BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016569
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 320 bits (820), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 166/377 (44%), Positives = 241/377 (63%), Gaps = 5/377 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G + P + Q D +F TNC+D ELK+K R+C + +K R+ ++D
Sbjct: 28 GPATILAIGTSNPTNIFEQSTYPDFFFDVTNCNDKTELKKKFQRICDKSGIKKRHFHLTD 87
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EIL+K P + ++ R DI V ++A EA+ + IK WG+P + ITH+V+ ++S
Sbjct: 88 EILRKNPSICKFKEASLDPRQDIAVLEVPKLAKEAAISAIKQWGQPKSKITHLVFATTSG 147
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D LA+ LGL P +RVMLY G G + LRVAKD+AENN G+RVL+A SE T
Sbjct: 148 VDMPGADFQLAKLLGLRPTVKRVMLYQQGXYAGATVLRVAKDLAENNKGARVLVACSEVT 207
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+PLFE+H A + LP+++ I
Sbjct: 208 AVTFRAPSETHLDGLVGSALFGDGAAALIVGSDPVPQEEKPLFEIHWAGEAVLPDSDGAI 267
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
+G L E G+ F L +++P +I NI+ + + + F + YN MFWAVHPGGPAIL++
Sbjct: 268 NGHLREAGLIFHLLKDVPGLISKNIDKVLAEPLEYVHFPS--YNDMFWAVHPGGPAILDQ 325
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMK-SQDHEDTDWGLILA 370
+E +L L DK+ ASR L YGN SS ++++VL+ + + S ++ E +WG ++
Sbjct: 326 IEAKLGLSTDKMQASRDVLASYGNMSSASVLFVLDQIRKNSEELHLPTTGEGFEWGFVIG 385
Query: 371 FGPGITFEGILARNLTV 387
FGPG+T E +L R++ +
Sbjct: 386 FGPGLTVETLLLRSINI 402
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 315 bits (807), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 162/389 (41%), Positives = 242/389 (62%), Gaps = 6/389 (1%)
Query: 1 MGSLAGFAN-KASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLC 58
M S+ F N + + G ATILA+G A P V Q D YFK T + LK+K R+C
Sbjct: 588 MASVEEFRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRIC 647
Query: 59 KTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRP 118
+ +K RY+ +++E+L+++P + P++ R +I V ++ EA+ +K WG+P
Sbjct: 648 DKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQP 707
Query: 119 ITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAEN 178
+ ITH+V+ ++S +PG D LA LGL P +RVMLY GC G + LR AKD+AEN
Sbjct: 708 KSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAEN 767
Query: 179 NPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDP-VPSERPLFELH 237
N G+RVL+ SE T++ F+ PS + LVG ALFGDG+ A+IVGSDP + ERPLF+L
Sbjct: 768 NAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLV 827
Query: 238 TAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKM 297
+A Q F+PN+ I G L E G++F L +P +I +N+E + +G + D+N +
Sbjct: 828 SAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENVEKCLTQAFDPLGIS--DWNSL 885
Query: 298 FWAVHPGGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK-MK 356
FW HPGGPAIL+ +E +LNL KL A+R L +YGN SS ++++L+ M ++SLK +
Sbjct: 886 FWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGER 945
Query: 357 SQDHEDTDWGLILAFGPGITFEGILARNL 385
+ E DWG++ FGPG+T E ++ ++
Sbjct: 946 ATTGEGLDWGVLFGFGPGLTIETVVLHSI 974
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/375 (44%), Positives = 234/375 (62%), Gaps = 5/375 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLCKTTTVKTRYVVMSD 72
G AT+LA+GKA P + Q D +F TN +D P LK K R+C + +K R+ +
Sbjct: 33 GPATVLAMGKAVPANVFEQATYPDFFFNITNSNDKPALKAKFQRICDKSGIKKRHFYLDQ 92
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
+IL+ P + ++ R +I V ++A EAS IK WGRP ++ITH+V ++S
Sbjct: 93 KILESNPAMCTYMETSLNCRQEIAVAQVPKLAKEASMNAIKEWGRPKSEITHIVMATTSG 152
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG +L A+ LGL P +RVM+Y G G + LRVAKD+AENN G+RVL SE T
Sbjct: 153 VNMPGAELATAKLLGLRPNVRRVMMYQQGXFAGATVLRVAKDLAENNAGARVLAICSEVT 212
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDP P ERP++E+H A + LP ++ I
Sbjct: 213 AVTFRAPSETHIDGLVGSALFGDGAAAVIVGSDPRPGIERPIYEMHWAGEMVLPESDGAI 272
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
DG LTE G+ F L +++P +I NI GF +G ++ +N++FWAVHPGGPAIL++
Sbjct: 273 DGHLTEAGLVFHLLKDVPGLITKNIGGFLKDTKNLVGASS--WNELFWAVHPGGPAILDQ 330
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKM-KSQDHEDTDWGLILA 370
+E +L L K ASR L DYGN SS ++++VL+ + E SL+ KS E ++WG ++
Sbjct: 331 VEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKSTFGEGSEWGFLIG 390
Query: 371 FGPGITFEGILARNL 385
FGPG+T E +L R L
Sbjct: 391 FGPGLTVETLLLRAL 405
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/378 (42%), Positives = 238/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 15 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 74
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 75 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 134
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y GC G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 135 VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
DG L E G++F L +++P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 255 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 312
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 313 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 371
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 372 GFGPGLTIETVVLRSVAI 389
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 305 bits (781), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 237/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 15 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 74
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 75 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 134
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y G G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 135 VDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
DG L E G++F L +++P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 255 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 312
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 313 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 371
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 372 GFGPGLTIETVVLRSVAI 389
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 305 bits (780), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 237/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 15 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 74
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 75 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 134
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y G G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 135 VDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
DG L E G++F L +++P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 255 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 312
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 313 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 371
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 372 GFGPGLTIETVVLRSVAI 389
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 304 bits (779), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 237/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 15 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 74
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 75 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 134
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y G G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 135 VDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
DG L E G++F L +++P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 255 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 312
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 313 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 371
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 372 GFGPGLTIETVVLRSVAI 389
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 304 bits (779), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 237/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 14 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 73
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 74 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 133
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y G G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 134 VDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 193
