Query 016567
Match_columns 387
No_of_seqs 231 out of 363
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 2.1E-90 7.2E-95 669.1 22.5 242 98-387 29-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.2E-87 4E-92 640.9 22.6 236 98-381 5-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.1 5.9E-07 2E-11 65.0 1.4 40 33-80 5-44 (53)
4 2ast_B S-phase kinase-associat 96.9 0.00021 7.1E-09 66.6 1.3 40 33-80 5-44 (336)
5 2e31_A FBS1, F-box only protei 96.8 0.00038 1.3E-08 67.9 2.0 40 34-81 48-88 (297)
6 2p1m_B Transport inhibitor res 96.6 0.00042 1.4E-08 69.4 1.0 42 33-81 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 94.9 0.0083 2.8E-07 57.4 1.8 41 32-80 14-54 (445)
8 3v7d_B Cell division control p 94.4 0.0049 1.7E-07 58.9 -1.2 43 31-81 9-51 (464)
9 3l2o_B F-box only protein 4; s 92.4 0.015 5.2E-07 57.1 -1.4 39 35-81 3-41 (312)
10 3ogk_B Coronatine-insensitive 92.3 0.028 9.4E-07 56.2 0.3 37 37-80 13-49 (592)
11 1p22_A F-BOX/WD-repeat protein 91.4 0.023 7.8E-07 54.4 -1.4 42 32-81 6-51 (435)
12 1zxu_A AT5G01750 protein; PFAM 30.1 1.7E+02 0.0058 26.0 8.0 12 215-226 165-176 (217)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=2.1e-90 Score=669.10 Aligned_cols=242 Identities=40% Similarity=0.715 Sum_probs=185.8
Q ss_pred cccCCCCCceeEEEEEEeeec------ceEEEEEecccCCCCceEEEEeecccCCcceEEEEccCCCCCCCCCceeeeee
Q 016567 98 VKQPGPRDYLLQCFIKRNRST------QTYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLR 171 (387)
Q Consensus 98 LkqPgPr~~~iQC~IkR~k~~------~tY~LyL~l~~~e~~KfLLaARK~rr~~tSnYiISld~~dlSr~s~~yvGKLR 171 (387)
|+||+|+|+++||+|+|||+| ++|||||+. ++++|||||||+|+++|+||+||+|++|+||++++||||||
T Consensus 29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~~---~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGKLr 105 (276)
T 2fim_A 29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDT---EKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLR 105 (276)
T ss_dssp GGSCCCTTCCEEEEEEEEC-------CCEEEEEECS---SSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEEEE
T ss_pred hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEeC---CCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEEEE
Confidence 999999999999999999998 599999972 56899999999999999999999999999999999999999
Q ss_pred ecceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCcccccCC
Q 016567 172 SNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESG 251 (387)
Q Consensus 172 SNflGTkF~iYD~g~p~~~a~~~~~r~~~~~~~k~vsp~vp~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~s~i~~g 251 (387)
|||+||+|+|||+|.+++. ..+|+++.+++|||+|+||+||||++|||+|+|+||.+. ++|
T Consensus 106 SNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~----~~~ 166 (276)
T 2fim_A 106 SNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS----AEN 166 (276)
T ss_dssp ECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECBC----TTS
T ss_pred EccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc----cCC
Confidence 9999999999999954321 135667788999999999999999999999999998532 233
Q ss_pred CCCCccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEE
Q 016567 252 GVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQL 331 (387)
Q Consensus 252 g~~P~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSvKNFQL 331 (387)
+..|.+. .+ ..++++.++++...+++++|+||+|+|||++|||||||+||||+||||||||
T Consensus 167 ~~~~~~p----~~---------------~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNFQL 227 (276)
T 2fim_A 167 ERVPIRP----RN---------------ASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQI 227 (276)
T ss_dssp CBCCCCC----SS---------------TTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCEEE
T ss_pred CEecccC----CC---------------cccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeeccccceEEE
Confidence 3332211 00 1111222233445678999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016567 332 VASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 387 (387)
Q Consensus 332 v~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACE 387 (387)
|+++ ++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 228 v~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 228 VHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp ECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred EecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 9864 678999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.2e-87 Score=640.86 Aligned_cols=236 Identities=40% Similarity=0.702 Sum_probs=191.2
Q ss_pred cccCCCCCceeEEEEEEeeec------ceEEEEEecccCCCCceEEEEeecccCCcceEEEEccCCCCCCCCCceeeeee
Q 016567 98 VKQPGPRDYLLQCFIKRNRST------QTYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLR 171 (387)
Q Consensus 98 LkqPgPr~~~iQC~IkR~k~~------~tY~LyL~l~~~e~~KfLLaARK~rr~~tSnYiISld~~dlSr~s~~yvGKLR 171 (387)
|+||+|+|++|||+|+|||+| ++||||++- ++++|||||||+++++|||||||+|++|+||++++||||||
T Consensus 5 l~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~~---~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGKLr 81 (246)
T 3c5n_A 5 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDT---EKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLR 81 (246)
T ss_dssp GGSCCCTTCEEEEEEEECC------CCCEEEEEESS---SSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEEEE
T ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEeC---CCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEEEE
Confidence 999999999999999999998 589999972 45679999999999999999999999999999999999999
Q ss_pred ecceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCcccccCC
Q 016567 172 SNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESG 251 (387)
Q Consensus 172 SNflGTkF~iYD~g~p~~~a~~~~~r~~~~~~~k~vsp~vp~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~s~i~~g 251 (387)
|||+||+|+|||+|++++. ..+|+++.+++|||+|+||+||||++|||+|+|+||.+. ++|
T Consensus 82 sNf~Gt~F~iyD~g~~p~~---------------~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~----~~~ 142 (246)
T 3c5n_A 82 SNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS----AEN 142 (246)
T ss_dssp ECSSSSEEEEECSCBCGGG---------------CTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBC----TTS
T ss_pred EccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc----cCC
Confidence 9999999999999954321 134667788999999999999999999999999998532 233
Q ss_pred CCCCccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEE
Q 016567 252 GVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQL 331 (387)
Q Consensus 252 g~~P~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSvKNFQL 331 (387)
+..|.+. . ...++++.+.++...+++++|+||+|+|||++|||||||+||||+||||||||
