .+ ....+|+.|.|..+.+.. -. ..++...++|++|+|++|.+.
T Consensus 97 ~l~~L~~L~L~~n~l~~~~~~----~~----~~l~~L~~L~L~~n~l~~-l~-------~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYLPPH----VF----QNVPLLTVLVLERNDLSS-LP-------RGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTT----TT----TTCTTCCEEECCSSCCCC-CC-------TTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCCCCCHH----HH----cCCCCCCEEEeeCCCCCC-CC-------HHHhccCCCCCEEEeeCCcCC
Confidence 456677777777776431110 00 112357777777776632 11 112345567777777777775
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g 332 (387)
......+ .. -.+|++|+|++|.|++
T Consensus 161 ~~~~~~~----~~-l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 161 RIEDDTF----QA-TTSLQNLQLSSNRLTH 185 (597)
T ss_dssp BCCTTTT----TT-CTTCCEEECTTSCCSB
T ss_pred CCChhhh----hc-CCcCcEEECcCCCCCC
Confidence 4433221 11 1257777777777774
No 116
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.60 E-value=9.8e-06 Score=77.00 Aligned_cols=65 Identities=25% Similarity=0.265 Sum_probs=39.7
Q ss_pred HhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCC
Q 016565 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDM 364 (387)
Q Consensus 285 L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~ 364 (387)
+...++|+.|+|++|.+...... +... .+|++|+|++|.|+|. +..++... ++|++|+|++|.
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~~-----~~~l-~~L~~L~Ls~N~l~~~--------~p~~l~~l---~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLGK-----VGLS-KNLNGLDLRNNRIYGT--------LPQGLTQL---KFLHSLNVSFNN 279 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGGG-----CCCC-TTCCEEECCSSCCEEC--------CCGGGGGC---TTCCEEECCSSE
T ss_pred HhcCCCCCEEECCCCceeeecCc-----cccc-CCCCEEECcCCcccCc--------CChHHhcC---cCCCEEECcCCc
Confidence 44556666666666666432211 1222 3677777777777742 23345555 469999999998
Q ss_pred CC
Q 016565 365 IG 366 (387)
Q Consensus 365 Lg 366 (387)
|.
T Consensus 280 l~ 281 (313)
T 1ogq_A 280 LC 281 (313)
T ss_dssp EE
T ss_pred cc
Confidence 86
No 117
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.59 E-value=8.2e-05 Score=73.57 Aligned_cols=87 Identities=20% Similarity=0.076 Sum_probs=51.1
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCccccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~ 337 (387)
+|+.|.|..+.+.+ -. .+...++|++|||++|.+.+.....+ ..- -+|++|+|++|.|++.
T Consensus 186 ~L~~L~L~~n~l~~-~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~---- 246 (440)
T 3zyj_A 186 NLRYLNLAMCNLRE-IP---------NLTPLIKLDELDLSGNHLSAIRPGSF----QGL-MHLQKLWMIQSQIQVI---- 246 (440)
T ss_dssp SCCEEECTTSCCSS-CC---------CCTTCSSCCEEECTTSCCCEECTTTT----TTC-TTCCEEECTTCCCCEE----
T ss_pred ccCeecCCCCcCcc-cc---------ccCCCcccCEEECCCCccCccChhhh----ccC-ccCCEEECCCCceeEE----
Confidence 56666666666522 11 14555677777777777665433221 111 2577777777777731
Q ss_pred CCcchhhhhccCCCCCCCCeeeCCCCCCCChHH
Q 016565 338 DRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVS 370 (387)
Q Consensus 338 ~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GV 370 (387)
...++... ++|++|+|++|.|..-..
T Consensus 247 ----~~~~~~~l---~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 247 ----ERNAFDNL---QSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp ----CTTSSTTC---TTCCEEECTTSCCCCCCT
T ss_pred ----ChhhhcCC---CCCCEEECCCCCCCccCh
Confidence 11234444 579999999999986443
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.58 E-value=3.8e-05 Score=68.39 Aligned_cols=85 Identities=24% Similarity=0.212 Sum_probs=63.3
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCccccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~ 337 (387)
+|+.|.|..+.+.. +-..+...++|+.|||++|.|..-.... +..- -.|++|+|++|+|++.
T Consensus 32 ~l~~L~L~~n~i~~---------ip~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l-~~L~~L~Ls~N~l~~i---- 93 (193)
T 2wfh_A 32 DVTELYLDGNQFTL---------VPKELSNYKHLTLIDLSNNRISTLSNQS----FSNM-TQLLTLILSYNRLRCI---- 93 (193)
T ss_dssp TCCEEECCSSCCCS---------CCGGGGGCTTCCEEECCSSCCCCCCTTT----TTTC-TTCCEEECCSSCCCBC----
T ss_pred CCCEEECCCCcCch---------hHHHhhcccCCCEEECCCCcCCEeCHhH----ccCC-CCCCEEECCCCccCEe----
Confidence 79999999999832 2245777899999999999997644322 2222 3799999999999951
Q ss_pred CCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 338 DRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 338 ~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
...++... ++|++|+|++|.|..
T Consensus 94 ----~~~~f~~l---~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 94 ----PPRTFDGL---KSLRLLSLHGNDISV 116 (193)
T ss_dssp ----CTTTTTTC---TTCCEEECCSSCCCB
T ss_pred ----CHHHhCCC---CCCCEEECCCCCCCe
Confidence 12344455 579999999999984
No 119
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.56 E-value=3e-05 Score=77.97 Aligned_cols=87 Identities=24% Similarity=0.245 Sum_probs=47.3
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCccccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~ 337 (387)
+|+.|.|..+.+.+ . .+...+...++|+.|||++|.+.+.+...+. . -.+|++|+|++|.|++.
T Consensus 446 ~L~~L~l~~n~l~~---~----~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~-l~~L~~L~l~~n~l~~~---- 509 (570)
T 2z63_A 446 SLEVLKMAGNSFQE---N----FLPDIFTELRNLTFLDLSQCQLEQLSPTAFN----S-LSSLQVLNMASNQLKSV---- 509 (570)
T ss_dssp TCCEEECTTCEEGG---G----EECSCCTTCTTCCEEECTTSCCCEECTTTTT----T-CTTCCEEECCSSCCSCC----
T ss_pred cCcEEECcCCcCcc---c----cchhhhhcccCCCEEECCCCccccCChhhhh----c-ccCCCEEeCCCCcCCCC----
Confidence 56666666655421 0 0112244456666666666666654433222 1 12577777777776641
Q ss_pred CCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 338 DRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 338 ~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
...++... ++|+.|+|++|++..
T Consensus 510 ----~~~~~~~l---~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 510 ----PDGIFDRL---TSLQKIWLHTNPWDC 532 (570)
T ss_dssp ----CTTTTTTC---TTCCEEECCSSCBCC
T ss_pred ----CHHHhhcc---cCCcEEEecCCcccC
Confidence 11233344 468888888888764
No 120
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.54 E-value=0.00038 Score=70.88 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=22.3
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeeccccc
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF 269 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l 269 (387)
+.++|++|+|.++.+.+..+..+...+..+ +|++|.+..+.+
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~-----~L~~L~l~~n~l 288 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPR-----PVEYLNIYNLTI 288 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHHTTS-----SEEEEEEEEEEE
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhhhcc-----cccEEEEeccEe
Confidence 335666666666666655555555544433 455555554443
No 121
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.52 E-value=0.00014 Score=72.17 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=46.3
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCccccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~ 337 (387)
+|+.|.|..+.+.. -. .+...++|++|||++|.+.+..... +..-. +|++|+|++|.|++.
T Consensus 197 ~L~~L~L~~n~l~~-~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~-~L~~L~L~~n~l~~~---- 257 (452)
T 3zyi_A 197 NLKYLNLGMCNIKD-MP---------NLTPLVGLEELEMSGNHFPEIRPGS----FHGLS-SLKKLWVMNSQVSLI---- 257 (452)
T ss_dssp TCCEEECTTSCCSS-CC---------CCTTCTTCCEEECTTSCCSEECGGG----GTTCT-TCCEEECTTSCCCEE----
T ss_pred CCCEEECCCCcccc-cc---------cccccccccEEECcCCcCcccCccc----ccCcc-CCCEEEeCCCcCceE----
Confidence 45555565555522 11 1344556666666666665443322 11212 566666666666631
Q ss_pred CCcchhhhhccCCCCCCCCeeeCCCCCCCChH
Q 016565 338 DRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAV 369 (387)
Q Consensus 338 ~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~G 369 (387)
...++... ++|++|+|++|.|..-.
T Consensus 258 ----~~~~~~~l---~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 258 ----ERNAFDGL---ASLVELNLAHNNLSSLP 282 (452)
T ss_dssp ----CTTTTTTC---TTCCEEECCSSCCSCCC
T ss_pred ----CHHHhcCC---CCCCEEECCCCcCCccC
Confidence 11233344 57999999999987533
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.51 E-value=7.1e-05 Score=66.18 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=72.2
Q ss_pred cEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHH
Q 016565 228 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 307 (387)
Q Consensus 228 t~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~Gvk 307 (387)
+.+++++|.|.. -|.--..+++.|.|..+.+...... .++...++|++|+|++|.|......