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 194 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 253
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
DG L E G++F L +++P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 254 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 311
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 312 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 370
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 371 GFGPGLTIETVVLRSVAI 388
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 303 bits (777), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 241/391 (61%), Gaps = 6/391 (1%)
Query: 1 MGSLAGFAN-KASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLC 58
M S++G + + G AT+LA+G A P V Q D YF+ TN + +LK+K R+C
Sbjct: 2 MVSVSGIRKVQRAEGPATVLAIGTANPPNCVDQSTYADYYFRVTNSEHMTDLKKKFQRIC 61
Query: 59 KTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRP 118
+ T +K R++ +++EILK+ P + P++ R D+ + V ++ EA+ IK WG+P
Sbjct: 62 ERTQIKNRHMYLTEEILKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQP 121
Query: 119 ITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAEN 178
++ ITH+++ ++S LPG D L LGL P +R M+Y GC G + LR+AKD+AEN
Sbjct: 122 MSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAEN 181
Query: 179 NPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELH 237
N +RVL+ SE T + F+ PS LVG ALF DGA A+I+GSDPVP E PLFE+
Sbjct: 182 NKDARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIV 241
Query: 238 TAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKM 297
+ Q +PN+ I G L E G++F L + +P II NI K +G + DYN +
Sbjct: 242 STDQQLVPNSHGAIGGLLREVGLTFYLNKSVPDIISQNINDALSKAFDPLGIS--DYNSI 299
Query: 298 FWAVHPGGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKS 357
FW HPGG AIL+++E+++NL P+K+ A+R L +YGN SS + ++++ M ++SL+
Sbjct: 300 FWIAHPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMRKKSLEAGL 359
Query: 358 QDH-EDTDWGLILAFGPGITFEGILARNLTV 387
+ E DWG++ FGPG+T E ++ R++ +
Sbjct: 360 KTTGEGLDWGVLFGFGPGLTIETVVLRSMAI 390
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 236/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 15 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 74
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 75 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 134
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y G G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 135 VDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
D L E G++F L +++P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 255 DAHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 312
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 313 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 371
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 372 GFGPGLTIETVVLRSVAI 389
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 158/378 (41%), Positives = 235/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 19 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 78
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R + V ++ EA+ IK WG+P + ITH++ S++
Sbjct: 79 EILKENPNVCEYMAPSLDARQAMLAMEVPRLGKEAAVKAIKEWGQPKSKITHLIVCSTTT 138
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
LPG D L + LGL P +RV ++ GC G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 139 PDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAENNKGARVLVVCSEVT 198
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 199 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 258
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
DG L E G++F L +P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 259 DGHLREAGLTFHLKGAVPDIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 316
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 317 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 375
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 376 GFGPGLTIETVVLRSVAI 393
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 236/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 13 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 72
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 73 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 132
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y G G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 133 VDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 192
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 193 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 252
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
DG L E G++F L +++P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 253 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 310
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YG SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 311 VEQKLALKPEKMNATREVLSEYGAMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 369
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 370 GFGPGLTIETVVLRSVAI 387
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 236/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 14 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 73
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 74 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 133
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y G G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 134 VDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 193
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 194 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 253
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
DG L E G++F L +++P I+ NI + +G + DYN +FW PGGPAIL++
Sbjct: 254 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAQPGGPAILDQ 311
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 312 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 370
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 371 GFGPGLTIETVVLRSVAI 388
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 301 bits (771), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 236/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 15 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 74
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 75 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 134
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y G G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 135 VDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
D L E G++F L +++P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 255 DVHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 312
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 313 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 371
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 372 GFGPGLTIETVVLRSVAI 389
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 301 bits (771), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 236/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 15 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 74
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 75 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 134
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y G G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 135 VDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
D L E G++F L +++P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 255 DFHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 312
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 313 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 371
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 372 GFGPGLTIETVVLRSVAI 389
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 301 bits (770), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 236/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 15 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 74
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 75 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 134
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y G G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 135 VDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG ALFGDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 195 AVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
