Query 016570
Match_columns 387
No_of_seqs 131 out of 617
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kb2_A SPBC2 prophage-derived 97.7 0.00031 1E-08 58.6 10.4 119 249-376 4-169 (173)
2 3trf_A Shikimate kinase, SK; a 97.1 0.00031 1E-08 60.0 3.8 119 249-375 8-176 (185)
3 3t61_A Gluconokinase; PSI-biol 97.0 0.00076 2.6E-08 58.8 5.9 115 249-375 21-181 (202)
4 3ake_A Cytidylate kinase; CMP 97.0 0.0029 1E-07 54.5 9.1 68 293-372 136-207 (208)
5 3lw7_A Adenylate kinase relate 96.9 0.0015 5.2E-08 53.7 6.1 114 249-373 4-176 (179)
6 2h92_A Cytidylate kinase; ross 96.9 0.0073 2.5E-07 52.9 10.8 74 294-375 137-219 (219)
7 4e22_A Cytidylate kinase; P-lo 96.9 0.0059 2E-07 56.0 10.5 75 294-375 164-246 (252)
8 1via_A Shikimate kinase; struc 96.7 0.0026 9E-08 54.1 6.7 119 249-374 7-167 (175)
9 3vaa_A Shikimate kinase, SK; s 96.7 0.004 1.4E-07 54.4 7.9 121 249-374 28-196 (199)
10 1tev_A UMP-CMP kinase; ploop, 96.6 0.0068 2.3E-07 51.2 8.5 73 294-373 115-194 (196)
11 2z0h_A DTMP kinase, thymidylat 96.6 0.0061 2.1E-07 52.0 7.7 70 292-374 121-192 (197)
12 3iij_A Coilin-interacting nucl 96.4 0.0018 6.2E-08 55.2 3.5 117 248-374 13-174 (180)
13 1q3t_A Cytidylate kinase; nucl 96.3 0.032 1.1E-06 50.0 11.1 71 294-373 154-234 (236)
14 4eun_A Thermoresistant glucoki 96.3 0.0061 2.1E-07 53.3 6.1 68 295-374 127-194 (200)
15 2jaq_A Deoxyguanosine kinase; 96.2 0.011 3.9E-07 50.3 7.5 77 292-374 124-201 (205)
16 3nwj_A ATSK2; P loop, shikimat 96.2 0.0038 1.3E-07 58.4 4.7 127 248-375 50-238 (250)
17 2c95_A Adenylate kinase 1; tra 96.1 0.03 1E-06 47.6 9.6 117 249-374 12-194 (196)
18 1cke_A CK, MSSA, protein (cyti 96.1 0.028 9.7E-07 49.2 9.5 74 293-374 141-223 (227)
19 1kag_A SKI, shikimate kinase I 96.1 0.0064 2.2E-07 51.0 5.0 43 330-373 130-172 (173)
20 2cdn_A Adenylate kinase; phosp 96.0 0.062 2.1E-06 46.5 11.2 125 235-372 9-200 (201)
21 1qf9_A UMP/CMP kinase, protein 95.9 0.03 1E-06 47.1 8.7 118 249-373 9-191 (194)
22 1knq_A Gluconate kinase; ALFA/ 95.9 0.017 5.7E-07 48.8 7.0 67 295-373 106-173 (175)
23 1kht_A Adenylate kinase; phosp 95.9 0.0086 3E-07 50.6 5.0 27 249-275 6-38 (192)
24 1ak2_A Adenylate kinase isoenz 95.8 0.039 1.3E-06 49.4 9.2 29 248-276 18-47 (233)
25 1zuh_A Shikimate kinase; alpha 95.5 0.026 9E-07 47.4 6.7 116 248-371 9-167 (168)
26 2bwj_A Adenylate kinase 5; pho 95.4 0.044 1.5E-06 46.7 7.8 27 249-275 15-42 (199)
27 2vli_A Antibiotic resistance p 95.4 0.13 4.3E-06 43.3 10.5 26 249-274 8-34 (183)
28 2iyv_A Shikimate kinase, SK; t 95.3 0.015 5.2E-07 49.5 4.6 117 249-374 5-169 (184)
29 1y63_A LMAJ004144AAA protein; 95.3 0.037 1.3E-06 47.8 7.1 27 249-275 13-41 (184)
30 1ukz_A Uridylate kinase; trans 95.3 0.21 7.2E-06 43.0 11.7 74 293-373 121-201 (203)
31 3cm0_A Adenylate kinase; ATP-b 95.2 0.1 3.5E-06 44.1 9.3 117 249-372 7-185 (186)
32 1vht_A Dephospho-COA kinase; s 95.2 0.047 1.6E-06 47.9 7.4 27 249-275 7-33 (218)
33 3uie_A Adenylyl-sulfate kinase 95.1 0.024 8.3E-07 49.4 5.3 26 349-374 169-195 (200)
34 2v54_A DTMP kinase, thymidylat 95.0 0.07 2.4E-06 45.7 7.8 26 249-274 7-34 (204)
35 1e6c_A Shikimate kinase; phosp 95.0 0.085 2.9E-06 44.0 8.1 115 249-373 5-170 (173)
36 3fb4_A Adenylate kinase; psych 94.9 0.12 4.1E-06 45.0 9.2 28 249-276 3-31 (216)
37 1nn5_A Similar to deoxythymidy 94.9 0.08 2.7E-06 45.6 7.8 70 293-374 130-201 (215)
38 1jjv_A Dephospho-COA kinase; P 94.9 0.13 4.4E-06 44.5 9.2 26 249-274 5-30 (206)
39 3be4_A Adenylate kinase; malar 94.8 0.12 4E-06 45.7 9.0 28 249-276 8-36 (217)
40 1nks_A Adenylate kinase; therm 94.8 0.18 6.1E-06 42.3 9.6 20 249-268 4-23 (194)
41 2pbr_A DTMP kinase, thymidylat 94.8 0.23 7.9E-06 41.8 10.3 68 292-373 122-191 (195)
42 2if2_A Dephospho-COA kinase; a 94.7 0.082 2.8E-06 45.6 7.5 27 249-275 4-30 (204)
43 3dl0_A Adenylate kinase; phosp 94.5 0.1 3.6E-06 45.5 7.8 28 249-276 3-31 (216)
44 3tlx_A Adenylate kinase 2; str 94.5 0.15 5.2E-06 46.3 9.0 26 249-274 32-58 (243)
45 1zak_A Adenylate kinase; ATP:A 94.4 0.081 2.8E-06 46.6 7.0 27 249-275 8-35 (222)
46 3r20_A Cytidylate kinase; stru 94.4 0.25 8.6E-06 45.8 10.5 72 297-375 150-229 (233)
47 2qt1_A Nicotinamide riboside k 94.0 0.55 1.9E-05 40.7 11.2 25 249-273 24-50 (207)
48 3tr0_A Guanylate kinase, GMP k 93.8 0.5 1.7E-05 40.3 10.6 21 249-269 10-30 (205)
49 2f6r_A COA synthase, bifunctio 93.7 0.39 1.3E-05 44.8 10.4 27 249-275 78-104 (281)
50 4eaq_A DTMP kinase, thymidylat 93.3 0.28 9.6E-06 44.5 8.4 76 292-375 148-226 (229)
51 1e4v_A Adenylate kinase; trans 92.6 0.37 1.3E-05 42.2 8.0 28 249-276 3-31 (214)
52 3a4m_A L-seryl-tRNA(SEC) kinas 92.1 0.43 1.5E-05 43.6 8.1 26 249-274 7-36 (260)
53 4ehx_A Tetraacyldisaccharide 4 92.1 0.056 1.9E-06 52.4 2.2 27 247-273 36-67 (315)
54 3hjn_A DTMP kinase, thymidylat 92.0 0.53 1.8E-05 41.8 8.3 69 293-374 122-192 (197)
55 3ney_A 55 kDa erythrocyte memb 90.9 0.59 2E-05 42.4 7.5 80 292-374 108-190 (197)
56 3a00_A Guanylate kinase, GMP k 89.6 0.19 6.5E-06 43.3 2.9 19 249-267 4-22 (186)
57 3zvl_A Bifunctional polynucleo 88.7 1 3.4E-05 44.5 7.8 124 147-274 92-287 (416)
58 3sr0_A Adenylate kinase; phosp 87.8 1.7 5.8E-05 39.1 8.1 120 249-373 3-204 (206)
59 1ex7_A Guanylate kinase; subst 87.4 5.3 0.00018 35.6 11.0 112 249-372 4-183 (186)
60 2qmh_A HPR kinase/phosphorylas 86.8 0.36 1.2E-05 44.8 3.1 27 249-275 37-63 (205)
61 3fdi_A Uncharacterized protein 86.7 1.2 4E-05 39.6 6.3 72 295-375 119-200 (201)
62 1uj2_A Uridine-cytidine kinase 86.5 1.7 5.9E-05 39.1 7.4 24 249-272 25-49 (252)
63 3lv8_A DTMP kinase, thymidylat 85.8 2.8 9.4E-05 38.7 8.5 75 292-375 154-230 (236)
64 4tmk_A Protein (thymidylate ki 85.6 4.4 0.00015 36.6 9.6 73 292-376 132-209 (213)
65 3tmk_A Thymidylate kinase; pho 85.4 0.6 2.1E-05 42.6 3.8 73 292-375 125-204 (216)
66 1uf9_A TT1252 protein; P-loop, 85.3 0.37 1.3E-05 41.0 2.2 26 249-274 11-36 (203)
67 3eph_A TRNA isopentenyltransfe 83.9 1.4 4.8E-05 44.6 6.0 27 249-275 5-32 (409)
68 1x6v_B Bifunctional 3'-phospho 83.4 0.34 1.2E-05 51.4 1.4 25 351-375 200-224 (630)
69 2rhm_A Putative kinase; P-loop 81.9 0.55 1.9E-05 39.6 1.9 27 249-275 8-35 (193)
70 2ze6_A Isopentenyl transferase 81.9 0.54 1.8E-05 43.1 1.9 28 249-276 4-32 (253)
71 1xjc_A MOBB protein homolog; s 81.6 0.63 2.1E-05 41.3 2.2 32 249-280 7-42 (169)
72 2pt5_A Shikimate kinase, SK; a 81.1 0.64 2.2E-05 38.5 1.9 116 249-374 3-164 (168)
73 3hdt_A Putative kinase; struct 81.0 4.8 0.00017 36.6 8.0 71 294-374 138-219 (223)
74 1qhx_A CPT, protein (chloramph 81.0 0.71 2.4E-05 38.6 2.2 24 249-272 6-30 (178)
75 1ly1_A Polynucleotide kinase; 80.6 0.68 2.3E-05 38.4 2.0 27 249-275 5-33 (181)
76 3a8t_A Adenylate isopentenyltr 79.7 0.73 2.5E-05 45.4 2.1 27 249-275 43-70 (339)
77 4edh_A DTMP kinase, thymidylat 79.4 4.8 0.00016 36.2 7.3 74 292-374 131-207 (213)
78 4hlc_A DTMP kinase, thymidylat 79.4 5.8 0.0002 35.4 7.8 74 293-374 125-201 (205)
79 1k7c_A Rhamnogalacturonan acet 79.2 3.9 0.00013 36.4 6.6 55 144-198 111-179 (233)
80 3hp4_A GDSL-esterase; psychrot 78.9 3 0.0001 34.5 5.4 47 144-190 89-145 (185)
81 2pez_A Bifunctional 3'-phospho 78.0 0.89 3E-05 38.4 1.9 26 249-274 8-37 (179)
82 3p94_A GDSL-like lipase; serin 77.5 4.7 0.00016 33.7 6.3 48 145-192 101-165 (204)
83 1zd8_A GTP:AMP phosphotransfer 77.4 1 3.5E-05 39.7 2.2 27 249-275 10-37 (227)
84 3mil_A Isoamyl acetate-hydroly 76.9 6.5 0.00022 33.6 7.1 52 145-196 100-177 (240)
85 3crm_A TRNA delta(2)-isopenten 76.6 1 3.5E-05 43.9 2.2 28 249-276 8-36 (323)
86 1ivn_A Thioesterase I; hydrola 76.0 8.1 0.00028 32.3 7.4 47 145-191 86-142 (190)
87 1aky_A Adenylate kinase; ATP:A 75.9 1.1 3.8E-05 39.2 2.0 28 249-276 7-35 (220)
88 3exa_A TRNA delta(2)-isopenten 75.4 1.2 4E-05 43.8 2.2 23 249-271 6-29 (322)
89 1d2n_A N-ethylmaleimide-sensit 74.2 0.83 2.8E-05 41.4 0.7 25 248-272 66-91 (272)
90 3rjt_A Lipolytic protein G-D-S 74.0 8 0.00027 32.2 6.8 53 144-196 116-182 (216)
91 2v3c_C SRP54, signal recogniti 74.0 1.4 4.7E-05 44.3 2.3 27 248-274 101-131 (432)
92 2xb4_A Adenylate kinase; ATP-b 73.9 1.4 4.7E-05 39.2 2.1 28 249-276 3-31 (223)
93 1jbk_A CLPB protein; beta barr 73.4 1.4 4.9E-05 35.8 1.9 22 248-269 45-66 (195)
94 3eie_A Vacuolar protein sortin 72.6 2.3 8E-05 39.8 3.4 48 226-273 31-79 (322)
95 2grj_A Dephospho-COA kinase; T 72.4 1.5 5.2E-05 38.9 2.0 27 249-275 15-42 (192)
96 3tau_A Guanylate kinase, GMP k 72.2 1.3 4.5E-05 38.9 1.5 80 292-375 97-190 (208)
97 2j41_A Guanylate kinase; GMP, 71.9 1.4 4.9E-05 37.4 1.6 22 249-270 9-30 (207)
98 2wwf_A Thymidilate kinase, put 71.6 1.4 4.8E-05 37.7 1.6 69 293-374 131-200 (212)
99 3foz_A TRNA delta(2)-isopenten 71.6 1.6 5.6E-05 42.7 2.2 27 249-275 13-40 (316)
100 2qor_A Guanylate kinase; phosp 71.4 1.3 4.4E-05 38.5 1.2 20 249-268 15-34 (204)
101 4a1f_A DNAB helicase, replicat 70.4 19 0.00067 34.9 9.5 144 186-373 5-153 (338)
102 3h8v_A Ubiquitin-like modifier 70.1 19 0.00067 34.4 9.3 78 103-188 82-168 (292)
103 3bgw_A DNAB-like replicative h 70.1 66 0.0022 32.0 13.5 26 243-268 193-219 (444)
104 3dc7_A Putative uncharacterize 69.7 9 0.00031 33.0 6.3 47 145-191 114-183 (232)
105 2p65_A Hypothetical protein PF 69.0 1.7 5.7E-05 35.6 1.3 22 248-269 45-66 (187)
106 1zud_1 Adenylyltransferase THI 68.7 17 0.00057 33.4 8.2 72 105-188 77-149 (251)
107 2yvu_A Probable adenylyl-sulfa 67.9 1.9 6.6E-05 36.5 1.6 25 349-373 159-183 (186)
108 3d3q_A TRNA delta(2)-isopenten 67.7 2.2 7.4E-05 42.0 2.1 23 249-271 10-33 (340)
109 3tqf_A HPR(Ser) kinase; transf 67.6 2.4 8.3E-05 38.6 2.2 26 249-274 19-44 (181)
110 1np6_A Molybdopterin-guanine d 67.4 2.5 8.5E-05 37.1 2.2 30 249-278 9-42 (174)
111 3n70_A Transport activator; si 67.3 1.9 6.4E-05 35.6 1.4 32 247-279 25-56 (145)
112 4h08_A Putative hydrolase; GDS 66.9 9.1 0.00031 32.3 5.7 49 145-193 96-164 (200)
113 1gtv_A TMK, thymidylate kinase 66.7 0.97 3.3E-05 38.8 -0.6 26 249-274 3-32 (214)
114 1kgd_A CASK, peripheral plasma 66.5 2 6.7E-05 36.8 1.4 78 292-373 94-178 (180)
115 2wjg_A FEOB, ferrous iron tran 66.5 2.8 9.4E-05 34.7 2.2 130 245-375 6-171 (188)
116 3v7e_A Ribosome-associated pro 66.4 17 0.00057 28.3 6.6 54 149-204 18-73 (82)
117 2qp9_X Vacuolar protein sortin 66.4 3.8 0.00013 39.3 3.5 48 226-273 64-112 (355)
118 1ltq_A Polynucleotide kinase; 66.3 2.4 8.1E-05 38.7 2.0 26 249-274 5-32 (301)
119 1gvn_B Zeta; postsegregational 66.2 3.2 0.00011 38.8 2.9 20 249-268 36-55 (287)
120 4hf7_A Putative acylhydrolase; 66.0 13 0.00044 32.0 6.5 49 145-193 105-171 (209)
121 2q6t_A DNAB replication FORK h 65.8 14 0.00047 36.4 7.5 106 243-373 196-308 (444)
122 2px0_A Flagellar biosynthesis 65.6 2.5 8.6E-05 40.0 2.0 30 248-277 107-141 (296)
123 2qz4_A Paraplegin; AAA+, SPG7, 65.5 2.5 8.6E-05 37.2 1.9 25 249-273 42-67 (262)
124 2plr_A DTMP kinase, probable t 65.3 2.2 7.4E-05 36.2 1.4 25 349-374 184-208 (213)
125 3h4m_A Proteasome-activating n 64.5 3 0.0001 37.5 2.3 26 249-274 54-80 (285)
126 3v9p_A DTMP kinase, thymidylat 64.5 5.5 0.00019 36.5 4.0 72 292-372 151-225 (227)
127 2plr_A DTMP kinase, probable t 63.8 19 0.00064 30.3 7.0 16 293-308 122-137 (213)
128 1p5z_B DCK, deoxycytidine kina 63.4 34 0.0012 30.7 9.1 73 292-374 174-259 (263)
129 3lnc_A Guanylate kinase, GMP k 63.3 3 0.0001 36.8 2.0 19 249-267 30-48 (231)
130 3hws_A ATP-dependent CLP prote 63.2 2.2 7.4E-05 40.5 1.1 25 245-269 50-74 (363)
131 1zp6_A Hypothetical protein AT 63.2 2.6 9E-05 35.4 1.5 25 350-374 152-176 (191)
132 1lnz_A SPO0B-associated GTP-bi 62.9 2.6 8.9E-05 40.9 1.6 35 246-280 158-192 (342)
133 3ec2_A DNA replication protein 62.7 2.3 7.9E-05 35.8 1.1 28 248-275 40-72 (180)
134 2cvh_A DNA repair and recombin 62.5 3.1 0.00011 35.5 1.9 34 243-276 16-51 (220)
135 2bdt_A BH3686; alpha-beta prot 62.2 17 0.00058 30.5 6.5 61 296-368 105-168 (189)
136 1m7g_A Adenylylsulfate kinase; 61.9 13 0.00045 32.2 5.8 25 350-374 179-203 (211)
137 1jw9_B Molybdopterin biosynthe 61.5 23 0.00079 32.3 7.7 71 106-188 81-152 (249)
138 3dm5_A SRP54, signal recogniti 61.1 3.3 0.00011 42.1 2.1 29 247-275 101-133 (443)
139 2wji_A Ferrous iron transport 60.6 3.3 0.00011 34.1 1.6 31 247-277 4-34 (165)
140 4bas_A ADP-ribosylation factor 60.5 69 0.0024 26.2 10.7 134 241-376 12-192 (199)
141 3t15_A Ribulose bisphosphate c 60.5 3.3 0.00011 38.6 1.8 28 249-276 39-67 (293)
142 3bh0_A DNAB-like replicative h 60.4 48 0.0016 31.1 9.8 105 243-373 64-177 (315)
143 1vjg_A Putative lipase from th 60.3 12 0.00039 32.0 5.1 48 145-192 117-177 (218)
144 3b9p_A CG5977-PA, isoform A; A 59.5 4.3 0.00015 36.8 2.3 26 248-273 56-82 (297)
145 2bdt_A BH3686; alpha-beta prot 59.5 3.2 0.00011 35.2 1.4 20 249-268 5-24 (189)
146 2c9o_A RUVB-like 1; hexameric 59.4 2.8 9.7E-05 41.5 1.2 23 249-271 66-89 (456)
147 1xwi_A SKD1 protein; VPS4B, AA 59.4 7 0.00024 36.9 3.9 43 226-268 25-67 (322)
148 3d8b_A Fidgetin-like protein 1 59.2 6.9 0.00024 37.3 3.8 48 227-274 98-146 (357)
149 1ofh_A ATP-dependent HSL prote 59.0 3.8 0.00013 36.8 1.9 24 248-271 52-76 (310)
150 2bbw_A Adenylate kinase 4, AK4 58.4 3.3 0.00011 36.9 1.4 44 213-272 10-54 (246)
151 1v5w_A DMC1, meiotic recombina 58.0 4.4 0.00015 38.8 2.2 26 243-268 118-144 (343)
152 3cf0_A Transitional endoplasmi 57.7 4.6 0.00016 37.4 2.3 21 248-268 51-71 (301)
153 3vfd_A Spastin; ATPase, microt 57.4 7.8 0.00027 37.2 3.9 28 247-274 149-177 (389)
154 2drn_C 24-residues peptide fro 57.3 5.2 0.00018 25.8 1.7 14 359-372 2-15 (26)
155 2xxa_A Signal recognition part 57.3 4.2 0.00014 40.8 2.0 26 249-274 103-133 (433)
156 2w58_A DNAI, primosome compone 57.2 3.7 0.00013 35.1 1.4 22 247-268 55-76 (202)
157 1c9k_A COBU, adenosylcobinamid 57.1 4.4 0.00015 36.3 1.9 25 249-273 2-26 (180)
158 3a1s_A Iron(II) transport prot 57.1 4.8 0.00016 36.9 2.2 125 247-373 6-167 (258)
159 2vp4_A Deoxynucleoside kinase; 57.0 3.8 0.00013 36.4 1.5 74 292-374 146-225 (230)
160 3v7q_A Probable ribosomal prot 56.9 30 0.001 27.7 6.7 43 160-204 39-81 (101)
161 3syl_A Protein CBBX; photosynt 56.9 3.6 0.00012 37.4 1.4 21 248-268 69-89 (309)
162 2bjv_A PSP operon transcriptio 56.8 3.5 0.00012 37.0 1.2 24 247-270 30-53 (265)
163 3on1_A BH2414 protein; structu 56.6 29 0.001 27.7 6.6 43 160-204 38-80 (101)
164 3kl4_A SRP54, signal recogniti 56.4 3.9 0.00013 41.3 1.6 27 248-274 99-129 (433)
165 1lv7_A FTSH; alpha/beta domain 56.2 4.7 0.00016 35.9 2.0 20 249-268 48-67 (257)
166 3l07_A Bifunctional protein fo 56.1 40 0.0014 32.5 8.5 147 95-273 34-188 (285)
167 4b4t_J 26S protease regulatory 55.5 5.8 0.0002 40.0 2.7 55 218-276 153-213 (405)
168 1yzf_A Lipase/acylhydrolase; s 55.2 16 0.00055 29.8 5.0 49 145-194 93-155 (195)
169 2vhj_A Ntpase P4, P4; non- hyd 55.1 3 0.0001 41.1 0.6 30 249-278 126-156 (331)
170 3co5_A Putative two-component 55.0 3.7 0.00012 33.9 1.0 24 247-270 28-51 (143)
171 1m7g_A Adenylylsulfate kinase; 54.8 3.9 0.00013 35.6 1.2 20 249-268 28-47 (211)
172 2p5t_B PEZT; postsegregational 54.4 5.3 0.00018 36.1 2.0 23 248-270 34-57 (253)
173 3umf_A Adenylate kinase; rossm 54.0 4.7 0.00016 36.8 1.6 127 242-375 24-215 (217)
174 1lvg_A Guanylate kinase, GMP k 54.0 4.4 0.00015 35.3 1.4 19 249-267 7-25 (198)
175 2kjq_A DNAA-related protein; s 53.8 8.4 0.00029 32.4 3.1 30 248-277 38-71 (149)
176 1rz3_A Hypothetical protein rb 53.7 5.6 0.00019 34.5 2.0 26 249-274 25-54 (201)
177 3pfi_A Holliday junction ATP-d 53.5 5.8 0.0002 36.7 2.2 33 248-280 57-92 (338)
178 2wsm_A Hydrogenase expression/ 53.3 5.6 0.00019 34.1 1.9 29 248-276 32-63 (221)
179 3bos_A Putative DNA replicatio 53.1 4.7 0.00016 34.4 1.4 30 248-277 54-87 (242)
180 1um8_A ATP-dependent CLP prote 52.9 5.9 0.0002 37.6 2.2 26 247-272 73-99 (376)
181 1j8m_F SRP54, signal recogniti 52.7 8.5 0.00029 36.4 3.2 26 249-274 101-130 (297)
182 1ojl_A Transcriptional regulat 52.2 5.3 0.00018 37.5 1.7 33 247-280 26-58 (304)
183 3b1v_A Ferrous iron uptake tra 52.1 5.4 0.00018 37.1 1.7 30 248-277 5-34 (272)
184 1vma_A Cell division protein F 52.0 5.9 0.0002 37.8 2.0 26 249-274 107-136 (306)
185 3k53_A Ferrous iron transport 51.9 6.9 0.00024 35.5 2.4 32 248-279 5-36 (271)
186 1knx_A Probable HPR(Ser) kinas 51.8 6.5 0.00022 38.2 2.3 98 144-274 69-175 (312)
187 1n0w_A DNA repair protein RAD5 51.7 5 0.00017 34.8 1.4 26 243-268 20-46 (243)
188 2chg_A Replication factor C sm 51.7 5.1 0.00018 33.3 1.4 20 249-268 41-60 (226)
189 1hqc_A RUVB; extended AAA-ATPa 51.6 6.1 0.00021 36.0 2.0 25 248-272 40-65 (324)
190 3uk6_A RUVB-like 2; hexameric 51.3 5 0.00017 37.4 1.3 22 248-269 72-93 (368)
191 3pxg_A Negative regulator of g 51.2 7.1 0.00024 38.9 2.6 23 247-269 202-224 (468)
192 2qby_B CDC6 homolog 3, cell di 51.2 6.2 0.00021 36.7 2.0 22 248-269 47-68 (384)
193 2z43_A DNA repair and recombin 50.9 6 0.0002 37.3 1.8 26 243-268 103-129 (324)
194 1g8p_A Magnesium-chelatase 38 50.9 6.1 0.00021 36.3 1.9 21 249-269 48-68 (350)
195 1nij_A Hypothetical protein YJ 50.8 8 0.00027 36.5 2.7 27 249-275 7-35 (318)
196 3p32_A Probable GTPase RV1496/ 50.7 6 0.0002 37.9 1.8 36 248-283 81-120 (355)
197 4a74_A DNA repair and recombin 50.6 5.3 0.00018 34.2 1.3 26 243-268 21-47 (231)
198 3asz_A Uridine kinase; cytidin 50.5 5.3 0.00018 34.3 1.3 22 249-270 9-31 (211)
199 2wwf_A Thymidilate kinase, put 50.5 16 0.00055 31.0 4.4 25 96-122 9-34 (212)
200 2w0m_A SSO2452; RECA, SSPF, un 50.5 5.4 0.00018 34.0 1.4 25 243-267 19-44 (235)
201 4gp7_A Metallophosphoesterase; 50.4 4.2 0.00014 34.5 0.6 17 249-265 12-28 (171)
202 2qgz_A Helicase loader, putati 50.1 10 0.00035 35.7 3.4 40 228-273 140-184 (308)
203 3bzw_A Putative lipase; protei 49.9 22 0.00074 31.9 5.4 49 144-192 144-220 (274)
204 2q0q_A ARYL esterase; SGNH hyd 49.8 27 0.00091 29.3 5.6 24 169-192 163-186 (216)
205 3c8u_A Fructokinase; YP_612366 49.7 7.3 0.00025 33.8 2.1 30 249-278 25-58 (208)
206 4fcw_A Chaperone protein CLPB; 49.7 5.6 0.00019 36.0 1.4 22 248-269 49-70 (311)
207 2cxx_A Probable GTP-binding pr 49.2 6.3 0.00022 32.4 1.5 30 248-277 3-32 (190)
208 2ehv_A Hypothetical protein PH 49.2 4.2 0.00014 35.3 0.5 26 243-268 26-52 (251)
209 3t5d_A Septin-7; GTP-binding p 49.1 24 0.00081 32.0 5.5 31 247-277 9-39 (274)
210 4b4t_K 26S protease regulatory 49.1 6.9 0.00024 39.5 2.0 48 225-276 184-237 (428)
211 3iby_A Ferrous iron transport 48.6 7.9 0.00027 35.4 2.2 31 249-279 4-34 (256)
212 1jal_A YCHF protein; nucleotid 48.1 6.9 0.00023 38.6 1.8 32 248-279 4-35 (363)
213 2r62_A Cell division protease 48.1 3.3 0.00011 37.0 -0.4 20 249-268 47-66 (268)
214 2qby_A CDC6 homolog 1, cell di 48.1 7.5 0.00026 35.7 2.0 30 248-277 47-83 (386)
215 1sxj_A Activator 1 95 kDa subu 47.8 7.9 0.00027 39.0 2.3 29 248-276 79-108 (516)
216 1zu4_A FTSY; GTPase, signal re 47.7 7.5 0.00026 37.2 2.0 26 249-274 108-137 (320)
217 2r44_A Uncharacterized protein 47.6 6.1 0.00021 36.5 1.3 31 248-278 48-79 (331)
218 1ls1_A Signal recognition part 47.5 7.9 0.00027 36.4 2.1 26 249-274 101-130 (295)
219 3dz8_A RAS-related protein RAB 47.4 20 0.0007 29.8 4.5 35 339-374 150-187 (191)
220 1ky3_A GTP-binding protein YPT 47.4 10 0.00035 30.6 2.5 23 247-269 9-31 (182)
221 2qu8_A Putative nucleolar GTP- 47.4 7.9 0.00027 33.7 1.9 32 247-278 30-61 (228)
222 1njg_A DNA polymerase III subu 47.0 6.8 0.00023 32.7 1.4 20 249-268 48-67 (250)
223 1s96_A Guanylate kinase, GMP k 46.7 6.7 0.00023 35.3 1.4 78 294-374 108-198 (219)
224 2o14_A Hypothetical protein YX 46.6 26 0.00091 33.8 5.7 52 145-196 256-323 (375)
225 3i8s_A Ferrous iron transport 46.0 9 0.00031 35.2 2.2 32 248-279 5-36 (274)
226 1ixz_A ATP-dependent metallopr 45.9 7 0.00024 34.7 1.4 20 249-268 52-71 (254)
227 2lkc_A Translation initiation 45.8 8.4 0.00029 31.2 1.8 126 247-375 9-173 (178)
228 2r2a_A Uncharacterized protein 45.7 10 0.00036 33.8 2.5 32 249-280 8-52 (199)
229 1z6g_A Guanylate kinase; struc 45.6 7 0.00024 34.6 1.4 46 328-374 161-208 (218)
230 1ko7_A HPR kinase/phosphatase; 45.4 9.2 0.00032 37.1 2.2 26 249-274 147-172 (314)
231 1sxj_D Activator 1 41 kDa subu 45.3 7.1 0.00024 35.8 1.4 21 249-269 61-81 (353)
232 2yhs_A FTSY, cell division pro 45.2 35 0.0012 35.3 6.6 93 164-268 221-315 (503)
233 1qhx_A CPT, protein (chloramph 45.1 17 0.00059 30.0 3.6 22 350-371 155-176 (178)
234 2i1q_A DNA repair and recombin 45.1 8.4 0.00029 35.9 1.9 26 243-268 94-120 (322)
235 2dr3_A UPF0273 protein PH0284; 45.0 7.3 0.00025 33.7 1.3 32 243-274 19-55 (247)
236 1q57_A DNA primase/helicase; d 44.8 36 0.0012 33.8 6.5 26 243-268 238-264 (503)
237 4b4t_L 26S protease subunit RP 44.7 8.6 0.0003 38.9 2.0 56 218-277 186-247 (437)