T Consensus 11 ~~l~~s~~~l~~-----------ip~~~~~~l~~L~l~~n~i~~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~ 72 (192)
T 1w8a_A 11 TTVDCTGRGLKE-----------IPRDIPLHTTELLLNDNELGRISSD-------GLFGRLPHLVKLELKRNQLTGIEPN 72 (192)
T ss_dssp TEEECTTSCCSS-----------CCSCCCTTCSEEECCSCCCCSBCCS-------CSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred CEEEcCCCCcCc-----------CccCCCCCCCEEECCCCcCCccCCc-------cccccCCCCCEEECCCCCCCCcCHh
Confidence 678888888752 1111112789999999997331110 1356778999999999999764332
Q ss_pred HHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 308 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 308 lLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
++... -+|++|+|++|+|++. ...++... ++|++|+|++|.|..
T Consensus 73 ----~~~~l-~~L~~L~Ls~N~l~~~--------~~~~~~~l---~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 73 ----AFEGA-SHIQELQLGENKIKEI--------SNKMFLGL---HQLKTLNLYDNQISC 116 (192)
T ss_dssp ----TTTTC-TTCCEEECCSCCCCEE--------CSSSSTTC---TTCCEEECCSSCCCE
T ss_pred ----HcCCc-ccCCEEECCCCcCCcc--------CHHHhcCC---CCCCEEECCCCcCCe
Confidence 22222 3799999999999952 11234444 579999999999985
No 123
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.49 E-value=9.4e-05 Score=76.40 Aligned_cols=115 Identities=21% Similarity=0.188 Sum_probs=57.5
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... .+. ...+|+.|.|..+.+.. +.......++|+.|||++|.+.
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~----~~~----~l~~L~~L~Ls~N~l~~---------l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYH----PFV----KMQRLERLYISNNRLVA---------LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESG----GGT----TCSSCCEEECTTSCCCE---------EECSSSCCTTCCEEECCSSCCC
T ss_pred cCCCCCEEECCCCccCCCCHH----Hhc----CccCCCEEECCCCCCCC---------CCcccccCCCCcEEECCCCCCC
Confidence 345566666666665432111 111 12256666666655522 1111233456666666666665
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHHH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLLC 374 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~LC 374 (387)
.-... + ..+ .+|+.|+|++|.|++ + .+... ++|+.|+|++|++.......+-
T Consensus 315 ~i~~~-~-~~l----~~L~~L~L~~N~l~~---------~--~~~~~---~~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 315 HVERN-Q-PQF----DRLENLYLDHNSIVT---------L--KLSTH---HTLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp CCGGG-H-HHH----TTCSEEECCSSCCCC---------C--CCCTT---CCCSEEECCSSCEEHHHHHHHT
T ss_pred ccCcc-c-ccC----CCCCEEECCCCCCCC---------c--Chhhc---CCCCEEEeeCCCCCChhHHHHH
Confidence 22110 1 112 156666666666663 0 12233 4688888888888766555443
No 124
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.49 E-value=4.5e-05 Score=79.06 Aligned_cols=116 Identities=22% Similarity=0.160 Sum_probs=74.9
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..-.. +++ ....+|++|.|..+.+..... ..+...++|++|||++|.+.
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~----~~~----~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSD----KTF----AFCTNLTELHLMSNSIQKIKN--------NPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCT----TTT----TTCTTCSEEECCSSCCCCCCS--------CTTTTCTTCCEEECCSSCCS
T ss_pred cccCcCEEECCCCccCccCh----hhh----ccCCCCCEEECCCCccCccCh--------hHccccCCCCEEECCCCccc
Confidence 45789999999998752110 011 123478999999888733111 23566788999999999886
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhc--cCCCCCCCCeeeCCCCCCCChHH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG--AGKSLQSLRLLNLRYDMIGNAVS 370 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~--~n~s~qsLt~L~L~~N~LgD~GV 370 (387)
..+... +. .--+|++|+|++|.|++. ...++. .+ .+|++|+|+.|.+.+.+.
T Consensus 135 ~~~~~~----~~-~l~~L~~L~L~~n~l~~~--------~~~~~~~~~~---~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 135 STKLGT----QV-QLENLQELLLSNNKIQAL--------KSEELDIFAN---SSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CCCCCS----SS-CCTTCCEEECCSSCCCCB--------CHHHHGGGTT---CEESEEECTTCCCCCBCT
T ss_pred ccCchh----hc-ccccCCEEEccCCccccc--------CHHHhhcccc---ccccEEECCCCcccccCh
Confidence 653322 11 223799999999999851 112222 23 469999999999986543
No 125
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.49 E-value=4.7e-05 Score=82.03 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=70.9
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCC
Q 016565 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (387)
Q Consensus 222 ~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L 301 (387)
++.++|++|+|++|.+....-. ++ ....+|++|.|..+.+...... ..++...++|++|||++|.+
T Consensus 70 ~~L~~L~~L~Ls~N~l~~~~p~----~~----~~l~~L~~L~Ls~n~l~~~~~~------~~~~~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYFLHPD----AF----QGLFHLFELRLYFCGLSDAVLK------DGYFRNLKALTRLDLSKNQI 135 (844)
T ss_dssp SSCTTCCEEECTTCCCCEECTT----SS----CSCSSCCCEECTTCCCSSCCST------TCCCSSCSSCCEEEEESCCC
T ss_pred cCCCCCCEEECCCCcCcccCHh----Hc----cCCcccCEeeCcCCCCCccccc------CccccccCCCCEEECCCCcc
Confidence 3667888888888887532111 11 1334788888888886321110 11255667888888888888
Q ss_pred CchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCCh
Q 016565 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNA 368 (387)
Q Consensus 302 ~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~ 368 (387)
...+.. ..+.+- -+|++|+|++|.+++... ..++. +. + ++|+.|+|+.|.+...
T Consensus 136 ~~~~~~---~~~~~L-~~L~~L~Ls~N~i~~~~~----~~l~~-l~-~---~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 136 RSLYLH---PSFGKL-NSLKSIDFSSNQIFLVCE----HELEP-LQ-G---KTLSFFSLAANSLYSR 189 (844)
T ss_dssp CCCCCC---GGGGTC-SSCCEEEEESSCCCCCCS----GGGHH-HH-H---CSSCCCEECCSBSCCC
T ss_pred cccccc---hhHhhC-CCCCEEECCCCcCCeeCH----HHccc-cc-C---CccceEECCCCccccc
Confidence 654321 112222 268888888888884211 22222 11 1 2588888888888763
No 126
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.41 E-value=0.0002 Score=74.84 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=23.4
Q ss_pred cccceeecccccccCCCcchhHHHHHHHh--cCCCCceeeCCCCCCCc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLS--SGRSLCSLKLRHCHLDR 303 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~--~n~sL~~LdLs~N~L~D 303 (387)
+|+.|.|..+.+.. +...+. ..++|++|||++|.+..
T Consensus 489 ~L~~L~Ls~N~l~~---------lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 489 LLTSIDLRFNKLTK---------LSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp GCCEEECCSSCCCB---------CCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CccEEECcCCcCCc---------cChhhhhccCCCcCEEECCCCCCCC
Confidence 67777777777632 222233 56777778888777753
No 127
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=0.00021 Score=78.54 Aligned_cols=88 Identities=8% Similarity=0.114 Sum_probs=49.5
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCc-ccccccceeecccccccCCCcchhHHHHHHHh--cCCCCceeeCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRK-RIHKIENLSIDISSFIENCPSSVVVELVSFLS--SGRSLCSLKLRHC 299 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C-~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~--~n~sL~~LdLs~N 299 (387)
+.++|++|+|++|.+. ..-..++..+ .+.| .+.+|+.|.|..+.+.. +...+. ..++|+.|||++|
T Consensus 695 ~l~~L~~L~Ls~N~L~-~ip~~~~~~~-~~~l~nl~~L~~L~Ls~N~L~~---------lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 695 TGSPISTIILSNNLMT-SIPENSLKPK-DGNYKNTYLLTTIDLRFNKLTS---------LSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp TTCCCSEEECCSCCCS-CCCTTSSSCT-TSCCTTGGGCCEEECCSSCCCC---------CCGGGSTTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCcCC-ccChHHhccc-cccccccCCccEEECCCCCCcc---------chHHhhhccCCCcCEEEeCCC
Confidence 5567888888888775 1100011000 0111 12278888888888732 223343 6788888999988
Q ss_pred CCCchhHHHHHHHhccCCCccceEeccC
Q 016565 300 HLDRDFGRMVFSSLLEASSSLSILDLSG 327 (387)
Q Consensus 300 ~L~D~GvklLC~~Ll~psc~L~~L~L~~ 327 (387)
.|.. +-..+.+- -+|+.|+|++
T Consensus 764 ~L~~-----lp~~l~~L-~~L~~L~Ls~ 785 (876)
T 4ecn_A 764 CFSS-----FPTQPLNS-SQLKAFGIRH 785 (876)
T ss_dssp CCSS-----CCCGGGGC-TTCCEEECCC
T ss_pred CCCc-----cchhhhcC-CCCCEEECCC
Confidence 8864 11122222 2577777765
No 128
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.36 E-value=0.00012 Score=78.11 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=19.5
Q ss_pred HhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 285 L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
+...++|+.|+|++|.+....... +.+-. +|++|+|++|.++
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~-~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSG----LSNCT-NLNWISLSNNRLT 503 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGG----GGGCT-TCCEEECCSSCCC
T ss_pred HcCCCCceEEEecCCcccCcCCHH----HhcCC-CCCEEEccCCccC
Confidence 344455555555555554322111 11111 4555666666555
No 129
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.34 E-value=0.00033 Score=70.57 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=71.2
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+..- |-....+|+.|.|..+.+.. +. +...++|++|||++|.+.