D L E G++F L +++P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 255 DLHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 312
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 313 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 371
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 372 GFGPGLTIETVVLRSVAI 389
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 301 bits (770), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 236/378 (62%), Gaps = 7/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVMSD 72
G ATILA+G A P V Q D YFK TN + ELK+K R+C + +K RY+ +++
Sbjct: 15 GPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTE 74
Query: 73 EILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSE 132
EILK+ P + P++ R D+ V ++ EA+ IK WG+P + ITH++ ++S
Sbjct: 75 EILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSG 134
Query: 133 ARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETT 192
+PG D L + LGL P +R M+Y G G + LR+AKD+AENN G+RVL+ SE T
Sbjct: 135 VDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194
Query: 193 IIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKTI 251
+ F+ PS LVG AL GDGA A+IVGSDPVP E+P+FE+ Q P++E I
Sbjct: 195 AVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAI 254
Query: 252 DGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNK 311
DG L E G++F L +++P I+ NI + +G + DYN +FW HPGGPAIL++
Sbjct: 255 DGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGIS--DYNSIFWIAHPGGPAILDQ 312
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLK--MKSQDHEDTDWGLIL 369
+E++L L P+K+NA+R L +YGN SS ++++L+ M ++S + +K+ E +WG++
Sbjct: 313 VEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTG-EGLEWGVLF 371
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ +
Sbjct: 372 GFGPGLTIETVVLRSVAI 389
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 154/379 (40%), Positives = 233/379 (61%), Gaps = 5/379 (1%)
Query: 12 SPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLCKTTTVKTRYVVM 70
+ G ATILA+G A P V Q D YF+ T + +LK+K R+C+ T +K RY+ +
Sbjct: 18 AQGLATILAIGTATPPNCVAQADYADYYFRVTKSEHMVDLKEKFKRICEKTAIKKRYLAL 77
Query: 71 SDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSS 130
+++ L++ P + P++ R D+ V + EA+ I WG P + ITH+++ ++
Sbjct: 78 TEDYLQENPTMCEFMAPSLNARQDLVVTGVPMLGKEAAVKAIDEWGLPKSKITHLIFCTT 137
Query: 131 SEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSE 190
+ +PG D L + LGLSP +R MLY G + G + LR+AKD+AENN GSRVL+ SE
Sbjct: 138 AGVDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVLIVCSE 197
Query: 191 TTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDP-VPSERPLFELHTAIQNFLPNTEK 249
T I F P+ LV ALFGDGA A+IVGS P + ERP+FE+ + Q LP+TEK
Sbjct: 198 ITAILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPIFEIVSTDQTILPDTEK 257
Query: 250 TIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAIL 309
+ L E G++F+L R++P ++ NIE K + +G T D+N +FW VHPGG AIL
Sbjct: 258 AMKLHLREGGLTFQLHRDVPLMVAKNIENAAEKALSPLGIT--DWNSVFWMVHPGGRAIL 315
Query: 310 NKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESL-KMKSQDHEDTDWGLI 368
+++E++LNL DKL ASR L +YGN S ++++++ + + S+ + KS E D G++
Sbjct: 316 DQVERKLNLKEDKLRASRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVL 375
Query: 369 LAFGPGITFEGILARNLTV 387
FGPG+T E ++ R++ V
Sbjct: 376 FGFGPGMTVETVVLRSVRV 394
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/382 (39%), Positives = 224/382 (58%), Gaps = 5/382 (1%)
Query: 8 ANKASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTR 66
A KA G AT++A+G A P + Q+ D YF+ TN + ELK+K +CK T + R
Sbjct: 23 AQKAD-GTATVMAIGTAHPPHIFPQDTYADVYFRATNSEHKVELKKKFDHICKKTMIGKR 81
Query: 67 YVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVV 126
Y +E LKKYP + P++ R DIC V + EA+ I+ WGRP ++ITH+V
Sbjct: 82 YFNYDEEFLKKYPNITSYDEPSLNDRQDICVPGVPALGTEAAVKAIEEWGRPKSEITHLV 141
Query: 127 YVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLL 186
+ +S +P D A+ LGL + +Y G G + +R AKD+AENN G+RVL+
Sbjct: 142 FCTSCGVDMPSADFQCAKLLGLHANVNKYCIYMQGXYAGGTVMRYAKDLAENNRGARVLV 201
Query: 187 ATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLP 245
+E TI+G + P+ + +G++LFGDGA A+I+GSDP+ E+P+FE+ Q +P
Sbjct: 202 VCAELTIMGLRAPNETHLDNAIGISLFGDGAAALIIGSDPIIGVEKPMFEIVCTKQTVIP 261
Query: 246 NTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFT-NNDYNKMFWAVHPG 304
NTE I L E G+ F L++ P I +N+E + ++G T D+N +FW HPG
Sbjct: 262 NTEDVIHLHLRETGMMFYLSKGSPMTISNNVEACLIDVFKSVGITPPEDWNSLFWIPHPG 321
Query: 305 GPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDH-EDT 363
G AIL+++E +L L P+K A+R L DYGN S ++ Y+L+ M +S + + E
Sbjct: 322 GRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYGEGL 381
Query: 364 DWGLILAFGPGITFEGILARNL 385
+WG++L FGPGIT E IL +L
Sbjct: 382 EWGVLLGFGPGITVETILLHSL 403
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/385 (38%), Positives = 229/385 (59%), Gaps = 5/385 (1%)
Query: 6 GFANKASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLCKTTTVK 64
G A + AT++A+G A P Q D YF+ TN D LKQK RLC+ + ++
Sbjct: 3 GMATEEMKKLATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIE 62
Query: 65 TRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITH 124
RY+ +++EILK+ P +A ++ R + K V ++ EA+ IK WG+P + ITH
Sbjct: 63 KRYLHVTEEILKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITH 122
Query: 125 VVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRV 184
++ + +PG D L + L L P +R M Y +GC G + LR+AKDIAENN G+RV
Sbjct: 123 LIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARV 182
Query: 185 LLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDP-VPSERPLFELHTAIQNF 243
L+ SE T F+ PS ++G ALFGDGA A+IVG+DP + ERP+FEL + Q
Sbjct: 183 LIVCSEMTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTVERPIFELVSTAQTI 242
Query: 244 LPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHP 303
+P + I+G L E G+SF L + +P +I +NI+ + + D+N +FW HP
Sbjct: 243 VPESHGAIEGHLLESGLSFHLYKTVPTLISNNIKTCLSDAFTPLNIS--DWNSLFWIAHP 300
Query: 304 GGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKM-KSQDHED 362
GGPAIL+++ ++ L +KL +R+ L DYGN SS T+ ++++ M ++SL+ ++ E
Sbjct: 301 GGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEG 360
Query: 363 TDWGLILAFGPGITFEGILARNLTV 387
+WG++ FGPGIT E ++ R++ V
Sbjct: 361 LEWGVLFGFGPGITVETVVLRSVPV 385
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 150/382 (39%), Positives = 223/382 (58%), Gaps = 5/382 (1%)
Query: 8 ANKASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTR 66
A KA G AT++A+G A P + Q+ D YF+ TN + ELK+K +CK T + R
Sbjct: 23 AQKAD-GTATVMAIGTAHPPHIFPQDTYADVYFRATNSEHKVELKKKFDHICKKTMIGKR 81
Query: 67 YVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVV 126
Y +E LKKYP + P++ R DIC V + EA+ I+ WGRP ++ITH+V
Sbjct: 82 YFNYDEEFLKKYPNITSYDEPSLNDRQDICVPGVPALGTEAAVKAIEEWGRPKSEITHLV 141
Query: 127 YVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLL 186
+ +S +P D A+ LGL + +Y G G + +R AKD+AENN G+RVL+
Sbjct: 142 FCTSCGVDMPSADFQCAKLLGLHANVNKYCIYMQGXYAGGTVMRYAKDLAENNRGARVLV 201
Query: 187 ATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLP 245
+E TI+ + P+ + +G++LFGDGA A+I+GSDP+ E+P+FE+ Q +P
Sbjct: 202 VCAELTIMMLRAPNETHLDNAIGISLFGDGAAALIIGSDPIIGVEKPMFEIVCTKQTVIP 261
Query: 246 NTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFT-NNDYNKMFWAVHPG 304
NTE I L E G+ F L++ P I +N+E + ++G T D+N +FW HPG
Sbjct: 262 NTEDVIHLHLRETGMMFYLSKGSPMTISNNVEACLIDVFKSVGITPPEDWNSLFWIPHPG 321
Query: 305 GPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDH-EDT 363
G AIL+++E +L L P+K A+R L DYGN S ++ Y+L+ M +S + + E
Sbjct: 322 GRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYGEGL 381
Query: 364 DWGLILAFGPGITFEGILARNL 385
+WG++L FGPGIT E IL +L
Sbjct: 382 EWGVLLGFGPGITVETILLHSL 403
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/385 (38%), Positives = 228/385 (59%), Gaps = 5/385 (1%)
Query: 6 GFANKASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLCKTTTVK 64
G A + AT++A+G A P Q D YF+ TN D LKQK RLC+ + ++
Sbjct: 3 GMATEEMKKLATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIE 62
Query: 65 TRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITH 124
RY+ +++EILK+ P +A ++ R + K V ++ EA+ IK WG+P + ITH
Sbjct: 63 KRYLHVTEEILKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITH 122