238 2hf9_A Probable hydrogenase ni 44.6 5 0.00017 34.6 0.2 21 248-268 40-60 (226)
239 4edh_A DTMP kinase, thymidylat 44.6 9 0.00031 34.4 1.9 26 249-274 9-38 (213)
240 1znw_A Guanylate kinase, GMP k 44.5 7.6 0.00026 33.7 1.4 25 243-267 16-41 (207)
241 2zan_A Vacuolar protein sortin 44.4 15 0.00053 36.2 3.7 43 226-268 147-189 (444)
242 3v9p_A DTMP kinase, thymidylat 44.2 10 0.00035 34.7 2.3 36 226-268 12-47 (227)
243 2r6a_A DNAB helicase, replicat 44.2 24 0.00082 34.8 5.1 27 243-269 199-226 (454)
244 2ffh_A Protein (FFH); SRP54, s 44.0 9.3 0.00032 38.4 2.1 26 249-274 101-130 (425)
245 2j37_W Signal recognition part 43.9 8.3 0.00028 39.6 1.8 29 248-276 103-135 (504)
246 2ocp_A DGK, deoxyguanosine kin 43.9 9.7 0.00033 33.7 2.0 25 249-273 5-31 (241)
247 2hsj_A Putative platelet activ 43.7 18 0.00062 30.4 3.6 49 145-193 109-180 (214)
248 1l8q_A Chromosomal replication 43.5 9.1 0.00031 35.3 1.8 29 248-276 39-71 (324)
249 3tw8_B RAS-related protein RAB 43.3 8.8 0.0003 31.0 1.5 36 339-375 135-173 (181)
250 2dyk_A GTP-binding protein; GT 43.0 9.6 0.00033 30.2 1.7 29 249-277 4-33 (161)
251 1g16_A RAS-related protein SEC 43.0 9.6 0.00033 30.4 1.7 35 339-374 129-166 (170)
252 2zts_A Putative uncharacterize 42.8 4.5 0.00015 35.0 -0.3 25 243-267 26-51 (251)
253 1yrb_A ATP(GTP)binding protein 42.6 9.6 0.00033 33.6 1.8 32 245-276 13-47 (262)
254 1a7j_A Phosphoribulokinase; tr 42.4 11 0.00037 35.4 2.1 22 249-270 8-30 (290)
255 2vp4_A Deoxynucleoside kinase; 42.2 23 0.00077 31.3 4.1 24 96-121 19-43 (230)
256 2r8r_A Sensor protein; KDPD, P 42.1 10 0.00034 35.4 1.9 28 247-274 7-38 (228)
257 4b4t_M 26S protease regulatory 41.9 10 0.00035 38.3 2.0 47 226-276 194-246 (434)
258 3ld9_A DTMP kinase, thymidylat 41.6 10 0.00034 34.7 1.8 66 292-374 145-216 (223)
259 2v1u_A Cell division control p 41.6 9 0.00031 35.2 1.5 21 248-268 46-66 (387)
260 3con_A GTPase NRAS; structural 41.4 8.6 0.0003 31.8 1.2 32 238-269 13-44 (190)
261 1udx_A The GTP-binding protein 41.4 9.1 0.00031 38.2 1.6 124 247-375 158-327 (416)
262 1ye8_A Protein THEP1, hypothet 41.4 9.7 0.00033 33.0 1.6 28 249-276 3-31 (178)
263 2x8a_A Nuclear valosin-contain 41.3 12 0.00042 34.5 2.3 20 249-268 47-66 (274)
264 1aky_A Adenylate kinase; ATP:A 41.0 91 0.0031 26.8 7.8 30 343-373 190-219 (220)
265 1p5z_B DCK, deoxycytidine kina 41.0 8.7 0.0003 34.6 1.2 27 248-274 26-54 (263)
266 1iy2_A ATP-dependent metallopr 41.0 9.2 0.00031 34.7 1.4 20 249-268 76-95 (278)
267 3igf_A ALL4481 protein; two-do 40.9 21 0.00071 35.2 4.0 58 249-308 5-74 (374)
268 2fu5_C RAS-related protein RAB 40.8 8.2 0.00028 31.6 0.9 35 339-374 135-172 (183)
269 1sxj_C Activator 1 40 kDa subu 40.6 9.2 0.00032 35.7 1.4 36 226-269 34-69 (340)
270 2gj8_A MNME, tRNA modification 40.3 11 0.00038 31.3 1.7 30 248-277 6-36 (172)
271 2dby_A GTP-binding protein; GD 40.2 7.8 0.00027 38.1 0.8 32 248-279 3-34 (368)
272 2yvu_A Probable adenylyl-sulfa 40.0 19 0.00066 30.2 3.2 15 294-308 114-128 (186)
273 1u94_A RECA protein, recombina 39.7 12 0.0004 36.5 2.0 81 188-278 13-99 (356)
274 3ld9_A DTMP kinase, thymidylat 39.5 9.4 0.00032 34.9 1.2 28 248-275 23-55 (223)
275 1byi_A Dethiobiotin synthase; 39.2 13 0.00045 32.0 2.1 27 249-275 4-35 (224)
276 2ohf_A Protein OLA1, GTP-bindi 39.2 9.7 0.00033 38.1 1.3 32 248-279 24-55 (396)
277 1fnn_A CDC6P, cell division co 39.0 13 0.00043 34.5 2.0 29 249-277 47-80 (389)
278 4i1u_A Dephospho-COA kinase; s 39.0 14 0.00049 33.6 2.3 30 248-277 11-40 (210)
279 2g6b_A RAS-related protein RAB 38.8 7.6 0.00026 31.5 0.4 36 339-375 138-176 (180)
280 1wms_A RAB-9, RAB9, RAS-relate 38.6 13 0.00045 30.0 1.9 28 247-274 8-35 (177)
281 4a9a_A Ribosome-interacting GT 38.5 7.7 0.00026 38.4 0.5 43 246-288 72-114 (376)
282 2zej_A Dardarin, leucine-rich 38.2 11 0.00036 31.5 1.3 21 248-268 4-24 (184)
283 2f1r_A Molybdopterin-guanine d 38.0 6.4 0.00022 34.3 -0.2 30 249-278 5-38 (171)
284 1z0f_A RAB14, member RAS oncog 37.9 10 0.00035 30.6 1.1 24 247-270 16-39 (179)
285 3pxi_A Negative regulator of g 37.6 15 0.00051 38.6 2.6 23 247-269 202-224 (758)
286 3zq6_A Putative arsenical pump 37.6 24 0.00082 33.2 3.8 65 249-314 17-93 (324)
287 1cr0_A DNA primase/helicase; R 37.6 11 0.00037 34.4 1.3 26 249-274 38-68 (296)
288 3end_A Light-independent proto 37.5 14 0.00047 33.9 2.0 32 249-280 44-79 (307)
289 4b4t_I 26S protease regulatory 37.5 13 0.00045 37.8 2.0 54 218-275 187-246 (437)
290 2y8e_A RAB-protein 6, GH09086P 37.5 14 0.00048 29.7 1.8 26 244-269 12-37 (179)
291 4dzz_A Plasmid partitioning pr 37.3 13 0.00043 31.4 1.6 28 253-280 9-40 (206)
292 2zr9_A Protein RECA, recombina 37.1 14 0.00047 35.8 2.0 81 188-277 11-96 (349)
293 2erx_A GTP-binding protein DI- 37.1 15 0.00053 29.1 2.0 31 247-277 4-34 (172)
294 1z08_A RAS-related protein RAB 37.1 15 0.0005 29.4 1.9 23 247-269 7-29 (170)
295 3hdt_A Putative kinase; struct 37.1 14 0.00047 33.6 1.9 46 249-294 17-67 (223)
296 2xb4_A Adenylate kinase; ATP-b 37.1 76 0.0026 27.7 6.7 22 349-371 201-222 (223)
297 1iqp_A RFCS; clamp loader, ext 36.9 12 0.0004 33.8 1.4 21 249-269 49-69 (327)
298 3bc1_A RAS-related protein RAB 36.7 15 0.00052 29.9 1.9 36 338-374 148-186 (195)
299 3lxx_A GTPase IMAP family memb 36.6 13 0.00045 32.6 1.7 32 246-277 29-60 (239)
300 3e70_C DPA, signal recognition 36.6 14 0.00049 35.5 2.0 19 249-267 132-150 (328)
301 3lda_A DNA repair protein RAD5 36.5 11 0.00039 37.3 1.3 25 243-267 174-199 (400)
302 3rui_A Ubiquitin-like modifier 36.5 27 0.00092 34.3 4.0 69 110-188 89-170 (340)
303 1ek0_A Protein (GTP-binding pr 36.4 14 0.00047 29.4 1.6 24 247-270 4-27 (170)
304 1z2a_A RAS-related protein RAB 36.3 16 0.00054 29.1 1.9 25 247-271 6-30 (168)
305 1rj9_A FTSY, signal recognitio 35.9 12 0.00041 35.5 1.4 19 249-267 105-123 (304)
306 2chq_A Replication factor C sm 35.9 12 0.00042 33.5 1.4 21 249-269 41-61 (319)
307 1odf_A YGR205W, hypothetical 3 35.8 11 0.00039 35.4 1.2 19 249-267 34-52 (290)
308 3lv8_A DTMP kinase, thymidylat 35.5 12 0.0004 34.4 1.2 24 249-272 30-57 (236)
309 3l0i_B RAS-related protein RAB 35.4 9.8 0.00033 32.1 0.6 25 247-271 34-58 (199)
310 1sxj_B Activator 1 37 kDa subu 35.4 12 0.0004 33.7 1.2 21 249-269 45-65 (323)
311 2eq5_A 228AA long hypothetical 35.3 83 0.0028 27.6 6.7 120 98-233 7-143 (228)
312 3dci_A Arylesterase; SGNH_hydr 35.3 43 0.0015 29.0 4.7 22 169-190 177-198 (232)
313 2a5j_A RAS-related protein RAB 35.2 15 0.00051 30.6 1.7 35 339-374 148-185 (191)
314 3nkl_A UDP-D-quinovosamine 4-d 35.1 87 0.003 24.9 6.3 87 96-188 3-98 (141)
315 3tkl_A RAS-related protein RAB 35.1 16 0.00056 30.1 1.9 38 339-377 143-183 (196)
316 1x3s_A RAS-related protein RAB 35.0 10 0.00034 31.2 0.6 29 242-270 11-39 (195)
317 1oix_A RAS-related protein RAB 35.0 15 0.00052 31.0 1.7 23 247-269 30-52 (191)
318 3q85_A GTP-binding protein REM 35.0 14 0.00047 29.6 1.4 35 339-374 131-168 (169)
319 3cph_A RAS-related protein SEC 34.8 16 0.00056 30.6 1.9 25 247-271 21-45 (213)
320 2ce2_X GTPase HRAS; signaling 34.4 16 0.00054 28.7 1.7 23 247-269 4-26 (166)
321 4b4t_H 26S protease regulatory 34.3 14 0.00047 38.0 1.6 43 226-273 222-271 (467)
322 1in4_A RUVB, holliday junction 34.0 14 0.00046 34.9 1.4 38 226-268 34-73 (334)
323 3b9q_A Chloroplast SRP recepto 33.9 14 0.00047 35.0 1.4 19 249-267 103-121 (302)
324 3q72_A GTP-binding protein RAD 33.9 13 0.00043 29.8 1.0 35 339-374 128-165 (166)
325 3kjh_A CO dehydrogenase/acetyl 33.7 11 0.00039 32.4 0.7 28 249-276 3-34 (254)
326 1qvr_A CLPB protein; coiled co 33.6 15 0.00051 39.4 1.8 22 248-269 193-214 (854)
327 2jeo_A Uridine-cytidine kinase 33.5 14 0.00048 32.9 1.4 23 249-271 28-51 (245)
328 3o47_A ADP-ribosylation factor 33.4 29 0.001 32.7 3.6 29 248-277 167-195 (329)
329 3ug7_A Arsenical pump-driving 33.4 45 0.0015 31.8 5.0 80 228-314 15-107 (349)
330 3hu3_A Transitional endoplasmi 33.3 18 0.00063 36.6 2.3 22 248-269 240-261 (489)
331 2bme_A RAB4A, RAS-related prot 33.3 16 0.00056 29.8 1.6 37 338-375 136-175 (186)
332 1xp8_A RECA protein, recombina 33.3 17 0.00058 35.5 2.0 36 243-278 70-110 (366)
333 2pt5_A Shikimate kinase, SK; a 33.2 60 0.002 26.3 5.1 12 328-339 148-159 (168)
334 1ypw_A Transitional endoplasmi 33.2 23 0.0008 38.0 3.2 43 226-268 217-260 (806)
335 3fdi_A Uncharacterized protein 33.2 18 0.00062 31.8 2.0 27 249-275 9-36 (201)
336 4a26_A Putative C-1-tetrahydro 33.1 3.4E+02 0.012 26.1 12.2 152 94-274 36-193 (300)
337 2f9l_A RAB11B, member RAS onco 33.0 17 0.00059 30.6 1.8 35 338-373 131-168 (199)
338 3cbq_A GTP-binding protein REM 32.9 12 0.0004 31.9 0.7 37 339-376 152-191 (195)
339 2gf9_A RAS-related protein RAB 32.8 18 0.0006 30.0 1.8 35 339-374 149-186 (189)
340 1u8z_A RAS-related protein RAL 32.6 18 0.00061 28.5 1.7 25 246-270 4-28 (168)
341 1nlf_A Regulatory protein REPA 32.6 15 0.0005 33.4 1.3 24 244-267 27-51 (279)
342 2e87_A Hypothetical protein PH 32.6 19 0.00065 34.2 2.2 33 247-279 168-200 (357)
343 3lfu_A DNA helicase II; SF1 he 32.2 61 0.0021 32.6 5.9 52 249-316 25-76 (647)
344 3p2o_A Bifunctional protein fo 32.0 2.2E+02 0.0077 27.2 9.5 151 95-274 33-188 (285)
345 3k1j_A LON protease, ATP-depen 31.8 23 0.00078 36.4 2.7 34 226-269 50-83 (604)
346 2bcg_Y Protein YP2, GTP-bindin 31.6 18 0.00061 30.4 1.6 35 339-374 135-172 (206)
347 3j21_Z 50S ribosomal protein L 31.5 1E+02 0.0036 24.3 6.1 29 160-188 35-63 (99)
348 1g8f_A Sulfate adenylyltransfe 31.4 13 0.00044 38.3 0.8 25 350-374 482-506 (511)
349 1ni3_A YCHF GTPase, YCHF GTP-b 31.3 17 0.00057 36.2 1.6 32 248-279 22-54 (392)
350 3hr8_A Protein RECA; alpha and 31.3 19 0.00066 35.2 2.0 70 189-267 11-82 (356)
351 1nrj_B SR-beta, signal recogni 31.2 19 0.00065 30.6 1.7 26 247-272 13-38 (218)
352 2og2_A Putative signal recogni 31.2 16 0.00055 35.8 1.4 20 249-268 160-179 (359)
353 1zd8_A GTP:AMP phosphotransfer 31.2 1.1E+02 0.0038 26.4 6.8 24 349-374 192-215 (227)
354 2ged_A SR-beta, signal recogni 31.1 19 0.00066 29.7 1.7 26 246-271 48-73 (193)
355 3f4w_A Putative hexulose 6 pho 31.1 37 0.0013 29.4 3.6 100 151-253 70-187 (211)
356 2fh5_B SR-beta, signal recogni 31.0 20 0.00067 30.4 1.8 30 247-277 8-37 (214)
357 1jr3_A DNA polymerase III subu 30.9 16 0.00056 33.6 1.4 20 249-268 41-60 (373)
358 3ipz_A Monothiol glutaredoxin- 30.9 1.7E+02 0.006 22.8 7.4 59 146-204 6-73 (109)
359 2ce7_A Cell division protein F 30.7 19 0.00065 36.6 1.9 20 249-268 52-71 (476)
360 2lbw_A H/ACA ribonucleoprotein 30.6 87 0.003 25.9 5.7 42 160-203 40-82 (121)
361 2pez_A Bifunctional 3'-phospho 30.5 34 0.0012 28.5 3.2 23 351-373 153-175 (179)
362 3b85_A Phosphate starvation-in 30.4 26 0.00088 31.3 2.5 19 249-267 25-43 (208)
363 1zbd_A Rabphilin-3A; G protein 30.3 21 0.0007 29.9 1.8 25 247-271 9-33 (203)
364 1mh1_A RAC1; GTP-binding, GTPa 30.2 22 0.00075 28.8 1.9 34 339-373 143-180 (186)
365 1r8s_A ADP-ribosylation factor 30.0 18 0.00063 28.7 1.4 20 249-268 3-22 (164)
366 2axn_A 6-phosphofructo-2-kinas 29.8 18 0.00063 36.9 1.6 20 249-268 38-57 (520)
367 2f7s_A C25KG, RAS-related prot 29.7 22 0.00075 30.1 1.9 36 338-374 162-200 (217)
368 1bif_A 6-phosphofructo-2-kinas 29.7 16 0.00056 36.2 1.2 21 248-268 41-61 (469)
369 1a4i_A Methylenetetrahydrofola 29.7 1.2E+02 0.0039 29.5 7.1 150 95-274 35-193 (301)
370 3t1o_A Gliding protein MGLA; G 29.7 19 0.00066 29.4 1.4 38 338-376 154-195 (198)
371 1pzn_A RAD51, DNA repair and r 29.6 17 0.00059 34.9 1.3 25 243-267 127-152 (349)
372 3nbx_X ATPase RAVA; AAA+ ATPas 29.4 19 0.00064 36.8 1.6 22 248-269 43-64 (500)
373 2hxs_A RAB-26, RAS-related pro 29.3 21 0.0007 28.8 1.6 35 339-374 137-174 (178)
374 1sxj_E Activator 1 40 kDa subu 29.3 16 0.00056 33.6 1.1 20 249-268 39-58 (354)
375 4fmw_A RNA (guanine-9-)-methyl 29.2 48 0.0016 30.0 4.1 44 239-282 112-158 (197)
376 3llm_A ATP-dependent RNA helic 29.0 14 0.00047 32.7 0.5 15 247-261 77-91 (235)
377 3abi_A Putative uncharacterize 28.9 99 0.0034 29.3 6.5 120 99-227 18-151 (365)
378 2il1_A RAB12; G-protein, GDP, 28.8 20 0.00067 30.1 1.4 25 247-271 27-51 (192)
379 1g41_A Heat shock protein HSLU 28.7 24 0.00081 35.8 2.2 26 248-273 52-78 (444)
380 2efe_B Small GTP-binding prote 28.5 20 0.00068 29.0 1.3 24 246-269 12-35 (181)
381 3llu_A RAS-related GTP-binding 28.2 21 0.0007 30.1 1.4 24 245-268 19-42 (196)
382 1vg8_A RAS-related protein RAB 28.1 24 0.00083 29.3 1.9 24 246-269 8-31 (207)
383 1w41_A 50S ribosomal protein L 28.1 1.1E+02 0.0038 24.1 5.7 44 160-204 36-79 (101)
384 3pvs_A Replication-associated 28.0 26 0.00088 35.0 2.3 42 223-272 35-77 (447)
385 2fn4_A P23, RAS-related protei 28.0 25 0.00085 28.2 1.8 37 339-376 136-175 (181)
386 3of5_A Dethiobiotin synthetase 27.9 25 0.00087 31.7 2.1 28 249-276 7-39 (228)
387 1es9_A PAF-AH, platelet-activa 27.9 43 0.0015 28.8 3.4 49 145-193 115-179 (232)
388 4gie_A Prostaglandin F synthas 27.8 39 0.0014 31.4 3.4 43 144-186 152-194 (290)
389 3ihw_A Centg3; RAS, centaurin, 27.8 26 0.0009 29.3 2.0 30 241-270 15-44 (184)
390 2ale_A SNU13, NHP2/L7AE family 27.5 45 0.0015 28.4 3.4 43 160-204 52-95 (134)
391 2i3b_A HCR-ntpase, human cance 27.4 21 0.00073 31.3 1.4 29 249-277 4-36 (189)
392 1uf9_A TT1252 protein; P-loop, 27.3 50 0.0017 27.5 3.7 66 294-374 126-194 (203)
393 3kkq_A RAS-related protein M-R 27.2 28 0.00096 28.3 2.0 29 241-269 13-41 (183)
394 3cpq_A 50S ribosomal protein L 27.2 89 0.003 25.3 5.1 44 160-204 41-84 (110)
395 3tif_A Uncharacterized ABC tra 27.2 17 0.00058 32.9 0.7 19 249-267 34-52 (235)
396 2iwr_A Centaurin gamma 1; ANK 27.1 24 0.00081 28.6 1.6 28 244-271 5-32 (178)
397 2oil_A CATX-8, RAS-related pro 26.9 25 0.00084 29.1 1.7 36 338-374 151-189 (193)
398 3pqc_A Probable GTP-binding pr 26.9 47 0.0016 27.0 3.4 25 245-269 22-46 (195)
399 3cnl_A YLQF, putative uncharac 26.8 23 0.00079 32.6 1.6 33 247-279 100-133 (262)
400 1tue_A Replication protein E1; 26.8 19 0.00066 33.3 1.1 78 169-274 9-87 (212)
401 2v9p_A Replication protein E1; 26.8 21 0.00072 34.2 1.4 20 249-268 129-148 (305)
402 1qop_A Tryptophan synthase alp 26.7 21 0.00073 33.0 1.3 105 149-254 113-235 (268)
403 3tmk_A Thymidylate kinase; pho 26.7 20 0.00069 32.4 1.2 21 249-269 8-28 (216)
404 2j0v_A RAC-like GTP-binding pr 26.6 33 0.0011 28.9 2.4 38 337-375 141-182 (212)
405 2z4s_A Chromosomal replication 26.5 21 0.00073 35.2 1.4 21 248-268 132-152 (440)
406 3n6q_A YGHZ aldo-keto reductas 26.5 83 0.0028 29.7 5.5 30 163-193 196-226 (346)
407 3gx8_A Monothiol glutaredoxin- 26.5 2.1E+02 0.0071 23.1 7.2 59 146-204 4-74 (121)
408 1svm_A Large T antigen; AAA+ f 26.4 25 0.00086 34.6 1.9 27 248-274 171-198 (377)
409 1y8q_A Ubiquitin-like 1 activa 26.2 1.6E+02 0.0055 28.3 7.5 78 98-188 78-156 (346)
410 2ew1_A RAS-related protein RAB 26.2 25 0.00085 30.2 1.6 23 247-269 27-49 (201)
411 3aez_A Pantothenate kinase; tr 26.2 22 0.00077 33.7 1.4 19 249-267 93-111 (312)
412 1zd9_A ADP-ribosylation factor 26.2 27 0.00092 29.0 1.8 25 247-271 23-47 (188)
413 1z06_A RAS-related protein RAB 26.1 28 0.00096 28.7 1.9 23 247-269 21-43 (189)
414 2vos_A Folylpolyglutamate synt 26.1 21 0.00073 35.9 1.3 27 250-276 65-96 (487)
415 2p5s_A RAS and EF-hand domain 26.0 26 0.0009 29.4 1.7 25 246-270 28-52 (199)
416 2oze_A ORF delta'; para, walke 25.8 29 0.00098 31.4 2.0 23 254-276 45-71 (298)
417 1cp2_A CP2, nitrogenase iron p 25.8 30 0.001 30.7 2.0 26 251-276 6-35 (269)
418 1pui_A ENGB, probable GTP-bind 25.7 18 0.0006 30.5 0.5 20 248-267 28-47 (210)
419 2aif_A Ribosomal protein L7A; 25.6 1.3E+02 0.0045 25.3 6.0 42 160-203 61-103 (135)
420 4tmk_A Protein (thymidylate ki 25.6 22 0.00076 31.9 1.2 23 249-271 6-32 (213)
421 3iz5_f 60S ribosomal protein L 25.6 1.1E+02 0.0038 25.1 5.4 44 160-204 46-89 (112)
422 1g5t_A COB(I)alamin adenosyltr 25.5 35 0.0012 31.0 2.5 59 221-281 5-67 (196)
423 1fxw_F Alpha2, platelet-activa 25.4 41 0.0014 29.1 2.9 48 145-192 116-179 (229)
424 3cpj_B GTP-binding protein YPT 25.3 27 0.00093 30.0 1.7 36 339-375 140-178 (223)
425 1c1y_A RAS-related protein RAP 25.2 29 0.001 27.4 1.8 23 247-269 4-26 (167)
426 1sq5_A Pantothenate kinase; P- 25.1 24 0.00081 33.0 1.3 20 249-268 83-102 (308)
427 2o52_A RAS-related protein RAB 25.0 24 0.00084 29.8 1.3 38 339-377 152-192 (200)
428 3u5e_c L32, RP73, YL38, 60S ri 25.0 1.3E+02 0.0044 24.2 5.6 44 160-204 42-85 (105)
429 2gf0_A GTP-binding protein DI- 24.9 29 0.001 28.6 1.8 36 339-375 135-173 (199)
430 2nzj_A GTP-binding protein REM 24.9 26 0.0009 28.0 1.4 35 340-375 134-171 (175)
431 1m7b_A RND3/RHOE small GTP-bin 24.9 28 0.00097 28.7 1.6 23 247-269 8-30 (184)
432 4a18_G RPL30; ribosome, eukary 24.7 1.3E+02 0.0045 24.0 5.6 44 160-204 42-85 (104)
433 3uhf_A Glutamate racemase; str 24.7 1.6E+02 0.0055 27.7 7.0 87 108-200 33-128 (274)
434 1vq8_F 50S ribosomal protein L 24.5 75 0.0026 26.0 4.2 42 160-203 49-91 (120)
435 1fzq_A ADP-ribosylation factor 24.4 24 0.00081 29.3 1.1 24 246-269 16-39 (181)
436 2yc2_C IFT27, small RAB-relate 24.4 53 0.0018 27.1 3.3 36 338-374 154-193 (208)
437 1z0j_A RAB-22, RAS-related pro 24.4 29 0.001 27.5 1.6 23 247-269 7-29 (170)
438 2pcj_A ABC transporter, lipopr 24.4 25 0.00086 31.4 1.3 19 249-267 33-51 (224)
439 2atv_A RERG, RAS-like estrogen 24.3 30 0.001 28.9 1.7 25 246-270 28-52 (196)
440 2xzm_U Ribosomal protein L7AE 24.3 93 0.0032 26.1 4.8 41 160-202 44-85 (126)
441 3f9v_A Minichromosome maintena 24.3 22 0.00075 36.9 1.0 23 247-269 328-350 (595)
442 2bov_A RAla, RAS-related prote 24.2 30 0.001 28.7 1.7 36 338-374 140-178 (206)
443 2a9k_A RAS-related protein RAL 24.1 28 0.00095 28.1 1.4 37 338-375 144-183 (187)
444 4gac_A Alcohol dehydrogenase [ 24.1 58 0.002 30.3 3.8 44 144-187 165-208 (324)
445 4gsl_A Ubiquitin-like modifier 24.0 55 0.0019 34.8 4.0 69 110-188 381-462 (615)
446 3pxi_A Negative regulator of g 24.0 25 0.00085 37.0 1.4 22 248-269 523-544 (758)
447 1rlg_A 50S ribosomal protein L 24.0 82 0.0028 25.8 4.3 42 160-203 47-89 (119)
448 2ocp_A DGK, deoxyguanosine kin 23.9 1.6E+02 0.0056 25.7 6.6 71 292-372 149-232 (241)
449 2fna_A Conserved hypothetical 23.9 24 0.00084 31.8 1.1 21 248-268 32-52 (357)
450 1r2q_A RAS-related protein RAB 23.9 28 0.00097 27.5 1.4 22 247-268 7-28 (170)
451 3clv_A RAB5 protein, putative; 23.8 33 0.0011 27.8 1.9 36 338-374 167-205 (208)
452 1xbi_A 50S ribosomal protein L 23.7 82 0.0028 26.0 4.3 42 160-203 49-91 (120)
453 1w5s_A Origin recognition comp 23.6 23 0.0008 33.0 1.0 30 249-278 53-94 (412)
454 1kao_A RAP2A; GTP-binding prot 23.6 32 0.0011 27.0 1.7 23 246-268 3-25 (167)
455 2fc3_A 50S ribosomal protein L 23.5 82 0.0028 26.0 4.2 42 160-203 48-90 (124)
456 3m6a_A ATP-dependent protease 23.3 26 0.0009 35.7 1.4 21 248-268 110-130 (543)
457 3gmt_A Adenylate kinase; ssgci 23.3 32 0.0011 31.8 1.8 29 248-276 10-39 (230)
458 2d00_A V-type ATP synthase sub 23.2 1.3E+02 0.0045 24.5 5.4 73 95-186 1-76 (109)
459 1zj6_A ADP-ribosylation factor 23.2 39 0.0013 27.8 2.2 22 247-268 17-38 (187)
460 3t5g_A GTP-binding protein RHE 23.2 29 0.00099 28.2 1.4 40 338-378 132-174 (181)
461 3c5c_A RAS-like protein 12; GD 23.2 32 0.0011 28.7 1.7 34 339-373 149-186 (187)
462 1r6b_X CLPA protein; AAA+, N-t 23.2 25 0.00085 36.8 1.2 23 247-269 208-230 (758)
463 2fz4_A DNA repair protein RAD2 23.2 40 0.0014 30.1 2.4 22 248-269 110-131 (237)
464 3jy6_A Transcriptional regulat 23.1 3E+02 0.01 23.8 8.1 94 133-256 38-133 (276)
465 3kta_A Chromosome segregation 23.1 21 0.00073 29.7 0.5 14 249-262 29-42 (182)
466 2cjw_A GTP-binding protein GEM 23.1 33 0.0011 29.0 1.7 21 247-267 7-27 (192)
467 2qen_A Walker-type ATPase; unk 23.1 26 0.0009 31.6 1.2 23 248-270 33-56 (350)
468 1wxq_A GTP-binding protein; st 23.0 27 0.00092 34.4 1.3 32 249-280 3-34 (397)
469 1gwn_A RHO-related GTP-binding 22.8 32 0.0011 29.5 1.6 23 247-269 29-51 (205)
470 4b3f_X DNA-binding protein smu 22.8 45 0.0015 34.4 3.0 32 226-267 195-226 (646)
471 2xw6_A MGS, methylglyoxal synt 22.7 1.2E+02 0.0041 26.0 5.2 82 106-202 36-128 (134)
472 3bwd_D RAC-like GTP-binding pr 22.6 34 0.0012 27.6 1.7 24 246-269 8-31 (182)
473 3u61_B DNA polymerase accessor 22.6 32 0.0011 31.5 1.7 26 249-274 50-77 (324)
474 3r7w_B Gtpase2, GTP-binding pr 22.6 42 0.0014 32.8 2.6 19 249-267 2-20 (331)
475 2qtf_A Protein HFLX, GTP-bindi 22.6 29 0.00099 33.7 1.4 169 100-278 5-211 (364)
476 1r6b_X CLPA protein; AAA+, N-t 22.5 35 0.0012 35.6 2.2 24 247-270 489-513 (758)
477 2dhr_A FTSH; AAA+ protein, hex 22.3 28 0.00097 35.5 1.4 20 249-268 67-86 (499)