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-----------~~~~l~~L~~L~Ls~N~l~~---------~~--~~~l~~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-----------DLSQNTNLTYLACDSNKLTN---------LD--VTPLTKLTYLNCDTNKLT 119 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-----------CCTTCTTCSEEECCSSCCSC---------CC--CTTCTTCCEEECCSSCCS
T ss_pred ccCCCCEEEccCCcCCeE-----------ccccCCCCCEEECcCCCCce---------ee--cCCCCcCCEEECCCCcCC
Confidence 567899999999988642 12233478999999888733 21 566788999999999887
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCC-CCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYD-MIGN 367 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N-~LgD 367 (387)
.-. +.+ --+|++|+|++|.|++ + .+... ++|+.|+|+.| .+++
T Consensus 120 ~l~-------~~~-l~~L~~L~l~~N~l~~---------l--~l~~l---~~L~~L~l~~n~~~~~ 163 (457)
T 3bz5_A 120 KLD-------VSQ-NPLLTYLNCARNTLTE---------I--DVSHN---TQLTELDCHLNKKITK 163 (457)
T ss_dssp CCC-------CTT-CTTCCEEECTTSCCSC---------C--CCTTC---TTCCEEECTTCSCCCC
T ss_pred eec-------CCC-CCcCCEEECCCCccce---------e--ccccC---CcCCEEECCCCCcccc
Confidence 532 222 2379999999999985 1 12333 56999999999 5554
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.34 E-value=0.00041 Score=73.30 Aligned_cols=115 Identities=18% Similarity=0.049 Sum_probs=60.2
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
++|++|+|++|.+.. +..... +|+.|.+..+.+.. +.. ..++|+.|+|++|.|..-
T Consensus 181 ~~L~~L~Ls~N~l~~---------l~~~~~---~L~~L~L~~N~l~~---------l~~---~~~~L~~L~Ls~N~L~~l 236 (622)
T 3g06_A 181 SGLQELSVSDNQLAS---------LPTLPS---ELYKLWAYNNRLTS---------LPA---LPSGLKELIVSGNRLTSL 236 (622)
T ss_dssp TTCCEEECCSSCCSC---------CCCCCT---TCCEEECCSSCCSS---------CCC---CCTTCCEEECCSSCCSCC
T ss_pred CCCcEEECCCCCCCC---------CCCccc---hhhEEECcCCcccc---------cCC---CCCCCCEEEccCCccCcC
Confidence 577778888877652 000111 56666666665521 100 124566666666666432
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCC-----------cccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHHHHH
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGG-----------WLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVSLLL 373 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g-----------~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GVk~L 373 (387)
. ..-.+|++|+|++|.|++ .+....-+.+...+... ++|+.|+|++|+|.....+.+
T Consensus 237 p---------~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l---~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 237 P---------VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHL---SSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp C---------CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCGGGGGS---CTTCEEECCSCCCCHHHHHHH
T ss_pred C---------CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCHHHhhc---cccCEEEecCCCCCCcCHHHH
Confidence 1 111245555555555552 00011111233345555 579999999999997666655
Q ss_pred Hh
Q 016565 374 CK 375 (387)
Q Consensus 374 Ce 375 (387)
..
T Consensus 305 ~~ 306 (622)
T 3g06_A 305 RE 306 (622)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.31 E-value=0.00011 Score=63.50 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=71.1
Q ss_pred CcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhH
Q 016565 227 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 306 (387)
Q Consensus 227 Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~Gv 306 (387)
.+.++++++.+..--. ..+ .+|+.|.|..+.+.. - ....+...++|++|+|++|.|..-..
T Consensus 9 ~~~l~~~~~~l~~~p~-------~~~----~~l~~L~l~~n~l~~-~-------~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-------GIP----SSATRLELESNKLQS-L-------PHGVFDKLTQLTKLSLSQNQIQSLPD 69 (177)
T ss_dssp TTEEECCSSCCSSCCT-------TCC----TTCSEEECCSSCCCC-C-------CTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CCEEEecCCCCccCCC-------CCC----CCCcEEEeCCCcccE-e-------CHHHhcCcccccEEECCCCcceEeCh
Confidence 5677777777652110 011 279999999998733 1 12235667899999999999975432
Q ss_pred HHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 307 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 307 klLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
.. +.. --+|++|+|++|.|++. ...++... ++|+.|+|++|.|..
T Consensus 70 ~~----~~~-l~~L~~L~l~~N~l~~~--------~~~~~~~l---~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 70 GV----FDK-LTKLTILYLHENKLQSL--------PNGVFDKL---TQLKELALDTNQLKS 114 (177)
T ss_dssp TT----TTT-CTTCCEEECCSSCCCCC--------CTTTTTTC---TTCCEEECCSSCCSC
T ss_pred hH----ccC-CCccCEEECCCCCcccc--------CHHHhhCC---cccCEEECcCCcceE
Confidence 21 222 23799999999999951 12233444 579999999999984
No 132
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.29 E-value=6.5e-05 Score=80.05 Aligned_cols=112 Identities=24% Similarity=0.299 Sum_probs=74.5
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|+|++|.+...... .+. ...+|+.|.|..+.+... +...+...++|++|||++|.+.
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~----~~~----~l~~L~~L~L~~N~l~~~--------~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQ----ELM----YVKTLETLILDFNDLTGE--------IPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCG----GGG----GCTTCCEEECCSSCCCSC--------CCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCCCEEECCCCcccCcCCH----HHc----CCCCceEEEecCCcccCc--------CCHHHhcCCCCCEEEccCCccC
Confidence 345666666666665422111 111 233788889988887431 2234677899999999999997
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
......+. .-. +|++|+|++|.++|. +...+... ++|+.|+|++|.+.
T Consensus 504 ~~~p~~~~----~l~-~L~~L~L~~N~l~~~--------~p~~l~~l---~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 504 GEIPKWIG----RLE-NLAILKLSNNSFSGN--------IPAELGDC---RSLIWLDLNTNLFN 551 (768)
T ss_dssp SCCCGGGG----GCT-TCCEEECCSSCCEEE--------CCGGGGGC---TTCCEEECCSSEEE
T ss_pred CcCChHHh----cCC-CCCEEECCCCcccCc--------CCHHHcCC---CCCCEEECCCCccC
Confidence 65443322 222 799999999999962 33445555 47999999999875
No 133
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.26 E-value=5e-05 Score=81.83 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=54.7
Q ss_pred CCcEEEcccCCCChhHHHHHHHHhcCCC------------------------------cccccccceeecccccccCCCc
Q 016565 226 TLASLEFLHCKLSPSFVEGICRSLCSKR------------------------------KRIHKIENLSIDISSFIENCPS 275 (387)
Q Consensus 226 ~Lt~L~L~~n~L~d~~v~~LCe~L~~p~------------------------------C~~~~Lq~L~L~~c~l~~~~~~ 275 (387)
+|++|+|++|.+.......+++.+..+. +...+|+.|.|..+.+...
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~--- 281 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL--- 281 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE---
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc---
Confidence 4888888888776666555555443221 0113677777777665321
Q ss_pred chhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 276 ~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
....+...++|+.|+|++|.+.......+ .. -.+|++|+|++|.|+
T Consensus 282 -----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~-l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 282 -----NSRVFETLKDLKVLNLAYNKINKIADEAF----YG-LDNLQVLNLSYNLLG 327 (844)
T ss_dssp -----CSCCSSSCCCCCEEEEESCCCCEECTTTT----TT-CSSCCEEEEESCCCS
T ss_pred -----ChhhhhcCCCCCEEECCCCcCCCCChHHh----cC-CCCCCEEECCCCCCC
Confidence 12234556778888888887765543222 11 226777777777776
No 134
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.26 E-value=0.00057 Score=68.78 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=9.5
Q ss_pred CCCCeeeCCCCCCCC
Q 016565 353 QSLRLLNLRYDMIGN 367 (387)
Q Consensus 353 qsLt~L~L~~N~LgD 367 (387)
++|+.|+|++|.|..