Query: 125 VVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRV 184
++ + +PG D L + L L P +R M Y +GC G + LR+AKDIAENN G+RV
Sbjct: 123 LIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARV 182
Query: 185 LLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDP-VPSERPLFELHTAIQNF 243
L+ SE T F+ PS ++G A+ GDGA A+IVG+DP + ERP+FEL + Q
Sbjct: 183 LIVCSEMTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERPIFELVSTAQTI 242
Query: 244 LPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHP 303
+P + I+G L E G+SF L + +P +I +NI+ + + D+N +FW HP
Sbjct: 243 VPESHGAIEGHLLESGLSFHLYKTVPTLISNNIKTCLSDAFTPLNIS--DWNSLFWIAHP 300
Query: 304 GGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKM-KSQDHED 362
GGPAIL+++ ++ L +KL +R+ L DYGN SS T+ ++++ M ++SL+ ++ E
Sbjct: 301 GGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEG 360
Query: 363 TDWGLILAFGPGITFEGILARNLTV 387
+WG++ FGPGIT E ++ R++ V
Sbjct: 361 LEWGVLFGFGPGITVETVVLRSVPV 385
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 282 bits (722), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 235/378 (62%), Gaps = 6/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNT-NCDDPELKQKLTRLCKTTTVKTRYVVMSD 72
G A+ILA+G A P V Q D YF+ T N + ELK K R+C+ + +K RY+ +++
Sbjct: 37 GFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYMYLTE 96
Query: 73 EILKKYPEL-AIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSS 131
EILKK P++ A +P++ R + V ++A EA++ I+ WG+ + ITH+++ S++
Sbjct: 97 EILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCSTT 156
Query: 132 EARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSET 191
LPG D +A+ LGL P +RV ++ GC G + LR+AKD+AENN G+RVL+ SET
Sbjct: 157 TPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSET 216
Query: 192 TIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKT 250
T + F+ PS LVG ALFGDGA A+IVG+DP+P E+ FE+ Q +PN+E
Sbjct: 217 TAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPNSEGA 276
Query: 251 IDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILN 310
I G++ E G++F+L +P +I NIE + F +D+NK+FW VHPGG AIL+
Sbjct: 277 IGGKVREVGLTFQLKGAVPDLISANIENCMVEAFSQ--FKISDWNKLFWVVHPGGRAILD 334
Query: 311 KLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMK-SQDHEDTDWGLIL 369
++E +LNL P KL +R + +YGN SS + ++L+ + SL+ S E + G++
Sbjct: 335 RVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVLF 394
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ +++ +
Sbjct: 395 GFGPGLTIETVVLKSVPI 412
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 281 bits (720), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 235/378 (62%), Gaps = 6/378 (1%)
Query: 14 GKATILALGKAFPHQLVMQEFLVDGYFKNT-NCDDPELKQKLTRLCKTTTVKTRYVVMSD 72
G A+ILA+G A P V Q D YF+ T N + ELK K R+C+ + +K RY+ +++
Sbjct: 21 GFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYMYLTE 80
Query: 73 EILKKYPEL-AIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSS 131
EILKK P++ A +P++ R + V ++A EA++ I+ WG+ + ITH+++ S++
Sbjct: 81 EILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCSTT 140
Query: 132 EARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSET 191
LPG D +A+ LGL P +RV ++ GC G + LR+AKD+AENN G+RVL+ SET
Sbjct: 141 TPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSET 200
Query: 192 TIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEKT 250
T + F+ PS LVG ALFGDGA A+IVG+DP+P E+ FE+ Q +PN+E
Sbjct: 201 TAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPNSEGA 260
Query: 251 IDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILN 310
I G++ E G++F+L +P +I NIE + F +D+NK+FW VHPGG AIL+
Sbjct: 261 IGGKVREVGLTFQLKGAVPDLISANIENCMVEAFSQ--FKISDWNKLFWVVHPGGRAILD 318
Query: 311 KLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMK-SQDHEDTDWGLIL 369
++E +LNL P KL +R + +YGN SS + ++L+ + SL+ S E + G++
Sbjct: 319 RVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVLF 378
Query: 370 AFGPGITFEGILARNLTV 387
FGPG+T E ++ +++ +
Sbjct: 379 GFGPGLTIETVVLKSVPI 396
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 281 bits (718), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 228/377 (60%), Gaps = 5/377 (1%)
Query: 12 SPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVM 70
+ G ATI+A+G A P L Q D YF+ TN DD ELK+K R+C+ T VK RY+ +
Sbjct: 13 AQGPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRYLHL 72
Query: 71 SDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSS 130
++EILK+ P+L + R DI + + ++A EA++ IK WGRP ++ITH+V+ S
Sbjct: 73 TEEILKERPKLCSYKEASFDDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHLVFCSI 132
Query: 131 SEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSE 190
S +PG D LA LGL R+M+Y C G + LR+AKD+AENN G+RVL+ E
Sbjct: 133 SGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVLVVACE 192
Query: 191 TTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEK 249
T++ F+ P+ L G A FGDGAGA++VG+DP+ E+P++E+ A+Q + ++
Sbjct: 193 ITVLSFRGPNEGDFEALAGQAGFGDGAGAVVVGADPLEGIEKPIYEIAAAMQETVAESQG 252
Query: 250 TIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAIL 309
+ G L G +F +LP II DN+ + + +G ++N +FW HPG AI+
Sbjct: 253 AVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGV--REWNDVFWVAHPGNWAII 310
Query: 310 NKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEES-LKMKSQDHEDTDWGLI 368
+ +E +L L PDKL+ +R +YGN S T+ +V++ + + S ++ +S + WG++
Sbjct: 311 DAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQWGVL 370
Query: 369 LAFGPGITFEGILARNL 385
L FGPG++ E ++ R++
Sbjct: 371 LGFGPGLSIETVVLRSM 387
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 277 bits (708), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 227/377 (60%), Gaps = 5/377 (1%)
Query: 12 SPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDP-ELKQKLTRLCKTTTVKTRYVVM 70
+ G ATI+A+G A P L Q D YF+ TN DD ELK+K R+C+ T VK RY+ +
Sbjct: 13 AQGPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRYLHL 72
Query: 71 SDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSS 130
++EILK+ P+L + R DI + + ++A EA++ IK WGRP ++ITH+V+ S
Sbjct: 73 TEEILKERPKLCSYKEASFDDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHLVFCSI 132
Query: 131 SEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSE 190
S +PG D LA LGL R+M+Y C G + LR+AKD+AENN G+RVL+ E
Sbjct: 133 SGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVLVVACE 192
Query: 191 TTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPS-ERPLFELHTAIQNFLPNTEK 249
T++ F+ P+ L A FGDGAGA++VG+DP+ E+P++E+ A+Q + ++
Sbjct: 193 ITVLSFRGPNEGDFEALAFQAGFGDGAGAVVVGADPLEGIEKPIYEIAAAMQETVAESQG 252
Query: 250 TIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAIL 309
+ G L G +F +LP II DN+ + + +G ++N +FW HPG AI+
Sbjct: 253 AVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGV--REWNDVFWVAHPGNWAII 310
Query: 310 NKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEES-LKMKSQDHEDTDWGLI 368
+ +E +L L PDKL+ +R +YGN S T+ +V++ + + S ++ +S + WG++
Sbjct: 311 DAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQWGVL 370
Query: 369 LAFGPGITFEGILARNL 385
L FGPG++ E ++ R++
Sbjct: 371 LGFGPGLSIETVVLRSM 387
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 220/376 (58%), Gaps = 4/376 (1%)
Query: 9 NKASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLCKTTTVKTRY 67
++ + G A +LA+G A P V QE + D YF+ TN D LK K R+C+ V+ RY
Sbjct: 4 SQRADGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRRY 63
Query: 68 VVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVY 127
+ ++E+L +PE P++ RLDI AV ++A EA++ I WGRP DITH+V
Sbjct: 64 LHHTEEMLSAHPEFVDRDAPSLDARLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVV 123
Query: 128 VSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLA 187
++S A +PG D L LGL P +R ML+ GC G + LR+AKD+AEN+ G+RVL+
Sbjct: 124 TTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVV 183
Query: 188 TSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNT 247
+E T++ F P L+ LFGDGA A+IVG+D ERPLFE+ +A Q +P +
Sbjct: 184 AAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQTIIPES 243
Query: 248 EKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLM--GNIGFTNNDYNKMFWAVHPGG 305
+ ++ R TE + L R++P +I DN+E + G +N +FWAVHPG
Sbjct: 244 DHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLDMFGPLLGGDGGGGWNDLFWAVHPGS 303
Query: 306 PAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDW 365
I+++++ L L P KL ASRR L DYGN S T+++ L+ L K + E +
