Query 016567
Match_columns 387
No_of_seqs 231 out of 363
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 2E-126 3E-131 934.8 26.3 309 35-387 43-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 8.7E-85 1.9E-89 622.2 16.8 240 101-381 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 1.1E-19 2.4E-24 185.9 4.3 78 295-382 485-562 (565)
4 PF12043 DUF3527: Domain of un 98.3 8.1E-05 1.7E-09 75.4 20.7 72 295-382 273-344 (346)
5 PF12937 F-box-like: F-box-lik 97.8 8.2E-06 1.8E-10 58.8 0.9 36 37-80 1-36 (47)
6 PF00646 F-box: F-box domain; 97.5 1.6E-05 3.4E-10 56.9 -0.7 39 36-82 2-40 (48)
7 PLN03215 ascorbic acid mannose 97.4 6.6E-05 1.4E-09 76.8 1.9 40 35-81 2-41 (373)
8 smart00256 FBOX A Receptor for 97.2 6.7E-05 1.4E-09 51.3 -0.1 34 40-81 1-34 (41)
9 KOG2997 F-box protein FBX9 [Ge 89.4 0.16 3.5E-06 51.6 1.3 97 34-137 101-236 (366)
10 KOG2120 SCF ubiquitin ligase, 67.6 1.7 3.6E-05 44.6 -0.1 67 37-111 98-167 (419)
11 PF04525 Tub_2: Tubby C 2; In 39.2 1.4E+02 0.0031 27.2 7.6 78 106-184 62-144 (187)
12 PF11038 DGF-1_5: Dispersed ge 27.4 84 0.0018 30.5 4.1 100 63-188 20-126 (278)
13 KOG0274 Cdc4 and related F-box 20.1 23 0.00051 38.3 -1.3 43 31-81 102-144 (537)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=1.6e-126 Score=934.83 Aligned_cols=309 Identities=60% Similarity=0.986 Sum_probs=286.2
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhhhcCcccccccccccccccCCCCCceeEEEEEE
Q 016567 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKR 114 (387)
Q Consensus 35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~~v~~p~~~g~~tFp~sLkqPgPr~~~iQC~IkR 114 (387)
+.|++||||||+|+|+|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++|+||||+|.++||+|+|
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R 122 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR 122 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecceEEEEEecccC----CCCceEEEEeecccCCcceEEEEccCCCCCCCCCceeeeeeecceecEEEEecCCCCCCC
Q 016567 115 NRSTQTYHLYLSLTNA----DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAG 190 (387)
Q Consensus 115 ~k~~~tY~LyL~l~~~----e~~KfLLaARK~rr~~tSnYiISld~~dlSr~s~~yvGKLRSNflGTkF~iYD~g~p~~~ 190 (387)
||+|++|+||+++.++ |++||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|.+
T Consensus 123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~--- 199 (355)
T KOG2502|consen 123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVN--- 199 (355)
T ss_pred ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCC---
Confidence 9999999999999877 678999999999999999999999999999999999999999999999999999732
Q ss_pred CccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCcccccCCCCCCccceecccCCCCCCC
Q 016567 191 AKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPS 270 (387)
Q Consensus 191 a~~~~~r~~~~~~~k~vsp~vp~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~s~i~~gg~~P~~~~~~~~~~~~~~~ 270 (387)
.+|.++ ++|++++|||+|+||+||||+||||||+|+||.||.++ ++|.+|.|.+..+..