T Consensus 233 ~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTE 247 (457)
T ss_dssp TTCSEEECCSSCCSC
T ss_pred CCCCEEEeeCCcCCC
Confidence 356666666666664
No 135
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.24 E-value=0.00032 Score=72.65 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=12.4
Q ss_pred CCCCeeeCCCCCCCCh
Q 016565 353 QSLRLLNLRYDMIGNA 368 (387)
Q Consensus 353 qsLt~L~L~~N~LgD~ 368 (387)
.+|+.|+|++|.+.+.
T Consensus 272 ~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 272 PQLEYFFLEYNNIQHL 287 (680)
T ss_dssp TTCCEEECCSCCBSEE
T ss_pred ccccEeeCCCCccCcc
Confidence 4688888888888754
No 136
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.23 E-value=0.00014 Score=76.13 Aligned_cols=101 Identities=20% Similarity=0.141 Sum_probs=65.0
Q ss_pred CCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchh
Q 016565 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (387)
Q Consensus 226 ~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~G 305 (387)
+|++|+|++|.+.. + |. ...+|+.|.|..+.+.. + .. ..++|++|+|++|.|..-.
T Consensus 121 ~L~~L~Ls~N~l~~--l---------p~-~l~~L~~L~Ls~N~l~~-----l----p~---~l~~L~~L~Ls~N~L~~lp 176 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM--L---------PE-LPALLEYINADNNQLTM-----L----PE---LPTSLEVLSVRNNQLTFLP 176 (571)
T ss_dssp TCCEEECCSSCCSC--C---------CC-CCTTCCEEECCSSCCSC-----C----CC---CCTTCCEEECCSSCCSCCC
T ss_pred CCCEEECCCCcCCC--C---------CC-cCccccEEeCCCCccCc-----C----CC---cCCCcCEEECCCCCCCCcc
Confidence 79999999998863 1 11 23478999999888732 1 11 2468999999999987643
Q ss_pred HHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 306 vklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
. +. .+|+.|+|++|+|+. +. . +...|... ...|+.|+|++|.|..
T Consensus 177 ~------l~---~~L~~L~Ls~N~L~~-lp----~-~~~~L~~~--~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 177 E------LP---ESLEALDVSTNLLES-LP----A-VPVRNHHS--EETEIFFRCRENRITH 221 (571)
T ss_dssp C------CC---TTCCEEECCSSCCSS-CC----C-CC----------CCEEEECCSSCCCC
T ss_pred h------hh---CCCCEEECcCCCCCc-hh----h-HHHhhhcc--cccceEEecCCCccee
Confidence 3 11 479999999999983 11 0 21112111 1335999999999983
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.11 E-value=0.00037 Score=72.54 Aligned_cols=107 Identities=17% Similarity=0.107 Sum_probs=73.6
Q ss_pred hCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCC
Q 016565 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (387)
Q Consensus 222 ~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L 301 (387)
++.++|++|+|++|.|. ..- ..+. ...+|+.|.|..+.+.. +- .+...++|+.|||++|.|
T Consensus 460 ~~l~~L~~L~Ls~N~l~-~lp----~~~~----~l~~L~~L~Ls~N~l~~---------lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 460 EQLLLVTHLDLSHNRLR-ALP----PALA----ALRCLEVLQASDNALEN---------VD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp GGGTTCCEEECCSSCCC-CCC----GGGG----GCTTCCEEECCSSCCCC---------CG-GGTTCSSCCEEECCSSCC
T ss_pred cccccCcEeecCccccc-ccc----hhhh----cCCCCCEEECCCCCCCC---------Cc-ccCCCCCCcEEECCCCCC
Confidence 35578999999999986 111 1222 23479999999999833 22 477789999999999999
Q ss_pred Cchh-HHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeC
Q 016565 302 DRDF-GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL 360 (387)
Q Consensus 302 ~D~G-vklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L 360 (387)
.... ... +..-. +|++|+|++|.|++.- ..+...+... ++|+.|||
T Consensus 521 ~~~~~p~~----l~~l~-~L~~L~L~~N~l~~~~-----~~~~~l~~~l---p~L~~L~l 567 (567)
T 1dce_A 521 QQSAAIQP----LVSCP-RLVLLNLQGNSLCQEE-----GIQERLAEML---PSVSSILT 567 (567)
T ss_dssp CSSSTTGG----GGGCT-TCCEEECTTSGGGGSS-----SCTTHHHHHC---TTCSEEEC
T ss_pred CCCCCcHH----HhcCC-CCCEEEecCCcCCCCc-----cHHHHHHHHC---cccCccCC
Confidence 7653 232 22222 7999999999999521 2233344445 36888875
No 138
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.11 E-value=0.00052 Score=69.01 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=39.9
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
++|++|+|++|.+..-. ..| .+|++|.|..+.+.. + - .+...++|++|+|++|.+..-
T Consensus 111 ~~L~~L~l~~n~l~~l~--------~~~----~~L~~L~L~~n~l~~-----l----p-~~~~l~~L~~L~l~~N~l~~l 168 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALS--------DLP----PLLEYLGVSNNQLEK-----L----P-ELQNSSFLKIIDVDNNSLKKL 168 (454)
T ss_dssp TTCCEEECCSSCCSCCC--------SCC----TTCCEEECCSSCCSS-----C----C-CCTTCTTCCEEECCSSCCSCC
T ss_pred CCCcEEECCCCccCccc--------CCC----CCCCEEECcCCCCCC-----C----c-ccCCCCCCCEEECCCCcCccc
Confidence 35666666666654210 001 156666666666521 1 1 145556666666666666431
Q ss_pred hHHHHHHHhccCCCccceEeccCcccCC
Q 016565 305 FGRMVFSSLLEASSSLSILDLSGNSIGG 332 (387)
Q Consensus 305 GvklLC~~Ll~psc~L~~L~L~~n~L~g 332 (387)
.. .+ .+|++|+|++|.+++
T Consensus 169 p~--------~~-~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 169 PD--------LP-PSLEFIAAGNNQLEE 187 (454)
T ss_dssp CC--------CC-TTCCEEECCSSCCSS
T ss_pred CC--------Cc-ccccEEECcCCcCCc
Confidence 10 01 256666666666663
No 139
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.03 E-value=0.00087 Score=70.80 Aligned_cols=93 Identities=16% Similarity=0.005 Sum_probs=58.1
Q ss_pred cccccccccc-ccHHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcc
Q 016565 198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (387)
Q Consensus 198 ~Lq~L~l~~~-ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~ 276 (387)
+|++|.+++. ++... ...++|++|+|++|.+..- .. ...+|++|.|..+.+.. -.
T Consensus 82 ~L~~L~Ls~N~l~~lp---------~~l~~L~~L~Ls~N~l~~l---------~~---~l~~L~~L~L~~N~l~~-lp-- 137 (622)
T 3g06_A 82 ELRTLEVSGNQLTSLP---------VLPPGLLELSIFSNPLTHL---------PA---LPSGLCKLWIFGNQLTS-LP-- 137 (622)
T ss_dssp TCCEEEECSCCCSCCC---------CCCTTCCEEEECSCCCCCC---------CC---CCTTCCEEECCSSCCSC-CC--
T ss_pred CCCEEEcCCCcCCcCC---------CCCCCCCEEECcCCcCCCC---------CC---CCCCcCEEECCCCCCCc-CC--
Confidence 4666766643 33211 1456888888888887531 11 12368888888888733 11
Q ss_pred hhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCC
Q 016565 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (387)
Q Consensus 277 ~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g 332 (387)
. .-++|++|+|++|.+..-.. .+ .+|+.|+|++|.|++
T Consensus 138 ------~---~l~~L~~L~Ls~N~l~~l~~--------~~-~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 138 ------V---LPPGLQELSVSDNQLASLPA--------LP-SELCKLWAYNNQLTS 175 (622)
T ss_dssp ------C---CCTTCCEEECCSSCCSCCCC--------CC-TTCCEEECCSSCCSC
T ss_pred ------C---CCCCCCEEECcCCcCCCcCC--------cc-CCCCEEECCCCCCCC
Confidence 1 12789999999998864210 12 368888888888884
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.94 E-value=0.00034 Score=74.85 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=58.4
Q ss_pred ccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccc
Q 016565 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (387)
Q Consensus 257 ~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~ 336 (387)
.+|+.|.|..+.+.. +...+...++|++|+|++|.|..- -..+..- .+|++|+|++|.|+.