478 1htw_A HI0065; nucleotide-bind 22.2 30 0.001 29.5 1.4 20 249-268 36-55 (158)
479 2jfz_A Glutamate racemase; cel 22.1 2.5E+02 0.0085 25.4 7.6 84 110-199 11-103 (255)
480 2hup_A RAS-related protein RAB 22.1 34 0.0012 29.0 1.6 37 338-375 155-195 (201)
481 2fn9_A Ribose ABC transporter, 22.0 1.7E+02 0.0057 25.5 6.2 53 135-188 35-89 (290)
482 1tt5_A APPBP1, amyloid protein 21.9 1.6E+02 0.0053 30.4 6.8 81 98-188 74-155 (531)
483 3oes_A GTPase rhebl1; small GT 21.9 32 0.0011 28.8 1.5 36 339-375 151-189 (201)
484 2eyu_A Twitching motility prot 21.9 31 0.001 31.8 1.4 19 249-267 28-46 (261)
485 1mv5_A LMRA, multidrug resista 21.8 30 0.001 31.3 1.3 19 249-267 31-49 (243)
486 1upt_A ARL1, ADP-ribosylation 21.8 36 0.0012 27.0 1.7 22 247-268 8-29 (171)
487 2fg5_A RAB-22B, RAS-related pr 21.8 34 0.0012 28.4 1.6 34 338-372 149-185 (192)
488 3zyw_A Glutaredoxin-3; metal b 21.8 2.6E+02 0.009 22.0 6.9 58 147-204 5-71 (111)
489 4f2d_A L-arabinose isomerase; 21.8 55 0.0019 33.6 3.4 83 96-187 5-102 (500)
490 3l6u_A ABC-type sugar transpor 21.8 2E+02 0.0068 25.0 6.7 102 134-255 40-144 (293)
491 3gd7_A Fusion complex of cysti 21.7 30 0.001 34.3 1.3 20 249-268 50-69 (390)
492 2yvq_A Carbamoyl-phosphate syn 21.7 1.6E+02 0.0056 24.7 5.9 43 149-191 87-134 (143)
493 1svi_A GTP-binding protein YSX 21.7 34 0.0012 28.2 1.5 24 246-269 23-46 (195)
494 4dsu_A GTPase KRAS, isoform 2B 21.6 37 0.0013 27.5 1.7 36 339-375 130-168 (189)
495 3jyw_G 60S ribosomal protein L 21.3 47 0.0016 27.7 2.3 55 148-204 31-88 (113)
496 3rlf_A Maltose/maltodextrin im 21.2 31 0.0011 34.2 1.4 19 249-267 32-50 (381)
497 2j1l_A RHO-related GTP-binding 21.1 32 0.0011 29.4 1.3 43 217-268 14-56 (214)
498 3hjn_A DTMP kinase, thymidylat 21.1 39 0.0013 29.6 1.9 26 249-274 3-32 (197)
499 3e1s_A Exodeoxyribonuclease V, 20.9 39 0.0013 34.9 2.1 30 247-276 205-238 (574)
500 3h8q_A Thioredoxin reductase 3 20.9 3E+02 0.01 21.4 7.4 57 148-204 7-70 (114)
No 1
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.67 E-value=0.00031 Score=58.62 Aligned_cols=119 Identities=18% Similarity=0.103 Sum_probs=72.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccCC-CC-----------CCc-------------cccc------------
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVMG-VE-----------LPK-------------SLFQ------------ 290 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLVp~-v~-----------lP~-------------eLf~------------ 290 (387)
|+|.|.|+||||=++-.||+ .||.+-+-+.... .. +.. ..|.
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~ 83 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNKLADEDNVIIDRFVYSNLVYAKKFKDYSILTER 83 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTCHHHHHHHHHHHTTCCSEEEESCHHHHHHHTTTBTTCCCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhHHHHHHHHHHHHHhCCCeEEeeeecchHHHHHHHHHhhHhhHH
Confidence 79999999999999999995 4877654432110 00 000 0000
Q ss_pred ---------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHH
Q 016570 291 ---------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIE 361 (387)
Q Consensus 291 ---------v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIE 361 (387)
..+..+|-|+.+++.+.+--..| +-+ ...-...+++.+..+.-...+. . .+-+||.+++++|
T Consensus 84 ~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r----~r~---~~~~~~~~~~~~~~~~~~~~~~-~-~~~~id~~~~~~~ 154 (173)
T 3kb2_A 84 QLRFIEDKIKAKAKVVYLHADPSVIKKRLRVR----GDE---YIEGKDIDSILELYREVMSNAG-L-HTYSWDTGQWSSD 154 (173)
T ss_dssp HHHHHHHHHTTTEEEEEEECCHHHHHHHHHHH----SCS---CCCHHHHHHHHHHHHHHHHTCS-S-CEEEEETTTSCHH
T ss_pred HHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc----CCc---chhhhHHHHHHHHHHHHHhhcC-C-CEEEEECCCCCHH
Confidence 13457899999999887633344 211 1111112333333332222332 2 5788999999999
Q ss_pred HHHHHHHHHHhcccc
Q 016570 362 ETAAVVLRLYHDRKH 376 (387)
Q Consensus 362 EtAa~Il~~~~~r~~ 376 (387)
|++..|++.++...+
T Consensus 155 ev~~~I~~~~~~~~~ 169 (173)
T 3kb2_A 155 EIAKDIIFLVELEHH 169 (173)
T ss_dssp HHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999977543
No 2
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.10 E-value=0.00031 Score=60.04 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=69.6
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCCccccc---------------------------------
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELPKSLFQ--------------------------------- 290 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLVp----~v~lP~eLf~--------------------------------- 290 (387)
|+|+|.++||||-++-.||+ .|+.+-+.--+- +.+++ ++|+
T Consensus 8 i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg~~~ 86 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIA-WIFEMEGEAGFRRREREMIEALCKLDNIILATGGGVV 86 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSCHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCTTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCChh-hHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCCcee
Confidence 89999999999999999995 477655421110 11111 1100
Q ss_pred c---------CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC---HHHHHHHHHHHHHHhhhCCCCcEEeCCCc
Q 016570 291 V---------DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE---MDYVREELEFAGRIFAQNPVWPVIEVTGK 358 (387)
Q Consensus 291 v---------~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~---~e~I~~EL~~A~~lf~k~~g~pvIDVT~k 358 (387)
. ....+|=|+.+++.|. +|+...+-. ....+.+ .+.+++=...-+.+|++. ..-+||+++.
T Consensus 87 ~~~~~~~~l~~~~~vi~L~~~~e~l~----~Rl~~~~~~--~rp~~~~~~~~~~l~~~~~~r~~~y~~~-ad~~Idt~~~ 159 (185)
T 3trf_A 87 LDEKNRQQISETGVVIYLTASIDTQL----KRIGQKGEM--RRPLFIKNNSKEKLQQLNEIRKPLYQAM-ADLVYPTDDL 159 (185)
T ss_dssp GSHHHHHHHHHHEEEEEEECCHHHHH----HHHHCCTTC--SSCCCCCHHHHHHHHHHHHHHHHHHHHH-CSEEEECTTC
T ss_pred cCHHHHHHHHhCCcEEEEECCHHHHH----HHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHHHhhc-CCEEEECCCC
Confidence 0 0124677788877653 455111100 0112333 233443334444566663 4679999999
Q ss_pred cHHHHHHHHHHHHhccc
Q 016570 359 AIEETAAVVLRLYHDRK 375 (387)
Q Consensus 359 SIEEtAa~Il~~~~~r~ 375 (387)
++||++..|++.+..+.
T Consensus 160 ~~~e~~~~I~~~l~~~~ 176 (185)
T 3trf_A 160 NPRQLATQILVDIKQTY 176 (185)
T ss_dssp CHHHHHHHHHHHSCC--
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999987653
No 3
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.05 E-value=0.00076 Score=58.79 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=72.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----------CCCCC-----------------------------c--
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----------GVELP-----------------------------K-- 286 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLVp----------~v~lP-----------------------------~-- 286 (387)
|+|+|.|++|||=++-.||. .|+.+-+---+. +..+. .
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~~~~~~~~ 100 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSALKRSY 100 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEECCCCSHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 99999999999999999995 487654321110 00000 0
Q ss_pred --ccccc--CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHH
Q 016570 287 --SLFQV--DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEE 362 (387)
Q Consensus 287 --eLf~v--~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEE 362 (387)
.|.+. .+..+|-|+.+++.|.+--..|- ..+.+.+.++.-++..+.++... .+-+||++ .++||
T Consensus 101 ~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~-~~~~e 168 (202)
T 3t61_A 101 RDKLRESAPGGLAFVFLHGSESVLAERMHHRT----------GHFMPSSLLQTQLETLEDPRGEV-RTVAVDVA-QPLAE 168 (202)
T ss_dssp HHHHHHTSTTCCEEEEEECCHHHHHHHHHHHH----------SSCCCHHHHHHHHHHCCCCTTST-TEEEEESS-SCHHH
T ss_pred HHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhh----------ccCCCHHHHHHHHHhcCCCCCCC-CeEEEeCC-CCHHH
Confidence 11111 11368999999988876444443 12334555544444444444443 57799998 99999
Q ss_pred HHHHHHHHHhccc
Q 016570 363 TAAVVLRLYHDRK 375 (387)
Q Consensus 363 tAa~Il~~~~~r~ 375 (387)
++..|++.+....
T Consensus 169 ~~~~I~~~l~~~~ 181 (202)
T 3t61_A 169 IVREALAGLARLA 181 (202)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999997653
No 4
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.00 E-value=0.0029 Score=54.45 Aligned_cols=68 Identities=24% Similarity=0.162 Sum_probs=46.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh----hhCCCCcEEeCCCccHHHHHHHHH
Q 016570 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIF----AQNPVWPVIEVTGKAIEETAAVVL 368 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf----~k~~g~pvIDVT~kSIEEtAa~Il 368 (387)
...+|=|+.+++.+.+-+..|. +.+.+.+++.+..-...+ .+...+-+||++++++||++..|+
T Consensus 136 ~d~~i~l~a~~e~~~~R~~~r~------------~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~ 203 (208)
T 3ake_A 136 AAHKFYLTASPEVRAWRRARER------------PQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVL 203 (208)
T ss_dssp CSEEEEEECCHHHHHHHHHHTS------------SSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHhhc------------ccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHH
Confidence 4568889999988766443342 134566766665433333 332235899999999999999999
Q ss_pred HHHh
Q 016570 369 RLYH 372 (387)
Q Consensus 369 ~~~~ 372 (387)
+++.
T Consensus 204 ~~~~ 207 (208)
T 3ake_A 204 AHIR 207 (208)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
No 5
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.89 E-value=0.0015 Score=53.66 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=69.2
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec-----------------------------c--------------------cc
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVANV-----------------------------P--------------------IV 279 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~-----------------------------P--------------------LV 279 (387)
|+|.|.++||||=++-.|...|+.+-.. + ++
T Consensus 4 I~l~G~~GsGKsT~a~~L~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~ 83 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVF 83 (179)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCCSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 7899999999999999997778887662 0 00
Q ss_pred CCCCCCc------cccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHH----HHHHHHhhhCCC
Q 016570 280 MGVELPK------SLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREEL----EFAGRIFAQNPV 349 (387)
Q Consensus 280 p~v~lP~------eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL----~~A~~lf~k~~g 349 (387)
.++.-|. .++. .+..+|-|+.+++.+.+ |+..-|-+. .-.+.+.+.+.+ .+....+.+. .
T Consensus 84 dg~~~~~~~~~l~~~~~-~~~~~i~l~~~~~~~~~----R~~~R~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~-a 153 (179)
T 3lw7_A 84 DGVRSLAEVEEFKRLLG-DSVYIVAVHSPPKIRYK----RMIERLRSD----DSKEISELIRRDREELKLGIGEVIAM-A 153 (179)
T ss_dssp ECCCCHHHHHHHHHHHC-SCEEEEEEECCHHHHHH----HHHTCC--------CCCHHHHHHHHHHHHHHTHHHHHHT-C
T ss_pred eCCCCHHHHHHHHHHhC-CCcEEEEEECCHHHHHH----HHHhccCCC----CcchHHHHHHHHHhhhccChHhHHHh-C
Confidence 1211111 1111 22368899999977655 443223211 113445554443 2223334454 5
Q ss_pred CcEEeCCCccHHHHHHHHHHHHhc
Q 016570 350 WPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 350 ~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
.-+||.++ ++||+...|.+++..
T Consensus 154 d~vId~~~-~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 154 DYIITNDS-NYEEFKRRCEEVTDR 176 (179)
T ss_dssp SEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CEEEECCC-CHHHHHHHHHHHHHH
Confidence 67899666 999999999998864
No 6
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.88 E-value=0.0073 Score=52.90 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=47.8
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH---------HHhhhCCCCcEEeCCCccHHHHH
Q 016570 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG---------RIFAQNPVWPVIEVTGKAIEETA 364 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~---------~lf~k~~g~pvIDVT~kSIEEtA 364 (387)
..+|=|+.+++.+.+-+..|+..-|+ ..+.+.+++.+..-. .++... ..-+||++++++||++
T Consensus 137 ~~vi~l~a~~e~~~~R~~~~~~~r~~-------~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~-d~~~Id~~~~~~ee~~ 208 (219)
T 2h92_A 137 DLKVYMIASVEERAERRYKDNQLRGI-------ESNFEDLKRDIEARDQYDMNREISPLRKAD-DAVTLDTTGKSIEEVT 208 (219)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHCSSSCSCCCT-TCEEEECTTCCHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCc-------ccCHHHHHHHHHHHHHhhhhhhccccccCC-CeEEEECCCCCHHHHH
Confidence 45788888888776644333322233 125667766663221 233332 4589999999999999
Q ss_pred HHHHHHHhccc
Q 016570 365 AVVLRLYHDRK 375 (387)
Q Consensus 365 a~Il~~~~~r~ 375 (387)
..|++++..++
T Consensus 209 ~~I~~~l~~~~ 219 (219)
T 2h92_A 209 DEILAMVSQIK 219 (219)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHhccC
Confidence 99999987653
No 7
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.86 E-value=0.0059 Score=55.97 Aligned_cols=75 Identities=13% Similarity=0.040 Sum_probs=47.1
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--------hCCCCcEEeCCCccHHHHHH
Q 016570 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFA--------QNPVWPVIEVTGKAIEETAA 365 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~--------k~~g~pvIDVT~kSIEEtAa 365 (387)
..+|-|+.+++...+-|...++..|.. .+.+.+.+++..-...-. +...--+||+|++++||+..
T Consensus 164 ~~~ifl~A~~e~r~~R~~~~l~~~~~~-------~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~ 236 (252)
T 4e22_A 164 PVKIFLDASSQERAHRRMLQLQERGFN-------VNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIE 236 (252)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHTCC-------CCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHH
Confidence 456789999998766555555444431 356677666533221111 10012589999999999999
Q ss_pred HHHHHHhccc
Q 016570 366 VVLRLYHDRK 375 (387)
Q Consensus 366 ~Il~~~~~r~ 375 (387)
.|++++..+.
T Consensus 237 ~I~~~i~~~~ 246 (252)
T 4e22_A 237 QALAYAQRIL 246 (252)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999997654
No 8
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.75 E-value=0.0026 Score=54.10 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=71.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecccc----CCCCC--------------------------Cccccc-------
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIV----MGVEL--------------------------PKSLFQ------- 290 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLV----p~v~l--------------------------P~eLf~------- 290 (387)
|+|+|.++||||=++-.|| ..|+..-+.=.+ .+.++ ...++.
T Consensus 7 i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~~~~ 86 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGFVN 86 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTGGG
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCCEeh
Confidence 8999999999999999999 457654322000 00000 000000
Q ss_pred ----cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHH
Q 016570 291 ----VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAV 366 (387)
Q Consensus 291 ----v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~ 366 (387)
.+...+|-|+.+++.+.+-...|.. . . .....+.+.+++-+..-..+|.+. ..-+||++++++||++..
T Consensus 87 ~~~l~~~~~~i~l~~~~e~~~~R~~~r~~--~-~---r~~~~~~~~i~~~~~~r~~~y~~~-~~~~Idt~~~~~eev~~~ 159 (175)
T 1via_A 87 VSNLEKAGFCIYLKADFEYLKKRLDKDEI--S-K---RPLFYDEIKAKKLYNERLSKYEQK-ANFILNIENKNIDELLSE 159 (175)
T ss_dssp STTGGGGCEEEEEECCHHHHTTCCCGGGT--T-T---SCTTCCHHHHHHHHHHHHHHHHHH-CSEEEECTTCCHHHHHHH
T ss_pred hhHHhcCCEEEEEeCCHHHHHHHHhcccC--C-C---CCCcccHHHHHHHHHHHHHHHHhc-CCEEEECCCCCHHHHHHH
Confidence 0224688899998876552222210 0 1 112233566665555555667664 578999999999999999
Q ss_pred HHHHHhcc
Q 016570 367 VLRLYHDR 374 (387)
Q Consensus 367 Il~~~~~r 374 (387)
|++.+..-
T Consensus 160 I~~~l~~~ 167 (175)
T 1via_A 160 IKKVIKEG 167 (175)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhc
Confidence 99998643
No 9
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.73 E-value=0.004 Score=54.44 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=72.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecccc-C---CCCC--------------------------Cccccc-------
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIV-M---GVEL--------------------------PKSLFQ------- 290 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLV-p---~v~l--------------------------P~eLf~------- 290 (387)
|+|+|.|+||||=++-.|| ..|+..-+.--+ . +..+ ...+..
T Consensus 28 i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~ggg~~~ 107 (199)
T 3vaa_A 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVISTGGGAPC 107 (199)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECCTTGGG
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECCCcEEc
Confidence 8999999999999999999 457665432100 0 0000 000100
Q ss_pred --------cCCCcEEEEecChhHHHH-HHHHHHhhcCCCCCCCCCCCC-HHHHHHHHHHHHHHhhhCCCCcEEeCCCccH
Q 016570 291 --------VDPEKVFGLTINPLVLQS-IRKARARSLGFRDEIRSNYSE-MDYVREELEFAGRIFAQNPVWPVIEVTGKAI 360 (387)
Q Consensus 291 --------v~~~KI~GLTIdPerL~~-IR~eRlk~lGl~~~~~S~YA~-~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSI 360 (387)
.....+|-|+.+++.|.+ +++.|. .-.+- .+....+ .+.+++-++.-..+|++ ..-+||++++++
T Consensus 108 ~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~-~Rp~~--~~~~~~~~~~~i~~~~~~r~~~y~~--ad~~Idt~~~s~ 182 (199)
T 3vaa_A 108 FYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQ-QRPIL--QGKEDDELMDFIIQALEKRAPFYTQ--AQYIFNADELED 182 (199)
T ss_dssp STTHHHHHHHHSEEEEEECCHHHHHHHHHHTGG-GCGGG--TTCCHHHHHHHHHHHHHHHHHHHTT--SSEEEECCCCSS
T ss_pred cHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCC-CCCCc--CCCChhhHHHHHHHHHHHHHHHHhh--CCEEEECCCCCH
Confidence 013568889999998865 211111 00000 0111111 34566666666667776 367999999999
Q ss_pred HHHHHHHHHHHhcc
Q 016570 361 EETAAVVLRLYHDR 374 (387)
Q Consensus 361 EEtAa~Il~~~~~r 374 (387)
||++..|++.+...
T Consensus 183 ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 183 RWQIESSVQRLQEL 196 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 10
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.64 E-value=0.0068 Score=51.22 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=44.3
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH----HH---HHhhhCCCCcEEeCCCccHHHHHHH
Q 016570 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF----AG---RIFAQNPVWPVIEVTGKAIEETAAV 366 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~----A~---~lf~k~~g~pvIDVT~kSIEEtAa~ 366 (387)
..+|-|+.+++.+.+-..+|-..-+-. -.+.+.+++.+.. .+ ..|.+.-.|.+||.+ +++||++..
T Consensus 115 ~~~i~l~~~~e~~~~R~~~R~~~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~-~~~~~v~~~ 187 (196)
T 1tev_A 115 SFVLFFDCNNEICIERCLERGKSSGRS------DDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDAS-KSVDEVFDE 187 (196)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHTSSCC------SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETT-SCHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHcccccCCCC------CCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECC-CCHHHHHHH
Confidence 468899999988776444553211211 1123444333322 11 145553245689998 999999999
Q ss_pred HHHHHhc
Q 016570 367 VLRLYHD 373 (387)
Q Consensus 367 Il~~~~~ 373 (387)
|.+.+.+
T Consensus 188 i~~~l~~ 194 (196)
T 1tev_A 188 VVQIFDK 194 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998864
No 11
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.57 E-value=0.0061 Score=52.00 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=41.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-HHHhhhCC-CCcEEeCCCccHHHHHHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-GRIFAQNP-VWPVIEVTGKAIEETAAVVLR 369 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A-~~lf~k~~-g~pvIDVT~kSIEEtAa~Il~ 369 (387)
.+..+|=|+.+|+.+.+-...| + .|... .+.+.+... .++..+.. .|-+||. +.++||+...|++
T Consensus 121 ~~d~vi~l~~~~e~~~~Rl~~R----~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Id~-~~~~e~~~~~i~~ 187 (197)
T 2z0h_A 121 IPDLTFYIDVDVETALKRKGEL----N-------RFEKR-EFLERVREGYLVLAREHPERIVVLDG-KRSIEEIHRDVVR 187 (197)
T ss_dssp CCSEEEEEECCHHHHHHHC-------C-------CCCCH-HHHHHHHHHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHhcc----C-------cccHH-HHHHHHHHHHHHHHHhCCCCEEEEeC-CCCHHHHHHHHHH
Confidence 3567899999998766533333 1 23332 333333322 23333221 4678995 6899999999999
Q ss_pred HHhcc
Q 016570 370 LYHDR 374 (387)
Q Consensus 370 ~~~~r 374 (387)
.+...