Sbjct: 304 STIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDE-LRRQRKEAAAAGEWPEL 362
Query: 366 GLILAFGPGITFEGIL 381
G+++AFGPG+T + +L
Sbjct: 363 GVMMAFGPGMTVDAML 378
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 220/376 (58%), Gaps = 4/376 (1%)
Query: 9 NKASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDD-PELKQKLTRLCKTTTVKTRY 67
++ + G A +LA+G A P V QE + D YF+ TN D LK K R+C+ V+ RY
Sbjct: 34 SQRADGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRRY 93
Query: 68 VVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVY 127
+ ++E+L +PE P++ RLDI AV ++A EA++ I WGRP DITH+V
Sbjct: 94 LHHTEEMLSAHPEFVDRDAPSLDARLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVV 153
Query: 128 VSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLA 187
++S A +PG D L LGL P +R ML+ GC G + LR+AKD+AEN+ G+RVL+
Sbjct: 154 TTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVV 213
Query: 188 TSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNT 247
+E T++ F P L+ LFGDGA A+IVG+D ERPLFE+ +A Q +P +
Sbjct: 214 AAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQTIIPES 273
Query: 248 EKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLM--GNIGFTNNDYNKMFWAVHPGG 305
+ ++ R TE + L R++P +I DN+E + G +N +FWAVHPG
Sbjct: 274 DHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLDMFGPLLGGDGGGGWNDLFWAVHPGS 333
Query: 306 PAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDW 365
I+++++ L L P KL ASRR L DYGN S T+++ L+ L K + E +
Sbjct: 334 STIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDE-LRRQRKEAAAAGEWPEL 392
Query: 366 GLILAFGPGITFEGIL 381
G+++AFGPG+T + +L
Sbjct: 393 GVMMAFGPGMTVDAML 408
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 194/390 (49%), Gaps = 23/390 (5%)
Query: 2 GSLAGFANKASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDPELKQKLTRLCKTT 61
GSL+ + K S + +L +G + P + + Q+ L D N D E +K+ R+ + +
Sbjct: 1 GSLSRLSYK-SNNNSFVLGIGISVPGEPISQQSLKDS-ISNDFSDKAETNEKVKRIFEQS 58
Query: 62 TVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITD 121
+KTR++V + K + L T+ + K V +A +A +K WG D
Sbjct: 59 QIKTRHLVR--DYTKPENSIKFRHLETITDVNNQFKKVVPDLAQQACLRALKDWGGDKGD 116
Query: 122 ITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPG 181
ITH+V V+S+ +P + L LGL+ + +RV L MGC G+S LR A +A+ +P
Sbjct: 117 ITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPR 176
Query: 182 SRVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPSERPLFELHTAIQ 241
+R+L+ +E + F + + +V ++F DG+ A I+G +P E PL+E+ +I
Sbjct: 177 NRILVVCTEVCSLHFS--NTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSIN 234
Query: 242 NFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFC------GKLMGNIGFTNNDYN 295
PNTE + L +EG + L +P +I IE F KL + + D
Sbjct: 235 RSFPNTENAMVWDLEKEGWNLGLDASIPIVIGSGIEAFVDTLLDKAKLQTSTAISAKDCE 294
Query: 296 KMFWAVHPGGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKM 355
+ +H GG +IL +E L + P + + YGN SS ++++V+++ + K
Sbjct: 295 ---FLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDH----ARKS 347
Query: 356 KSQDHEDTDWGLILAFGPGITFEGILARNL 385
KS + + LAFGPG+ FEG +N+
Sbjct: 348 KSL----PTYSISLAFGPGLAFEGCFLKNV 373
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 167/337 (49%), Gaps = 13/337 (3%)
Query: 47 DPELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIE 106
DP ++++ R+ + + + TR + + D + K+ E T++ R+ + + +A++
Sbjct: 62 DPGQRERIPRVYQKSRITTRRMAV-DPLDAKFDVFRREP-ATIRDRMHLFYEHAVPLAVD 119
Query: 107 ASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGV 166
S+ + +I +V +S+ PG D+ + + LGLSP RV++ FMGC+ +
Sbjct: 120 VSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAM 179
Query: 167 SGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDP 226
+ L A + +P + L+ E + A+ D+V +LFGDG A+++G+
Sbjct: 180 NALGTATNYVRAHPAMKALVVCIE--LFSVNAVFADDINDVVIHSLFGDGCAALVIGASQ 237
Query: 227 VPS--ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLM 284
V E + ++ L NTE I + GI+ +L+ LP I + +++
Sbjct: 238 VQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEML 297
Query: 285 GNIGFTNNDYNKMFWAVHPGGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYV 344
+ G +D + WA+HPGGP I+ + + L + + S L +GN S ++++V
Sbjct: 298 WDNGLQISDID--LWAIHPGGPKIIEQSVRSLGISAELAAQSWDVLARFGNMLSVSLIFV 355
Query: 345 LEYMLEESLKMKSQDHEDTDWGLILAFGPGITFEGIL 381
LE M++++ K+ G+ AFGPG+T EG+L
Sbjct: 356 LETMVQQAESAKA-----ISTGVAFAFGPGVTVEGML 387
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 167/337 (49%), Gaps = 13/337 (3%)
Query: 47 DPELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIE 106
DP ++++ R+ + + + TR + + D + K+ E T++ R+ + + +A++
Sbjct: 62 DPGQRERIPRVYQKSRITTRRMAV-DPLDAKFDVFRREP-ATIRDRMHLFYEHAVPLAVD 119
Query: 107 ASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGV 166
S+ + +I +V +S+ PG D+ + + LGLSP RV++ FMGC+ +
Sbjct: 120 VSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAM 179
Query: 167 SGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDP 226
+ L A + +P + L+ E + A+ D+V +LFGDG A+++G+
Sbjct: 180 NALGTATNYVRAHPAMKALVVCIE--LCSVNAVFADDINDVVIHSLFGDGCAALVIGASQ 237
Query: 227 VPS--ERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLM 284
V E + ++ L NTE I + GI+ +L+ LP I + +++
Sbjct: 238 VQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEML 297
Query: 285 GNIGFTNNDYNKMFWAVHPGGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYV 344
+ G +D + WA+HPGGP I+ + + L + + S L +GN S ++++V
Sbjct: 298 WDNGLQISDID--LWAIHPGGPKIIEQSVRSLGISAELAAQSWDVLARFGNMLSVSLIFV 355
Query: 345 LEYMLEESLKMKSQDHEDTDWGLILAFGPGITFEGIL 381
LE M++++ K+ G+ AFGPG+T EG+L
Sbjct: 356 LETMVQQAESAKA-----ISTGVAFAFGPGVTVEGML 387
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 185/375 (49%), Gaps = 19/375 (5%)
Query: 17 TILALGKAFPHQLVMQEFLVDGYFKNTNCDDPELKQKLTRLCKTTTVKTRYVVMSDEILK 76
+I LG +P + +D K + + P +K+ L + + T + R + + +
Sbjct: 33 SITGLGVQYP-PYSLGPDAIDILSKRYHPESPAMKKVLA-INRYTGIDQRSSIGNPD--- 87
Query: 77 KYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLP 136
+P + PTVK+ ++ +A+EAS+ + ITH+V + +++ P
Sbjct: 88 -HPLVNKPNPPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANP 146
Query: 137 GGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDI-----AENNPGSRVLLATS-E 190
G D Y+A+ LGLS ++V+L+ +GCSGG++ LR A ++ A P ++LA
Sbjct: 147 GYDHYVAKELGLSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVS 206
Query: 191 TTIIGFKPPSAERPYDL-VGVALFGDGAGAMIV--GSDPVPSERPLFELHTAIQNFLPNT 247
TT++ + S + + +G+ALF D A A+I+ G P + +++L +P++
Sbjct: 207 TTMVRSELESIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDS 266
Query: 248 EKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNIGFT-NNDYNK---MFWAVHP 303
E + + G L+ +P + + +++ L+ ++ + Y K WA+HP
Sbjct: 267 EHDLGFDVDPMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHP 326
Query: 304 GGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDT 363
GG IL+ E + L P+ + AS +++GN+SS TI VL + E+ + + +
Sbjct: 327 GGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK 386
Query: 364 DWGLILAFGPGITFE 378
++ + AFGPGI E
Sbjct: 387 EYVVGCAFGPGINVE 401
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 185/375 (49%), Gaps = 19/375 (5%)
Query: 17 TILALGKAFPHQLVMQEFLVDGYFKNTNCDDPELKQKLTRLCKTTTVKTRYVVMSDEILK 76
+I LG +P + +D K + + P +K+ L + + T + R + + +
Sbjct: 4 SITGLGVQYP-PYSLGPDAIDILSKRYHPESPAMKKVLA-INRYTGIDQRSSIGNPD--- 58
Query: 77 KYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLP 136
+P + PTVK+ ++ +A+EAS+ + ITH+V + +++ P
Sbjct: 59 -HPLVNKPNPPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANP 117
Query: 137 GGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDI-----AENNPGSRVLLATS-E 190
G D Y+A+ LGLS ++V+L+ +G SGG++ LR A ++ A P ++LA
Sbjct: 118 GYDHYVAKELGLSDRLEKVLLHGIGXSGGLAALRTAANLCLGHTARGKPARILVLALEVS 177
Query: 191 TTIIGFKPPSAERPYDL-VGVALFGDGAGAMIV--GSDPVPSERPLFELHTAIQNFLPNT 247
TT++ + S + + +G+ALF D A A+I+ G P + +++L +P++
Sbjct: 178 TTMVRSELESIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDS 237
Query: 248 EKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNI-GFTNNDYNK---MFWAVHP 303
E + G + G L+ +P + + +++ L+ ++ + Y K WA+HP
Sbjct: 238 EHDLGGDVDPMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHP 297
Query: 304 GGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDT 363
GG IL+ E + L P+ + AS +++GN+SS TI VL + E+ + + +
Sbjct: 298 GGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK 357
Query: 364 DWGLILAFGPGITFE 378
++ + AFGPGI E