T Consensus 224 ~~L~~L~Ls~n~l~~---------l~~~~~~l~~L~~L~Ls~N~l~~l-----p~~~~~l-~~L~~L~Ls~N~l~~---- 284 (727)
T 4b8c_D 224 QLWHALDLSNLQIFN---------ISANIFKYDFLTRLYLNGNSLTEL-----PAEIKNL-SNLRVLDLSHNRLTS---- 284 (727)
T ss_dssp CCCCEEECTTSCCSC---------CCGGGGGCCSCSCCBCTTSCCSCC-----CGGGGGG-TTCCEEECTTSCCSS----
T ss_pred CCCcEEECCCCCCCC---------CChhhcCCCCCCEEEeeCCcCccc-----ChhhhCC-CCCCEEeCcCCcCCc----
Confidence 368999999988732 222244678999999999999621 1122222 279999999999993
Q ss_pred cCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 337 YDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 337 ~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
+...+... .+|++|+|++|.|+.
T Consensus 285 -----lp~~~~~l---~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 285 -----LPAELGSC---FQLKYFYFFDNMVTT 307 (727)
T ss_dssp -----CCSSGGGG---TTCSEEECCSSCCCC
T ss_pred -----cChhhcCC---CCCCEEECCCCCCCc
Confidence 22233444 469999999999973
No 141
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.91 E-value=0.00097 Score=67.07 Aligned_cols=78 Identities=17% Similarity=0.078 Sum_probs=42.8
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
+.++|++|++++|.+.. +. .-.. +|+.|.|..+.+.. +. .+...++|++|+|++|.+.
T Consensus 151 ~l~~L~~L~l~~N~l~~--lp-------~~~~---~L~~L~L~~n~l~~---------l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKK--LP-------DLPP---SLEFIAAGNNQLEE---------LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp TCTTCCEEECCSSCCSC--CC-------CCCT---TCCEEECCSSCCSS---------CC-CCTTCTTCCEEECCSSCCS
T ss_pred CCCCCCEEECCCCcCcc--cC-------CCcc---cccEEECcCCcCCc---------Cc-cccCCCCCCEEECCCCcCC
Confidence 55677788877777652 10 0011 67777777776622 11 1455566777777777664
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
.-.. .+ .+|++|+|++|.++
T Consensus 209 ~l~~--------~~-~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 209 KLPD--------LP-LSLESIVAGNNILE 228 (454)
T ss_dssp SCCC--------CC-TTCCEEECCSSCCS
T ss_pred cCCC--------Cc-CcccEEECcCCcCC
Confidence 3110 01 15666666666655
No 142
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.90 E-value=0.00074 Score=60.86 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=66.1
Q ss_pred CCCCCcEEEcccCCCChhHHHHHHHHhcCCCccccccc---ceeeccc-ccccCCCcchhHHHHHHHhcCCCCc-eeeCC
Q 016565 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIE---NLSIDIS-SFIENCPSSVVVELVSFLSSGRSLC-SLKLR 297 (387)
Q Consensus 223 n~~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq---~L~L~~c-~l~~~~~~~~~~~L~s~L~~n~sL~-~LdLs 297 (387)
+.++|++|+|++|.+.. +. .+ ....+|+ .|.|..+ .+... . ...+...++|+ +|+|+
T Consensus 103 ~l~~L~~L~l~~n~l~~--lp----~~----~~l~~L~~L~~L~l~~N~~l~~i-~-------~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM--FP----DL----TKVYSTDIFFILEITDNPYMTSI-P-------VNAFQGLCNETLTLKLY 164 (239)
T ss_dssp CCTTCCEEEEEEECCCS--CC----CC----TTCCBCCSEEEEEEESCTTCCEE-C-------TTTTTTTBSSEEEEECC
T ss_pred CCCCCCEEeCCCCCCcc--cc----cc----ccccccccccEEECCCCcchhhc-C-------cccccchhcceeEEEcC
Confidence 45678888888887652 11 01 1122455 7778777 65221 1 12245567888 88888
Q ss_pred CCCCCchhHHHHHHHhccCCCccceEeccCcc-cCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 298 HCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 298 ~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~-L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
+|.+..-+.. .+ .. .+|++|+|++|. |++. -..++... ..+|+.|+|++|.|..
T Consensus 165 ~n~l~~i~~~----~~-~~-~~L~~L~L~~n~~l~~i--------~~~~~~~l--~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 165 NNGFTSVQGY----AF-NG-TKLDAVYLNKNKYLTVI--------DKDAFGGV--YSGPSLLDVSQTSVTA 219 (239)
T ss_dssp SCCCCEECTT----TT-TT-CEEEEEECTTCTTCCEE--------CTTTTTTC--SBCCSEEECTTCCCCC
T ss_pred CCCCcccCHh----hc-CC-CCCCEEEcCCCCCcccC--------CHHHhhcc--ccCCcEEECCCCcccc
Confidence 8888754432 11 22 378888888884 8731 01122222 0369999999999875
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.85 E-value=1.4e-05 Score=70.76 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=72.7
Q ss_pred CCCcEEEcccCCCChhHH--HHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCC
Q 016565 225 ETLASLEFLHCKLSPSFV--EGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v--~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~ 302 (387)
..++.++|..+.+....- +.+-..+. ...+|+.|.|..+.+.. +. .+...++|+.|+|++|.+.
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~----~l~~L~~L~ls~n~l~~---------l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLS----TLKACKHLALSTNNIEK---------IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHH----HTTTCSEEECSEEEESC---------CC-CHHHHTTCCEEEEEEEEEC
T ss_pred ccccCcchheeEeccccCcHhhhhHHHh----cCCCCCEEECCCCCCcc---------cc-ccccCCCCCEEECCCCCcc
Confidence 467777776666643211 11111111 12379999999999733 11 3555689999999999997
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCCChHH
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIGNAVS 370 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD~GV 370 (387)
+-. .+...+ -+|++|+|++|.|++ +. .+... ++|++|+|++|.+.+-+.
T Consensus 84 ~l~--~~~~~~----~~L~~L~L~~N~l~~---------l~-~~~~l---~~L~~L~l~~N~i~~~~~ 132 (198)
T 1ds9_A 84 KIE--NLDAVA----DTLEELWISYNQIAS---------LS-GIEKL---VNLRVLYMSNNKITNWGE 132 (198)
T ss_dssp SCS--SHHHHH----HHCSEEEEEEEECCC---------HH-HHHHH---HHSSEEEESEEECCCHHH
T ss_pred ccc--chhhcC----CcCCEEECcCCcCCc---------CC-ccccC---CCCCEEECCCCcCCchhH
Confidence 422 122122 279999999999995 22 24444 469999999999998553
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.83 E-value=0.0021 Score=61.28 Aligned_cols=80 Identities=25% Similarity=0.202 Sum_probs=48.6
Q ss_pred cCCCCceeeCCCCCCCch-hHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCC
Q 016565 287 SGRSLCSLKLRHCHLDRD-FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMI 365 (387)
Q Consensus 287 ~n~sL~~LdLs~N~L~D~-GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~L 365 (387)
.-++|+.|+||+|.|..- |+..+...+. +|+.|+|++|.|+++ ..+ ...... +|++|+|++|+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~----~L~~L~Ls~N~i~~~------~~l----~~l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAP----NLKILNLSGNELKSE------REL----DKIKGL-KLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHST----TCCEEECTTSCCCSG------GGG----GGGTTS-CCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCC----CCCEEECCCCccCCc------hhh----hhcccC-CcceEEccCCcC
Confidence 347899999999988662 2222222332 788999999999863 112 222122 588999999998
Q ss_pred CC-----hHHHHHHhhhccCc
Q 016565 366 GN-----AVSLLLCKLFFPTI 381 (387)
Q Consensus 366 gD-----~GVk~LCeaL~~~~ 381 (387)
.+ .+.+.-.-+.+|++
T Consensus 233 ~~~~~~~~~y~~~il~~~P~L 253 (267)
T 3rw6_A 233 CDTFRDQSTYISAIRERFPKL 253 (267)
T ss_dssp GGGCSSHHHHHHHHHHHCTTC
T ss_pred ccccCcchhHHHHHHHHCccc
Confidence 74 23333333445554
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.82 E-value=0.0013 Score=56.95 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=57.9
Q ss_pred ccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccc
Q 016565 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (387)
Q Consensus 257 ~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~ 336 (387)
+..+.+.+..+.+ +.-.. .+ .++|+.|+|++|.|..-.... +.. --+|++|+|++|+|++.
T Consensus 9 C~~~~l~~s~n~l-~~ip~----~~------~~~l~~L~L~~N~i~~~~~~~----~~~-l~~L~~L~Ls~N~l~~l--- 69 (170)
T 3g39_A 9 CSGTTVDCSGKSL-ASVPT----GI------PTTTQVLYLYDNQITKLEPGV----FDR-LTQLTRLDLDNNQLTVL--- 69 (170)
T ss_dssp EETTEEECTTSCC-SSCCS----CC------CTTCSEEECCSSCCCCCCTTT----TTT-CTTCSEEECCSSCCCCC---
T ss_pred cCCCEEEeCCCCc-CccCc----cC------CCCCcEEEcCCCcCCccChhh----hcC-cccCCEEECCCCCcCcc---
Confidence 3678888888887 32221 21 378999999999997543221 112 23799999999999951
Q ss_pred cCCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 337 YDRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 337 ~~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
...++... .+|++|+|++|.|..