T Consensus 200 -------~~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~------ 258 (355)
T KOG2502|consen 200 -------PSRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS------ 258 (355)
T ss_pred -------cccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc------
Confidence 122333 68899999999999999999999999999999999887 899998887654311
Q ss_pred ccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEEEecCCCCCCCCCCCeEEEE
Q 016567 271 IPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 350 (387)
Q Consensus 271 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSvKNFQLv~~~~~~~~~~~~~~iiLQ 350 (387)
.+.+.++..++++++|+||.|+|||++||||||||||||+||||||||||.. ++++||||
T Consensus 259 -------------~l~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQ 318 (355)
T KOG2502|consen 259 -------------LLFRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQ 318 (355)
T ss_pred -------------hhhhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEE
Confidence 1223333447899999999999999999999999999999999999999974 56999999
Q ss_pred eeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016567 351 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 387 (387)
Q Consensus 351 FGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACE 387 (387)
|||||+|+|||||+||||+||||||||||||+|||||
T Consensus 319 FGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 319 FGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE 355 (355)
T ss_pred eeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=8.7e-85 Score=622.18 Aligned_cols=240 Identities=57% Similarity=0.927 Sum_probs=182.7
Q ss_pred CCCCCceeEEEEEEeeecc------eEEEEEecccCCCCceEEEEeecccCCcceEEEEccCCCCCCCCCceeeeeeecc
Q 016567 101 PGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF 174 (387)
Q Consensus 101 PgPr~~~iQC~IkR~k~~~------tY~LyL~l~~~e~~KfLLaARK~rr~~tSnYiISld~~dlSr~s~~yvGKLRSNf 174 (387)
|||+|++|||+|+|||+|. +|+|||+. +++||||||||+++++||||||||+++|+||++++|||||||||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~---~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf 77 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEG---ENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNF 77 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEES---TTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-T
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEecccc---CCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccc
Confidence 8999999999999999985 45666653 67899999999999999999999999999999999999999999
Q ss_pred eecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCcccccCCCCC
Q 016567 175 LGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVA 254 (387)
Q Consensus 175 lGTkF~iYD~g~p~~~a~~~~~r~~~~~~~k~vsp~vp~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~s~i~~gg~~ 254 (387)
+||+|+|||+|.+++.+. ..+|..+..++|||+|+||+||||++|||||+|+||+|+.+..++++..
T Consensus 78 ~GT~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~ 144 (246)
T PF01167_consen 78 LGTEFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRV 144 (246)
T ss_dssp TSSEEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B-
T ss_pred ceeEEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceee
Confidence 999999999997665432 1256677889999999999999999999999999999988777666655
Q ss_pred CccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEEEec
Q 016567 255 PTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS 334 (387)
Q Consensus 255 P~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSvKNFQLv~~ 334 (387)
|.+..- ...+...........+++++|+||+|+||+++++|+|||+||||+|||||||||++
T Consensus 145 ~~~p~~------------------~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~ 206 (246)
T PF01167_consen 145 PFQPLN------------------QEKDSLLSRFQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHP 206 (246)
T ss_dssp ----SS-------------------CCCSHHHHHHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBT
T ss_pred eeeccc------------------cccccccccccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEcc
Confidence 433100 00011112222345678999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCc
Q 016567 335 PENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 381 (387)
Q Consensus 335 ~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFD 381 (387)
.+++++||||||+++|+|+|||+|||||+|||||||||||
T Consensus 207 -------~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 207 -------SDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp -------TBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred -------CCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 3678999999999999999999999999999999999998
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.77 E-value=1.1e-19 Score=185.89 Aligned_cols=78 Identities=42% Similarity=0.731 Sum_probs=72.4
Q ss_pred ceeEeecCCCccccccccEEeecCCceeccccceeEEEecCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHH
Q 016567 295 GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFA 374 (387)
Q Consensus 295 ~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSvKNFQLv~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFa 374 (387)
+..++.||+|.|||+.|-|+|||.||||+.|.||||+-.. .+.|||||+|+.+.|++||+||||+.||||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa 554 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA 554 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence 5569999999999999999999999999999999999763 578999999999999999999999999999
Q ss_pred HHHHcCcc
Q 016567 375 ICLSSFDT 382 (387)
Q Consensus 375 I~LssFDt 382 (387)
+||++.-.