T Consensus 188 ~l~~~ 192 (197)
T 2z0h_A 188 EVKRR 192 (197)
T ss_dssp HTTCC
T ss_pred HHHHH
Confidence 98654
No 12
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.42 E-value=0.0018 Score=55.23 Aligned_cols=117 Identities=24% Similarity=0.264 Sum_probs=67.1
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeecccc-------------------C--------------CCCC----Ccccc
Q 016570 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIV-------------------M--------------GVEL----PKSLF 289 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLV-------------------p--------------~v~l----P~eLf 289 (387)
=|+|.|.|+||||=++-.|| ..|+.+-+.--+ . +.-+ ...+|
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~~~~~~~~ 92 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYHGCDFF 92 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCCEEEECSCCTTS
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCCEEEEechhhhc
Confidence 38999999999999999999 457776544110 0 0000 01111
Q ss_pred cc-CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC---HHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHH--
Q 016570 290 QV-DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE---MDYVREELEFAGRIFAQNPVWPVIEVTGKAIEET-- 363 (387)
Q Consensus 290 ~v-~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~---~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEt-- 363 (387)
.- ....+|=|+.+++.|.+--.+| |... + ...+ .+.++.-++....+|.. ..+||++++++||+
T Consensus 93 ~~~~~~~vi~L~~~~e~l~~R~~~r----~~~~-~--~~~~~~~~~~~~~~~~~~~~~y~~---~~~i~~~~~~~~ev~~ 162 (180)
T 3iij_A 93 PERWFHIVFVLRTDTNVLYERLETR----GYNE-K--KLTDNIQCEIFQVLYEEATASYKE---EIVHQLPSNKPEELEN 162 (180)
T ss_dssp CGGGCSEEEEEECCHHHHHHHHHHT----TCCH-H--HHHHHHHHHHTTHHHHHHHHHSCG---GGEEEEECSSHHHHHH
T ss_pred chhcCCEEEEEECCHHHHHHHHHHc----CCCH-H--HHHHHHHHHHHHHHHHHHHHHcCC---CeEEEcCCCCHHHHHH
Confidence 11 1357888999999887633333 2110 0 0000 01122222333444432 57999999999999
Q ss_pred -HHHHHHHHhcc
Q 016570 364 -AAVVLRLYHDR 374 (387)
Q Consensus 364 -Aa~Il~~~~~r 374 (387)
+..|++.+.++
T Consensus 163 ~v~~i~~~l~~~ 174 (180)
T 3iij_A 163 NVDQILKWIEQW 174 (180)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 66677766554
No 13
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.28 E-value=0.032 Score=50.02 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=45.5
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH----------HhhhCCCCcEEeCCCccHHHH
Q 016570 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGR----------IFAQNPVWPVIEVTGKAIEET 363 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~----------lf~k~~g~pvIDVT~kSIEEt 363 (387)
..+|-|+.+++.+.+-|..|+..-|. ..+.+.+.+.+.. +. ++... ..-+||++++++||+
T Consensus 154 d~vi~L~a~~e~~~~R~~~~~~~R~~-------~~~~e~~~~~i~~-R~~~~~~~~~~p~~~~~-d~~vId~~~~s~eev 224 (236)
T 1q3t_A 154 ELKIFLVASVDERAERRYKENIAKGI-------ETDLETLKKEIAA-RDYKDSHRETSPLKQAE-DAVYLDTTGLNIQEV 224 (236)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHH-HHHHHTTCSSSCCSCCT-TCEEEECSSCCHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHH-HhhhhhhcccccccccC-CEEEEcCCCCCHHHH
Confidence 45788999998887644344332232 1245666665532 11 33222 347999999999999
Q ss_pred HHHHHHHHhc
Q 016570 364 AAVVLRLYHD 373 (387)
Q Consensus 364 Aa~Il~~~~~ 373 (387)
...|++++..
T Consensus 225 ~~~I~~~l~~ 234 (236)
T 1q3t_A 225 VEKIKAEAEK 234 (236)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 14
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.26 E-value=0.0061 Score=53.31 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=46.2
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhcc
Q 016570 295 KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 295 KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
.+|.|+.+++.|.+ |+..-+ ..+.+.+.++..++..+.++.+. ..-+||++ .++||++..|++.+...
T Consensus 127 ~vv~l~~~~e~l~~----Rl~~R~------~~~~~~~~l~~~~~~~~~~~~~~-~~~~Id~~-~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 127 DFLHLDGPAEVIKG----RMSKRE------GHFMPASLLQSQLATLEALEPDE-SGIVLDLR-QPPEQLIERALTWLDIA 194 (200)
T ss_dssp EEEEEECCHHHHHH----HHTTCS------CCSSCGGGHHHHHHHCCCCCTTS-CEEEEETT-SCHHHHHHHHHHHHCCC
T ss_pred EEEEEeCCHHHHHH----HHHhcc------cCCCCHHHHHHHHHHhCCCCCCC-CeEEEECC-CCHHHHHHHHHHHHHhc
Confidence 67899999877644 553222 22344556655555555566654 57789986 49999999999999754
No 15
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.23 E-value=0.011 Score=50.32 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=43.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hCCCCcEEeCCCccHHHHHHHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFA-QNPVWPVIEVTGKAIEETAAVVLRL 370 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~-k~~g~pvIDVT~kSIEEtAa~Il~~ 370 (387)
.+..+|-|+.+++.+.+--.+| |-+......-.-.+++.+....-...|+ +. .+-+||.++ ++||++..|++.
T Consensus 124 ~~d~vi~L~~~~e~~~~Rl~~R----~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~Id~~~-~~~~v~~~I~~~ 197 (205)
T 2jaq_A 124 SFDIVIYLRVSTKTAISRIKKR----GRSEELLIGEEYWETLNKNYEEFYKQNVYDF-PFFVVDAEL-DVKTQIELIMNK 197 (205)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH----TCHHHHHSCHHHHHHHHHHHHHHHHHHTTTS-CEEEEETTS-CHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHc----CChhhhcCcHHHHHHHHHHHHHHHHHccccC-cEEEEECCC-CHHHHHHHHHHH
Confidence 3557999999998776522233 2110000000111233332222223444 32 578899887 999999999999
Q ss_pred Hhcc
Q 016570 371 YHDR 374 (387)
Q Consensus 371 ~~~r 374 (387)
+...
T Consensus 198 l~~~ 201 (205)
T 2jaq_A 198 LNSI 201 (205)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8654
No 16
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.21 E-value=0.0038 Score=58.41 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=74.8
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeeeccccC-----CCCCCc-------------------cccc------------
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM-----GVELPK-------------------SLFQ------------ 290 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLVp-----~v~lP~-------------------eLf~------------ 290 (387)
=|+|+|.|++|||=++-.||. .|+......-+- +..++. +|..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG 129 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGG 129 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEECCGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEecCCC
Confidence 399999999999999999994 787655432210 111111 0000
Q ss_pred ----------cCCCcEEEEecChhHHHHHHHHH-HhhcCCCCC--CCCCC-CCHHHHHHHHHHHHHHhhhCCCCcE----
Q 016570 291 ----------VDPEKVFGLTINPLVLQSIRKAR-ARSLGFRDE--IRSNY-SEMDYVREELEFAGRIFAQNPVWPV---- 352 (387)
Q Consensus 291 ----------v~~~KI~GLTIdPerL~~IR~eR-lk~lGl~~~--~~S~Y-A~~e~I~~EL~~A~~lf~k~~g~pv---- 352 (387)
.....+|=|+.+++.|.+-...| .+.-++-.. +...+ ...+++++-++.-..+|++. ..-+
T Consensus 130 ~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~a-d~vi~~~~ 208 (250)
T 3nwj_A 130 AVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKA-SARVSLEN 208 (250)
T ss_dssp GGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTTS-SEEEEHHH
T ss_pred eecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhC-CEEEEecc
Confidence 01245788999998887632211 011111100 00000 01466776677777788774 5444
Q ss_pred -------EeCCCccHHHHHHHHHHHHhccc
Q 016570 353 -------IEVTGKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 353 -------IDVT~kSIEEtAa~Il~~~~~r~ 375 (387)
||+|++++||++..|++.+....
T Consensus 209 ~~~~~~~iDTs~~s~eev~~~I~~~i~~~~ 238 (250)
T 3nwj_A 209 ITLKLGYRSVSDLTPAEIAIEAFEQVQSYL 238 (250)
T ss_dssp HHHHHTCSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 49999999999999999997753
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.12 E-value=0.03 Score=47.57 Aligned_cols=117 Identities=11% Similarity=0.182 Sum_probs=69.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecc----------------------------------ccC---------CC--
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVP----------------------------------IVM---------GV-- 282 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~P----------------------------------LVp---------~v-- 282 (387)
|+|.|.++||||=++-.|| ..|+++-+.- ++. +-
T Consensus 12 I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~v 91 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGF 91 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTTCSCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccccCCcE
Confidence 8999999999999999999 5688765320 000 00
Q ss_pred ---CCCccc---------cccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHH-------
Q 016570 283 ---ELPKSL---------FQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS-EMDYVREELEFAGR------- 342 (387)
Q Consensus 283 ---~lP~eL---------f~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA-~~e~I~~EL~~A~~------- 342 (387)
..|..+ + ..+..+|-|+.+++.+.+--..|- .. ...+. +.+.+++.+....+
T Consensus 92 i~d~~~~~~~~~~~~~~~~-~~~~~vi~l~~~~e~~~~R~~~R~----~~---~~~~~~~~~~~~~r~~~~~~~~~~~~~ 163 (196)
T 2c95_A 92 LIDGYPREVQQGEEFERRI-GQPTLLLYVDAGPETMTQRLLKRG----ET---SGRVDDNEETIKKRLETYYKATEPVIA 163 (196)
T ss_dssp EEESCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHH----TS---SSCGGGSHHHHHHHHHHHHHHTHHHHH
T ss_pred EEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHccC----Cc---CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 112221 1 245689999999988766333342 11 11232 23333333332221
Q ss_pred HhhhCCCCcEEeCCCccHHHHHHHHHHHHhcc
Q 016570 343 IFAQNPVWPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 343 lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
.|...-.|-+||.+ .++||++..|++++..+
T Consensus 164 ~~~~~~~~~~Id~~-~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 164 FYEKRGIVRKVNAE-GSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHHTCEEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred HHHhcCcEEEEECC-CCHHHHHHHHHHHHHHh
Confidence 23331025679964 99999999999998754
No 18
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.09 E-value=0.028 Score=49.15 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=45.5
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH------H---HHHhhhCCCCcEEeCCCccHHHH
Q 016570 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF------A---GRIFAQNPVWPVIEVTGKAIEET 363 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~------A---~~lf~k~~g~pvIDVT~kSIEEt 363 (387)
...+|=|+.+++.+.+-|..++..-|.. .+.+.+.+++.. - +.+.... .+-+||.++.++||+
T Consensus 141 ~d~~i~l~~~~e~~~~R~~~~l~~rg~~-------~~~~~~~~~i~~R~~~~~~~~~~pl~~~~-~~~~Id~~~~~~~ev 212 (227)
T 1cke_A 141 APVKIFLDASSEERAHRRMLQLQVKGFS-------VNFERLLAEIKERDDRDRNRAVAPLVPAA-DALVLDSTTLSIEQV 212 (227)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHTCC-------CCHHHHHHHHC-------------CCCCT-TCEEEETTTSCHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCcc-------CCHHHHHHHHHHHHHhhhhhcccCccCCC-CEEEEeCCCCCHHHH
Confidence 4567889999987766544444333431 234455555431 1 2222221 347899998999999
Q ss_pred HHHHHHHHhcc
Q 016570 364 AAVVLRLYHDR 374 (387)
Q Consensus 364 Aa~Il~~~~~r 374 (387)
...|++.+..+
T Consensus 213 ~~~I~~~l~~~ 223 (227)
T 1cke_A 213 IEKALQYARQK 223 (227)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998654
No 19
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.06 E-value=0.0064 Score=51.05 Aligned_cols=43 Identities=5% Similarity=0.082 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016570 330 MDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 330 ~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
.+.++.-+.....+|++. ..-+||+++.++||++..|++.+..
T Consensus 130 ~~~~~~~~~~r~~~~~~~-a~~~id~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 130 REVLEALANERNPLYEEI-ADVTIRTDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp HHHHHHHHHHHHHHHHHH-CSEEC-----CHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhh-CCEEEECCCCCHHHHHHHHHHHHHh
Confidence 455555444444667664 5789999999999999999998753
No 20
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.01 E-value=0.062 Score=46.53 Aligned_cols=125 Identities=18% Similarity=0.274 Sum_probs=70.9
Q ss_pred CCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCceeeec------------c-------------ccCC-------
Q 016570 235 QDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYKVANV------------P-------------IVMG------- 281 (387)
Q Consensus 235 hDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~-~GyKVAN~------------P-------------LVp~------- 281 (387)
||-|........-=|+|.|.++||||=++-.||. .|+.+-+. + +++.
T Consensus 9 ~~~~~~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~ 88 (201)
T 2cdn_A 9 HHSSGLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELV 88 (201)
T ss_dssp -------CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cccccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHH
Confidence 3444333333333499999999999999999994 68877654 1 1110
Q ss_pred ---CC------------CCcc----------ccc--cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHH
Q 016570 282 ---VE------------LPKS----------LFQ--VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVR 334 (387)
Q Consensus 282 ---v~------------lP~e----------Lf~--v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~ 334 (387)
+. .|.. |.+ ..+..+|-|+++++.+.+ |+..-|-. . .+.+.++
T Consensus 89 ~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~----Rl~~R~r~---~---~~~e~~~ 158 (201)
T 2cdn_A 89 DDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE----RLKGRGRA---D---DTDDVIL 158 (201)
T ss_dssp HHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHH----HHHHHCCT---T---CSHHHHH
T ss_pred HHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHH----HHHcCCCC---C---CCHHHHH
Confidence 00 1211 111 124579999999987654 33322311 1 1344454
Q ss_pred HHHHHHH-------HHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016570 335 EELEFAG-------RIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 372 (387)
Q Consensus 335 ~EL~~A~-------~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~ 372 (387)
+-++... +.| .. .+-+||. +.++||++..|++.+.
T Consensus 159 ~r~~~~~~~~~~~~~~~-~~-~~~~Id~-~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 159 NRMKVYRDETAPLLEYY-RD-QLKTVDA-VGTMDEVFARALRALG 200 (201)
T ss_dssp HHHHHHHHHTTTHHHHT-TT-TEEEEEC-CSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHh-cC-cEEEEeC-CCCHHHHHHHHHHHHc
Confidence 4443322 123 32 4778997 5899999999998874
No 21
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.94 E-value=0.03 Score=47.09 Aligned_cols=118 Identities=15% Similarity=0.183 Sum_probs=69.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec-------c-----cc--------CCCCCCcc--------------------
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANV-------P-----IV--------MGVELPKS-------------------- 287 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~-------P-----LV--------p~v~lP~e-------------------- 287 (387)
|+|.|.++||||=++-.||+ .|+.+-+. | +- .+...|.+
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~vi~ 88 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLV 88 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 89999999999999999995 58877654 1 00 01111110
Q ss_pred -----------cc----c--cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-------HHH
Q 016570 288 -----------LF----Q--VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-------GRI 343 (387)
Q Consensus 288 -----------Lf----~--v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A-------~~l 343 (387)
.+ + ..+..+|-|+.+++.+.+--..|-...+- .. .+.+.+++.+... .+.
T Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r-----~~-~~~~~~~~ri~~~~~~~~~~~~~ 162 (194)
T 1qf9_A 89 DGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGR-----SD-DNIESIKKRFNTFNVQTKLVIDH 162 (194)
T ss_dssp ETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCC-----TT-CSHHHHHHHHHHHHHTHHHHHHH
T ss_pred eCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCC-----CC-CCHHHHHHHHHHHHHhHHHHHHH
Confidence 01 1 02345889999998876633344211111 11 1234444433321 234
Q ss_pred hhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016570 344 FAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 344 f~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
|...-.|-+||.+ .++||++..|.+.+.+
T Consensus 163 ~~~~~~~~~id~~-~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 163 YNKFDKVKIIPAN-RDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHTTCEEEEECS-SCHHHHHHHHHHHHHH
T ss_pred HHhCCCEEEEECC-CCHHHHHHHHHHHHHH
Confidence 4443125789987 8999999999998865
No 22
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.92 E-value=0.017 Score=48.84 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=40.4
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-hhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016570 295 KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRI-FAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 295 KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~l-f~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
.+|-|+.+++.+.+ |+..-+ ..+.+.+.+...+..-+.+ +.+. ..-+||++ .++||++..|++.+..
T Consensus 106 ~vv~l~~~~e~~~~----R~~~R~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~-~~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 106 SFIYLKGDFDVIES----RLKARK------GHFFKTQMLVTQFETLQEPGADET-DVLVVDID-QPLEGVVASTIEVIKK 173 (175)
T ss_dssp EEEEEECCHHHHHH----HHHTST------TCCCCHHHHHHHHHHCCCCCTTCT-TEEEEECS-SCHHHHHHHHHHHHHC
T ss_pred EEEEEECCHHHHHH----HHHhcc------CCCCchHHHHHHHHhhhCcccCCC-CeEEEeCC-CCHHHHHHHHHHHHhc
Confidence 68888888876643 543222 1233344444333222223 3332 46789977 8999999999998854
No 23
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.87 E-value=0.0086 Score=50.55 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhhh-cC-----ceeee
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KG-----YKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~G-----yKVAN 275 (387)
|+|.|+++||||=++-.||. .| +.+-+
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 89999999999999999994 56 66544
No 24
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.79 E-value=0.039 Score=49.39 Aligned_cols=29 Identities=21% Similarity=0.079 Sum_probs=25.0
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
=|+|+|.++||||=++-.|| .+|+.+-..
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 39999999999999999999 578877554
No 25
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.54 E-value=0.026 Score=47.40 Aligned_cols=116 Identities=18% Similarity=0.264 Sum_probs=66.8
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeeec----------cc---cC--CC---------------CCCcc-ccc-----
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-KGYKVANV----------PI---VM--GV---------------ELPKS-LFQ----- 290 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~GyKVAN~----------PL---Vp--~v---------------~lP~e-Lf~----- 290 (387)
-|+|.|.++||||=++-.||. .|+++-.. ++ +. +- ..... +..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g~g~ 88 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGGI 88 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECCGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECCCCE
Confidence 389999999999999999995 68876331 10 00 00 00000 100
Q ss_pred ------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHH
Q 016570 291 ------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETA 364 (387)
Q Consensus 291 ------v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtA 364 (387)
.....+|=|+.+++.+.+ |+..-+... ...+.+.+.+++-+..-...|.+. ..-+||+++ ++||++
T Consensus 89 ~~~~~l~~~~~vi~l~~~~e~~~~----Rl~~r~~~~--r~~~~~~~~~~~~~~~r~~~~~~~-a~~~Id~~~-~~e~~~ 160 (168)
T 1zuh_A 89 VMHENLKGLGTTFYLKMDFETLIK----RLNQKEREK--RPLLNNLTQAKELFEKRQALYEKN-ASFIIDARG-GLNNSL 160 (168)
T ss_dssp GGCGGGTTSEEEEEEECCHHHHHH----HHCC----------CCTTHHHHHHHHHHHHHHHHT-CSEEEEGGG-CHHHHH
T ss_pred echhHHhcCCEEEEEECCHHHHHH----HHhccCCCC--CCCccCHHHHHHHHHHHHHHHHHH-CCEEEECCC-CHHHHH
Confidence 123468889999987654 432110000 011112445544444334456664 578999998 999999
Q ss_pred HHHHHHH
Q 016570 365 AVVLRLY 371 (387)
Q Consensus 365 a~Il~~~ 371 (387)
..|++.+
T Consensus 161 ~~I~~~l 167 (168)
T 1zuh_A 161 KQVLQFI 167 (168)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9998765
No 26
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.44 E-value=0.044 Score=46.70 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN 275 (387)
|+|.|.++||||=++-+||+ .|+.+-+
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 89999999999999999995 5887654
No 27
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.42 E-value=0.13 Score=43.33 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVA 274 (387)
|+|.|.++||||=++-.|| ..|+.+-
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 8899999999999999999 5687765
No 28
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.33 E-value=0.015 Score=49.47 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=68.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCCc----------------------------------ccc
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELPK----------------------------------SLF 289 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLVp----~v~lP~----------------------------------eLf 289 (387)
|+|.|.++||||=++-.||. .|+.+-+.=.+- +.+++. .++
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~~~v~ 84 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVT 84 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCCcEEc
Confidence 89999999999999999995 587654321110 111000 000
Q ss_pred c------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CHHHHHHHH-HHHHHHhhhCCCCcEEeCCCccH
Q 016570 290 Q------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EMDYVREEL-EFAGRIFAQNPVWPVIEVTGKAI 360 (387)
Q Consensus 290 ~------v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA--~~e~I~~EL-~~A~~lf~k~~g~pvIDVT~kSI 360 (387)
+ .....+|-|+.+++.+ .+|+..-+- ...+. +.+...+++ ......|.+. ..-+||+++.++
T Consensus 85 ~~~~~~~l~~~~vV~L~~~~e~~----~~Rl~~r~~----r~~~~~~~~~~~i~~~~~~r~~~~~~~-~~~~Idt~~~s~ 155 (184)
T 2iyv_A 85 SPGVRAALAGHTVVYLEISAAEG----VRRTGGNTV----RPLLAGPDRAEKYRALMAKRAPLYRRV-ATMRVDTNRRNP 155 (184)
T ss_dssp SHHHHHHHTTSCEEEEECCHHHH----HHHTTCCCC----CSSTTSCCHHHHHHHHHHHHHHHHHHH-CSEEEECSSSCH
T ss_pred CHHHHHHHcCCeEEEEeCCHHHH----HHHHhCCCC----CCCccCCCHHHHHHHHHHHHHHHHhcc-CCEEEECCCCCH
Confidence 0 0024677888887654 456533221 11122 223333333 2224456554 578999999999
Q ss_pred HHHHHHHHHHHhcc
Q 016570 361 EETAAVVLRLYHDR 374 (387)
Q Consensus 361 EEtAa~Il~~~~~r 374 (387)
||++..|++.+..+
T Consensus 156 ee~~~~I~~~l~~~ 169 (184)
T 2iyv_A 156 GAVVRHILSRLQVP 169 (184)
T ss_dssp HHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999888654
No 29
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.32 E-value=0.037 Score=47.75 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=24.4
Q ss_pred EEEEccCCCCCChhhHHhhhc--Cceeee
Q 016570 249 IILSGVSRTGKTPLSIYLAQK--GYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~--GyKVAN 275 (387)
|+|+|.++||||=++-+||.+ |+.+-+
T Consensus 13 I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 999999999999999999966 987765
No 30
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.28 E-value=0.21 Score=42.99 Aligned_cols=74 Identities=8% Similarity=0.102 Sum_probs=43.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH----H---HHhhhCCCCcEEeCCCccHHHHHH
Q 016570 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA----G---RIFAQNPVWPVIEVTGKAIEETAA 365 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A----~---~lf~k~~g~pvIDVT~kSIEEtAa 365 (387)
+..+|-|+.+++.+.+-...|-..-|.. -.+.+.+++-+... . +.|+..-.|-+||.+ .++||+..
T Consensus 121 ~~~~i~l~~~~e~~~~Rl~~R~~~~~~~------~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~-~~~e~v~~ 193 (203)
T 1ukz_A 121 SKFILFFDCPEDIMLERLLERGKTSGRS------DDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCD-RSVEDVYK 193 (203)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHCCT------TCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECS-SCHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHhccccCCCC------CCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECC-CCHHHHHH
Confidence 4678999999987766444453222221 12344444433221 1 123332123457877 99999999
Q ss_pred HHHHHHhc
Q 016570 366 VVLRLYHD 373 (387)
Q Consensus 366 ~Il~~~~~ 373 (387)
.|.+.+..
T Consensus 194 ~i~~~l~~ 201 (203)
T 1ukz_A 194 DVQDAIRD 201 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998864
No 31
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.20 E-value=0.1 Score=44.13 Aligned_cols=117 Identities=20% Similarity=0.158 Sum_probs=67.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec--------c----c-------c-CCCCCCcc--------------------
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV--------P----I-------V-MGVELPKS-------------------- 287 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~--------P----L-------V-p~v~lP~e-------------------- 287 (387)
|+|+|.++||||=++-.|| ..|+.+-+. | + + .+...|.+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~i~dg~~ 86 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAERVIFDGFP 86 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSEEEEESCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcCCEEEeCCC
Confidence 8999999999999999999 568876543 1 0 0 01122211
Q ss_pred ------------ccc--cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-------HHHhhh
Q 016570 288 ------------LFQ--VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-------GRIFAQ 346 (387)
Q Consensus 288 ------------Lf~--v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A-------~~lf~k 346 (387)
|.+ ..+..+|-|+++++.+.+--..|-..-|-. . .+.+.+++-+... .+.|.+
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~---~---~~~~~~~~r~~~~~~~~~~l~~~~~~ 160 (186)
T 3cm0_A 87 RTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRS---D---DNEETVRRRLEVYREKTEPLVGYYEA 160 (186)
T ss_dssp CSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCS---S---CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCC---C---CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 100 013578999999988765323342111211 1 1233333222211 234444
Q ss_pred CCCCcEEeCCCccHHHHHHHHHHHHh
Q 016570 347 NPVWPVIEVTGKAIEETAAVVLRLYH 372 (387)
Q Consensus 347 ~~g~pvIDVT~kSIEEtAa~Il~~~~ 372 (387)
.-.+-+||. ++++||++..|++.+.
T Consensus 161 ~~~~~~id~-~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 161 RGVLKRVDG-LGTPDEVYARIRAALG 185 (186)
T ss_dssp TTCEEEEEC-CSCHHHHHHHHHHHHT
T ss_pred cCcEEEEEC-CCCHHHHHHHHHHHhc
Confidence 212778996 4899999999998763
No 32
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.19 E-value=0.047 Score=47.88 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN 275 (387)
|+|.|.++||||=++-.||..|+.+-+
T Consensus 7 I~i~G~~GSGKST~~~~L~~lg~~~id 33 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFADLGINVID 33 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHcCCEEEE
Confidence 889999999999999999998887654
No 33
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.10 E-value=0.024 Score=49.44 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.8
Q ss_pred CCcEEeCCC-ccHHHHHHHHHHHHhcc
Q 016570 349 VWPVIEVTG-KAIEETAAVVLRLYHDR 374 (387)
Q Consensus 349 g~pvIDVT~-kSIEEtAa~Il~~~~~r 374 (387)
..-+||+++ +++||+++.|++.+..+
T Consensus 169 ~~~~idt~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 169 CEISLGREGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp CSEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 356999999 89999999999999764
No 34
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.00 E-value=0.07 Score=45.72 Aligned_cols=26 Identities=19% Similarity=0.516 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhhhc--Cceee
Q 016570 249 IILSGVSRTGKTPLSIYLAQK--GYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~--GyKVA 274 (387)
|+|.|.++||||=++=.||++ |+++-
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~ 34 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTIK 34 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCceE
Confidence 899999999999999999965 77654
No 35
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.98 E-value=0.085 Score=43.98 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=65.2
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeecccc----CCCCC--------------------------------------C
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIV----MGVEL--------------------------------------P 285 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLV----p~v~l--------------------------------------P 285 (387)
|+|.|.++||||=++-.||+ .|+.+-+.--+ .+.++ .
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vi~~g~~~~~~ 84 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVATPNRVVATGGGMVLL 84 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEECCTTGGGS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhhcCCeEEECCCcEEeC
Confidence 89999999999999999995 58766431100 01000 0
Q ss_pred cccccc--CCCcEEEEecChhHHHHHHHHHHh--hcCCCCCCCCCCCCHHHHHHHHH----HHHHHhhhCCCCcEEeCCC
Q 016570 286 KSLFQV--DPEKVFGLTINPLVLQSIRKARAR--SLGFRDEIRSNYSEMDYVREELE----FAGRIFAQNPVWPVIEVTG 357 (387)
Q Consensus 286 ~eLf~v--~~~KI~GLTIdPerL~~IR~eRlk--~lGl~~~~~S~YA~~e~I~~EL~----~A~~lf~k~~g~pvIDVT~ 357 (387)
+...+. ....+|-|+.+++.+.+ |+. .-+-. ...+. .+...+++. .....+.+ ..-+||+++
T Consensus 85 ~~~~~~l~~~~~~i~l~~~~e~~~~----R~~~~~r~~~---r~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~Id~~~ 154 (173)
T 1e6c_A 85 EQNRQFMRAHGTVVYLFAPAEELAL----RLQASLQAHQ---RPTLT-GRPIAEEMEAVLREREALYQD--VAHYVVDAT 154 (173)
T ss_dssp HHHHHHHHHHSEEEEEECCHHHHHH----HHHHHHCSCC---CCCTT-HHHHHHHHHHHHHHHHHHHHH--HCSEEEETT
T ss_pred HHHHHHHHcCCeEEEEECCHHHHHH----HHhhccCCCC---CCcCC-CCCHHHHHHHHHHHHHHHHHh--CcEEEECCC
Confidence 000000 12467888888876654 332 11101 11122 122222222 12233444 256999999
Q ss_pred ccHHHHHHHHHHHHhc
Q 016570 358 KAIEETAAVVLRLYHD 373 (387)
Q Consensus 358 kSIEEtAa~Il~~~~~ 373 (387)
.++||++..|++.+..