T Consensus 70 -----~~~~f~~l---~~L~~L~L~~N~l~~ 92 (170)
T 3g39_A 70 -----PAGVFDKL---TQLTQLSLNDNQLKS 92 (170)
T ss_dssp -----CTTTTTTC---TTCCEEECCSSCCCC
T ss_pred -----ChhhccCC---CCCCEEECCCCccCE
Confidence 11233444 579999999999984
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.76 E-value=0.00059 Score=64.85 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=11.6
Q ss_pred CCCCCcEEEccc-CCCC
Q 016565 223 NSETLASLEFLH-CKLS 238 (387)
Q Consensus 223 n~~~Lt~L~L~~-n~L~ 238 (387)
+..+|++|+|++ |.|.
T Consensus 29 ~~~~L~~L~l~~~n~l~ 45 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQ 45 (347)
T ss_dssp SCSCCSEEECCSCSSCC
T ss_pred CCCCeeEEEccCCCCCC
Confidence 445788888885 7775
No 147
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.75 E-value=0.00058 Score=61.57 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=63.6
Q ss_pred CCCCCcEEEccc-CCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCc---eeeCCC
Q 016565 223 NSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLC---SLKLRH 298 (387)
Q Consensus 223 n~~~Lt~L~L~~-n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~---~LdLs~ 298 (387)
+.++|++|+|++ |.+..-... ++ ....+|+.|.|..+.+.. +-. +...++|+ +|+|++
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~----~f----~~l~~L~~L~l~~n~l~~---------lp~-~~~l~~L~~L~~L~l~~ 139 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPD----AL----KELPLLKFLGIFNTGLKM---------FPD-LTKVYSTDIFFILEITD 139 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTT----SE----ECCTTCCEEEEEEECCCS---------CCC-CTTCCBCCSEEEEEEES
T ss_pred CCcCCcEEECCCCCCeeEcCHH----Hh----CCCCCCCEEeCCCCCCcc---------ccc-cccccccccccEEECCC
Confidence 556788888887 776521100 00 022368888888877622 111 34455666 888888
Q ss_pred C-CCCchhHHHHHHHhccCCCccc-eEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCC-CCC
Q 016565 299 C-HLDRDFGRMVFSSLLEASSSLS-ILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDM-IGN 367 (387)
Q Consensus 299 N-~L~D~GvklLC~~Ll~psc~L~-~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~-LgD 367 (387)
| .+..-.... +. .-.+|+ +|+|++|.|+. +. ..++.. .+|++|+|++|. |.+
T Consensus 140 N~~l~~i~~~~----~~-~l~~L~~~L~l~~n~l~~-i~-------~~~~~~----~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 140 NPYMTSIPVNA----FQ-GLCNETLTLKLYNNGFTS-VQ-------GYAFNG----TKLDAVYLNKNKYLTV 194 (239)
T ss_dssp CTTCCEECTTT----TT-TTBSSEEEEECCSCCCCE-EC-------TTTTTT----CEEEEEECTTCTTCCE
T ss_pred CcchhhcCccc----cc-chhcceeEEEcCCCCCcc-cC-------HhhcCC----CCCCEEEcCCCCCccc
Confidence 8 776543221 11 122688 88888888872 11 011111 259999999994 764
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.68 E-value=0.0011 Score=63.07 Aligned_cols=93 Identities=18% Similarity=0.073 Sum_probs=62.0
Q ss_pred cccceeecc-cccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccc
Q 016565 258 KIENLSIDI-SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (387)
Q Consensus 258 ~Lq~L~L~~-c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~ 336 (387)
+|+.|.|.+ +.+.. .....+...++|++|||++|.|..--... +.+ --+|+.|+|++|+|++-
T Consensus 32 ~L~~L~l~~~n~l~~--------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~-l~~L~~L~l~~N~l~~~--- 95 (347)
T 2ifg_A 32 NLTELYIENQQHLQH--------LELRDLRGLGELRNLTIVKSGLRFVAPDA----FHF-TPRLSRLNLSFNALESL--- 95 (347)
T ss_dssp CCSEEECCSCSSCCE--------ECGGGSCSCCCCSEEECCSSCCCEECTTG----GGS-CSCCCEEECCSSCCSCC---
T ss_pred CeeEEEccCCCCCCC--------cChhHhccccCCCEEECCCCccceeCHHH----hcC-CcCCCEEeCCCCcccee---
Confidence 799999985 88733 11234677889999999999996533221 122 22799999999999951
Q ss_pred cCCcchhhhhccCCCCCCCCeeeCCCCCCC-ChHHHHHHh
Q 016565 337 YDRSGPLFSLGAGKSLQSLRLLNLRYDMIG-NAVSLLLCK 375 (387)
Q Consensus 337 ~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg-D~GVk~LCe 375 (387)
...++... +|+.|+|++|.|. |-.+..+-+
T Consensus 96 -----~~~~~~~~----~L~~l~l~~N~~~c~c~l~~~~~ 126 (347)
T 2ifg_A 96 -----SWKTVQGL----SLQELVLSGNPLHCSCALRWLQR 126 (347)
T ss_dssp -----CSTTTCSC----CCCEEECCSSCCCCCGGGHHHHH
T ss_pred -----CHHHcccC----CceEEEeeCCCccCCCccHHHHH
Confidence 11122222 3999999999998 544444443
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.43 E-value=0.002 Score=56.29 Aligned_cols=83 Identities=12% Similarity=0.080 Sum_probs=55.6
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCccccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~ 337 (387)
.-+.+.+....+ ..-.. .+ .++|+.|+|++|.|..-... .+.+- -+|++|+|++|+|++.
T Consensus 13 ~~~~l~~~~n~l-~~iP~----~~------~~~L~~L~Ls~N~l~~~~~~----~~~~l-~~L~~L~Ls~N~l~~i---- 72 (174)
T 2r9u_A 13 DQTLVNCQNIRL-ASVPA----GI------PTDKQRLWLNNNQITKLEPG----VFDHL-VNLQQLYFNSNKLTAI---- 72 (174)
T ss_dssp CSSEEECCSSCC-SSCCS----CC------CTTCSEEECCSSCCCCCCTT----TTTTC-TTCCEEECCSSCCCCC----
T ss_pred CCcEEEeCCCCC-CccCC----Cc------CCCCcEEEeCCCCccccCHH----HhcCC-cCCCEEECCCCCCCcc----
Confidence 456777777776 32221 21 27899999999999754221 12222 2799999999999951
Q ss_pred CCcchhhhhccCCCCCCCCeeeCCCCCCCC
Q 016565 338 DRSGPLFSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 338 ~c~~Ls~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
...++... ++|++|+|++|.|..
T Consensus 73 ----~~~~~~~l---~~L~~L~L~~N~l~~ 95 (174)
T 2r9u_A 73 ----PTGVFDKL---TQLTQLDLNDNHLKS 95 (174)
T ss_dssp ----CTTTTTTC---TTCCEEECCSSCCCC
T ss_pred ----ChhHhCCc---chhhEEECCCCccce
Confidence 11233344 579999999999984
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.06 E-value=0.006 Score=58.15 Aligned_cols=66 Identities=18% Similarity=0.078 Sum_probs=42.8
Q ss_pred HhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeee
Q 016565 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 359 (387)
Q Consensus 285 L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~ 359 (387)
+...++|+.|||++|.|.+-.. + ..|... .|+.|+|.+|.|++.... .-.+...++...+ +|+.||
T Consensus 192 ~~~l~~L~~L~Ls~N~i~~~~~--l-~~l~~l--~L~~L~L~~Npl~~~~~~-~~~y~~~il~~~P---~L~~LD 257 (267)
T 3rw6_A 192 VQKAPNLKILNLSGNELKSERE--L-DKIKGL--KLEELWLDGNSLCDTFRD-QSTYISAIRERFP---KLLRLD 257 (267)
T ss_dssp HHHSTTCCEEECTTSCCCSGGG--G-GGGTTS--CCSEEECTTSTTGGGCSS-HHHHHHHHHHHCT---TCCEES
T ss_pred HhhCCCCCEEECCCCccCCchh--h-hhcccC--CcceEEccCCcCccccCc-chhHHHHHHHHCc---ccCeEC
Confidence 4567899999999999987621 2 244432 899999999999852110 0012334666664 577776
No 151
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=94.84 E-value=0.0018 Score=62.12 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=12.9
Q ss_pred CCCCeeeCCCCCCCC
Q 016565 353 QSLRLLNLRYDMIGN 367 (387)
Q Consensus 353 qsLt~L~L~~N~LgD 367 (387)
++|+.|+|++|.|..