Sbjct: 358 EYVVGCAFGPGINVE 372
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 184/375 (49%), Gaps = 19/375 (5%)
Query: 17 TILALGKAFPHQLVMQEFLVDGYFKNTNCDDPELKQKLTRLCKTTTVKTRYVVMSDEILK 76
+I LG +P + +D K + + P +K+ L + + T + R + + +
Sbjct: 4 SITGLGVQYP-PYSLGPDAIDILSKRYHPESPAMKKVLA-INRYTGIDQRSSIGNPD--- 58
Query: 77 KYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLP 136
+P + PTVK+ ++ +A+EAS+ + ITH+V + +++ P
Sbjct: 59 -HPLVNKPNPPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANP 117
Query: 137 GGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDI-----AENNPGSRVLLATS-E 190
G D Y+A+ LGLS ++V+L+ +G SGG++ LR A ++ A P ++LA
Sbjct: 118 GYDHYVAKELGLSDRLEKVLLHGIGXSGGLAALRTAANLCLGHTARGKPARILVLALEVS 177
Query: 191 TTIIGFKPPSAERPYDL-VGVALFGDGAGAMIV--GSDPVPSERPLFELHTAIQNFLPNT 247
TT++ + S + + +G+ALF D A A+I+ G P + +++L +P++
Sbjct: 178 TTMVRSELESIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDS 237
Query: 248 EKTIDGRLTEEGISFKLARELPQIIEDNIEGFCGKLMGNI-GFTNNDYNK---MFWAVHP 303
E + + G L+ +P + + +++ L+ ++ + Y K WA+HP
Sbjct: 238 EHDLGFDVDPMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHP 297
Query: 304 GGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDT 363
GG IL+ E + L P+ + AS +++GN+SS TI VL + E+ + + +
Sbjct: 298 GGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK 357
Query: 364 DWGLILAFGPGITFE 378
++ + AFGPGI E
Sbjct: 358 EYVVGCAFGPGINVE 372
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 157/356 (44%), Gaps = 33/356 (9%)
Query: 27 HQLVMQEFLVDGYFKNTNCDDPELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGL 86
H + M+E L ++T D P+L L RL + T V+TR++V E ++P E
Sbjct: 22 HVITMEETLELARRRHT--DHPQLPLAL-RLIENTGVRTRHIVQPIEDTLEHP--GFEDR 76
Query: 87 PTVKQRLDICN-KAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARG 145
V +R AV Q A++ ++ TDI ++YVS + +P +L
Sbjct: 77 NKVYEREAKSRVPAVIQRALDDAELLA-------TDIDVIIYVSCTGFMMPSLTAWLINE 129
Query: 146 LGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPY 205
+G T+++ + +GC+ G + + A D P + L+ E + ++P
Sbjct: 130 MGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQPTDLGVG- 188
Query: 206 DLVGVALFGDGAGAMIV---GSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISF 262
L+ LFGDG A +V G V ER L +P TE I + G F
Sbjct: 189 SLLCNGLFGDGIAAAVVRGRGGTGVRLERNGSYL-------IPKTEDWIMYDVKATGFHF 241
Query: 263 KLARELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNKLEKRLNLLPDK 322
L + +P +E +L G G+ +D + F+ VH GGP IL+ L L + P
Sbjct: 242 LLDKRVPATMEPLAPAL-KELAGEHGWDASDLD--FYIVHAGGPRILDDLSTFLEVDPHA 298
Query: 323 LNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDWGLILAFGPGITFE 378
SR L +YGN +S ++ L + +E E+ GL+ FGPGIT E
Sbjct: 299 FRFSRATLTEYGNIASAVVLDALRRLFDEG------GVEEGARGLLAGFGPGITAE 348
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 28/225 (12%)
Query: 161 GCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAM 220
CSG + L +A ++ VL+ +E K A D LFGDGAGA+
Sbjct: 110 ACSGFIYALDIADSFIKSGKAKNVLVIGAE------KLSEAVDWEDRSTCVLFGDGAGAV 163
Query: 221 IVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISF--KLARELPQIIEDNIEG 278
+V S+ ++ E +++ L + + REL ++ ++E
Sbjct: 164 VVTRSEDKSDILATRMY---------AEGSLEELLHADNCGYIRMKGRELFKVAVRSMEE 214
Query: 279 FCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNKLEKRLNLLPDKLNASRRALMDYGNASS 338
C +++ G + + + H I+N L ++LN+ +K+ + + YGN S+
Sbjct: 215 VCREVLEKAGVKPEEVSLVI--PHQANVRIINALAEKLNIPKEKVFVN---IQKYGNTSA 269
Query: 339 NTIVYVLEYMLEESLKMKSQDHEDTDWGLILAFGPGITFEGILAR 383
+I L ++E K+K D L+ A G G+T+ +L R
Sbjct: 270 ASIPIALHEAIKEG-KVKR-----GDLILMTAMGGGLTWGAVLLR 308
>pdb|1MZJ|A Chain A, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
pdb|1MZJ|B Chain B, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
Length = 339
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 95/245 (38%), Gaps = 66/245 (26%)
Query: 162 CSGGVSGLRVAKDIAENNPGSRVLLATSE--TTIIGFKPPSAERPYDLVGVALFGDGAGA 219
C+G L +A D E+ VL+ +E T +I A+R LFGDGAGA
Sbjct: 121 CAGFCHALSIAADAVESGGSRHVLVVATERMTDVIDL----ADRSLSF----LFGDGAGA 172
Query: 220 MIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGF 279
+VG VP P+ + IDG T G S ++ Q +ED G
Sbjct: 173 AVVGPSDVPGIGPVV--------------RGIDG--TGLG-SLHMSSSWDQYVEDPSVGR 215
Query: 280 CGKLMGNIGFTNNDYNKMF-WAVHPGGPAILNKLE-------------------KRLNLL 319
+M D ++F WAV PA LE + +++L
Sbjct: 216 PALVM--------DGKRVFRWAVADVVPAAREALEVAGLTVGDLVAFVPHQANLRIIDVL 267
Query: 320 PDKLNASRRALM-----DYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDWGLILAFGPG 374
D+L ++ D GN SS ++ L+ ++ +S L++ FG G
Sbjct: 268 VDRLGVPEHVVVSRDAEDTGNTSSASVALALDRLV------RSGAVPGGGPALMIGFGAG 321
Query: 375 ITFEG 379
+++ G
Sbjct: 322 LSYAG 326
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Query: 68 VVMSDEILKKYPELAIEGLPTV----KQRLDICNKAVTQMAIEASQACIKSWGRPITDIT 123
V+ +D + + YP+ E + ++R+ + +A EA++ +
Sbjct: 44 VLTNDVLAQLYPDWPAEKILAKTGIRERRIAAPRETAADLAYEAARKLFAQGAVGADQVD 103
Query: 124 HVVYVSSS-EARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGS 182
V+ + + + LP L LG+ P + +GCSG V GL +AK + E
Sbjct: 104 FVILCTQAPDYVLPTSACMLQHRLGI-PTHAGALDVNLGCSGYVYGLSLAKGLVETGAAR 162
Query: 183 RVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIV 222
VLL T++T P D LFGDGA A V
Sbjct: 163 CVLLLTADTY------SKYLHPLDKSVRTLFGDGASATAV 196
>pdb|3SQZ|A Chain A, Crystal Structure Of Hmg_coa Synthase Complexed With Coa
Length = 389
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 125 VVYVSSSEARLPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRV 184
++ SS + G +Y+ LG+ P + + C + L AK E +P +RV
Sbjct: 75 ILATESSVDQSKAGAVYVHSLLGIQPFARSFEMKEAXCYSATAALNYAKLHVEKHPDTRV 134
Query: 185 LLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDP 226
L+ S+ G P G + G G+ AM+V DP
Sbjct: 135 LVLASDIAKYGIGTP---------GESTQGAGSIAMLVKKDP 167
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 204 PYDLVGVALFGDGAGAMIVGSDPVP--------SERPLFELHTAIQNFLPNTEKTIDGRL 255
P D + +FGDGAGA ++ + P ++ EL T N E +I L
Sbjct: 148 PTDRGTIIIFGDGAGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSI--HL 205
Query: 256 TEEGIS-FKLA-RELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAV-HPGGPAILNKL 312
T G FK+A EL I+++ + NND +++ W V H I++
Sbjct: 206 TXAGNEVFKVAVTELAHIVDETLAA-----------NNNDRSQLDWLVPHQANLRIISAT 254
Query: 313 EKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDWGLILAFG 372
K+L D + + L +GN S+ ++ L+ + + Q L+ AFG
Sbjct: 255 AKKLGXSXDNVVVT---LDRHGNTSAASVPCALDEAVRDGRIKPGQ------LVLLEAFG 305
Query: 373 PGITFEGILAR 383
G T+ L R
Sbjct: 306 GGFTWGSALVR 316
>pdb|3LED|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii From Rhodopseudomonas Palustris Cga009
pdb|3LED|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii From Rhodopseudomonas Palustris Cga009
Length = 392
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 19/167 (11%)
Query: 59 KTTTVKTRYVVMSDEILKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRP 118
K + +K+RYVV I+ P++ P + +R + + + A+ A++ I+ WG+P
Sbjct: 81 KASGIKSRYVVAKPGIVD--PDVX---RPIIPERSNDELSILAEXAVTAAEQAIERWGKP 135
Query: 119 ITDITHVVYVSSSEAR-LPGGDLYLARGLGLSPETQRVMLYFMGCSGGVSGLRVAKDIAE 177
I V+ S+ R P + + LGL + CS GL+ A D
Sbjct: 136 RERIGAVLCACSNXQRAYPAXAIEVQNALGLG---GFAFDXNVACSSATFGLKTAADFVG 192
Query: 178 NNPGSRVLLATSE--TTIIGFKPPSAERPYDLVGVALFGDGAGAMIV 222
VL E + + F+ D +FGD A A IV
Sbjct: 193 GGSVDAVLXVNPEICSGHLNFR--------DRDSHFIFGDVATAAIV 231
>pdb|1WOV|A Chain A, Crystal Strucure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme
pdb|1WOV|B Chain B, Crystal Strucure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme
pdb|1WOW|A Chain A, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 Complexed With Heme In Ferrous Form
pdb|1WOW|B Chain B, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 Complexed With Heme In Ferrous Form
pdb|1WOX|A Chain A, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme And No
pdb|1WOX|B Chain B, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme And No
Length = 250
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 214 GDGAGAMIVGSDPVPSERPLF-ELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQII 272
G+G S P P +R F E++ + N LP E TI+ + E +F L RE+ +
Sbjct: 150 GEGTAMYEFDSLPTPGDRRQFKEIYRDVLNSLPLDEATINRIVEEANYAFSLNREVMHDL 209
Query: 273 EDNIEGFCGK 282
ED I+ G+
Sbjct: 210 EDLIKAAIGE 219