T Consensus 155 ~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 155 QPPAAIVCELMQTMRL 170 (173)
T ss_dssp SCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999998864
No 36
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.94 E-value=0.12 Score=45.01 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
|+|.|.++||||=++-+|| .+|+.+-+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 8999999999999999998 568766543
No 37
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.86 E-value=0.08 Score=45.61 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=39.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh-C-CCCcEEeCCCccHHHHHHHHHHH
Q 016570 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQ-N-PVWPVIEVTGKAIEETAAVVLRL 370 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k-~-~g~pvIDVT~kSIEEtAa~Il~~ 370 (387)
+..+|-|+++++.+.+ |++ -+ ...|.+ +...+.+..+..-+.+ . -.|-+||. +.++||++..|++.
T Consensus 130 ~d~vi~l~~~~e~~~~----Rl~-r~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Id~-~~~~e~~~~~i~~~ 197 (215)
T 1nn5_A 130 PDLVLFLQLQLADAAK----RGA-FG-----HERYEN-GAFQERALRCFHQLMKDTTLNWKMVDA-SKSIEAVHEDIRVL 197 (215)
T ss_dssp CSEEEEEECCHHHHHH----C-----------CTTCS-HHHHHHHHHHHHHHTTCTTSCEEEEET-TSCHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHH----Hhc-cC-----ccccch-HHHHHHHHHHHHHHHHhCCCCEEEEEC-CCCHHHHHHHHHHH
Confidence 4568888888885543 331 11 012333 2333334333222222 1 14689994 68999999999998
Q ss_pred Hhcc
Q 016570 371 YHDR 374 (387)
Q Consensus 371 ~~~r 374 (387)
+...
T Consensus 198 l~~~ 201 (215)
T 1nn5_A 198 SEDA 201 (215)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 38
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.85 E-value=0.13 Score=44.54 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.4
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
|.|+|.++||||=++=.||..|+.+-
T Consensus 5 i~l~G~~GsGKST~~~~La~lg~~~i 30 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTDLGVPLV 30 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCccc
Confidence 78999999999999999999887653
No 39
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.82 E-value=0.12 Score=45.74 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
|+|+|.++||||=++-.|| ..|+.+-..
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 8999999999999999999 468877643
No 40
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.78 E-value=0.18 Score=42.30 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|+|.|+++||||=++-.||+
T Consensus 4 I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999983
No 41
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.76 E-value=0.23 Score=41.77 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=40.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-HHHhhh-CCCCcEEeCCCccHHHHHHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-GRIFAQ-NPVWPVIEVTGKAIEETAAVVLR 369 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A-~~lf~k-~~g~pvIDVT~kSIEEtAa~Il~ 369 (387)
.+..+|-|+.+++.+. +|+..-+ .+. .+.+.+.+... ++.... . .|-+||. +.++||+...|.+
T Consensus 122 ~~d~vi~l~~~~e~~~----~Rl~~r~-------~~~-~~~~~~~~~~~~~~~~~~~~-~~~~Id~-~~~~~~~~~~i~~ 187 (195)
T 2pbr_A 122 KPDITLLLDIPVDIAL----RRLKEKN-------RFE-NKEFLEKVRKGFLELAKEEE-NVVVIDA-SGEEEEVFKEILR 187 (195)
T ss_dssp CCSEEEEEECCHHHHH----HHHHTTT-------CCC-CHHHHHHHHHHHHHHHHHST-TEEEEET-TSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHH----HHhhccC-------ccc-hHHHHHHHHHHHHHHHhhCC-CEEEEEC-CCCHHHHHHHHHH
Confidence 3567899999997654 3443111 122 22333333221 112211 2 4789997 6899999999999
Q ss_pred HHhc
Q 016570 370 LYHD 373 (387)
Q Consensus 370 ~~~~ 373 (387)
.+.+
T Consensus 188 ~l~~ 191 (195)
T 2pbr_A 188 ALSG 191 (195)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8865
No 42
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.71 E-value=0.082 Score=45.64 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN 275 (387)
|+|+|.++||||=++=+||..|+++.+
T Consensus 4 i~i~G~~GsGKSTl~~~L~~~g~~~i~ 30 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRELGAYVLD 30 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCcCHHHHHHHHHHCCCEEEE
Confidence 789999999999999999988877643
No 43
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.51 E-value=0.1 Score=45.49 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
|+|.|.++||||=++-+|| .+|+.+-+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 8999999999999999998 578766544
No 44
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.47 E-value=0.15 Score=46.31 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVA 274 (387)
|+|.|.++||||=++-.|+ .+|+.+-
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 9999999999999999999 4687654
No 45
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.43 E-value=0.081 Score=46.61 Aligned_cols=27 Identities=15% Similarity=0.269 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN 275 (387)
|+|+|+++||||=++-.|| ..|+..-+
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 8999999999999999999 55765443
No 46
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.40 E-value=0.25 Score=45.84 Aligned_cols=72 Identities=14% Similarity=0.073 Sum_probs=43.6
Q ss_pred EEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh-C-------CCCcEEeCCCccHHHHHHHHH
Q 016570 297 FGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQ-N-------PVWPVIEVTGKAIEETAAVVL 368 (387)
Q Consensus 297 ~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k-~-------~g~pvIDVT~kSIEEtAa~Il 368 (387)
|=||.+++.=.+-|-+++...|. -.+.+.+.+++..=.+.=.. . -+.-+||+|+.++||+...|+
T Consensus 150 ifl~A~~e~Ra~Rr~~~l~~~~~-------~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~ 222 (233)
T 3r20_A 150 IFLTASAEERARRRNAQNVANGL-------PDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLL 222 (233)
T ss_dssp EEEECCHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHH
Confidence 45777776544444444433343 14677777777654433221 1 012789999999999999999
Q ss_pred HHHhccc
Q 016570 369 RLYHDRK 375 (387)
Q Consensus 369 ~~~~~r~ 375 (387)
++++++.
T Consensus 223 ~~i~~~~ 229 (233)
T 3r20_A 223 DLVTAQA 229 (233)
T ss_dssp HHC----
T ss_pred HHHHHhh
Confidence 9997653
No 47
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.98 E-value=0.55 Score=40.68 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=21.1
Q ss_pred EEEEccCCCCCChhhHHhhhc--Ccee
Q 016570 249 IILSGVSRTGKTPLSIYLAQK--GYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~--GyKV 273 (387)
|.|+|.|++|||=++-.|+.+ |+.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 679999999999999999964 5543
No 48
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.84 E-value=0.5 Score=40.34 Aligned_cols=21 Identities=38% Similarity=0.426 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016570 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+|+|.|++|||=|+-.|+..
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 789999999999999999843
No 49
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.75 E-value=0.39 Score=44.80 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN 275 (387)
|+|.|.++||||=++=+||..|+.+-+
T Consensus 78 I~I~G~~GSGKSTva~~La~lg~~~id 104 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKNLGAYIID 104 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCcEEe
Confidence 899999999999999999988987654
No 50
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.26 E-value=0.28 Score=44.47 Aligned_cols=76 Identities=8% Similarity=0.029 Sum_probs=42.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-HHHHHHHHHHH-HHHhhhCC-CCcEEeCCCccHHHHHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-MDYVREELEFA-GRIFAQNP-VWPVIEVTGKAIEETAAVVL 368 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~-~e~I~~EL~~A-~~lf~k~~-g~pvIDVT~kSIEEtAa~Il 368 (387)
.+..+|=|+++|+.+.+--..| |-. ...|-+ .....+.+..+ +++..+.. .|-+||. ++++||+...|+
T Consensus 148 ~pd~vi~L~~~~e~~~~R~~~R----~~~---~dr~e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa-~~s~eev~~~I~ 219 (229)
T 4eaq_A 148 YPDLTIYLNVSAEVGRERIIKN----SRD---QNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNA-DQPLENVVEDTY 219 (229)
T ss_dssp CCSEEEEEECCHHHHHHHHHHC------------CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEET-TSCHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhc----CCC---ccchhhhhHHHHHHHHHHHHHHHHhCCCCEEEEeC-CCCHHHHHHHHH
Confidence 3566888999998775532233 211 122321 22233333322 23333321 4789996 579999999999
Q ss_pred HHHhccc
Q 016570 369 RLYHDRK 375 (387)
Q Consensus 369 ~~~~~r~ 375 (387)
+.+....
T Consensus 220 ~~l~~~l 226 (229)
T 4eaq_A 220 QTIIKYL 226 (229)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987643
No 51
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.59 E-value=0.37 Score=42.20 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=24.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~ 276 (387)
|+|.|.++||||=++-.||+ +|+.+-+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 89999999999999999994 79877665
No 52
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.09 E-value=0.43 Score=43.60 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=23.4
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016570 249 IILSGVSRTGKTPLSIYLAQ----KGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyKVA 274 (387)
|+|.|.++||||=++-.||. .|+.+.
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 89999999999999999995 688765
No 53
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=92.08 E-value=0.056 Score=52.36 Aligned_cols=27 Identities=41% Similarity=0.653 Sum_probs=22.5
Q ss_pred CcEEEEc---cCCCCCChhhHHhhh--cCcee
Q 016570 247 ADIILSG---VSRTGKTPLSIYLAQ--KGYKV 273 (387)
Q Consensus 247 ADIVLvG---VSRTsKTPlSmYLA~--~GyKV 273 (387)
.=||.|| |=+|||||+++|||+ +++++
T Consensus 36 vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~~ 67 (315)
T 4ehx_A 36 VPVISVGNLSVGGSGKTSFVMYLADLLKDKRV 67 (315)
T ss_dssp SCEEEEEESBSSCCSHHHHHHHHHHHTTTSCE
T ss_pred CCEEEECCEEeCCCChHHHHHHHHHHHhhcCc
Confidence 4589999 999999999999995 45554
No 54
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.00 E-value=0.53 Score=41.82 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=43.7
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHH-HHHHHHhhhCC-CCcEEeCCCccHHHHHHHHHHH
Q 016570 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREEL-EFAGRIFAQNP-VWPVIEVTGKAIEETAAVVLRL 370 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL-~~A~~lf~k~~-g~pvIDVT~kSIEEtAa~Il~~ 370 (387)
|..+|=|+++|+...+ |.. ....|-+.+- .+-+ +.-.++.++++ .|-+||-+ ++|||+.+.|++.
T Consensus 122 PDl~i~Ld~~~e~~~~----R~~-------~~dr~e~~ef-~~rv~~~y~~la~~~~~~~~~IDa~-~~~eeV~~~I~~~ 188 (197)
T 3hjn_A 122 PDLTFYIDVDVETALK----RKG-------ELNRFEKREF-LERVREGYLVLAREHPERIVVLDGK-RSIEEIHRDVVRE 188 (197)
T ss_dssp CSEEEEEECCHHHHHH----HC----------CTTCCHHH-HHHHHHHHHHHHHHCTTTEEEEETT-SCHHHHHHHHHHH
T ss_pred CCceeecCcChHHHHH----hCc-------CcCccccHHH-HHHHHHHHHHHHHhCCCCEEEEcCC-CCHHHHHHHHHHH
Confidence 5668889999998765 321 1124555432 1122 12234555542 48899954 8999999999999
Q ss_pred Hhcc
Q 016570 371 YHDR 374 (387)
Q Consensus 371 ~~~r 374 (387)
+++|
T Consensus 189 i~~r 192 (197)
T 3hjn_A 189 VKRR 192 (197)
T ss_dssp HSCC
T ss_pred HHHH
Confidence 9775
No 55
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.89 E-value=0.59 Score=42.38 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=48.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcC--C-CCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLG--F-RDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVL 368 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lG--l-~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il 368 (387)
..+|++=|+||++-+.++|+.-...+- + +.+-...-.+.+++.+.++.++.-|......-|+|- .+|++.+.+.
T Consensus 108 ~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~~~~e~~~~i~~r~~~~~~~~~~~fd~vivNd---~l~~a~~~l~ 184 (197)
T 3ney_A 108 KQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNN---GVDETLKKLQ 184 (197)
T ss_dssp HTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBSSCCHHHHHHHHHHHHHHHHHGGGCSEEEEES---CHHHHHHHHH
T ss_pred hcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCccccchHHHHHHHHHHHHHHhhccCCCEEEECC---CHHHHHHHHH
Confidence 468899999999999988753221110 0 110111112346777777666543433335566654 5999999999
Q ss_pred HHHhcc
Q 016570 369 RLYHDR 374 (387)
Q Consensus 369 ~~~~~r 374 (387)
.++..-
T Consensus 185 ~ii~~~ 190 (197)
T 3ney_A 185 EAFDQA 190 (197)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 998653
No 56
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.56 E-value=0.19 Score=43.31 Aligned_cols=19 Identities=47% Similarity=0.551 Sum_probs=17.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
++|+|+|++|||=|.=.|+
T Consensus 4 i~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEESSSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999988887
No 57
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.69 E-value=1 Score=44.49 Aligned_cols=124 Identities=19% Similarity=0.315 Sum_probs=71.9
Q ss_pred HHHHHHHHHhCC-CEEEEEcCC---------HHHHHHHHHHHHHcCCCEeecc-h-----------HHHHHHHHHhC---
Q 016570 147 LMVIIKQAAKDG-AMLVYTLAD---------PSMAESAKKACELWGIPSTDVL-G-----------PITEAIASHLG--- 201 (387)
Q Consensus 147 l~~ii~~a~~~~-~iV~~Tlvd---------~elr~~l~~~~~~~gi~~vDll-g-----------p~i~~le~~lG--- 201 (387)
+.++|+.+++.| .+++.|=-. ..+++.+....+..|++ +|++ + -++..+.+.+|
T Consensus 92 v~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~~lgl~-fd~i~~~~~~~~~KP~p~~~~~a~~~l~~~~ 170 (416)
T 3zvl_A 92 IPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVP-FQVLVATHAGLNRKPVSGMWDHLQEQANEGI 170 (416)
T ss_dssp HHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHHHHTSC-CEEEEECSSSTTSTTSSHHHHHHHHHSSTTC
T ss_pred HHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCCCHHHHHHHHHHhCCCC
Confidence 355677766666 466666532 45566677888888886 4533 1 23445555666
Q ss_pred -CCCCCCC--CCCC--------------------------CCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCc------
Q 016570 202 -VSPSGLP--RGAP--------------------------GRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQK------ 246 (387)
Q Consensus 202 -~~p~~~~--~~~p--------------------------G~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~------ 246 (387)
+.|.... +-.. |+....-++||---.+.+|.+. +-+|..+..
T Consensus 171 ~v~~~~~l~VGDs~gr~~~~~~~~~~~d~s~~Di~~A~~aGi~f~~pe~~f~~~~~~~~~~~---~f~p~~~~~~~~~~~ 247 (416)
T 3zvl_A 171 PISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELP---AFDPRTISSAGPLYL 247 (416)
T ss_dssp CCCGGGCEEECSCSCBCTTSSTTCCSCCSCCHHHHHHHHHTCCEECHHHHHSCCCCCCBCCC---SCCGGGCCSCSCSSB
T ss_pred CCCHHHeEEEECCCCCcccccccccccCCChhhHHHHHHcCCcccCcHHhhCCCCcCccccC---CCChhhhcccccccC
Confidence 7763210 0111 1222233678877666666642 222222221
Q ss_pred -----------CcEEEEccCCCCCChhhHHhh-hcCceee
Q 016570 247 -----------ADIILSGVSRTGKTPLSIYLA-QKGYKVA 274 (387)
Q Consensus 247 -----------ADIVLvGVSRTsKTPlSmYLA-~~GyKVA 274 (387)
-=|||+|+|+||||=++--|+ ..||.+.
T Consensus 248 p~~~~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 248 PESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp STTSCSCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCccccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 117889999999999999998 4565443
No 58
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.80 E-value=1.7 Score=39.06 Aligned_cols=120 Identities=20% Similarity=0.326 Sum_probs=70.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec-------------------------cccCC-------------------CC
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV-------------------------PIVMG-------------------VE 283 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~-------------------------PLVp~-------------------v~ 283 (387)
|||+|..++||+-.|-.|| .+|+..-.. =|||+ -.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ilDG 82 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIFDG 82 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEecC
Confidence 7999999999999999999 567653221 02220 01
Q ss_pred CCccccc------------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCC------------------CCHHHH
Q 016570 284 LPKSLFQ------------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNY------------------SEMDYV 333 (387)
Q Consensus 284 lP~eLf~------------v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~Y------------------A~~e~I 333 (387)
.|..+-| .....++=|.++.+.|.+ |+..-......+..| -+.|.|
T Consensus 83 fPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~----Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i 158 (206)
T 3sr0_A 83 FPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIE----RLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVI 158 (206)
T ss_dssp CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHH----HHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHH
T ss_pred CchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHH----HHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHH
Confidence 3433221 245678999999998876 332222111111111 123445
Q ss_pred HHHHHH-------HHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016570 334 REELEF-------AGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 334 ~~EL~~-------A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
+.=|+. ..+.|++.-.+..||.+ .++||+.+.|++.+.+
T Consensus 159 ~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~-~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 159 KKRLEVYREQTAPLIEYYKKKGILRIIDAS-KPVEEVYRQVLEVIGD 204 (206)
T ss_dssp HHHHHHHHHHTTHHHHHHHTTTCEEEEETT-SCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHHcc
Confidence 444432 33456664235678865 5999999999999864
No 59
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.37 E-value=5.3 Score=35.57 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=65.1
Q ss_pred EEEEccCCCCCChhhHHhh-hc--CceeeeccccCCCCCCcc--------------------------------------
Q 016570 249 IILSGVSRTGKTPLSIYLA-QK--GYKVANVPIVMGVELPKS-------------------------------------- 287 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~--GyKVAN~PLVp~v~lP~e-------------------------------------- 287 (387)
|||+|+|++|||-|.=+|. +. ++.. -++-+-.-+=|.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~-svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGF-SVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEE-CCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEE-EEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 8999999999999999987 33 2322 2333321111111
Q ss_pred --cc-ccCCCcEEEEecChhHHHHHHH--------------------HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 016570 288 --LF-QVDPEKVFGLTINPLVLQSIRK--------------------ARARSLGFRDEIRSNYSEMDYVREELEFAGRIF 344 (387)
Q Consensus 288 --Lf-~v~~~KI~GLTIdPerL~~IR~--------------------eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf 344 (387)
+. ....++.+=|+||++-+.++|+ +||+.-|. -+.+.|+.=|..|+.=+
T Consensus 83 ~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~--------e~~e~i~~Rl~~a~~e~ 154 (186)
T 1ex7_A 83 ASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT--------ETEESINKRLSAAQAEL 154 (186)
T ss_dssp HHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC--------SCHHHHHHHHHHHHHHH
T ss_pred ceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHH
Confidence 10 0123567777777777666653 35554443 23466766666666544
Q ss_pred hhC----CCCcEEeCCCccHHHHHHHHHHHHh
Q 016570 345 AQN----PVWPVIEVTGKAIEETAAVVLRLYH 372 (387)
Q Consensus 345 ~k~----~g~pvIDVT~kSIEEtAa~Il~~~~ 372 (387)
... ...-|+ |-.+|++...|.+++.
T Consensus 155 ~~~~~~~fD~vIv---Nddle~a~~~l~~iI~ 183 (186)
T 1ex7_A 155 AYAETGAHDKVIV---NDDLDKAYKELKDFIF 183 (186)
T ss_dssp HHHTTTCSSEEEE---CSSHHHHHHHHHHHHT
T ss_pred hhccccCCcEEEE---CcCHHHHHHHHHHHHH
Confidence 321 122334 4579999999999884
No 60
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.84 E-value=0.36 Score=44.76 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN 275 (387)
|+|+|.|++|||=|++-||++|+.+.|
T Consensus 37 ilI~GpsGsGKStLA~~La~~g~~iIs 63 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRGHRLIA 63 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCeEEe
Confidence 899999999999999999999976554
No 61
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=86.71 E-value=1.2 Score=39.59 Aligned_cols=72 Identities=6% Similarity=0.016 Sum_probs=46.0
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-hhC----C-----CCcEEeCCCccHHHHH
Q 016570 295 KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIF-AQN----P-----VWPVIEVTGKAIEETA 364 (387)
Q Consensus 295 KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf-~k~----~-----g~pvIDVT~kSIEEtA 364 (387)
..|=|+.+++.+.+-+.+|. |+ .+.+...--.+++..++-| +.. + -=-+||+++.++||++
T Consensus 119 ~~V~L~A~~e~r~~R~~~~~---~~------~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv 189 (201)
T 3fdi_A 119 ISAFILGDKDTKTKRVMERE---GV------DEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTAT 189 (201)
T ss_dssp EEEEEEECHHHHHHHHHHHH---TC------CHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHh---CC------CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHH
Confidence 47889999998887555552 32 1222333333334555443 220 0 1258999999999999
Q ss_pred HHHHHHHhccc
Q 016570 365 AVVLRLYHDRK 375 (387)
Q Consensus 365 a~Il~~~~~r~ 375 (387)
..|+++++.+.
T Consensus 190 ~~I~~~i~~~~ 200 (201)
T 3fdi_A 190 DMIIKYIDSRD 200 (201)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhc
Confidence 99999997654
No 62
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.46 E-value=1.7 Score=39.11 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCce
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyK 272 (387)
|.|.|.++||||=+|-+||. .|+.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhh
Confidence 88999999999999999996 7865
No 63
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.76 E-value=2.8 Score=38.72 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=45.7
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-HHHHHHHHHH-HHHHhhhCCCCcEEeCCCccHHHHHHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-MDYVREELEF-AGRIFAQNPVWPVIEVTGKAIEETAAVVLR 369 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~-~e~I~~EL~~-A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~ 369 (387)
.+..+|=|+++|+.+.+--+.| |- ...|-. .....+.+.. -.+++++.++|-+||.+ +++||+.+.|.+
T Consensus 154 ~PDlvi~Ldv~~e~~~~Ri~~R----~~----~dr~E~~~~~~~~rv~~~y~~la~~~~~~~vIDa~-~sieeV~~~I~~ 224 (236)
T 3lv8_A 154 KPDLTLYLDIDPKLGLERARGR----GE----LDRIEKMDISFFERARERYLELANSDDSVVMIDAA-QSIEQVTADIRR 224 (236)
T ss_dssp CCSEEEEEECCHHHHHHC---------C----CCTTTTSCHHHHHHHHHHHHHHHHHCTTEEEEETT-SCHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhc----CC----cchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHHHH
Confidence 3567899999999887633334 21 122332 1223333332 33555554469999965 799999999999
Q ss_pred HHhccc
Q 016570 370 LYHDRK 375 (387)
Q Consensus 370 ~~~~r~ 375 (387)
.+.+.-
T Consensus 225 ~l~~~l 230 (236)
T 3lv8_A 225 ALQDWL 230 (236)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 64
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.61 E-value=4.4 Score=36.59 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=45.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CH---HHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EM---DYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAV 366 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA--~~---e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~ 366 (387)
.|..+|=|+++|+.+.+-...| |- ...|- +. +++++- -+++.++...|-+||. ++++||+.+.
T Consensus 132 ~PDl~i~Ldv~~e~~~~Ri~~R----~~----~dr~E~~~~~f~~rv~~~---y~~la~~~~~~~vIDa-~~s~eeV~~~ 199 (213)
T 4tmk_A 132 RPDLTLYLDVTPEVGLKRARAR----GE----LDRIEQESFDFFNRTRAR---YLELAAQDKSIHTIDA-TQPLEAVMDA 199 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH----SS----CCTTTTSCHHHHHHHHHH---HHHHHHTCTTEEEEET-TSCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhc----CC----ccchhhhHHHHHHHHHHH---HHHHHHHCCcEEEECC-CCCHHHHHHH
Confidence 3567899999999887644445 21 11232 22 233322 1223333226899995 6899999999
Q ss_pred HHHHHhcccc
Q 016570 367 VLRLYHDRKH 376 (387)
Q Consensus 367 Il~~~~~r~~ 376 (387)
|.+.+.+...
T Consensus 200 I~~~l~~~l~ 209 (213)
T 4tmk_A 200 IRTTVTHWVK 209 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 65
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.38 E-value=0.6 Score=42.62 Aligned_cols=73 Identities=16% Similarity=0.293 Sum_probs=46.0
Q ss_pred CCCcEEEE-ecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHH-HHHHHhhh----C-CCCcEEeCCCccHHHHH
Q 016570 292 DPEKVFGL-TINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELE-FAGRIFAQ----N-PVWPVIEVTGKAIEETA 364 (387)
Q Consensus 292 ~~~KI~GL-TIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~-~A~~lf~k----~-~g~pvIDVT~kSIEEtA 364 (387)
.|+.+|=| +++|+.+.+ |.. .+ ...|-..+ -.+-+. .-.+++++ . .+|-+||+.++++||++
T Consensus 125 ~PDlti~L~dv~pe~~~~----R~~-~~-----~dr~E~~~-f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~ 193 (216)
T 3tmk_A 125 KPDLTLFLSTQDVDNNAE----KSG-FG-----DERYETVK-FQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVE 193 (216)
T ss_dssp CCSEEEEEECSCCSCGGG----CCS-SS-----CCTTCCHH-HHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHH
T ss_pred CCCEEEEEeCCCHHHHHH----Hhc-cC-----cccccHHH-HHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHH
Confidence 46678999 999998754 321 11 23454422 222222 22333332 1 26999999999999999
Q ss_pred HHHHHHHhccc
Q 016570 365 AVVLRLYHDRK 375 (387)
Q Consensus 365 a~Il~~~~~r~ 375 (387)
+.|.+.+....
T Consensus 194 ~~I~~~i~~~l 204 (216)
T 3tmk_A 194 ALIWQIVEPVL 204 (216)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987764
No 66
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.30 E-value=0.37 Score=40.99 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.4
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
|.|+|.++||||=++-.||.+|+.+-
T Consensus 11 I~i~G~~GsGKST~~~~La~~g~~~i 36 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSWGYPVL 36 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEE
Confidence 88999999999999999997787664
No 67
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.89 E-value=1.4 Score=44.59 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=22.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN 275 (387)
|+|+|+|++|||=++..|| .+|..+-|
T Consensus 5 i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred EEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 7899999999999999999 55655444
No 68
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=83.36 E-value=0.34 Score=51.41 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.3
Q ss_pred cEEeCCCccHHHHHHHHHHHHhccc
Q 016570 351 PVIEVTGKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 351 pvIDVT~kSIEEtAa~Il~~~~~r~ 375 (387)
-+||++++++||++..|++.+..+.