T Consensus 202 ~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 202 SGPVILDISRTRIHS 216 (350)
T ss_dssp ECCSEEECTTSCCCC
T ss_pred cccchhhcCCCCcCc
Confidence 579999999999874
No 152
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=91.69 E-value=0.13 Score=50.07 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=44.7
Q ss_pred cccccCChhhHHHHHhcCCchhhh-hhhccCCcccc--CCC-CCCCcccccCcccccCCCchHHHHHHHhccCCC--CcC
Q 016565 27 PYVYELPADLFDILLTCLPPLALQ-KLQTKMPFRDG--DDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG--FTD 100 (387)
Q Consensus 27 p~~~~l~~~~~~~~~~~lp~~~l~-~~~~~~p~~~~--~~~-~~~~~~~~~~~kr~r~~~~~~~W~~~~~~rw~~--~~~ 100 (387)
+.+.+||.|++..|+.+|||..|- .+. .-|. ..+ .|+ +.|++.|..+|-. ...
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~----~VCk~Wr~l~~~~-----------------~~w~~~~~~~g~~~~~~~ 107 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACR----LVCLRWKELVDGA-----------------PLWLLKCQQEGLVPEGSA 107 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGG----GTCHHHHHHHTSH-----------------HHHHHHHHHTTCCCC---
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHH----HHhHHHHHHhcCh-----------------HHHHHHhhccCccccccc
Confidence 457999999999999999998543 222 1110 011 222 3899999988443 222
Q ss_pred CCCCCchHHHHHHHHHH
Q 016565 101 QIEPVDWQQRYWEAHVQ 117 (387)
Q Consensus 101 ~~~~~~W~~~y~E~hLf 117 (387)
.....+||++|..++..
T Consensus 108 ~~~~~~Wk~~y~~~~~g 124 (297)
T 2e31_A 108 DEERDHWQQFYFLSKRR 124 (297)
T ss_dssp --CCSCHHHHHHHHHHC
T ss_pred CCCCCChhhhheheecc
Confidence 22467899999887544
No 153
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=91.17 E-value=0.062 Score=51.34 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=52.0
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcC-CCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCce-eeCCCCCCC
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCS-KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCS-LKLRHCHLD 302 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~-p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~-LdLs~N~L~ 302 (387)
++|++|+|++|.|.. +.. .-....+|++|.|..+.+.+. +. ..++...++|.+ ++++.|.|.
T Consensus 30 ~~l~~L~Ls~N~i~~---------i~~~~f~~l~~L~~L~Ls~N~i~~~----i~---~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV---------IQKGAFSGFGDLEKIEISQNDVLEV----IE---ADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp TTCSEEEEESCCCSE---------ECTTSSTTCTTCCEEEEECCTTCCE----EC---TTSBCSCTTCCEEEEEEETTCC
T ss_pred CCCCEEEccCCcCCC---------cCHHHHcCCCCCCEEECcCCCCCCc----cC---hhHhhcchhhhhhhcccCCccc
Confidence 579999999999862 211 111234788888988875331 10 012344455554 667778885
Q ss_pred chhHHHHHHHhccCCCccceEeccCcccCC
Q 016565 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (387)
Q Consensus 303 D~GvklLC~~Ll~psc~L~~L~L~~n~L~g 332 (387)
.-... ++.+- -+|++|++++|.|++
T Consensus 94 ~l~~~----~f~~l-~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 94 YINPE----AFQNL-PNLQYLLISNTGIKH 118 (350)
T ss_dssp EECTT----SBCCC-TTCCEEEEEEECCSS
T ss_pred ccCch----hhhhc-ccccccccccccccc
Confidence 43211 12222 268999999999884
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=89.98 E-value=0.18 Score=47.47 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=47.5
Q ss_pred cccccccccccHHhHHHHHHHHhhCCCCCcEEEcccCCCC--hhHHHHHHH-Hh------cCCCc---c--------ccc
Q 016565 199 LQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS--PSFVEGICR-SL------CSKRK---R--------IHK 258 (387)
Q Consensus 199 Lq~L~l~~~ls~~~~~~L~~~L~~n~~~Lt~L~L~~n~L~--d~~v~~LCe-~L------~~p~C---~--------~~~ 258 (387)
+++|.+...+.....+. +....++|++|+|++|.+. ...-..+=+ .+ .-|.- . +.+
T Consensus 27 l~~L~l~g~i~~~~~~~----l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 27 ITHLTLTGKLNAEDFRH----LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp CSEEEEEEEECHHHHHH----HHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred eeEEEEeccccHHHHHH----HHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 45555554444433333 3322578999999999876 100000000 00 00111 2 467
Q ss_pred ccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCC
Q 016565 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (387)
Q Consensus 259 Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L 301 (387)
|+++.|.. .+....- .++...++|++|+|++|.+
T Consensus 103 L~~l~L~~-~i~~I~~--------~aF~~~~~L~~l~l~~n~i 136 (329)
T 3sb4_A 103 LEKVILSE-KIKNIED--------AAFKGCDNLKICQIRKKTA 136 (329)
T ss_dssp CCC-CBCT-TCCEECT--------TTTTTCTTCCEEEBCCSSC
T ss_pred CcEEECCc-cccchhH--------HHhhcCcccceEEcCCCCc
Confidence 88888887 5533111 2356668899999999875
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=82.24 E-value=1.3 Score=37.00 Aligned_cols=37 Identities=27% Similarity=0.192 Sum_probs=18.7
Q ss_pred ccceEeccCcccCCcccccCCcchhhhhccCCCCCCCCeeeCCCCCCC
Q 016565 319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLRYDMIG 366 (387)
Q Consensus 319 ~L~~L~L~~n~L~g~l~~~~c~~Ls~aL~~n~s~qsLt~L~L~~N~Lg 366 (387)
+|++|+|++|+|+. +. ..++... .+|+.|+|++|++.
T Consensus 32 ~l~~L~Ls~N~l~~-l~-------~~~f~~l---~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTA-LP-------PGLLDAL---PALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSS-CC-------TTTGGGC---TTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCc-cC-------hhhhhhc---cccCEEEecCCCee
Confidence 46666666666662 00 1123333 24666666666654
No 156
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=81.56 E-value=0.6 Score=38.34 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=31.4
Q ss_pred ChhhHHHHHhcCCchhhhhhhccCCccccCCC-CCCCcccccCcccccCCCchHHHHHHHhccCCCCcCCCCCCchHHHH
Q 016565 33 PADLFDILLTCLPPLALQKLQTKMPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRY 111 (387)
Q Consensus 33 ~~~~~~~~~~~lp~~~l~~~~~~~p~~~~~~~-~~~~~~~~~~~kr~r~~~~~~~W~~~~~~rw~~~~~~~~~~~W~~~y 111 (387)
|=+++.-|+++-+|.-|..++.+-| .+ ++-|. -|++.|+.--|.-.. ..+.+|++||
T Consensus 14 Py~lL~PVLek~tp~QL~~IE~~nP-----~L~~dTde----------------LWk~~c~rdF~~~~p-~e~esWRelY 71 (97)
T 4hfx_A 14 PYSVLEPVLERCTPDQLYRIEEYNH-----VLIEETDQ----------------LWKVHCHRDFKEERP-EEYESWREMY 71 (97)
T ss_dssp ------CCGGGCCHHHHHHHHTC-----------CCHH----------------HHHHHC----CCSCC-CSSSCHHHHH
T ss_pred cHHHHHHHHccCCHHHHHHHHHhCc-----ccchhhHH----------------HHHHHHHhHCcccCC-CCCCCHHHHH
Confidence 4455566666677776766665555 23 33333 799999999886543 4578999999
Q ss_pred HH
Q 016565 112 WE 113 (387)
Q Consensus 112 ~E 113 (387)
..
T Consensus 72 ~r 73 (97)
T 4hfx_A 72 LR 73 (97)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 157
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=80.16 E-value=2.2 Score=40.67 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=44.5
Q ss_pred cccccCChhhHHHHHhcCCchhhhhhhccCCccccCCC-CCCCcccccCcccccCCCchHHHHHHHhccCCCCcC-----
Q 016565 27 PYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTD----- 100 (387)
Q Consensus 27 p~~~~l~~~~~~~~~~~lp~~~l~~~~~~~p~~~~~~~-~~~~~~~~~~~kr~r~~~~~~~W~~~~~~rw~~~~~----- 100 (387)
-.+..||.|++.+|++.|+|.-|-.+. .=-+-=..+ .++ ..|+++|+.++..-..
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~--~v~~~~~~~~~~~-----------------~~w~~~~~~~~~~~~~~~~~~ 77 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAA--QTCRYWRILAEDN-----------------LLWREKCKEEGIDEPLHIKRR 77 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHT--TSCHHHHHHHTCS-----------------HHHHHHHTTTTCCSCCCCCC-
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHH--HHhHHHHhhcCch-----------------hHhhhheeecccccccccccc
Confidence 447899999999999999998554332 000000011 122 2799999866432100
Q ss_pred -----CCCCCchHHHHHHHHHHH
Q 016565 101 -----QIEPVDWQQRYWEAHVQG 118 (387)
Q Consensus 101 -----~~~~~~W~~~y~E~hLf~ 118 (387)
......||..|.+++-..