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 96 CNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRV 155
++ + A A++A + + D+ +V SS + L R +G+ P R
Sbjct: 47 ISQDIVTFAANAAEAILTKEDKEAIDMV-IVGTESSIDESKAAAVVLHRLMGIQP-FARS 104
Query: 156 MLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGD 215
GC G +GL++AK+ +P +VL+ ++ G S P G
Sbjct: 105 FEIKEGCYGATAGLQLAKNHVALHPDKKVLVVAADIAKYGLN--SGGEPTQ-------GA 155
Query: 216 GAGAMIVGSDP 226
GA AM+V S+P
Sbjct: 156 GAVAMLVASEP 166
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 34/189 (17%)
Query: 206 DLVGVALFGDGAGAMIVGSDPVPSERPLFELH---TAIQN---FLPNTEKTID--GRLTE 257
D V LFGDGAGA+I+ + + H +A +N L E+ I+ G +
Sbjct: 157 DRSTVVLFGDGAGAVIL---EASEQEGIISTHLHASADKNNALVLAQPERGIEKSGYIEM 213
Query: 258 EG-ISFKLA-RELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAV-HPGGPAILNKLEK 314
+G +FKLA REL ++E+ L+ N N D + W V H I+ K
Sbjct: 214 QGNETFKLAVRELSNVVEET-------LLAN----NLDKKDLDWLVPHQANLRIITATAK 262
Query: 315 RLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDWGLILAFGPG 374
+L + ++ + L Y N S+ T+ L+ + + + Q L+ AFG G
Sbjct: 263 KLEMDMSQVVVT---LDKYANNSAATVPVALDEAIRDGRIQRGQ------LLLLEAFGGG 313
Query: 375 ITFEGILAR 383
T+ L R
Sbjct: 314 WTWGSALVR 322
>pdb|4EFI|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase From Burkholderia Xenovorans Lb400
Length = 354
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 62/319 (19%), Positives = 123/319 (38%), Gaps = 23/319 (7%)
Query: 49 ELKQKLTRLCKTTTVKTRYVVMSDEILKKYPELAIEGLPTV----KQRLDICNKAVTQMA 104
EL+ + R+ + V +D ++++ A+ + + ++R + +
Sbjct: 11 ELRTQGARIAGVVSCVPSKQVDNDYFVERFDASAVRDVVKMIGVNRRRWADAQTSAGDLC 70
Query: 105 IEASQACIKSWGRPITDITHVVYVSSS-EARLPGGDLYLARGLGLSPETQRVMLYFMGCS 163
+A + + G I +++VS + RLP L L L P + + +GCS
Sbjct: 71 RKAGEKLLAGLGWQADSIDALIFVSQTPNYRLPATAFVLQAELDL-PASCLALDINLGCS 129
Query: 164 GGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVA--------LFGD 215
G L + ++ + RVLLA + TI P+ L G A GD
Sbjct: 130 GYPQALWLGMNLIQTGAAKRVLLAVGD-TISKMIDPTDRSTSLLFGDAGTMTALETSNGD 188
Query: 216 GAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDN 275
A I+G+D R L + + ++ + G+ E F E+ +
Sbjct: 189 AAAHFIIGADG-KGARNLIVPSGGFKPYDAAADERMAGKSPE--CLFMDGGEIFNFTLNA 245
Query: 276 IEGFCGKLMGNIGFTNNDYNKMFWAVHPGGPAILNKLEKRLNLLPDKLNASRRALMDYGN 335
+ + + G + Y+ + H +L L K+ L +++ + + +YGN
Sbjct: 246 VPKLVSRTLDIAGRDKDSYDAFLF--HQANLFMLKHLAKKAGLPAERVPVN---IGEYGN 300
Query: 336 ASSNTIVYVLEYMLEESLK 354
S +I ++ L++ LK
Sbjct: 301 TSCASIPLLITTELKDRLK 319
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 116/306 (37%), Gaps = 56/306 (18%)
Query: 97 NKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEAR-LPGGDLYLARGLGLSPETQRV 155
N+ V+ M EA+ I+ G I +V ++S P + LG+ +
Sbjct: 48 NETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGI--KGCPA 105
Query: 156 MLYFMGCSGGVSGLRVAKDIAENNP-------GSRVLLATSETTIIGFKPPSAERPYDLV 208
C+G L VA ++ GS VL T + P D
Sbjct: 106 FDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCD-------------PTDRG 152
Query: 209 GVALFGDGAGAMIVGSDPVP--------SERPLFELHTAIQNFLPNTEKTIDGRLTEEGI 260
+ +FGDGAGA ++ + P ++ EL T N E +I LT G
Sbjct: 153 TIIIFGDGAGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSI--HLTMAGN 210
Query: 261 S-FKLA-RELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAV-HPGGPAILNKLEKRLN 317
FK+A EL I+++ + N D +++ W V H I++ K+L
Sbjct: 211 EVFKVAVTELAHIVDETLAA-----------NNLDRSQLDWLVPHQANLRIISATAKKLG 259
Query: 318 LLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDWGLILAFGPGITF 377
+ D + + L +GN S+ ++ L+ + + Q L+ AFG G T+
Sbjct: 260 MSMDNVVVT---LDRHGNTSAASVPCALDEAVRDGRIKPGQ------LVLLEAFGGGFTW 310
Query: 378 EGILAR 383
L R
Sbjct: 311 GSALVR 316
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 117/290 (40%), Gaps = 42/290 (14%)
Query: 97 NKAVTQMAIEASQACIKSWGRPITDITHVVYVSSS-EARLPGGDLYLARGLGLSPETQRV 155
++ + +A EAS I G DI ++ +++ + P L LG
Sbjct: 48 DQDTSDLAYEASVKAIADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLGTGKVAS-- 105
Query: 156 MLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGD 215
M CSG + + AK ++ +L+ ++ K D LFGD
Sbjct: 106 MDQLAACSGFMYSMITAKQYVQSGDYHNILVVGAD------KLSKITDLTDRSTAVLFGD 159
Query: 216 GAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDN 275
GAGA+I+G V R I ++ ++ T L + + KL ++ +
Sbjct: 160 GAGAVIIG--EVSEGR-------GIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFK-- 208
Query: 276 IEGFCGKLMGNIG--------FTNNDYNKMFWAVHPGGPAILNKLEKRLNLLPDKLNASR 327
F ++MG+ T++D + + H I+ +RL + DK++ S
Sbjct: 209 ---FAVRIMGDASTRVVEKANLTSDDID--LFIPHQANIRIMESARERLGISKDKMSVS- 262
Query: 328 RALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDWGLILAFGPGITF 377
+ YGN S+ +I ++ L+ K+K D D +++ FG G+T+
Sbjct: 263 --VNKYGNTSAASIPLSIDQELKNG-KLK-----DDDTIVLVGFGGGLTW 304
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 96 CNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRV 155
++ + A A++A + + D+ +V SS + L R +G+ P R
Sbjct: 47 ISQDIVTFAANAAEAILTKEDKEAIDMV-IVGTESSIDESKAAAVVLHRLMGIQP-FARS 104
Query: 156 MLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGD 215
C G +GL++AK+ +P +VL+ ++ G S P G
Sbjct: 105 FEIKEACYGATAGLQLAKNHVALHPDKKVLVVAADIAKYGLN--SGGEPTQ-------GA 155
Query: 216 GAGAMIVGSDP 226
GA AM+V S+P
Sbjct: 156 GAVAMLVASEP 166
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 96 CNKAVTQMAIEASQACIKSWGRPITDITHVVYVSSSEARLPGGDLYLARGLGLSPETQRV 155
++ + A A++A + + D+ +V SS + L R +G+ P R
Sbjct: 52 ISQDIVTFAANAAEAILTKEDKEAIDMV-IVGTESSIDESKAAAVVLHRLMGIQP-FARS 109
Query: 156 MLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGD 215
C G +GL++AK+ +P +VL+ ++ G S P G
Sbjct: 110 FEIKEACYGATAGLQLAKNHVALHPDKKVLVVAADIAKYGLN--SGGEPTQ-------GA 160
Query: 216 GAGAMIVGSDP 226
GA AM+V S+P
Sbjct: 161 GAVAMLVSSEP 171
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 204 PYDLVGVALFGDGAGAMIVGSDPVP--------SERPLFELHTAIQNFLPNTEKTIDGRL 255
P D + +FGDGAGA ++ + P ++ EL T N E +I L
Sbjct: 171 PTDRGTIIIFGDGAGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSI--HL 228
Query: 256 TEEGIS-FKLA-RELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAV-HPGGPAILNKL 312
T G FK+A EL I+++ + N D +++ W V H I++
Sbjct: 229 TMAGNEVFKVAVTELAHIVDETLAA-----------NNLDRSQLDWLVPHQANLRIISAT 277
Query: 313 EKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDWGLILAFG 372
K+L + D + + L +GN S+ ++ L+ + + Q L+ AFG
Sbjct: 278 AKKLGMSMDNVVVT---LDRHGNTSAASVPCALDEAVRDGRIKPGQ------LVLLEAFG 328
Query: 373 PGITFEGILAR 383
G T+ L R
Sbjct: 329 GGFTWGSALVR 339
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 204 PYDLVGVALFGDGAGAMIVGSDPVP--------SERPLFELHTAIQNFLPNTEKTIDGRL 255
P D + +FGDGAGA ++ + P ++ EL T N E +I L
Sbjct: 148 PTDRGTIIIFGDGAGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSI--HL 205
Query: 256 TEEGIS-FKLA-RELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAV-HPGGPAILNKL 312
T G FK+A EL I+++ + N D +++ W V H I++
Sbjct: 206 TMAGNEVFKVAVTELAHIVDETLAA-----------NNLDRSQLDWLVPHQANLRIISAT 254
Query: 313 EKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDWGLILAFG 372
K+L + D + + L +GN S+ ++ L+ + + Q L+ AFG
Sbjct: 255 AKKLGMSMDNVVVT---LDRHGNTSAASVPCALDEAVRDGRIKPGQ------LVLLEAFG 305
Query: 373 PGITFEGILAR 383
G T+ L R
Sbjct: 306 GGFTWGSALVR 316
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 33/191 (17%)
Query: 204 PYDLVGVALFGDGAGAMIVGSDPVP--------SERPLFELHTAIQNFLPNTEKTIDGRL 255
P D + +FGDGAGA ++ + P ++ EL T N E +I L
Sbjct: 148 PTDRGTIIIFGDGAGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSI--HL 205
Query: 256 TEEGIS-FKLA-RELPQIIEDNIEGFCGKLMGNIGFTNNDYNKMFWAV-HPGGPAILNKL 312
T G FK+A EL I+++ + N D +++ W V H I++
Sbjct: 206 TXAGNEVFKVAVTELAHIVDETLAA-----------NNLDRSQLDWLVPHQANLRIISAT 254
Query: 313 EKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDWGLILAFG 372
K+L D + + L +GN S+ ++ L+ + + Q L+ AFG
Sbjct: 255 AKKLGXSXDNVVVT---LDRHGNTSAASVPCALDEAVRDGRIKPGQ------LVLLEAFG 305
Query: 373 PGITFEGILAR 383
G T+ L R
Sbjct: 306 GGFTWGSALVR 316
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 129/334 (38%), Gaps = 46/334 (13%)
Query: 68 VVMSDEILKKY--PELAIEGLPTVK-QRLDICNKAVTQMAIEASQACIKSWGRPITDITH 124
VV +DEI + + AI +K +R +++ MA EA + + + G DI
Sbjct: 47 VVTNDEICQHIDSSDEAIYTRTGIKTRRFAADDESAASMATEACRRALSNAGLSAADIDG 106
Query: 125 VVYVSSSE-ARLPGGDLYLARGLGLSPETQRVMLYF---MGCSGGVSGLRVAKDIAENNP 180
V+ +++ + P +A LG + +L F GC+G L A D+