T Consensus 200 lvIDts~~s~eevv~~Il~~L~~~~ 224 (630)
T 1x6v_B 200 LVLKTDSCDVNDCVQQVVELLQERD 224 (630)
T ss_dssp EEEETTSSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999997653
No 69
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=81.87 E-value=0.55 Score=39.55 Aligned_cols=27 Identities=41% Similarity=0.456 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN 275 (387)
|+|.|+++||||=++-.||. .|+.+-+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 89999999999999999994 6876543
No 70
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.87 E-value=0.54 Score=43.07 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
|+|+|+++||||=++.-|| +.|+.+-|.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 7899999999999999999 567766543
No 71
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=81.57 E-value=0.63 Score=41.26 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.6
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccC
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM 280 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~PLVp 280 (387)
|+++|.|++|||-+..-|+ .+|+||+-+-.-+
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 7899999999999988777 4699998766544
No 72
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=81.08 E-value=0.64 Score=38.48 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=64.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCC---------------------------------------C
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVE---------------------------------------L 284 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLVp----~v~---------------------------------------l 284 (387)
|+|.|.++||||=++-+||+ .|+.+-+.=-+. +.. +
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~~~~ 82 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGGLGA 82 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCCEeC
Confidence 89999999999999999996 688765410000 000 0
Q ss_pred C-cccccc-CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHH
Q 016570 285 P-KSLFQV-DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEE 362 (387)
Q Consensus 285 P-~eLf~v-~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEE 362 (387)
. ..+... ....+|-|+.+++.+. +|+..-+ .. +... ...+++++-+......+.+. . -+| .++.++||
T Consensus 83 ~~~~~~~l~~~~~~i~l~~~~e~~~----~R~~~r~-~r-~~~~-~~~~~i~~~~~~~~~~~~~~-~-~~i-~~~~~~~~ 152 (168)
T 2pt5_A 83 NEEALNFMKSRGTTVFIDIPFEVFL----ERCKDSK-ER-PLLK-RPLDEIKNLFEERRKIYSKA-D-IKV-KGEKPPEE 152 (168)
T ss_dssp CHHHHHHHHTTSEEEEEECCHHHHH----HHCBCTT-CC-BGGG-SCGGGTHHHHHHHHHHHTTS-S-EEE-ECSSCHHH
T ss_pred CHHHHHHHHcCCEEEEEECCHHHHH----HHHhCCC-CC-CCCc-chHHHHHHHHHHHHHHHHhC-C-EEE-CCCCCHHH
Confidence 0 000000 1346777888876544 4542211 00 1100 11334444333323445442 3 356 66799999
Q ss_pred HHHHHHHHHhcc
Q 016570 363 TAAVVLRLYHDR 374 (387)
Q Consensus 363 tAa~Il~~~~~r 374 (387)
++..|++.+..+
T Consensus 153 ~~~~i~~~l~~~ 164 (168)
T 2pt5_A 153 VVKEILLSLEGN 164 (168)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhc
Confidence 999999999764
No 73
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=81.03 E-value=4.8 Score=36.64 Aligned_cols=71 Identities=11% Similarity=-0.026 Sum_probs=47.4
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh-----------CCCCcEEeCCCccHHH
Q 016570 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQ-----------NPVWPVIEVTGKAIEE 362 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k-----------~~g~pvIDVT~kSIEE 362 (387)
...|=|+.+++.+.+-+.+|. |+ .+.+..+--++++..++-|-+ . -=-+||++..++||
T Consensus 138 ~~~VfL~A~~e~r~~Ri~~~~---~~------~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~-~dl~IdT~~l~~ee 207 (223)
T 3hdt_A 138 LIRIFVYTDKVKKVQRVMEVD---CI------DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKN-YDLPINTTKLTLEE 207 (223)
T ss_dssp EEEEEEECCHHHHHHHHHHHH---TC------CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGG-CSEEEECTTCCHHH
T ss_pred eEEEEEECCHHHHHHHHHHhc---CC------CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc-CeEEEECCCCCHHH
Confidence 457889999998877554442 33 123333444445555554332 2 23589999999999
Q ss_pred HHHHHHHHHhcc
Q 016570 363 TAAVVLRLYHDR 374 (387)
Q Consensus 363 tAa~Il~~~~~r 374 (387)
++..|++.++.+
T Consensus 208 vv~~I~~~i~~~ 219 (223)
T 3hdt_A 208 TAELIKAYIRLK 219 (223)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999754
No 74
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=80.98 E-value=0.71 Score=38.58 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=20.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCce
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyK 272 (387)
|||.|.|+||||=++-.||+ .|+.
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC
Confidence 89999999999999999994 4543
No 75
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=80.62 E-value=0.68 Score=38.36 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.4
Q ss_pred EEEEccCCCCCChhhHHhhh--cCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLAQ--KGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~--~GyKVAN 275 (387)
|+|.|+++||||=++-.|++ .|+.+-+
T Consensus 5 I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 78999999999999999996 4554433
No 76
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=79.71 E-value=0.73 Score=45.44 Aligned_cols=27 Identities=44% Similarity=0.572 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN 275 (387)
|||+|+++||||=|++-|| +.|..+-|
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~~eiIs 70 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence 8999999999999999999 56755433
No 77
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=79.43 E-value=4.8 Score=36.23 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=44.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-HHHHHHHHH-HHHHHhhhCC-CCcEEeCCCccHHHHHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-MDYVREELE-FAGRIFAQNP-VWPVIEVTGKAIEETAAVVL 368 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~-~e~I~~EL~-~A~~lf~k~~-g~pvIDVT~kSIEEtAa~Il 368 (387)
.|..+|=|+++|+.+.+ |+..-|- ...|-. .....+.+. .-+++.++.+ .|-+||.+ +++||+.+.|.
T Consensus 131 ~PDlvi~Ld~~~e~~~~----Ri~~R~~----~dr~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~-~s~eeV~~~I~ 201 (213)
T 4edh_A 131 RPDLTLVFDLPVEIGLA----RAAARGR----LDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAG-LPLAEVQAGLD 201 (213)
T ss_dssp CCSEEEEEECCHHHHHH----HHCCCSS----CCTTTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETT-SCHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHH----HHHhcCC----cCcccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCC-CCHHHHHHHHH
Confidence 35678999999998865 4432221 122322 112222222 2233443332 48999965 79999999999
Q ss_pred HHHhcc
Q 016570 369 RLYHDR 374 (387)
Q Consensus 369 ~~~~~r 374 (387)
+.+.+.
T Consensus 202 ~~l~~~ 207 (213)
T 4edh_A 202 RLLPNL 207 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 78
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=79.42 E-value=5.8 Score=35.39 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=41.3
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHH-HHHHHHHH-HHHHhhhCC-CCcEEeCCCccHHHHHHHHHH
Q 016570 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMD-YVREELEF-AGRIFAQNP-VWPVIEVTGKAIEETAAVVLR 369 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e-~I~~EL~~-A~~lf~k~~-g~pvIDVT~kSIEEtAa~Il~ 369 (387)
|+.+|=|+++|+...+--..| |-. ...|-... .-.+-+.. -.+++++.+ +|.+||. ++++||+.+.|.+
T Consensus 125 PDl~i~Ld~~~e~~~~Ri~~r----~~~---~dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa-~~~~e~V~~~i~~ 196 (205)
T 4hlc_A 125 PDLTIYLNVSAEVGRERIIKN----SRD---QNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNA-DQPLENVVEDTYQ 196 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEET-TSCHHHHHHHHHH
T ss_pred CCEEeeeCCCHHHHHHHHHhc----CCc---ccchhccCHHHHHHHHHHHHHHHHhCCCCEEEEEC-CCCHHHHHHHHHH
Confidence 567899999999887622222 211 11222110 01111211 124444442 4899996 5899999999999
Q ss_pred HHhcc
Q 016570 370 LYHDR 374 (387)
Q Consensus 370 ~~~~r 374 (387)
.+.+.
T Consensus 197 ~i~~~ 201 (205)
T 4hlc_A 197 TIIKY 201 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 79
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=79.20 E-value=3.9 Score=36.35 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEcCC-------------HHHHHHHHHHHHHcCCCEeecchHHHHHHHH
Q 016570 144 VEQLMVIIKQAAKDGA-MLVYTLAD-------------PSMAESAKKACELWGIPSTDVLGPITEAIAS 198 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~~-iV~~Tlvd-------------~elr~~l~~~~~~~gi~~vDllgp~i~~le~ 198 (387)
.+.+.++|+.+++.++ +|+.|..- .++.+.+++.|+++||++||+...+.+.++.
T Consensus 111 ~~~l~~~i~~~~~~g~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~iD~~~~~~~~~~~ 179 (233)
T 1k7c_A 111 PAYLENAAKLFTAKGAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYVDHWSYVDSIYET 179 (233)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEEecHHHHHHHHHH
Confidence 4456777777765553 45555431 1567899999999999999999888766543
No 80
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=78.87 E-value=3 Score=34.51 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEcCC---------HHHHHHHHHHHHHcCCCEeecch
Q 016570 144 VEQLMVIIKQAAKDGA-MLVYTLAD---------PSMAESAKKACELWGIPSTDVLG 190 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~~-iV~~Tlvd---------~elr~~l~~~~~~~gi~~vDllg 190 (387)
.+.+.++++.+.+.++ +|+.++.- .++.+.+++.|+++|++++|++.
T Consensus 89 ~~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~~ 145 (185)
T 3hp4_A 89 QTNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFFM 145 (185)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCTT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcchh
Confidence 4456777777766664 55566422 37889999999999999999864
No 81
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=78.00 E-value=0.89 Score=38.41 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.8
Q ss_pred EEEEccCCCCCChhhHHhhhc----Cceee
Q 016570 249 IILSGVSRTGKTPLSIYLAQK----GYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~----GyKVA 274 (387)
|+|+|.++||||=++-.||.+ |+.+.
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 789999999999999999964 87664
No 82
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=77.46 E-value=4.7 Score=33.66 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCC-EEEEEcCC----------------HHHHHHHHHHHHHcCCCEeecchHH
Q 016570 145 EQLMVIIKQAAKDGA-MLVYTLAD----------------PSMAESAKKACELWGIPSTDVLGPI 192 (387)
Q Consensus 145 e~l~~ii~~a~~~~~-iV~~Tlvd----------------~elr~~l~~~~~~~gi~~vDllgp~ 192 (387)
+.+..+++.+.+.++ +|+.|+.- .++.+.+++.|+++|++++|+...+
T Consensus 101 ~~~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~~~~ 165 (204)
T 3p94_A 101 GNLVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYVDYHSAM 165 (204)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEECHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEEchhhhh
Confidence 345666777765553 66666521 5677889999999999999987766
No 83
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=77.42 E-value=1 Score=39.70 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN 275 (387)
|+|.|.++||||=++-.|| ..|+.+-+
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 8999999999999999999 67887653
No 84
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=76.89 E-value=6.5 Score=33.55 Aligned_cols=52 Identities=4% Similarity=-0.013 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCC-EEEEEcCC-------------------------HHHHHHHHHHHHHcCCCEeecchHHHHHH
Q 016570 145 EQLMVIIKQAAKDGA-MLVYTLAD-------------------------PSMAESAKKACELWGIPSTDVLGPITEAI 196 (387)
Q Consensus 145 e~l~~ii~~a~~~~~-iV~~Tlvd-------------------------~elr~~l~~~~~~~gi~~vDllgp~i~~l 196 (387)
+.+.++++.+.+.++ +|+.|... .++.+.+++.|+++|++++|+...+....
T Consensus 100 ~~l~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~vD~~~~~~~~~ 177 (240)
T 3mil_A 100 DNIRQMVSLMKSYHIRPIIIGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSDALAKLANEEKVPFVALNKAFQQEG 177 (240)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCCHHHHHHHCHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHhCCeEEehHHHHhhcC
Confidence 456666777766564 66666511 26667888999999999999877766554
No 85
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.64 E-value=1 Score=43.93 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=24.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
|+|+|+++||||=++..|| +.|+.+.|.
T Consensus 8 i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 8999999999999999999 567666654
No 86
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=75.96 E-value=8.1 Score=32.25 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCC-EEEEEcCC---------HHHHHHHHHHHHHcCCCEeecchH
Q 016570 145 EQLMVIIKQAAKDGA-MLVYTLAD---------PSMAESAKKACELWGIPSTDVLGP 191 (387)
Q Consensus 145 e~l~~ii~~a~~~~~-iV~~Tlvd---------~elr~~l~~~~~~~gi~~vDllgp 191 (387)
+.+.++++.+.+.++ +|+.|+.. .++.+.+++.|+++|++++|++..
T Consensus 86 ~~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~ 142 (190)
T 1ivn_A 86 QTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFME 142 (190)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCTHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccHHh
Confidence 456777777766554 66666521 567888999999999999999743
No 87
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=75.93 E-value=1.1 Score=39.19 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=24.4
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~ 276 (387)
|+|+|.++||||=++-.||+ .|+.+-+.
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 89999999999999999994 68877653
No 88
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.39 E-value=1.2 Score=43.84 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCc
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGY 271 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~Gy 271 (387)
|||+|+|++|||-|++.|| ..|.
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTE
T ss_pred EEEECCCcCCHHHHHHHHHHhCcc
Confidence 7899999999999999999 4553
No 89
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=74.22 E-value=0.83 Score=41.36 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=21.2
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCce
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-KGYK 272 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~GyK 272 (387)
-++|.|.++||||=+.-.+|+ .|+.
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~ 91 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFP 91 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 489999999999999999995 4443
No 90
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=74.00 E-value=8 Score=32.21 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEc--CC-----------HHHHHHHHHHHHHcCCCEeecchHHHHHH
Q 016570 144 VEQLMVIIKQAAKDGA-MLVYTL--AD-----------PSMAESAKKACELWGIPSTDVLGPITEAI 196 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~~-iV~~Tl--vd-----------~elr~~l~~~~~~~gi~~vDllgp~i~~l 196 (387)
.+.+.++++.+.+.++ +|+.|. .. .++.+.+++.|+++|++++|+...+.+..
T Consensus 116 ~~~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vD~~~~~~~~~ 182 (216)
T 3rjt_A 116 RDTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQAEFDRLL 182 (216)
T ss_dssp HHHHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEEEcHHHHHHHH
Confidence 4556677777765564 666651 11 35788889999999999999977766543
No 91
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=73.98 E-value=1.4 Score=44.28 Aligned_cols=27 Identities=41% Similarity=0.588 Sum_probs=23.3
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceee
Q 016570 248 DIILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
=|+++|.+++|||-|+.-|| ++|+||+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVl 131 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPA 131 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 48899999999999998777 4689986
No 92
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=73.90 E-value=1.4 Score=39.16 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=24.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~ 276 (387)
|+|.|.++||||=++-.||+ .|+.+-+.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 79999999999999999994 69887665
No 93
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=73.36 E-value=1.4 Score=35.81 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.7
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
-++|.|.++||||=+.-.+|+.
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999954
No 94
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=72.60 E-value=2.3 Score=39.77 Aligned_cols=48 Identities=23% Similarity=0.186 Sum_probs=31.8
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCcee
Q 016570 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYKV 273 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~-~GyKV 273 (387)
.+++.+.+++.+--.-..-..--|+|.|.++||||=+.-.+|+ .|..+
T Consensus 31 ~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 79 (322)
T 3eie_A 31 KEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 79 (322)
T ss_dssp HHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE
Confidence 3567777777642111112223499999999999999999994 35443
No 95
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=72.39 E-value=1.5 Score=38.89 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cceeee
Q 016570 249 IILSGVSRTGKTPLSIYLAQK-GYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~-GyKVAN 275 (387)
|.|.|.++||||=++-+||.+ |+.+-+
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 789999999999999999977 988766
No 96
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=72.24 E-value=1.3 Score=38.85 Aligned_cols=80 Identities=15% Similarity=0.126 Sum_probs=44.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhc---CCCC-C--------CCCCCCCHHHHHHHHHHHHHHhh--hCCCCcEEeCCC
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSL---GFRD-E--------IRSNYSEMDYVREELEFAGRIFA--QNPVWPVIEVTG 357 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~l---Gl~~-~--------~~S~YA~~e~I~~EL~~A~~lf~--k~~g~pvIDVT~ 357 (387)
..++.+=|+++++-...+++.-.... =.+. . .... -+.+.+++-|+.+..-+. .....-++|
T Consensus 97 ~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~-~~~e~i~~Rl~~~~~e~~~~~~~d~vivN--- 172 (208)
T 3tau_A 97 AAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGT-ESMEVVEERMETAKKEIEMMASYDYAVVN--- 172 (208)
T ss_dssp HTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC--------CCHHHHHHHHHHHHHHHHGGGSSEEEEC---
T ss_pred HcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhccCCEEEEC---
Confidence 35677778999988887765321100 0011 0 0001 234667777777764322 222433443
Q ss_pred ccHHHHHHHHHHHHhccc
Q 016570 358 KAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 358 kSIEEtAa~Il~~~~~r~ 375 (387)
-.+||+...|.+++...+
T Consensus 173 ~~~~~~~~~l~~~i~~~~ 190 (208)
T 3tau_A 173 DVVANAVQKIKGIVETEH 190 (208)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 259999999999997643
No 97
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=71.88 E-value=1.4 Score=37.41 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016570 249 IILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~G 270 (387)
|+|+|.|+||||=++-.|+..+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 7899999999999999999654
No 98
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=71.64 E-value=1.4 Score=37.68 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=40.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH-HHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016570 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG-RIFAQNPVWPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~-~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
+..+|-|+.+++.+. +|+.. + ...|.+ +.+.+.+..+. +..... .+-+||.+ .++||++..|++.+
T Consensus 131 ~d~vi~l~~~~e~~~----~Rl~~-r-----~~r~~~-~~~~~~~~~~~~~~~~~~-~~~~Id~~-~~~~~~~~~i~~~l 197 (212)
T 2wwf_A 131 PDVVFYLNVPPNYAQ----NRSDY-G-----EEIYEK-VETQKKIYETYKHFAHED-YWINIDAT-RKIEDIHNDIVKEV 197 (212)
T ss_dssp CSEEEEEECCTTGGG----GSTTT-T-----SSTTCS-HHHHHHHHHHGGGGTTCT-TEEEEECS-SCHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHH----Hhhcc-C-----cccccH-HHHHHHHHHHHHHHhccC-CEEEEECC-CCHHHHHHHHHHHH
Confidence 445777777776543 24321 1 112433 34444443222 222232 57899987 89999999999999
Q ss_pred hcc
Q 016570 372 HDR 374 (387)
Q Consensus 372 ~~r 374 (387)
...
T Consensus 198 ~~~ 200 (212)
T 2wwf_A 198 TKI 200 (212)
T ss_dssp TTS
T ss_pred HHh
Confidence 765
No 99
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=71.59 E-value=1.6 Score=42.68 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=22.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN 275 (387)
|||+|++++|||-|++-|| ..|..+-|
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~iis 40 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVELIS 40 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEE
T ss_pred EEEECCCccCHHHHHHHHHHhCCCcEEe
Confidence 7899999999999999999 45544444
No 100
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=71.37 E-value=1.3 Score=38.52 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|+|+|+|++|||=++-.|+.
T Consensus 15 i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999994
No 101
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=70.45 E-value=19 Score=34.95 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=76.9
Q ss_pred eecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhH
Q 016570 186 TDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSI 264 (387)
Q Consensus 186 vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD-IVLvGVSRTsKTPlSm 264 (387)
-|++...++.|++........ ..|+.-. |..++.+ + .||..-| +||.|.+++|||-+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~----~~gi~TG-----~~~LD~~---~--------gGl~~G~LiiIaG~pG~GKTt~al 64 (338)
T 4a1f_A 5 KEVLESAMDLITENQRKGSLE----VTGIPTG-----FVQLDNY---T--------SGFNKGSLVIIGARPSMGKTSLMM 64 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC----CCSBCCS-----CHHHHHH---H--------CSBCTTCEEEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCC----cCcccCC-----ChHHHHH---h--------cCCCCCcEEEEEeCCCCCHHHHHH
Confidence 367777888888765411211 2332222 2222222 2 2455555 6778999999999999
Q ss_pred HhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhh--cCCCCC--CCCCCCCHHHHHHHHHHH
Q 016570 265 YLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARS--LGFRDE--IRSNYSEMDYVREELEFA 340 (387)
Q Consensus 265 YLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~--lGl~~~--~~S~YA~~e~I~~EL~~A 340 (387)
-+|....+ .+ .+--+|.|.++++.|.. |+.+ .|++.. ......+.+ ...|..|
T Consensus 65 ~ia~~~a~-------~g----------~~Vl~fSlEms~~ql~~----Rlls~~~~v~~~~l~~g~Ls~~e--~~~l~~a 121 (338)
T 4a1f_A 65 NMVLSALN-------DD----------RGVAVFSLEMSAEQLAL----RALSDLTSINMHDLESGRLDDDQ--WENLAKC 121 (338)
T ss_dssp HHHHHHHH-------TT----------CEEEEEESSSCHHHHHH----HHHHHHHCCCHHHHHHTCCCHHH--HHHHHHH
T ss_pred HHHHHHHH-------cC----------CeEEEEeCCCCHHHHHH----HHHHHhhCCCHHHHhcCCCCHHH--HHHHHHH
Confidence 99854221 00 01124777788887765 2211 111100 000111111 1234445
Q ss_pred HHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016570 341 GRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 341 ~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
-..+.+. .+-+.|....+++|+.+.+-.+..+
T Consensus 122 ~~~l~~~-~l~I~d~~~~si~~i~~~ir~l~~~ 153 (338)
T 4a1f_A 122 FDHLSQK-KLFFYDKSYVRIEQIRLQLRKLKSQ 153 (338)
T ss_dssp HHHHHHS-CEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CeEEeCCCCCcHHHHHHHHHHHHHh
Confidence 5555554 5777788888899988888766543
No 102
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=70.13 E-value=19 Score=34.37 Aligned_cols=78 Identities=12% Similarity=0.136 Sum_probs=51.9
Q ss_pred EeCChHHH-HHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHH-------hCCCEEEEEcCCHHHHHH
Q 016570 103 VSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAA-------KDGAMLVYTLADPSMAES 173 (387)
Q Consensus 103 VSDsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p-~V~t~e~l~~ii~~a~-------~~~~iV~~Tlvd~elr~~ 173 (387)
-.+..|.. |+.+++.+....|++ ++..++ .+++.+.++++++.+. ..--+|+-.+-+.+.|..
T Consensus 82 ~~~diG~~Ka~aa~~~L~~iNP~v--------~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~ 153 (292)
T 3h8v_A 82 QPHQAGLSKVQAAEHTLRNINPDV--------LFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMT 153 (292)
T ss_dssp --CCTTSBHHHHHHHHHHHHCTTS--------EEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHH
T ss_pred ChhhcCchHHHHHHHHHHhhCCCc--------EEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhH
Confidence 44556654 455555555555653 344443 5666677777765432 222599999999999999
Q ss_pred HHHHHHHcCCCEeec
Q 016570 174 AKKACELWGIPSTDV 188 (387)
Q Consensus 174 l~~~~~~~gi~~vDl 188 (387)
+.+.|.++++|+|+.
T Consensus 154 in~~c~~~~~Pli~~ 168 (292)
T 3h8v_A 154 INTACNELGQTWMES 168 (292)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHHHHHhCCCEEEe
Confidence 999999999999874
No 103
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=70.11 E-value=66 Score=32.01 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=21.4
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~ 268 (387)
||..-| +||.|.+++|||=+++-+|.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 566666 56779999999999999984
No 104
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=69.71 E-value=9 Score=33.04 Aligned_cols=47 Identities=11% Similarity=0.236 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhC--C-CEEEEEcCC--------------------HHHHHHHHHHHHHcCCCEeecchH
Q 016570 145 EQLMVIIKQAAKD--G-AMLVYTLAD--------------------PSMAESAKKACELWGIPSTDVLGP 191 (387)
Q Consensus 145 e~l~~ii~~a~~~--~-~iV~~Tlvd--------------------~elr~~l~~~~~~~gi~~vDllgp 191 (387)
..+..+|+.+.+. + .||+.|... .++.+.+++.|+++|++++|+...
T Consensus 114 ~~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~v~~iD~~~~ 183 (232)
T 3dc7_A 114 GALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLYRD 183 (232)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHHHTCCEEEHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCcccCCccCCcccccccccchHHHHHHHHHHHHHHHcCCcEEecccc
Confidence 3667777776544 2 477766532 778999999999999999999765
No 105
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=68.95 E-value=1.7 Score=35.63 Aligned_cols=22 Identities=41% Similarity=0.365 Sum_probs=19.6
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
-++|.|.++||||=+.-.+|+.
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 106
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=68.72 E-value=17 Score=33.37 Aligned_cols=72 Identities=8% Similarity=0.016 Sum_probs=50.3
Q ss_pred CChH-HHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 016570 105 DGTG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGI 183 (387)
Q Consensus 105 DsTG-eTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~gi 183 (387)
+..| .-|+.+++.+...+|++ ++..++.-=+.+.+.++++++ -+|+-+.-+.+.|..+.+.|.+.++
T Consensus 77 ~diG~~Ka~~~~~~l~~~np~~--------~v~~~~~~~~~~~~~~~~~~~----DvVi~~~d~~~~r~~l~~~~~~~~~ 144 (251)
T 1zud_1 77 EDIDRPKSQVSQQRLTQLNPDI--------QLTALQQRLTGEALKDAVARA----DVVLDCTDNMATRQEINAACVALNT 144 (251)
T ss_dssp GGTTSBHHHHHHHHHHHHCTTS--------EEEEECSCCCHHHHHHHHHHC----SEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred hhCCCHHHHHHHHHHHHHCCCC--------EEEEEeccCCHHHHHHHHhcC----CEEEECCCCHHHHHHHHHHHHHhCC
Confidence 3345 35677777777667763 333333222456666666542 4889888899999999999999999
Q ss_pred CEeec
Q 016570 184 PSTDV 188 (387)
Q Consensus 184 ~~vDl 188 (387)
|+|+.
T Consensus 145 p~i~~ 149 (251)
T 1zud_1 145 PLITA 149 (251)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99985
No 107
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=67.91 E-value=1.9 Score=36.53 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCcEEeCCCccHHHHHHHHHHHHhc
Q 016570 349 VWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 349 g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
.+-+||++++++||+++.|++.+..
T Consensus 159 ~~~~Id~~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 159 PQLVLDTESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp CSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999998854
No 108
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=67.70 E-value=2.2 Score=41.98 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCc
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGY 271 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~Gy 271 (387)
|+|+|.|+||||=++.-|| +.|.
T Consensus 10 I~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTE
T ss_pred EEEECCCcCcHHHHHHHHHHHcCC
Confidence 7899999999999999999 5673
No 109
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=67.56 E-value=2.4 Score=38.62 Aligned_cols=26 Identities=27% Similarity=0.615 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
|+|.|.|++||+=|++.|.++|++.-
T Consensus 19 vli~G~SGaGKStlal~L~~rG~~lv 44 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDRGHQLV 44 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHTTCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCeEe
Confidence 89999999999999999999998753
No 110
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=67.43 E-value=2.5 Score=37.14 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=24.6
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~PL 278 (387)
++|+|.|++|||-+.-.|. .+|++|+-+=.
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 7899999999999987776 36899885544
No 111
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=67.26 E-value=1.9 Score=35.64 Aligned_cols=32 Identities=31% Similarity=0.352 Sum_probs=24.3
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
.-|+|.|.++||||=+.-++++..-+ .+.|++
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~v 56 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRN-AQGEFV 56 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTT-TTSCCE
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCc-cCCCEE
Confidence 45999999999999999999976322 234544
No 112
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=66.91 E-value=9.1 Score=32.30 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCC--C-EEEEEcC--------------C---HHHHHHHHHHHHHcCCCEeecchHHH
Q 016570 145 EQLMVIIKQAAKDG--A-MLVYTLA--------------D---PSMAESAKKACELWGIPSTDVLGPIT 193 (387)
Q Consensus 145 e~l~~ii~~a~~~~--~-iV~~Tlv--------------d---~elr~~l~~~~~~~gi~~vDllgp~i 193 (387)
+.+.++|+.+++.+ + ||+.|+. + .++.+.+++.|++.+++++|++..+.
T Consensus 96 ~~l~~ii~~l~~~~p~~~ii~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~~~ 164 (200)
T 4h08_A 96 KSFPKLIKIIRKYAPKAKLIWANTTPVRTGEGMKEFAPITERLNVRNQIALKHINRASIEVNDLWKVVI 164 (200)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCCCCEESGGGCEECTHHHHHHHHHHHHHHHHHHTTCEEECHHHHHT
T ss_pred HHHHHHHHHHhhhCCCccEEEeccCCCcccccccccchhHHHHHHHHHHHHHHhhhcceEEEecHHhHh
Confidence 44666777765443 3 5665542 1 24566788889999999999877654
No 113
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=66.71 E-value=0.97 Score=38.79 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016570 249 IILSGVSRTGKTPLSIYLAQ----KGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyKVA 274 (387)
|+|+|+|+||||=++-.|+. .|++|.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 78999999999999999883 366653
No 114
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=66.54 E-value=2 Score=36.75 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=41.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhh--cCCCCCCCCCCCCH-HHHHHHHHHHHH-H---hhhCCCCcEEeCCCccHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARS--LGFRDEIRSNYSEM-DYVREELEFAGR-I---FAQNPVWPVIEVTGKAIEETA 364 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~--lGl~~~~~S~YA~~-e~I~~EL~~A~~-l---f~k~~g~pvIDVT~kSIEEtA 364 (387)
..++++=|++|++-+.++|+.-... .-+..+........ +.| +.+..|.+ + +... +-++ +.+-.+|++.