T Consensus 78 ~~~~~~~~~~~wk~~~~~~~~~~ 100 (445)
T 2ovr_B 78 KVIKPGFIHSPWKSAYIRQHRID 100 (445)
T ss_dssp -CCSSCCCCCHHHHHHHHHHHHH
T ss_pred eecCCCccCCcHHHHHhhhhhhh
Confidence 011357999999988653
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=65.99 E-value=2.3 Score=35.37 Aligned_cols=38 Identities=21% Similarity=0.125 Sum_probs=24.0
Q ss_pred CCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC
Q 016565 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (387)
Q Consensus 289 ~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~ 331 (387)
++|++|||++|.|..-.... + ..--+|++|+|.+|-+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~----f-~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGL----L-DALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTT----G-GGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhh----h-hhccccCEEEecCCCee
Confidence 36888888888875433221 1 11226888888888776
No 159
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=65.45 E-value=2.3 Score=39.86 Aligned_cols=107 Identities=18% Similarity=0.101 Sum_probs=57.5
Q ss_pred CCCcEEEcccCCCChhHHHHHHHHhcCCCcccccccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCch
Q 016565 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (387)
Q Consensus 225 ~~Lt~L~L~~n~L~d~~v~~LCe~L~~p~C~~~~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~ 304 (387)
.+++++.+.++ +.......+-.. +.+|+.+.|..+++.... ..++...++|++|+|++| +..-
T Consensus 202 ~~~~~l~~~~~-l~~~~~~~l~~~-------~~~L~~l~L~~n~i~~I~--------~~aF~~~~~L~~l~l~~n-i~~I 264 (329)
T 3sb4_A 202 RDINFLTIEGK-LDNADFKLIRDY-------MPNLVSLDISKTNATTIP--------DFTFAQKKYLLKIKLPHN-LKTI 264 (329)
T ss_dssp GGCSEEEEEEC-CCHHHHHHHHHH-------CTTCCEEECTTBCCCEEC--------TTTTTTCTTCCEEECCTT-CCEE
T ss_pred cccceEEEeee-ecHHHHHHHHHh-------cCCCeEEECCCCCcceec--------HhhhhCCCCCCEEECCcc-ccee
Confidence 45666666554 333444433322 136777777766553211 123555667777777776 5433
Q ss_pred hHHHHHHHhccCCC-ccc-eEeccCcccCCcccccCCcchh-hhhccCCCCCCCCeeeCCCCCCCC
Q 016565 305 FGRMVFSSLLEASS-SLS-ILDLSGNSIGGWLSKYDRSGPL-FSLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 305 GvklLC~~Ll~psc-~L~-~L~L~~n~L~g~l~~~~c~~Ls-~aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
|..+. ..| +|+ .|+|.+ .++. +. .|+... .+|+.|+|..|.+..
T Consensus 265 ~~~aF------~~~~~L~~~l~l~~-~l~~---------I~~~aF~~c---~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 265 GQRVF------SNCGRLAGTLELPA-SVTA---------IEFGAFMGC---DNLRYVLATGDKITT 311 (329)
T ss_dssp CTTTT------TTCTTCCEEEEECT-TCCE---------ECTTTTTTC---TTEEEEEECSSCCCE
T ss_pred hHHHh------hCChhccEEEEEcc-cceE---------EchhhhhCC---ccCCEEEeCCCccCc
Confidence 32211 122 377 777776 5551 11 244444 468888888887754
No 160
>1lm8_V VHL, VON hippel-lindau disease tumor suppressor; regulation, tumor suppressor, oxygen sensing, transcription; 1.85A {Homo sapiens} SCOP: b.3.3.1 PDB: 1vcb_C 1lqb_C 3zrf_C 3zrc_C
Probab=49.53 E-value=13 Score=32.86 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=32.1
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHHHhcCCc
Q 016565 2 VKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPP 46 (387)
Q Consensus 2 ~~~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~~~~lp~ 46 (387)
-|+++|.+.|+++| +.+.+..+ -...++|-.++..|.++..-
T Consensus 100 ~pv~tL~e~cl~~I-r~l~~~~~--~~~leipr~L~~el~~~~~~ 141 (160)
T 1lm8_V 100 LPVYTLKERCLQVV-RSLVKPEN--YRRLDIVRSLYEDLEDHPNV 141 (160)
T ss_dssp CCCCCHHHHHHHHH-HHHSCGGG--GGGSCSCHHHHHHHHSCCCH
T ss_pred ccchhHHHHHHHHH-HHhcChhh--cccccccHHHHHHHHHChHH
Confidence 47899999999999 77876444 33578888888888766543
No 161
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=42.28 E-value=36 Score=23.10 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCcccccCChhhHHHHHh
Q 016565 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLT 42 (387)
Q Consensus 4 ~p~L~~lc~~~i~~~~~~~~~~~p~~~~l~~~~~~~~~~ 42 (387)
||||..||=-+|-+++.... .-..||+.+++.+.+
T Consensus 1 v~sLQHLCR~~I~~~~~~~~----~~LpLP~~Lk~yL~e 35 (40)
T 2jz3_A 1 VATLQHLCRKTVNGHLDSYE----KVTQLPGPIREFLDQ 35 (40)
T ss_pred CccHHHHHHHHHHHHcCCCc----ccCCCCHHHHHHHHH
Confidence 69999999999999983111 134577777777653
No 162
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=35.10 E-value=24 Score=24.24 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=19.3
Q ss_pred cccccCChhhHHHHHhcCCchhhh
Q 016565 27 PYVYELPADLFDILLTCLPPLALQ 50 (387)
Q Consensus 27 p~~~~l~~~~~~~~~~~lp~~~l~ 50 (387)
+.+.+||.|++..|+.+||+.-+-
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~ 30 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELL 30 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHH
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHH
Confidence 457899999999999999987443
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=29.49 E-value=14 Score=36.11 Aligned_cols=96 Identities=10% Similarity=0.048 Sum_probs=47.1
Q ss_pred cccceeecccccccCCCcchhHHHHHHHhcCCCCceeeCCCCCCCchhHHHHHHHhccCCCccceEeccCcccC--Cccc
Q 016565 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG--GWLS 335 (387)
Q Consensus 258 ~Lq~L~L~~c~l~~~~~~~~~~~L~s~L~~n~sL~~LdLs~N~L~D~GvklLC~~Ll~psc~L~~L~L~~n~L~--g~l~ 335 (387)
+|+.+.|.. ++... =..++...++|+.++|.+|.+.+.....+...-..-.-+|+.+.|.+ .++ |..+
T Consensus 249 ~L~~i~lp~-~i~~I--------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a 318 (401)
T 4fdw_A 249 GITTVKLPN-GVTNI--------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL 318 (401)
T ss_dssp CCSEEEEET-TCCEE--------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT
T ss_pred CccEEEeCC-CccEE--------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh
Confidence 677777743 22221 02335566788888888877652222212111111112577777774 355 2111
Q ss_pred ccCCcchhh-------------hhccCCCCCCCCeeeCCCCCCCC
Q 016565 336 KYDRSGPLF-------------SLGAGKSLQSLRLLNLRYDMIGN 367 (387)
Q Consensus 336 ~~~c~~Ls~-------------aL~~n~s~qsLt~L~L~~N~LgD 367 (387)
=.+|..|.. |+... +|+.+++.+|.+..
T Consensus 319 F~~c~~L~~l~lp~~l~~I~~~aF~~~----~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 319 LGGNRKVTQLTIPANVTQINFSAFNNT----GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTTCCSCCEEEECTTCCEECTTSSSSS----CCCEEEECCSSCCB
T ss_pred hcCCCCccEEEECccccEEcHHhCCCC----CCCEEEEcCCCCcc
Confidence 112332221 33322 58888888887543
No 164
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=29.18 E-value=19 Score=34.19 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=20.8
Q ss_pred ccccCChh----hHHHHHhcCCchhhhhh
Q 016565 28 YVYELPAD----LFDILLTCLPPLALQKL 52 (387)
Q Consensus 28 ~~~~l~~~----~~~~~~~~lp~~~l~~~ 52 (387)
.+..||+| ++.+|++.|+|..|-..
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~ 38 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAA 38 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHH
Confidence 36889999 99999999999866543
No 165
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=21.63 E-value=32 Score=21.41 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=6.8
Q ss_pred ccCcccccCCC
Q 016565 72 ENGRKRGRYGN 82 (387)
Q Consensus 72 ~~~~kr~r~~~ 82 (387)
++.|||.|+|+
T Consensus 5 rrrrkrkrewd 15 (28)
T 3ukx_C 5 RRRRKRKREWD 15 (28)
T ss_dssp -CCCCCCCCCC
T ss_pred HHHHHhhcccc
Confidence 45677777765
Done!