T Consensus 555 valanvtq 562 (565)
T KOG2503|consen 555 VALANVTQ 562 (565)
T ss_pred HHHhhhhh
Confidence 99998643
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=98.33 E-value=8.1e-05 Score=75.36 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=53.8
Q ss_pred ceeEeecCCCccccccccEEeecCCceeccccceeEEEecCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHH
Q 016567 295 GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFA 374 (387)
Q Consensus 295 ~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSvKNFQLv~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFa 374 (387)
.+.||.|..- .+-..+.+.+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||++|||+
T Consensus 273 ~L~VL~n~~~----------~~~~~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFS 336 (346)
T PF12043_consen 273 PLRVLSNQSQ----------NSKKSSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFS 336 (346)
T ss_pred CeEEeCCCCc----------cccccccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHH
Confidence 5677776522 122345556677788997652 234448999999999999999999999999999
Q ss_pred HHHHcCcc
Q 016567 375 ICLSSFDT 382 (387)
Q Consensus 375 I~LssFDt 382 (387)
||++-.++
T Consensus 337 iciA~lh~ 344 (346)
T PF12043_consen 337 ICIAVLHS 344 (346)
T ss_pred Hhheeeec
Confidence 99987654
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.77 E-value=8.2e-06 Score=58.80 Aligned_cols=36 Identities=36% Similarity=0.777 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhH
Q 016567 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (387)
Q Consensus 37 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 80 (387)
|..||+|+|.+|+..++. +++..|+.|||.|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~~--------~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDP--------RDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-H--------HHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHC
Confidence 789999999999988844 278999999999999884
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.51 E-value=1.6e-05 Score=56.91 Aligned_cols=39 Identities=28% Similarity=0.589 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhh
Q 016567 36 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEI 82 (387)
Q Consensus 36 ~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~~ 82 (387)
.|.+||+|++.+|+.+++-.+ +++|+.||+.|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~--------~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKD--------LLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHH--------HHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHH--------HHHHHHHhhHHHHHHcCC
Confidence 478999999999999996643 899999999999998764
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.40 E-value=6.6e-05 Score=76.82 Aligned_cols=40 Identities=33% Similarity=0.658 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016567 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (387)
Q Consensus 35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (387)
..|+.||+|||+.|..|| |++-|++--++||++||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhccc
Confidence 359999999999999999 9999999999999999998765
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.24 E-value=6.7e-05 Score=51.27 Aligned_cols=34 Identities=38% Similarity=0.813 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016567 40 LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (387)
Q Consensus 40 ~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (387)
||+|++.+|+.++ +. ++..+|+.||+.||.++.+
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999 44 7889999999999998754
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=89.40 E-value=0.16 Score=51.58 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=59.3
Q ss_pred CCCCCC---CCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhh-------hcCccccc-cccc--------
Q 016567 34 TCCWAN---LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEI-------VKVPELSG-YLTF-------- 94 (387)
Q Consensus 34 ~~~w~~---~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~~-------v~~p~~~g-~~tF-------- 94 (387)
|++|-+ ||+|+|..|+++|=.+- =.-++.+.||+||+.|+-.+..= ++.=+.++ ++..
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~ 177 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYY 177 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHH
Confidence 778866 99999999999995432 12356789999999876654320 01111111 1111
Q ss_pred ----ccccccCCCCCceeEEEEEEee---ec-------------ceEEEEEecccCCCCceEE
Q 016567 95 ----PISVKQPGPRDYLLQCFIKRNR---ST-------------QTYHLYLSLTNADDGKFLL 137 (387)
Q Consensus 95 ----p~sLkqPgPr~~~iQC~IkR~k---~~-------------~tY~LyL~l~~~e~~KfLL 137 (387)
-+.|.+|--|- ==|+|-++. -| -+||=|+-+. ++|++|+
T Consensus 178 ~SWR~Mfl~RpRvrF--dG~YIS~~tYiR~G~~~~~~~~~PVHlV~YYRYiRFy--P~G~~l~ 236 (366)
T KOG2997|consen 178 TSWREMFLERPRVRF--DGVYISKTTYIRQGENSLDSFYRPVHLVEYYRYIRFY--PDGHVLM 236 (366)
T ss_pred hHHHHHHhhCcceee--cceEEEEEeEeecCchhhhhhcCcceeeEEEEEEEec--CCCcEEE
Confidence 11256654332 227777764 12 1799999988 4788876
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=67.60 E-value=1.7 Score=44.63 Aligned_cols=67 Identities=19% Similarity=0.463 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh--hhcCcccccccccccccccCCCCCc-eeEEE
Q 016567 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE--IVKVPELSGYLTFPISVKQPGPRDY-LLQCF 111 (387)
Q Consensus 37 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~--~v~~p~~~g~~tFp~sLkqPgPr~~-~iQC~ 111 (387)
|.+||.|+|.+|..- =..++...-|+||++|-.++.+ .-...+..|+---|.+|-|=..|+. .++|-
T Consensus 98 ~~slpDEill~IFs~--------L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla 167 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSC--------LCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA 167 (419)
T ss_pred cccCCHHHHHHHHHh--------ccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence 999999999999964 4678899999999999887754 2345677777777888877777774 46664
No 11
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=39.19 E-value=1.4e+02 Score=27.20 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=30.5
Q ss_pred ceeEEEEEEeeec--ceEEEEEecccCCCCceEEEEeecc-cCCcceEEEEccCC-CC-CCCCCceeeeeeecceecEEE
Q 016567 106 YLLQCFIKRNRST--QTYHLYLSLTNADDGKFLLAARKCR-RATCTDYIISLHSD-DM-SKGSSTYLGKLRSNFLGTKFI 180 (387)
Q Consensus 106 ~~iQC~IkR~k~~--~tY~LyL~l~~~e~~KfLLaARK~r-r~~tSnYiISld~~-dl-Sr~s~~yvGKLRSNflGTkF~ 180 (387)
|..-..|+|..-+ ++|..|.+-.. ++.+.+...||.. -...++..+.+.+. .. .-.+...-=+|+.||++-.|+
T Consensus 62 G~~L~~i~~k~~~l~~~w~i~~~~~~-~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~ 140 (187)
T PF04525_consen 62 GNPLFTIRRKLFSLRPTWEIYRGGGS-EGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFT 140 (187)
T ss_dssp S-EEEEEE--------EEEEEETT----GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--E
T ss_pred CCEEEEEEeeecccceEEEEEECCCC-ccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEE
Confidence 4455677764332 58999987321 2224666666651 22223333333322 11 011222334689999999999
Q ss_pred EecC
Q 016567 181 VYDG 184 (387)
Q Consensus 181 iYD~ 184 (387)
|||.