T Consensus 94 ~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R~~~i-~r~~~~~~~~~~~~~~~--~d~~-i~n~~~~~~~ 169 (180)
T 1kgd_A 94 EQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESL-QRLQKESDILQRTYAHY--FDLT-IINNEIDETI 169 (180)
T ss_dssp HTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCCSHHH-HHHHHHHHHHHHHHGGG--CSEE-EECSSHHHHH
T ss_pred HCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHhhHHHH-HHHHHHHHHHHHhhhCC--CcEE-EECcCHHHHH
Confidence 4578899999999988876421110 01111111122222 334 45555542 2 2332 3333 2233799999
Q ss_pred HHHHHHHhc
Q 016570 365 AVVLRLYHD 373 (387)
Q Consensus 365 a~Il~~~~~ 373 (387)
+.|.+++.+
T Consensus 170 ~~l~~~i~~ 178 (180)
T 1kgd_A 170 RHLEEAVEL 178 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988853
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=66.46 E-value=2.8 Score=34.72 Aligned_cols=130 Identities=17% Similarity=0.129 Sum_probs=66.8
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC-----------C-----CCCCcc---------------ccccCC
Q 016570 245 QKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM-----------G-----VELPKS---------------LFQVDP 293 (387)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp-----------~-----v~lP~e---------------Lf~v~~ 293 (387)
..--|+|||.+++|||=|.-.|.+....+.++|-+- + ++.|-. .+....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 345699999999999999999987656666666331 0 011110 011011
Q ss_pred CcEEEEecChhHHHHHHHHH--HhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCC---ccHHHHHHHHH
Q 016570 294 EKVFGLTINPLVLQSIRKAR--ARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTG---KAIEETAAVVL 368 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~eR--lk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il 368 (387)
-.++=+.+|...+.+++..- +...+.+----.+=.|+..-+.-...++++.++. ||+++-++. ..|+|.-..|.
T Consensus 86 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~i~ 164 (188)
T 2wjg_A 86 PDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLSAAKKMGIEELKKAIS 164 (188)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECBGGGTBSHHHHHHHHH
T ss_pred CCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHh-CCCeEEEEecCCCCHHHHHHHHH
Confidence 23455566665555443321 2112211000000011111000001344555564 889888864 47899999998
Q ss_pred HHHhccc
Q 016570 369 RLYHDRK 375 (387)
Q Consensus 369 ~~~~~r~ 375 (387)
+.+..+.
T Consensus 165 ~~~~~~~ 171 (188)
T 2wjg_A 165 IAVKDKK 171 (188)
T ss_dssp HHHTTC-
T ss_pred HHHHhcc
Confidence 8887654
No 116
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=66.44 E-value=17 Score=28.26 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=41.0
Q ss_pred HHHHHHHhCCC--EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016570 149 VIIKQAAKDGA--MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 149 ~ii~~a~~~~~--iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
++++.++...+ +|+..=++|++...+...|++++||++.+.+ -..|....|.+.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~s--k~eLG~a~Gk~~ 73 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVES--MKKLGKACGIEV 73 (82)
T ss_dssp HHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESC--HHHHHHHHTCSS
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC--HHHHHHHhCCCC
Confidence 34444444333 6667778899999999999999999999874 478888888764
No 117
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=66.37 E-value=3.8 Score=39.27 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=30.5
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCcee
Q 016570 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKV 273 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA-~~GyKV 273 (387)
.+++.+.++|.+--.-..-..--|+|.|.++||||=++-.+| ..|..+
T Consensus 64 ~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 112 (355)
T 2qp9_X 64 KEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 112 (355)
T ss_dssp HHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 345666666654211111111248999999999999999999 445443
No 118
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=66.28 E-value=2.4 Score=38.70 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.2
Q ss_pred EEEEccCCCCCChhhHHhhh--cCceee
Q 016570 249 IILSGVSRTGKTPLSIYLAQ--KGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~--~GyKVA 274 (387)
|+|.|+|+||||=++-.|++ .|+.+-
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 79999999999999999996 366544
No 119
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=66.21 E-value=3.2 Score=38.77 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|||.|+|+||||=++-.|+.
T Consensus 36 ivl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999984
No 120
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=66.03 E-value=13 Score=32.04 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCC-EEEEEcC--C---------------HHHHHHHHHHHHHcCCCEeecchHHH
Q 016570 145 EQLMVIIKQAAKDGA-MLVYTLA--D---------------PSMAESAKKACELWGIPSTDVLGPIT 193 (387)
Q Consensus 145 e~l~~ii~~a~~~~~-iV~~Tlv--d---------------~elr~~l~~~~~~~gi~~vDllgp~i 193 (387)
+.+..+++.++..+. +|+.|+. + .++.+.+++.|++.++++||+..+++
T Consensus 105 ~~l~~ii~~~~~~~~~iil~~~~P~~~~~~~~~~~~~~~~i~~~n~~i~~~a~~~~v~~iD~~~~~~ 171 (209)
T 4hf7_A 105 GNIASMAELAKANKIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYAKANKIPFVNYYQPMV 171 (209)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCSCCTTCTTCCCHHHHHHHHHHHHHHHHHHTTCCEECSHHHHE
T ss_pred HHHHHhhHHHhccCceEEEEeeeccCcccccccccchhHHHHHHHHHHHHHHHhcCCeEeecHHHHh
Confidence 345666776666564 6666652 0 35677889999999999999987763
No 121
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=65.76 E-value=14 Score=36.45 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCCcCcE-EEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHh--hcCC
Q 016570 243 NLQKADI-ILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARAR--SLGF 319 (387)
Q Consensus 243 ~L~~ADI-VLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk--~lGl 319 (387)
||..-++ +|.|.+++|||=+++-+|....+-.+ .+--.|.|..+++.|.. |+. ..|+
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g----------------~~vl~~slE~~~~~l~~----R~~~~~~~i 255 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG----------------VGVGIYSLEMPAAQLTL----RMMCSEARI 255 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC----------------CCEEEEESSSCHHHHHH----HHHHHHTTC
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC----------------CeEEEEECCCCHHHHHH----HHHHHHcCC
Confidence 5666665 66899999999999999843211000 01225667777776653 332 2344
Q ss_pred CCCCCCCCC----CHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016570 320 RDEIRSNYS----EMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 320 ~~~~~S~YA----~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
+. ...- +.+. ...+..|-..+... .+-+.|....+++|+.+.|.++..+
T Consensus 256 ~~---~~l~~g~l~~~~-~~~~~~a~~~l~~~-~l~i~d~~~~s~~~l~~~~~~l~~~ 308 (444)
T 2q6t_A 256 DM---NRVRLGQLTDRD-FSRLVDVASRLSEA-PIYIDDTPDLTLMEVRARARRLVSQ 308 (444)
T ss_dssp CT---TTCCGGGCCHHH-HHHHHHHHHHHHTS-CEEEECCTTCBHHHHHHHHHHHHHH
T ss_pred CH---HHHhCCCCCHHH-HHHHHHHHHHHhcC-CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 31 1111 1111 11222233333343 4666677677888887777665543
No 122
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=65.62 E-value=2.5 Score=39.97 Aligned_cols=30 Identities=37% Similarity=0.389 Sum_probs=23.4
Q ss_pred cEEEEccCCCCCChhhHHhh-----hcCceeeecc
Q 016570 248 DIILSGVSRTGKTPLSIYLA-----QKGYKVANVP 277 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-----~~GyKVAN~P 277 (387)
=|+|+|++++|||=|+.-|| ..|+||.=+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 37889999999999988887 2687765443
No 123
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=65.51 E-value=2.5 Score=37.24 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=21.1
Q ss_pred EEEEccCCCCCChhhHHhhh-cCcee
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKV 273 (387)
|+|.|.++||||=+.-.+|+ .|..+
T Consensus 42 vll~G~~GtGKT~la~~la~~~~~~~ 67 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEAQVPF 67 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 89999999999999999994 45443
No 124
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=65.30 E-value=2.2 Score=36.23 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.4
Q ss_pred CCcEEeCCCccHHHHHHHHHHHHhcc
Q 016570 349 VWPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 349 g~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
.|-+||.+ +++||++..|++.+...
T Consensus 184 ~~~~Id~~-~~~e~v~~~I~~~l~~~ 208 (213)
T 2plr_A 184 NFIVIDGT-KTPKEIQIQIRKFVGEL 208 (213)
T ss_dssp TCEEEETT-SCHHHHHHHHHHHHHHH
T ss_pred CEEEEECC-CCHHHHHHHHHHHHHHH
Confidence 58899975 79999999999988653
No 125
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=64.55 E-value=3 Score=37.50 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVA 274 (387)
++|.|.++||||=+.-.+| ..|..+.
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 9999999999999999999 4455443
No 126
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=64.49 E-value=5.5 Score=36.50 Aligned_cols=72 Identities=10% Similarity=0.179 Sum_probs=41.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH-HHHHHHHH-HHHHHhhhCC-CCcEEeCCCccHHHHHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM-DYVREELE-FAGRIFAQNP-VWPVIEVTGKAIEETAAVVL 368 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~-e~I~~EL~-~A~~lf~k~~-g~pvIDVT~kSIEEtAa~Il 368 (387)
.|..+|=|+++|+.+.+ |+..-|- ...|-.. ....+.+. .-++++++.+ .|-+||.+ +++||+.+.|.
T Consensus 151 ~PDl~I~Ldv~~e~~~~----Ri~~R~~----~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~-~s~eeV~~~I~ 221 (227)
T 3v9p_A 151 QPDLTVLFDVPPQIASA----RRGAVRM----PDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSS-EPIAQIRKQLE 221 (227)
T ss_dssp CCSEEEEEECCSSCGGG----TTTCCCC----C---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETT-SCHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHH----HHHhccC----ccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCC-CCHHHHHHHHH
Confidence 35678999999998755 3322121 1234431 12222222 2233444332 48999965 89999999999
Q ss_pred HHHh
Q 016570 369 RLYH 372 (387)
Q Consensus 369 ~~~~ 372 (387)
+.+.
T Consensus 222 ~~l~ 225 (227)
T 3v9p_A 222 GVLA 225 (227)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 127
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=63.81 E-value=19 Score=30.32 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=12.2
Q ss_pred CCcEEEEecChhHHHH
Q 016570 293 PEKVFGLTINPLVLQS 308 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~ 308 (387)
+..+|-|+++++.+.+
T Consensus 122 ~~~vi~l~~~~e~~~~ 137 (213)
T 2plr_A 122 PDITFYIRVSPDIALE 137 (213)
T ss_dssp CSEEEEEECCHHHHHH
T ss_pred CCEEEEEeCCHHHHHH
Confidence 4568999999987654
No 128
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=63.42 E-value=34 Score=30.66 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=44.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-------------hhCCCCcEEeCCCc
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIF-------------AQNPVWPVIEVTGK 358 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf-------------~k~~g~pvIDVT~k 358 (387)
.+..+|=|+++|+.+.+-...| |-+ ...+-+.+ ..+.|....+-| .+. .|-+||.+.
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R----~r~---~~~~~~~~-~~~~l~~~~~~~~~~~~v~~~y~~~~~~-~~~~Id~~~- 243 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLR----GRN---EEQGIPLE-YLEKLHYKHESWLLHRTLKTNFDYLQEV-PILTLDVNE- 243 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH----CCG---GGTTCCHH-HHHHHHHHHHHHHTTCCCCCSCGGGGGS-CEEEEECCS-
T ss_pred CCCeEEEEECCHHHHHHHHHhc----CCc---cccCccHH-HHHHHHHHHHHHHhhccchhhhhhhccC-CEEEEECCC-
Confidence 3567999999999987744445 221 01122222 222333322222 233 378899886
Q ss_pred cHHHHHHHHHHHHhcc
Q 016570 359 AIEETAAVVLRLYHDR 374 (387)
Q Consensus 359 SIEEtAa~Il~~~~~r 374 (387)
++||+...|++.+...
T Consensus 244 ~~eev~~~I~~~l~~~ 259 (263)
T 1p5z_B 244 DFKDKYESLVEKVKEF 259 (263)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988653
No 129
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=63.26 E-value=3 Score=36.76 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=14.0
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
|+|+|+|++|||=|+-.|+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEECSCC----CHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999998
No 130
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=63.25 E-value=2.2 Score=40.53 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=21.7
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016570 245 QKADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
...-|+|.|.++||||=++-.||+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999954
No 131
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=63.20 E-value=2.6 Score=35.44 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.8
Q ss_pred CcEEeCCCccHHHHHHHHHHHHhcc
Q 016570 350 WPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 350 ~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
..+||+++.++||++..|++.+...
T Consensus 152 ~~~i~t~~~~~~~~~~~i~~~l~~~ 176 (191)
T 1zp6_A 152 HHVLPVSGKDTDQALQSAINALQSG 176 (191)
T ss_dssp GGEEECTTCCTTTTTTTTHHHHHHT
T ss_pred ccEEECCCCCHHHHHHHHHHHHHhh
Confidence 4589999999999999999998654
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=62.89 E-value=2.6 Score=40.86 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=30.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
-|||+|||-+.+|||=|.-.|.+.-.+++|||..-
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftT 192 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTT 192 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccc
Confidence 48999999999999999888887778999999653
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=62.71 E-value=2.3 Score=35.82 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=22.1
Q ss_pred cEEEEccCCCCCChhhHHhhh-----cCceeee
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-----KGYKVAN 275 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-----~GyKVAN 275 (387)
=++|+|.++||||=|...+|+ .|+++.-
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 389999999999999988873 3665544
No 134
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=62.54 E-value=3.1 Score=35.55 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=24.9
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
++..-. ++|+|.+++|||=++.-|| ..|.+|.=+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i 51 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYV 51 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEE
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 344444 5789999999999999998 455555443
No 135
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=62.19 E-value=17 Score=30.55 Aligned_cols=61 Identities=8% Similarity=-0.146 Sum_probs=37.0
Q ss_pred EEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCc---cHHHHHHHHH
Q 016570 296 VFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGK---AIEETAAVVL 368 (387)
Q Consensus 296 I~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~k---SIEEtAa~Il 368 (387)
++.|..+++.|.+ |.+..+++. .-+.+.++. .+.-+.+. +. +..+||+|+. .+||++..|+
T Consensus 105 ~i~L~~~~e~l~~----R~~~r~~d~-----~ld~~~~~~-~~~~~~~~-~~-~~~ii~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 105 FIILWTNREELLR----RDALRKKDE-----QMGERCLEL-VEEFESKG-ID-ERYFYNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp EEEEECCHHHHHH----HTTTSCC---------CGGGGHH-HHHHHHTT-CC-TTSEEECSSSCGGGHHHHHHHHH
T ss_pred EEEEeCCHHHHHH----HHHhccccc-----cCCHHHHHH-HHHHhhcC-CC-ccEEEeCCCCChhhHHHHHHHHh
Confidence 5778888876643 555444421 122323333 33333343 33 6789999999 9999999998
No 136
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=61.88 E-value=13 Score=32.17 Aligned_cols=25 Identities=0% Similarity=0.062 Sum_probs=22.5
Q ss_pred CcEEeCCCccHHHHHHHHHHHHhcc
Q 016570 350 WPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 350 ~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
+-+||++++++||++..|++.+..+
T Consensus 179 ~~~IDt~~~s~eev~~~I~~~l~~~ 203 (211)
T 1m7g_A 179 EVHVKNYELPVQDAVKQIIDYLDTK 203 (211)
T ss_dssp SEEEECSSSCHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999764
No 137
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=61.49 E-value=23 Score=32.32 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=47.8
Q ss_pred ChH-HHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 016570 106 GTG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIP 184 (387)
Q Consensus 106 sTG-eTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~gi~ 184 (387)
..| .-|+.+++.+...+|++ ++..++.--+.+.+.+++.+ --+|+-+.-+.+.+..+.+.|.+.|+|
T Consensus 81 diG~~Ka~~~~~~l~~~np~~--------~v~~~~~~~~~~~~~~~~~~----~DvVi~~~d~~~~~~~l~~~~~~~~~p 148 (249)
T 1jw9_B 81 TVGQPKVESARDALTRINPHI--------AITPVNALLDDAELAALIAE----HDLVLDCTDNVAVRNQLNAGCFAAKVP 148 (249)
T ss_dssp GTTSBHHHHHHHHHHHHCTTS--------EEEEECSCCCHHHHHHHHHT----SSEEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred hcCcHHHHHHHHHHHHHCCCc--------EEEEEeccCCHhHHHHHHhC----CCEEEEeCCCHHHHHHHHHHHHHcCCC
Confidence 345 35677777666666753 23333321234555555432 248888889999999999999999999
Q ss_pred Eeec
Q 016570 185 STDV 188 (387)
Q Consensus 185 ~vDl 188 (387)
+|+.
T Consensus 149 ~i~~ 152 (249)
T 1jw9_B 149 LVSG 152 (249)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9984
No 138
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=61.09 E-value=3.3 Score=42.05 Aligned_cols=29 Identities=34% Similarity=0.595 Sum_probs=23.3
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeee
Q 016570 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVAN 275 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN 275 (387)
.=|+++|++++|||-|+.-|| ++|+||+=
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 348899999999999877666 56999853
No 139
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=60.58 E-value=3.3 Score=34.08 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=22.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~P 277 (387)
.-|+|||.+++|||=|.--|+..-..+.++|
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~ 34 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWP 34 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC---
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCC
Confidence 3489999999999998888876545566665
No 140
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=60.55 E-value=69 Score=26.24 Aligned_cols=134 Identities=13% Similarity=0.170 Sum_probs=66.6
Q ss_pred CCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeecccc--------------------CCCCCCccccc--cCCCcEEE
Q 016570 241 PQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV--------------------MGVELPKSLFQ--VDPEKVFG 298 (387)
Q Consensus 241 ~~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV--------------------p~v~lP~eLf~--v~~~KI~G 298 (387)
+..-...-|+|+|-+.+|||=|.-.|.+.-+...++.-. |+.+--..+.. ...-.++=
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 334455679999999999998888877544333222111 11111111111 11223444
Q ss_pred EecC---hhHHHHHHHHHHhhcCC-----------CCC-----CCC---CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCC
Q 016570 299 LTIN---PLVLQSIRKARARSLGF-----------RDE-----IRS---NYSEMDYVREELEFAGRIFAQNPVWPVIEVT 356 (387)
Q Consensus 299 LTId---PerL~~IR~eRlk~lGl-----------~~~-----~~S---~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT 356 (387)
|.+| ++.+..+++.-...+.. ..+ ... .-.+.+.+.+++. ...++++. +|+++-++
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~S 169 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILD-LTTLMGDH-PFVIFASN 169 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHT-HHHHHTTS-CEEEEECB
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhc-chhhccCC-eeEEEEee
Confidence 4444 44455555433322211 000 011 1123455655554 22333665 89999886
Q ss_pred C---ccHHHHHHHHHHHHhcccc
Q 016570 357 G---KAIEETAAVVLRLYHDRKH 376 (387)
Q Consensus 357 ~---kSIEEtAa~Il~~~~~r~~ 376 (387)
. ..|+|.-..|++.+.++..
T Consensus 170 a~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 170 GLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHC-
T ss_pred CCCccCHHHHHHHHHHHHHHHhc
Confidence 5 4699999999888766543
No 141
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=60.49 E-value=3.3 Score=38.56 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
++|.|.++||||=++-.+| ..|+++..+
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 5566999999999999999 456555443
No 142
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=60.35 E-value=48 Score=31.05 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=55.7
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhc--CC
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSL--GF 319 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~l--Gl 319 (387)
||..-+ ++|.|.+++|||=+++-+|....+ .+ .+--.|.|..+++.|.+ |+.++ |+
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-------~g----------~~vl~~slE~s~~~l~~----R~~~~~~~i 122 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------ND----------DVVNLHSLEMGKKENIK----RLIVTAGSI 122 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-------TT----------CEEEEEESSSCHHHHHH----HHHHHHTTC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cC----------CeEEEEECCCCHHHHHH----HHHHHHcCC
Confidence 444444 677899999999999999943211 01 11225777778777653 33322 32
Q ss_pred CCC---CCC---CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016570 320 RDE---IRS---NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 320 ~~~---~~S---~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
+.. .+. .-.+..+ +..|-..+.+. .+-+.|....+++++.+.|.++..+
T Consensus 123 ~~~~l~~~~~~l~~~~~~~----l~~a~~~l~~~-~i~i~d~~~~~~~~i~~~i~~l~~~ 177 (315)
T 3bh0_A 123 NAQKIKAARRDFASEDWGK----LSMAIGEISNS-NINIFDKAGQSVNYIWSKTRQTKRK 177 (315)
T ss_dssp CHHHHHSCHHHHCSSCHHH----HHHHHHHHHTS-CEEEECCSCCBHHHHHHHHHHHHHT
T ss_pred CHHHHhcCCCCCCHHHHHH----HHHHHHHHhCC-CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 100 000 0011112 22333333342 4556666667888887777665543
No 143
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=60.30 E-value=12 Score=32.04 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCC-------------HHHHHHHHHHHHHcCCCEeecchHH
Q 016570 145 EQLMVIIKQAAKDGAMLVYTLAD-------------PSMAESAKKACELWGIPSTDVLGPI 192 (387)
Q Consensus 145 e~l~~ii~~a~~~~~iV~~Tlvd-------------~elr~~l~~~~~~~gi~~vDllgp~ 192 (387)
+.+.++|+.+.+...||+.|+.- .++.+.+++.|++++++++|+...+
T Consensus 117 ~~l~~li~~l~~~~~iil~~~~p~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~~~~ 177 (218)
T 1vjg_A 117 KNTREILTQAKKLYPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLL 177 (218)
T ss_dssp HHHHHHHHHHHHHSCEEEECCCCCCCTTCTTHHHHHHHHHHHHHHHHHHHTCCEECCTGGG
T ss_pred HHHHHHHHHHHHhCcEEEECCCCccccccchHHHHHHHHHHHHHHHHHHcCCcEEehHHhh
Confidence 44556666654334577776532 2578889999999999999998765
No 144
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=59.49 E-value=4.3 Score=36.83 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=21.7
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCcee
Q 016570 248 DIILSGVSRTGKTPLSIYLA-QKGYKV 273 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKV 273 (387)
-++|.|.++||||=+.-.+| ..|...
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 48999999999999999999 455443
No 145
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=59.46 E-value=3.2 Score=35.18 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|+|.|++|||=+.-.||.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 68999999999999999984
No 146
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=59.41 E-value=2.8 Score=41.47 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=20.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCc
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGY 271 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~Gy 271 (387)
++|.|+++||||-++..||+ .|.
T Consensus 66 iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 66 VLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCT
T ss_pred EEEECCCcCCHHHHHHHHHHHhCC
Confidence 99999999999999999994 453
No 147
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=59.40 E-value=7 Score=36.87 Aligned_cols=43 Identities=28% Similarity=0.198 Sum_probs=29.8
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016570 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
.+++.+.++|.+--.-..-.--=|+|.|.++||||=+.-.+|+
T Consensus 25 ~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 25 KEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp HHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 3567787877653221011112389999999999999999995
No 148
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=59.22 E-value=6.9 Score=37.31 Aligned_cols=48 Identities=25% Similarity=0.229 Sum_probs=29.8
Q ss_pred hhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceee
Q 016570 227 EAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVA 274 (387)
Q Consensus 227 eAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA-~~GyKVA 274 (387)
+++.+.+.+.+--.--.-...-|+|.|.++||||=+.-.+| ..|+.+.
T Consensus 98 ~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 98 EIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp HHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 45555555554211000111249999999999999999999 4555443
No 149
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=58.97 E-value=3.8 Score=36.80 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.7
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-KGY 271 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~Gy 271 (387)
-++|.|.++||||=++-++|+ .|.
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 499999999999999999994 443
No 150
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=58.44 E-value=3.3 Score=36.92 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=21.2
Q ss_pred CCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCce
Q 016570 213 GRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYK 272 (387)
Q Consensus 213 G~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA-~~GyK 272 (387)
|.--.+-+.||..+.. .+ -=|+|+|.+++|||=++=-|| ..|+.
T Consensus 10 ~~~~~~~~~~~~~~~~-----------~~-----~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 10 GVDLGTENLYFQSMAS-----------KL-----LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp ---------------------------CC-----CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ccchhHHHHHHHHhcC-----------CC-----cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3334445778877642 11 138999999999999999998 33543
No 151
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=58.04 E-value=4.4 Score=38.79 Aligned_cols=26 Identities=35% Similarity=0.296 Sum_probs=21.3
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~ 268 (387)
+|..-. ++|.|.++||||-+++.||.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455555 47889999999999999994
No 152
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=57.74 E-value=4.6 Score=37.44 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.2
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
-|+|.|.++||||=+.-.||+
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 389999999999999999994
No 153
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=57.39 E-value=7.8 Score=37.19 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=22.8
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCceee
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~-~GyKVA 274 (387)
.-|+|.|.++||||=+.-.+|+ .|..+.
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 3599999999999999999994 455443
No 154
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=57.33 E-value=5.2 Score=25.78 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHh
Q 016570 359 AIEETAAVVLRLYH 372 (387)
Q Consensus 359 SIEEtAa~Il~~~~ 372 (387)
||||+|.+|.+..-
T Consensus 2 sIEEaA~RIVdaVi 15 (26)
T 2drn_C 2 LIEEAASRIVDAVI 15 (26)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 89999999998553
No 155
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=57.27 E-value=4.2 Score=40.79 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.3
Q ss_pred EEEEccCCCCCChhhHHhh----hc-Cceee
Q 016570 249 IILSGVSRTGKTPLSIYLA----QK-GYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~-GyKVA 274 (387)
|+++|.+++|||=++.-|| .+ |+||.
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVl 133 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVL 133 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 7788999999999988777 44 99987
No 156
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=57.17 E-value=3.7 Score=35.06 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.4
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
--++|.|.++||||=++..+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988884
No 157
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=57.12 E-value=4.4 Score=36.30 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=20.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
|.++|-+|||||=++.-||..|.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSE
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCe
Confidence 6789999999999999999556443
No 158
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=57.08 E-value=4.8 Score=36.86 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=67.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC-----------C-----CCCCc---------------cccccCCCc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM-----------G-----VELPK---------------SLFQVDPEK 295 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp-----------~-----v~lP~---------------eLf~v~~~K 295 (387)
--|+|+|-+.+|||=|.-.|.....++.|+|-+- + +++|- ..+....--
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d 85 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDAD 85 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCC
Confidence 3589999999999999988887778899988432 0 11111 111111233
Q ss_pred EEEEecChhHHHHHHH--HHHhhcCCCCCCCCCCCCHHHHHHHH-HHHHHHhhhCCCCcEEeCC---CccHHHHHHHHHH
Q 016570 296 VFGLTINPLVLQSIRK--ARARSLGFRDEIRSNYSEMDYVREEL-EFAGRIFAQNPVWPVIEVT---GKAIEETAAVVLR 369 (387)
Q Consensus 296 I~GLTIdPerL~~IR~--eRlk~lGl~~~~~S~YA~~e~I~~EL-~~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~ 369 (387)
++=+.+|...+.+.-. ..+..+|.+-----+=.|+..-+ ++ ..++++.+++ |||++-++ +..|+|.-..|.+
T Consensus 86 ~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~-~i~~~~~~l~~~l-g~~vi~~SA~~g~gi~el~~~i~~ 163 (258)
T 3a1s_A 86 LVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKT-GMKIDRYELQKHL-GIPVVFTSSVTGEGLEELKEKIVE 163 (258)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHT-TCCBCHHHHHHHH-CSCEEECCTTTCTTHHHHHHHHHH
T ss_pred EEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCcc-chHHHHHHHHHHc-CCCEEEEEeeCCcCHHHHHHHHHH
Confidence 5556666544332211 11222332100000011111100 00 1245666674 99999887 5579999999888
Q ss_pred HHhc
Q 016570 370 LYHD 373 (387)
Q Consensus 370 ~~~~ 373 (387)
.+..
T Consensus 164 ~~~~ 167 (258)
T 3a1s_A 164 YAQK 167 (258)
T ss_dssp HHHS
T ss_pred Hhhc
Confidence 7753
No 159
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=56.99 E-value=3.8 Score=36.43 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=27.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH-HHhh----hCC-CCcEEeCCCccHHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG-RIFA----QNP-VWPVIEVTGKAIEETAA 365 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~-~lf~----k~~-g~pvIDVT~kSIEEtAa 365 (387)
.++.+|=|+++|+.+.+--.+| |... ..+-+. ...+.+.... +++. +.. .|-+||. +.++||+..
T Consensus 146 ~pD~vi~Ld~~~e~~~~Ri~~R----~r~~---e~~~~~-~~~~rv~~~~~~~~~~~~~~~~~~~~vId~-~~~~eev~~ 216 (230)
T 2vp4_A 146 QADLIIYLRTSPEVAYERIRQR----ARSE---ESCVPL-KYLQELHELHEDWLIHQRRPQSCKVLVLDA-DLNLENIGT 216 (230)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH----CCGG---GTTCCH-HHHHHHHHHHHHHHTSCCSSCCCEEEEEEC-CC-------
T ss_pred CCCEEEEEeCCHHHHHHHHHHc----CCcc---cccCcH-HHHHHHHHHHHHHHHHhcccCCCCEEEEEC-CCCHHHHHH
Confidence 4677999999998876522234 3321 112221 1222222221 2221 111 3678997 569999999
Q ss_pred HHHHHHhcc
Q 016570 366 VVLRLYHDR 374 (387)
Q Consensus 366 ~Il~~~~~r 374 (387)
.|.+.+...