T Consensus 143 ~~~~~~p----~---------------~~~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNFqL 203 (246)
T 3c5n_A 143 ERVPIRP----R---------------NASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQI 203 (246)
T ss_dssp CBCCCCC----S---------------STTSSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCEEE
T ss_pred CEeeccC----C---------------CccccchhhhhccCCcceEEEeccCCcccccCCEEEEecCCeeeccccceEEE
Confidence 3332211 0 01111222233445678999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCc
Q 016567 332 VASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 381 (387)
Q Consensus 332 v~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFD 381 (387)
|+++ ++++||||||||++|+|||||+|||||||||||||||||
T Consensus 204 v~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 204 VHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp EBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred EecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 9873 678999999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.13 E-value=5.9e-07 Score=64.96 Aligned_cols=40 Identities=30% Similarity=0.744 Sum_probs=33.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhH
Q 016567 33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (387)
Q Consensus 33 ~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 80 (387)
++..|+.||+|+|..|+.++ | .++++.||.||++|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999 4 4788999999999999874
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.93 E-value=0.00021 Score=66.59 Aligned_cols=40 Identities=30% Similarity=0.745 Sum_probs=33.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhH
Q 016567 33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (387)
Q Consensus 33 ~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 80 (387)
++..|+.||+|+|..|+..+ |. +++++||.||++|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L-------~~-~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCL-------CL-PELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTS-------CH-HHHHHTTSSCHHHHHHHT
T ss_pred ccCChhhCCHHHHHHHHHhC-------CH-HHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999 33 378999999999999873
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.80 E-value=0.00038 Score=67.89 Aligned_cols=40 Identities=35% Similarity=0.733 Sum_probs=34.4
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCCCcccee-eecccchhHHHHhHh
Q 016567 34 TCCWANLPQELLREILAKIEAADSAWPSRRSVV-ACAGVCRSWRQITKE 81 (387)
Q Consensus 34 ~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv-~ca~vc~~wr~~~~~ 81 (387)
......||+|||.+|+.|| |. ++++ .|++|||+||.++.+
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~-~~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PA-TELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CH-HHHHHTGGGTCHHHHHHHTS
T ss_pred ccChhhCCHHHHHHHHHcC-------CH-HHHHHHHHHHhHHHHHHhcC
Confidence 3467899999999999999 76 5677 999999999998753
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.63 E-value=0.00042 Score=69.36 Aligned_cols=42 Identities=21% Similarity=0.410 Sum_probs=31.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016567 33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (387)
Q Consensus 33 ~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (387)
+...|+.||+|+|..|+.+| |..+++++|+.||++|+.+...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999 8788999999999999998443
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.88 E-value=0.0083 Score=57.36 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=35.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhH
Q 016567 32 SPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (387)
Q Consensus 32 ~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 80 (387)
....-.+.||+|||..|+..|+ -+++..||.||+.|+.++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~--------~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLE--------PKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSC--------HHHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCC--------HHHHHHHHHHhHHHHhhcC
Confidence 4456789999999999999994 3668999999999998774
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.36 E-value=0.0049 Score=58.85 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016567 31 SSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (387)
Q Consensus 31 ~~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (387)
..+..-++.||+|+|..|+..| |. ++++.|+.||+.|+.++.+
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred ccccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 3556678899999999999999 43 5789999999999998764
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.39 E-value=0.015 Score=57.10 Aligned_cols=39 Identities=13% Similarity=0.314 Sum_probs=33.7
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016567 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (387)
Q Consensus 35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (387)
+-|..||.|++..|+.-|+. +++..||.||+.||.++.+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred chhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 34788999999999999943 5689999999999999865
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.26 E-value=0.028 Score=56.24 Aligned_cols=37 Identities=16% Similarity=0.422 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhH
Q 016567 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (387)
Q Consensus 37 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 80 (387)
...||+|+|..|+.+| +..+++++|+.||++|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 4579999999999999 566889999999999999854
No 11
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=91.38 E-value=0.023 Score=54.40 Aligned_cols=42 Identities=26% Similarity=0.532 Sum_probs=35.0
Q ss_pred CCCCCCCCCCHH----HHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHh
Q 016567 32 SPTCCWANLPQE----LLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (387)
Q Consensus 32 ~~~~~w~~~~~e----ll~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~ 81 (387)
.+..-.+.||+| ||..|+..|+. +++..||.|||.|+.++.+
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 455667889999 99999999954 6788999999999988753
No 12
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=30.15 E-value=1.7e+02 Score=25.96 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=7.1
Q ss_pred ceeEEEEEEecc
Q 016567 215 NYSVAHISYELN 226 (387)
Q Consensus 215 ~~ela~V~Ye~N 226 (387)
...||.|+=+.+
T Consensus 165 ~~~Va~I~kk~~ 176 (217)
T 1zxu_A 165 DAIVAQMHRKHT 176 (217)
T ss_dssp CCEEEEEEEC--
T ss_pred CEEEEEEEeeee
Confidence 356888877654
Done!