T Consensus 141 I~~~ 144 (187)
T PF04525_consen 141 IYDS 144 (187)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9973
No 12
>PF11038 DGF-1_5: Dispersed gene family protein 1 of Trypanosoma cruzi region 5; InterPro: IPR021282 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents domain 5 on this protein, found downstream the C-terminal domain.
Probab=27.37 E-value=84 Score=30.52 Aligned_cols=100 Identities=27% Similarity=0.431 Sum_probs=57.5
Q ss_pred cceeeecccchhHHHHhHhhhcCccccccccc-ccccccC----CCCCcee-EEEEEEeeecceEEEEEecccCCCCceE
Q 016567 63 RSVVACAGVCRSWRQITKEIVKVPELSGYLTF-PISVKQP----GPRDYLL-QCFIKRNRSTQTYHLYLSLTNADDGKFL 136 (387)
Q Consensus 63 ~~vv~ca~vc~~wr~~~~~~v~~p~~~g~~tF-p~sLkqP----gPr~~~i-QC~IkR~k~~~tY~LyL~l~~~e~~KfL 136 (387)
+-.|+|+..|| |. ++|+..-.++| |.|+.|| +|++..+ .-.-.||+.++.= .+=
T Consensus 20 ~~~va~~~~~r-w~-------rd~~l~~~l~f~~~s~~q~~~~~~~~ge~lrnatw~rn~tnp~~------------vle 79 (278)
T PF11038_consen 20 KLTVALPPPFR-WA-------RDPQLGTHLTFCRCSRMQPNGYSGPWGEMLRNATWVRNATNPST------------VLE 79 (278)
T ss_pred ceEEecCCCcc-cc-------cCCCcCcceEEEEecccCCccCCCchHhhhccCeeeecCCCCce------------eEE
Confidence 45689999999 75 47887777887 6688898 4666433 3456677766532 233
Q ss_pred EEEeecccCCcceEEEEccCCCCCCCCC-ceeeeeeecceecEEEEecCCCCC
Q 016567 137 LAARKCRRATCTDYIISLHSDDMSKGSS-TYLGKLRSNFLGTKFIVYDGQPPH 188 (387)
Q Consensus 137 LaARK~rr~~tSnYiISld~~dlSr~s~-~yvGKLRSNflGTkF~iYD~g~p~ 188 (387)
|++-+ ...|.|-+|.+.+-|-.. .-.|--+.-++| .|||-.+-||-
T Consensus 80 lavp~-----~~~yfig~de~ivi~~~~~av~ggc~gvl~g-sfti~sntp~~ 126 (278)
T PF11038_consen 80 LAVPV-----HRGYFIGMDETIVIRCDAHAVFGGCKGVLLG-SFTINSNTPPA 126 (278)
T ss_pred EEEec-----cCceEEecCceEEEEecchhhcCCcceEEEe-eEEecCCCcHH
Confidence 33322 235667776665433221 112222222333 58887776653
No 13
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=20.12 E-value=23 Score=38.32 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=34.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016567 31 SSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (387)
Q Consensus 31 ~~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (387)
..+..-=..||.||..-|+.-+ +. ++...|++||+.|+.++..
T Consensus 102 ~~~~dfi~~lp~el~~~il~~L-------d~-~~l~~~~~v~~~w~~~~~~ 144 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFL-------DG-RDLLAVRQVCRNWNKLLDD 144 (537)
T ss_pred ccccchhhcccchhcccccccC-------CH-HHhhhhhhhcchhhhhhhc
Confidence 3455556789999998898888 44 6699999999999987754
Done!