Sbjct: 107 VIVTTNTHFLQTPPAAPMVAASLG-----AKGILGFDLSAGCAGFGYALGAAADMIRGGG 161
Query: 181 GSRVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPSERPLFELHTAI 240
+ +L+ +E P+ + YD +F DGA A++VG P P
Sbjct: 162 AATMLVVGTEKL-----SPTIDM-YDAGNCFIFADGAAAVVVGETPFQGIGPTVAGS--- 212
Query: 241 QNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEG-----FCGKLMGNIGFTNNDYN 295
+ E+ R + I+F P+ +EG + MG++G D
Sbjct: 213 -----DGEQADAIRQDIDWITFAQNPSGPRPFV-RLEGPAVFRWAAFKMGDVGRRAMDAA 266
Query: 296 KM------FWAVHPGGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYML 349
+ + H I L K L L PD + A+ + GN S+ +I + +L
Sbjct: 267 GVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVAND--IEHTGNTSAASIPLAMAELL 324
Query: 350 EESLKMKSQDHEDTDWGLILAFGPGITFEGILAR 383
+ D L++ +G G+++ + R
Sbjct: 325 TTGAA------KPGDLALLIGYGAGLSYAAQVVR 352
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 125/334 (37%), Gaps = 46/334 (13%)
Query: 68 VVMSDEI---LKKYPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPITDITH 124
VV +DEI + E +R +++ MA EA + + + G DI
Sbjct: 47 VVTNDEICQHIDSSDEWIYTATGIKTRRFAADDESAASMATEACRRALSNAGLSAADIDG 106
Query: 125 VVYVSSSE-ARLPGGDLYLARGLGLSPETQRVMLYF---MGCSGGVSGLRVAKDIAENNP 180
V+ +++ + P +A LG + +L F GC+G L A D+
Sbjct: 107 VIVTTNTHFLQTPPAAPMVAASLG-----AKGILGFDLSAGCAGFGYALGAAADMIRGGG 161
Query: 181 GSRVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPSERPLFELHTAI 240
+ +L+ +E P+ + YD +F DGA A++VG P P
Sbjct: 162 AATMLVVGTEKL-----SPTIDM-YDAGNCFIFADGAAAVVVGETPFQGIGPTVAGS--- 212
Query: 241 QNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEG-----FCGKLMGNIGFTNNDYN 295
+ E+ R + I+F P+ +EG + MG++G D
Sbjct: 213 -----DGEQADAIRQDIDWITFAQNPSGPRPFV-RLEGPAVFRWAAFKMGDVGRRAMDAA 266
Query: 296 KM------FWAVHPGGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYML 349
+ + H I L K L L PD + A+ + GN S+ +I + +L
Sbjct: 267 GVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVAND--IEHTGNTSAASIPLAMAELL 324
Query: 350 EESLKMKSQDHEDTDWGLILAFGPGITFEGILAR 383
+ D L++ +G G+++ + R
Sbjct: 325 TTGAA------KPGDLALLIGYGAGLSYAAQVVR 352
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 31.6 bits (70), Expect = 0.89, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 35 LVDGYFKNTNCDDPELKQKLTRLCKTTTVKTRYVVMSDEILKK 77
L Y +TN DDP+ K+K ++L + Y V+SDE+ +K
Sbjct: 31 LAKKYHPDTNKDDPKAKEKFSQLAEA------YEVLSDEVKRK 67
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 126/339 (37%), Gaps = 56/339 (16%)
Query: 68 VVMSDEILKK--------YPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPI 119
VV +DEI + Y I+ +R +++ MA EA + + + G
Sbjct: 26 VVTNDEICQHIDSSDEWIYTRTGIK-----TRRFAADDESAASMATEACRRALSNAGLSA 80
Query: 120 TDITHVVYVSSSE-ARLPGGDLYLARGLGLSPETQRVMLYF---MGCSGGVSGLRVAKDI 175
DI V+ +++ + P +A LG + +L F GC+G L A D+
Sbjct: 81 ADIDGVIVTTNTHFLQTPPAAPMVAASLG-----AKGILGFDLSAGCAGFGYALGAAADM 135
Query: 176 AENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPSERPLFE 235
+ +L+ +E P+ + YD +F DGA A++VG P P
Sbjct: 136 IRGGGAATMLVVGTEKL-----SPTIDM-YDRGNCFIFADGAAAVVVGETPFQGIGPTVA 189
Query: 236 LHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEG-----FCGKLMGNIGFT 290
+ E+ R + I+F P+ +EG + MG++G
Sbjct: 190 GS--------DGEQADAIRQDIDWITFAQNPSGPRPFV-RLEGPAVFRWAAFKMGDVGRR 240
Query: 291 NNDYNKM------FWAVHPGGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYV 344
D + + H I L K L L PD + A+ + GN S+ +I
Sbjct: 241 AMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVAND--IEHTGNTSAASIPLA 298
Query: 345 LEYMLEESLKMKSQDHEDTDWGLILAFGPGITFEGILAR 383
+ +L D L++ +G G+++ + R
Sbjct: 299 MAELLTTGAAKPG------DLALLIGYGAGLSYAAQVVR 331
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 127/339 (37%), Gaps = 56/339 (16%)
Query: 68 VVMSDEILKK--------YPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPI 119
VV +DEI + Y I+ +R +++ MA EA + + + G
Sbjct: 46 VVTNDEICQHIDSSDEWIYTRTGIK-----TRRFAADDESAASMATEACRRALSNAGLSA 100
Query: 120 TDITHVVYVSSSE-ARLPGGDLYLARGLGLSPETQRVMLYF---MGCSGGVSGLRVAKDI 175
DI V+ +++ + P +A LG + +L F GC+G L A D+
Sbjct: 101 ADIDGVIVTTNTHFLQTPPAAPMVAASLG-----AKGILGFDLSAGCAGFGYALGAAADM 155
Query: 176 AENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDPVPSERPLFE 235
+ +L+ +E P+ + YD +F DGA A++VG P P
Sbjct: 156 IRGGGAATMLVVGTEKL-----SPTIDM-YDRGNCFIFADGAAAVVVGETPFQGIGPTVA 209
Query: 236 LHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEG-----FCGKLMGNIGFT 290
+ E+ R + I+F P+ +EG + MG++G
Sbjct: 210 GS--------DGEQADAIRQDIDWITFAQNPSGPRPFV-RLEGPAVFRWAAFKMGDVGRR 260
Query: 291 NNDYNKM------FWAVHPGGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYV 344
D + + H I L K L L PD + A+ + GN S+ +I
Sbjct: 261 AMDAAGVRPDQIDVFVPHQANSRINELLVKNLQLRPDAVVAND--IEHTGNTSAASIPLA 318
Query: 345 LEYMLEESLKMKSQDHEDTDWGLILAFGPGITFEGILAR 383
+ +L + D L++ +G G+++ + R
Sbjct: 319 MAELLTTGAA------KPGDLALLIGYGAGLSYAAQVVR 351
>pdb|2QNY|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QNY|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QO0|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
pdb|2QO0|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
Length = 335
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 68 VVMSDEILKK--------YPELAIEGLPTVKQRLDICNKAVTQMAIEASQACIKSWGRPI 119
VV +DEI + Y I+ +R +++ MA EA + + + G
Sbjct: 26 VVTNDEICQHIDSSDEWIYTRTGIK-----TRRFAADDESAASMATEACRRALSNAGLSA 80
Query: 120 TDITHVVYVSSSE-ARLPGGDLYLARGLGLSPETQRVMLYF---MGCSGGVSGLRVAKDI 175
DI V+ +++ + P +A LG + +L F GC+G L A D+
Sbjct: 81 ADIDGVIVTTNTHFLQTPPAAPMVAASLG-----AKGILGFDLSAGCAGFGYALGAAADM 135
Query: 176 AENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGDGAGAMIVGSDP 226
+ +L+ +E P+ + YD +F DGA A++VG P
Sbjct: 136 IRGGGAATMLVVGTEKL-----SPTIDM-YDRGNCFIFADGAAAVVVGETP 180
>pdb|2ILR|A Chain A, Crystal Structure Of Human Fanconi Anemia Protein E C-
Terminal Domain
Length = 264
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 312 LEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHEDTDWGLILAF 371
LE+++ + P+K + L G A++ ++ Y + ML K ++ E GL +A
Sbjct: 186 LERQVEMTPEKFSVLMEKLCKKGLAATTSMAYA-KLMLTVMTKYQANITETQRLGLAMAL 244
Query: 372 GPGITF 377
P TF
Sbjct: 245 EPNTTF 250
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 158 YFMGCSGGVSGLRVAK--DIAENNPGSRVLLATSETTIIGFKPPSAERPYDLVGVALFGD 215
Y +GC GG S +R A D + + LA I +P P +V A GD
Sbjct: 157 YVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEITPRPIGETVPLGMVMSAPLGD 216
Query: 216 GAGAMIVGSDPVPSER-----PLFELHTAIQNF 243
G +IV P+ R P E+ A Q
Sbjct: 217 GVDRIIVCERGAPARRRTGPPPYQEVAAAWQRL 249
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 146 LGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPY 205
LG+ P + + C +++AKD P +VL+ ++T G
Sbjct: 95 LGIQPFARCFEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSG------ 148
Query: 206 DLVGVALFGDGAGAMIVGSDP 226
G G GA AM++ +P
Sbjct: 149 ---GEPTQGAGAVAMVIAHNP 166
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 146 LGLSPETQRVMLYFMGCSGGVSGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSAERPY 205
LG+ P + + C +++AKD P +VL+ ++T G
Sbjct: 95 LGIQPFARCFEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSG------ 148
Query: 206 DLVGVALFGDGAGAMIVGSDP 226
G G GA AM++ +P
Sbjct: 149 ---GEPTQGAGAVAMVIAHNP 166
>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
Length = 350
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 48/201 (23%)
Query: 212 LFGDGAGAMIVGSDPVPSERPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQI 271
L GDGAGA+IV + P P + + E+ +T + + A E +
Sbjct: 167 LLGDGAGAVIVAASDEPGISPSV--------WGSDGERWSTISMTHSQLELRDAVEHART 218
Query: 272 IED--NIEGFCGKLMGNIGFTNNDYNKMF-WAV--------------------------H 302
D I G G L + D +F WAV H
Sbjct: 219 TGDASAITGAEGMLWPTL---RQDGPSVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPH 275
Query: 303 PGGPAILNKLEKRLNLLPDKLNASRRALMDYGNASSNTIVYVLEYMLEESLKMKSQDHED 362
I+++ K+L LP+ + +R + D GN S+ +I + +LEE+ ++
Sbjct: 276 QANMRIIDEFAKQLK-LPESVVVARD-IADAGNTSAASIPLAMHRLLEENPELSG----- 328
Query: 363 TDWGLILAFGPGITFEGILAR 383
L + FG G+ + + R
Sbjct: 329 -GLALQIGFGAGLVYGAQVVR 348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,786,568
Number of Sequences: 62578
Number of extensions: 499588
Number of successful extensions: 1412
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1229
Number of HSP's gapped (non-prelim): 75
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)