T Consensus 217 ~I~~~l~~~ 225 (230)
T 2vp4_A 217 EYQRSESSI 225 (230)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999988653
No 160
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=56.86 E-value=30 Score=27.72 Aligned_cols=43 Identities=16% Similarity=0.357 Sum_probs=36.9
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016570 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+..=+++..+..+...|+.++||++.+ +--..|...+|.++
T Consensus 39 ViiA~D~~~~~~~~i~~~c~~~~vp~~~~--~s~~eLG~A~Gk~~ 81 (101)
T 3v7q_A 39 VLLTEDASSNTAKKVTDKCNYYKVPYKKV--ESRAVLGRSIGKEA 81 (101)
T ss_dssp EEEETTSCHHHHHHHHHHHHHTTCCEEEE--SCHHHHHHHTTSSC
T ss_pred EEEeccccccchhhhcccccccCCCeeee--chHHHHHhhhCccc
Confidence 66677778999999999999999999998 46778999999875
No 161
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=56.85 E-value=3.6 Score=37.35 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.9
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
-++|.|.++||||=+.-.+|+
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999988884
No 162
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=56.82 E-value=3.5 Score=36.97 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
.-|+|.|.++||||=+.-++++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 459999999999999999999653
No 163
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=56.58 E-value=29 Score=27.66 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=36.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016570 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+..=+++..+..+...|++++||++.+ +--..|...+|.++
T Consensus 38 ViiA~D~~~~~~~~i~~~c~~~~ip~~~~--~s~~eLG~a~Gk~~ 80 (101)
T 3on1_A 38 VILSSDAGIHTKKKLLDKCGSYQIPVKVV--GNRQMLGRAIGKHE 80 (101)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHTCCEEEE--SCHHHHHHHTTSSC
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEe--CCHHHHHHHhCCcC
Confidence 66677788999999999999999999976 45678999999875
No 164
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=56.43 E-value=3.9 Score=41.30 Aligned_cols=27 Identities=48% Similarity=0.668 Sum_probs=22.5
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceee
Q 016570 248 DIILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
=|+++|++++|||-|+.-|| ..|+||+
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVl 129 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVG 129 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 37889999999999987666 5688885
No 165
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=56.21 E-value=4.7 Score=35.94 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|+|.++||||=++-.||+
T Consensus 48 vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 99999999999999999994
No 166
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=56.15 E-value=40 Score=32.47 Aligned_cols=147 Identities=15% Similarity=0.052 Sum_probs=87.8
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEE-cC----
Q 016570 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYT-LA---- 166 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~T-lv---- 166 (387)
..++.|++|.|.-+.. ..++.-...+..+ ++++..+.||--.|++++.+.|+++.++. +|+++- |-
T Consensus 34 ~P~Lavilvg~dpaS~--~Yv~~k~k~~~~~----Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id 107 (285)
T 3l07_A 34 TPKLVAIIVGNDPASK--TYVASKEKACAQV----GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHIN 107 (285)
T ss_dssp CCEEEEEEESCCHHHH--HHHHHHHHHHHHH----TCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSC
T ss_pred CceEEEEEECCCHHHH--HHHHHHHHHHHHc----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcC
Confidence 4567888898876643 3333333333322 25678889998889999999999986653 566543 21
Q ss_pred CHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCc
Q 016570 167 DPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQK 246 (387)
Q Consensus 167 d~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ 246 (387)
...+.+.+ .-++ -+|-|+|+ +.-.-..|..|.. . .-.-.-=|+.++.. + -+|..
T Consensus 108 ~~~v~~~I---~p~K---DVDG~~~~-N~G~l~~g~~~~~----~-------PcTp~gv~~lL~~~----~----i~l~G 161 (285)
T 3l07_A 108 KNNVIYSI---KPEK---DVDGFHPT-NVGRLQLRDKKCL----E-------SCTPKGIMTMLREY----G----IKTEG 161 (285)
T ss_dssp HHHHHHHS---CGGG---BTTCCSHH-HHHHHHHTCTTCC----C-------CHHHHHHHHHHHHT----T----CCCTT
T ss_pred HHHHHhhC---Cccc---ccccCChh-heeehhcCCCCCC----C-------CCCHHHHHHHHHHh----C----CCCCC
Confidence 12333333 2233 34667774 3223334532321 1 12333334444432 1 26788
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCcee
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
+.+++||-|+.==.|+++.|.++|..|
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtV 188 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATV 188 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeE
Confidence 999999999965569999999998765
No 167
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.46 E-value=5.8 Score=39.96 Aligned_cols=55 Identities=31% Similarity=0.394 Sum_probs=38.9
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 218 LSEEYFRRIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 218 ld~~YF~RIeAIeFavkhDD-----G~~~~~L~~ADIVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
+++.--.=-|+|+|-++|-+ |..|. -=|+|.|+++||||=+.--+| +.|...-++
T Consensus 153 l~~~k~~l~e~v~~Pl~~pe~f~~~gi~~p----rGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 153 LTKQIKEIKEVIELPVKHPELFESLGIAQP----KGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCC----CCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 33333344478999998876 55442 138999999999999999999 456554443
No 168
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=55.24 E-value=16 Score=29.80 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCC--------------HHHHHHHHHHHHHcCCCEeecchHHHH
Q 016570 145 EQLMVIIKQAAKDGAMLVYTLAD--------------PSMAESAKKACELWGIPSTDVLGPITE 194 (387)
Q Consensus 145 e~l~~ii~~a~~~~~iV~~Tlvd--------------~elr~~l~~~~~~~gi~~vDllgp~i~ 194 (387)
+.+..+++.+. ...+|+.|+.. .++.+.+++.|++++++++|+...+..
T Consensus 93 ~~l~~~i~~~~-~~~vi~~~~~p~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~iD~~~~~~~ 155 (195)
T 1yzf_A 93 ENLETMIHEIG-SEKVILITPPYADSGRRPERPQTRIKELVKVAQEVGAAHNLPVIDLYKAMTV 155 (195)
T ss_dssp HHHHHHHHHHC-GGGEEEECCCCCCTTTCTTSCHHHHHHHHHHHHHHHHHTTCCEECHHHHHHH
T ss_pred HHHHHHHHHhc-CCEEEEEcCCCCccccchhhhHHHHHHHHHHHHHHHHHhCCeEEehHHHHhh
Confidence 34566666665 33577777641 356788889999999999998877654
No 169
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=55.12 E-value=3 Score=41.07 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=24.0
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccc
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPI 278 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~PL 278 (387)
++|.|.++||||-+++.+|+ .|++|.=+-+
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 58899999999999999994 5666654444
No 170
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=55.01 E-value=3.7 Score=33.86 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
.-|+|.|.++||||=+.-++++..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhC
Confidence 349999999999999999998654
No 171
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=54.76 E-value=3.9 Score=35.58 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|+|+|.+++|||=++-.|+.
T Consensus 28 i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999983
No 172
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=54.39 E-value=5.3 Score=36.09 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.2
Q ss_pred cEEEEccCCCCCChhhHHhhh-cC
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-KG 270 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~G 270 (387)
=|+|+|.|+||||=++--|+. .|
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999994 44
No 173
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=54.04 E-value=4.7 Score=36.76 Aligned_cols=127 Identities=14% Similarity=0.087 Sum_probs=71.6
Q ss_pred CCCCcCcE-EEEccCCCCCChhhHHhh-hcCceeeec-------------------------cccCC-------------
Q 016570 242 QNLQKADI-ILSGVSRTGKTPLSIYLA-QKGYKVANV-------------------------PIVMG------------- 281 (387)
Q Consensus 242 ~~L~~ADI-VLvGVSRTsKTPlSmYLA-~~GyKVAN~-------------------------PLVp~------------- 281 (387)
..+.++=| +|+|..++||+=.|-.|| .+|+..-.. -|||+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~ 103 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIK 103 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 44555555 568999999999999999 667764321 12320
Q ss_pred ----------CCCCccccc--------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHH-----
Q 016570 282 ----------VELPKSLFQ--------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELE----- 338 (387)
Q Consensus 282 ----------v~lP~eLf~--------v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~----- 338 (387)
-..|..+-| .+...++-|+++.+.+.+ |+..-+... +-.=-+.|.|++=|+
T Consensus 104 ~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~----Rl~~R~~~~--~R~DD~~e~i~~Rl~~Y~~~ 177 (217)
T 3umf_A 104 LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRK----RLLKRAETS--NRVDDNEETIVKRFRTFNEL 177 (217)
T ss_dssp HTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHH----HHSCC--------CHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHH----HHhcccccC--CCCCCCHHHHHHHHHHHHHH
Confidence 012221111 245568888888877754 542111100 000011233333222
Q ss_pred --HHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhccc
Q 016570 339 --FAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 339 --~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r~ 375 (387)
-..+.|++.-.|-.||.+ .++||+...|.+.++++.
T Consensus 178 t~pl~~~Y~~~~~l~~Idg~-~~~eeV~~~I~~~l~k~G 215 (217)
T 3umf_A 178 TKPVIEHYKQQNKVITIDAS-GTVDAIFDKVNHELQKFG 215 (217)
T ss_dssp THHHHHHHHTTTCEEEEETT-SCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHHHHcC
Confidence 223457664246778976 599999999999997654
No 174
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=54.00 E-value=4.4 Score=35.33 Aligned_cols=19 Identities=42% Similarity=0.523 Sum_probs=17.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
++|+|+|++|||=|.=-|+
T Consensus 7 i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999988876
No 175
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=53.80 E-value=8.4 Score=32.40 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=23.5
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ----KGYKVANVP 277 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~----~GyKVAN~P 277 (387)
=++|+|.++||||=|.--+++ .|+++.-++
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 488999999999999888873 376665544
No 176
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=53.67 E-value=5.6 Score=34.46 Aligned_cols=26 Identities=42% Similarity=0.649 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016570 249 IILSGVSRTGKTPLSIYLAQ----KGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyKVA 274 (387)
|.|+|.|++|||=++-.|+. .|.+|.
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 78999999999999999984 476654
No 177
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=53.53 E-value=5.8 Score=36.66 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.0
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCc--eeeeccccC
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-KGY--KVANVPIVM 280 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~Gy--KVAN~PLVp 280 (387)
-|+|.|.++||||=+.-++|+ .|. ...|-+.++
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~ 92 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE 92 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc
Confidence 499999999999999999994 443 345555543
No 178
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=53.32 E-value=5.6 Score=34.10 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=22.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc---Cceeeec
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK---GYKVANV 276 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~---GyKVAN~ 276 (387)
-|+++|-+++|||-|.-.|++. .+|++.+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i 63 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGNEVKIGAM 63 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhccCCeEEEE
Confidence 4899999999999999888832 3566644
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=53.05 E-value=4.7 Score=34.42 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=23.2
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ----KGYKVANVP 277 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~----~GyKVAN~P 277 (387)
-++|.|.++||||=+...+|+ .|+++.-+.
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 499999999999999988883 345554443
No 180
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=52.88 E-value=5.9 Score=37.60 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.7
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCce
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQ-KGYK 272 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~-~GyK 272 (387)
.-|+|.|.++||||=+.-.||+ .|..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3599999999999999999994 4443
No 181
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=52.68 E-value=8.5 Score=36.37 Aligned_cols=26 Identities=54% Similarity=0.727 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
|+++|.+++|||=++.-|| ..|.||.
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6789999999999988887 4588876
No 182
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=52.21 E-value=5.3 Score=37.48 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=25.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
.-|+|.|.++||||=+.-++++..-+ .+.|+|.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~-~~~~~v~ 58 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSAR-SDRPLVT 58 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSC-SSSCCCE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcc-cCCCeEE
Confidence 45999999999999999999975322 3456553
No 183
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=52.06 E-value=5.4 Score=37.09 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=25.1
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~P 277 (387)
-|+|+|-+.+|||=|---|.....++.|+|
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p 34 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWP 34 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCCCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCC
Confidence 489999999999988777776556788888
No 184
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=51.97 E-value=5.9 Score=37.81 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
|.++|++++|||=|+.-|| ..|.||.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 6799999999999998877 3577764
No 185
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=51.86 E-value=6.9 Score=35.50 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=27.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
-|+|+|-+++|||=|.-.|...-.++.|+|-+
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~ 36 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQHVGNWPGV 36 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCEEEEECTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCe
Confidence 48999999999999998888666688888855
No 186
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=51.82 E-value=6.5 Score=38.23 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEe-------ecchHHHHHHHHHhCCCCCCCCCCCCCC
Q 016570 144 VEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPST-------DVLGPITEAIASHLGVSPSGLPRGAPGR 214 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~v-------Dllgp~i~~le~~lG~~p~~~~~~~pG~ 214 (387)
.++-.+.++.+-..+ +|||..=.. .-+.+.+.|++++||.+ .+++-+...|+..|...-. .
T Consensus 69 ~~~r~~~~~~l~~~~iP~IIvtrg~~--pp~elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~la~~~~-----~--- 138 (312)
T 1knx_A 69 LVEQQQILHNLLKLNPPAIILTKSFT--DPTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQFATVAQ-----I--- 138 (312)
T ss_dssp HHHHTTTHHHHHTTCCSCEEEETTTC--CCHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHTCCCEE-----E---
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCC--CCHHHHHHHHHcCCEEEEeCccHHHHHHHHHHHHHHHhhhcce-----e---
Confidence 344445566664333 566654322 23355678999999976 4666777777777742210 1
Q ss_pred CCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016570 215 NFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 215 ~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
|. .+++. +| .+ |+|.|.|++||+=|++.|..+|++.-
T Consensus 139 -H~---------~~v~~-----~g-------~g-vli~G~sG~GKStlal~l~~~G~~lv 175 (312)
T 1knx_A 139 -HG---------VLLEV-----FG-------VG-VLLTGRSGIGKSECALDLINKNHLFV 175 (312)
T ss_dssp -EE---------EEEEE-----TT-------EE-EEEEESSSSSHHHHHHHHHTTTCEEE
T ss_pred -EE---------EEEEE-----CC-------EE-EEEEcCCCCCHHHHHHHHHHcCCEEE
Confidence 11 11211 12 22 99999999999999999999998753
No 187
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=51.73 E-value=5 Score=34.77 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=21.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~ 268 (387)
++..-. ++|+|.+++|||=|+.-||.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 455444 57899999999999999984
No 188
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=51.71 E-value=5.1 Score=33.26 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|.|.++||||=+.-.+|+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998884
No 189
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=51.65 E-value=6.1 Score=35.98 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.2
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCce
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-KGYK 272 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~GyK 272 (387)
-++|.|.++||||=+.-++|+ .|..
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 499999999999999999994 4543
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=51.29 E-value=5 Score=37.39 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.0
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
-++|.|.++||||=+.-++|+.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999943
No 191
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=51.18 E-value=7.1 Score=38.91 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.-++|+|.++||||-+.-.||+.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999965
No 192
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.17 E-value=6.2 Score=36.69 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.7
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
=++|.|.++||||=+.-.+++.
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999953
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=50.91 E-value=6 Score=37.31 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=20.8
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~ 268 (387)
+|..-. ++|.|.++||||-+++.||.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 344444 67889999999999999983
No 194
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=50.89 E-value=6.1 Score=36.31 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016570 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+|.|.++||||=+.-+||+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 999999999999999999954
No 195
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=50.75 E-value=8 Score=36.48 Aligned_cols=27 Identities=41% Similarity=0.586 Sum_probs=20.9
Q ss_pred EEEEccCCCCCChhhHHhh--hcCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLA--QKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA--~~GyKVAN 275 (387)
++|+|.|++|||=+--.|+ ..|+|+|=
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aV 35 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAV 35 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEE
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEE
Confidence 6899999999999887777 34555554
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=50.66 E-value=6 Score=37.88 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=27.9
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeeeccccCCCC
Q 016570 248 DIILSGVSRTGKTPLSIYLA----QKGYKVANVPIVMGVE 283 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA----~~GyKVAN~PLVp~v~ 283 (387)
-|+|+|..++|||=++.-|+ ..|+||+.+..-|..+
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 48999999999999988776 4699999988776433
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=50.61 E-value=5.3 Score=34.22 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.6
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~ 268 (387)
++..-+ +.|+|.|++|||=|..-|+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 454444 56899999999999988874
No 198
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=50.54 E-value=5.3 Score=34.27 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cC
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KG 270 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~G 270 (387)
|.|+|.|+||||=++-.|+. .|
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999994 35
No 199
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=50.54 E-value=16 Score=30.97 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=14.2
Q ss_pred CccEEEEE-eCChHHHHHHHHHHHHccC
Q 016570 96 EGKSIYMV-SDGTGWTAEHAVNAALGQF 122 (387)
Q Consensus 96 ~~~~IfiV-SDsTGeTAe~v~~AaL~QF 122 (387)
.++.|.|. -+|+|-| ++++.+..+|
T Consensus 9 ~~~~I~l~G~~GsGKS--T~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKS--TQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHH--HHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHH--HHHHHHHHHH
Confidence 34444444 6888876 4555555444
No 200
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=50.50 E-value=5.4 Score=33.97 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=19.9
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA 267 (387)
++.+-+ ++|+|.+++|||=|+..||
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 344444 5688999999999999888
No 201
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=50.37 E-value=4.2 Score=34.55 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.5
Q ss_pred EEEEccCCCCCChhhHH
Q 016570 249 IILSGVSRTGKTPLSIY 265 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmY 265 (387)
+.|+|.|++|||=|.--
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57999999999988663
No 202
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=50.14 E-value=10 Score=35.68 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=28.4
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-----hcCcee
Q 016570 228 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-----QKGYKV 273 (387)
Q Consensus 228 AIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA-----~~GyKV 273 (387)
|.+|+-.+.++ ..--++|.|.++||||=|+..+| .+|++|
T Consensus 140 ~~~~i~~~~~~------~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v 184 (308)
T 2qgz_A 140 ILDFVEQYPSA------EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVST 184 (308)
T ss_dssp HHHHHHHCSCS------SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHhcccc------CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcE
Confidence 44566555443 12459999999999999988887 346666
No 203
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=49.93 E-value=22 Score=31.92 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhC--C-CEEEEEcC-------------------------CHHHHHHHHHHHHHcCCCEeecchHH
Q 016570 144 VEQLMVIIKQAAKD--G-AMLVYTLA-------------------------DPSMAESAKKACELWGIPSTDVLGPI 192 (387)
Q Consensus 144 ~e~l~~ii~~a~~~--~-~iV~~Tlv-------------------------d~elr~~l~~~~~~~gi~~vDllgp~ 192 (387)
.+.+..+|+.+++. + .||+.|.. -.++.+.+++.|+++++++||+...+
T Consensus 144 ~~~l~~li~~lr~~~p~a~Iilitp~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~n~~i~~~a~~~~v~~vD~~~~~ 220 (274)
T 3bzw_A 144 RGRINIGITQLKKLFPDKQIVLLTPLHRSLANFGDKNVQPDESYQNGCGEYIDAYVQAIKEAGNIWGIPVIDFNAVT 220 (274)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECCCCCCCEECSTTEEECCTTBCCTTSCCHHHHHHHHHHHHHHHTCCEECHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHcCCCEEcchhhh
Confidence 35677777777543 3 36655541 15688999999999999999987644
No 204
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=49.83 E-value=27 Score=29.32 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCCEeecchHH
Q 016570 169 SMAESAKKACELWGIPSTDVLGPI 192 (387)
Q Consensus 169 elr~~l~~~~~~~gi~~vDllgp~ 192 (387)
++.+.+++.|+++|++++|+...+
T Consensus 163 ~~n~~~~~~a~~~~v~~iD~~~~~ 186 (216)
T 2q0q_A 163 ELARVYSALASFMKVPFFDAGSVI 186 (216)
T ss_dssp THHHHHHHHHHHHTCCEEEGGGTC
T ss_pred HHHHHHHHHHHHcCCcEEchhHhc
Confidence 467789999999999999986644
No 205
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=49.73 E-value=7.3 Score=33.82 Aligned_cols=30 Identities=40% Similarity=0.567 Sum_probs=22.1
Q ss_pred EEEEccCCCCCChhhHHhhhc----Cceeeeccc
Q 016570 249 IILSGVSRTGKTPLSIYLAQK----GYKVANVPI 278 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~----GyKVAN~PL 278 (387)
|.|+|.|++|||=|.--|+.. |.++.-+++
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~ 58 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEec
Confidence 669999999999998777732 444555554
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=49.67 E-value=5.6 Score=36.03 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
-++|+|.++||||=+.-+||+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 4899999999999999999954
No 207
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=49.20 E-value=6.3 Score=32.35 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=24.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~P 277 (387)
-|+++|-+++|||=|.-.|.+.-+.+.+.|
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~ 32 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRP 32 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSST
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCC
Confidence 389999999999999988886556666655
No 208
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=49.18 E-value=4.2 Score=35.32 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=20.2
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~ 268 (387)
++.+-+ +.|+|.+++|||=|..-|+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 455444 56899999999999987773
No 209
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=49.06 E-value=24 Score=32.04 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=20.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~P 277 (387)
--|+|||-+++|||=|---|-..+....++|
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~ 39 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYP 39 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCC
Confidence 4599999999999987766666667777775
No 210
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.05 E-value=6.9 Score=39.45 Aligned_cols=48 Identities=33% Similarity=0.399 Sum_probs=35.0
Q ss_pred hhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 225 RIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 225 RIeAIeFavkhDD-----G~~~~~L~~ADIVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
=.++|++-++|-+ |..+. + =|+|.|+++||||=+.-.+| +.|...-++
T Consensus 184 l~e~v~~pl~~p~~~~~~g~~~p---r-GiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 184 IREAVELPLVQADLYEQIGIDPP---R-GVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp HHHHHHHHHHCHHHHHHHCCCCC---C-EEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHhCHHHHHhCCCCCC---c-eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 3478888888865 44332 1 28999999999999999999 456554444
No 211
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=48.61 E-value=7.9 Score=35.43 Aligned_cols=31 Identities=35% Similarity=0.381 Sum_probs=26.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
|+|+|-+.+|||=|--.|...-.++.|+|-+
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~ 34 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNANQRVGNWPGV 34 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEECTTS
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCccCCCCc
Confidence 8999999999998888888666888998855
No 212
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=48.14 E-value=6.9 Score=38.62 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=22.2
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
-|+|||-+.+|||=|---|.+...+++|||..
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~t 35 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFC 35 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCc
Confidence 48999999999998888888766899999964
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=48.12 E-value=3.3 Score=37.01 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|.|.++||||=+.-.||+
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999999994
No 214
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.11 E-value=7.5 Score=35.67 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=23.6
Q ss_pred cEEEEccCCCCCChhhHHhhh-c------Cceeeecc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-K------GYKVANVP 277 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~------GyKVAN~P 277 (387)
=++|.|.+|||||=+.-.+++ . |+.+.-+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 389999999999999999984 2 66655443
No 215
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.76 E-value=7.9 Score=38.97 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=24.2
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
-++|.|.++||||=+.-.|| ..|+.+..+
T Consensus 79 ~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 48999999999999999999 567766544
No 216
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=47.74 E-value=7.5 Score=37.21 Aligned_cols=26 Identities=46% Similarity=0.626 Sum_probs=21.3
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
|.++|++++|||=|+.-|| ..|.||.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6788999999999988776 4577774
No 217
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=47.60 E-value=6.1 Score=36.53 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=24.0
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCceeeeccc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-KGYKVANVPI 278 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~GyKVAN~PL 278 (387)
-++|.|.++||||=+.-+||+ .|....-+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence 599999999999999999994 4544433333
No 218
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=47.55 E-value=7.9 Score=36.40 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
|.++|.+++|||-++.-|| ..|.||.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~~~~v~ 130 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 6688999999999998887 3476664
No 219
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=47.42 E-value=20 Score=29.77 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=25.4
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhcc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r 374 (387)
.++++.+++ ||+++-++ +..|+|.-..|++.+.++
T Consensus 150 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 150 KGQLLAEQL-GFDFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHH-TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 455666665 89998875 456888888888877554
No 220
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=47.38 E-value=10 Score=30.64 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.-|+++|.+++|||=|.-.|.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999998877743
No 221
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=47.38 E-value=7.9 Score=33.69 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=24.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPI 278 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PL 278 (387)
--|+|+|-+++|||=|.-.|.+.-+.+.++|.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~ 61 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSF 61 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEEEECC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCC
Confidence 45999999999999998888866555555554
No 222
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=47.05 E-value=6.8 Score=32.72 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.4
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|.|.++||||=+.-.+++
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999884
No 223
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=46.73 E-value=6.7 Score=35.33 Aligned_cols=78 Identities=8% Similarity=0.011 Sum_probs=43.7
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCC-----CCC--------CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccH
Q 016570 294 EKVFGLTINPLVLQSIRKARARSLGF-----RDE--------IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAI 360 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~eRlk~lGl-----~~~--------~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSI 360 (387)
++++=|++|++-..+|++. +. -|. +.+ -.-..-+.+.|+.-+..|+.-+....++-++ +.+-..
T Consensus 108 G~illLDLD~~~~~~i~~~-l~-~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~~~~~d~~-i~Nd~l 184 (219)
T 1s96_A 108 GVDVFLDIDWQGAQQIRQK-MP-HARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYL-IVNDDF 184 (219)
T ss_dssp TCEEEEECCHHHHHHHHHH-CT-TCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTTGGGSSEE-EECSSH
T ss_pred CCeEEEEECHHHHHHHHHH-cc-CCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhccCCCEE-EECcCH
Confidence 5677788888777777642 21 010 000 0001345677877777775544421123232 334689
Q ss_pred HHHHHHHHHHHhcc
Q 016570 361 EETAAVVLRLYHDR 374 (387)
Q Consensus 361 EEtAa~Il~~~~~r 374 (387)
|++...+.+++...
T Consensus 185 ~~a~~~l~~ii~~~ 198 (219)
T 1s96_A 185 DTALTDLKTIIRAE 198 (219)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888543
No 224
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=46.55 E-value=26 Score=33.85 Aligned_cols=52 Identities=17% Similarity=0.042 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCC-EEEEEcC---------------CHHHHHHHHHHHHHcCCCEeecchHHHHHH
Q 016570 145 EQLMVIIKQAAKDGA-MLVYTLA---------------DPSMAESAKKACELWGIPSTDVLGPITEAI 196 (387)
Q Consensus 145 e~l~~ii~~a~~~~~-iV~~Tlv---------------d~elr~~l~~~~~~~gi~~vDllgp~i~~l 196 (387)
+.+..+|+.+.+.++ +|+.|.. ...+++.+++.|++.++++||+...+.+.+
T Consensus 256 ~~l~~ii~~lr~~~a~vilvtP~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~~v~~iDl~~~~~~~~ 323 (375)
T 2o14_A 256 EVMRDMIRQVKAKGADVILSTPQGRATDFTSEGIHSSVNRWYRASILALAEEEKTYLIDLNVLSSAYF 323 (375)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCCCTTCBCTTSCBCCTTSTTHHHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCcccccCcccchhHHHHHHHHHHHHHHHHcCCeEEehHHHHHHHH
Confidence 346667777766664 5555543 235678899999999999999877766544
No 225
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=46.05 E-value=9 Score=35.17 Aligned_cols=32 Identities=34% Similarity=0.266 Sum_probs=27.5
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
-|+|+|-+.+|||=|.-.|......|.|+|-+
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~ 36 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGV 36 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCEEEEECTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCe
Confidence 48999999999999998888655788888854
No 226
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=45.90 E-value=7 Score=34.72 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|+|.++||||=|.-.||+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998884
No 227
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=45.79 E-value=8.4 Score=31.23 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=64.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC-C---------------CCCCc-----cccc--cCCCcEEEEecC-
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM-G---------------VELPK-----SLFQ--VDPEKVFGLTIN- 302 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp-~---------------v~lP~-----eLf~--v~~~KI~GLTId- 302 (387)
--|+|+|-+.+|||=|.-.|.+..+...+.|-+. . ++.|- .++. ...-.++=|.+|
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 88 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAA 88 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEEC
Confidence 3599999999999999988875444443333221 0 01110 0100 011123444444
Q ss_pred -----hhHHHHHHHHHHhhcCCCCC-----CCCCCCCHHHHHHHHHHHHHHhhhCCC--CcEEeCCCc---cHHHHHHHH
Q 016570 303 -----PLVLQSIRKARARSLGFRDE-----IRSNYSEMDYVREELEFAGRIFAQNPV--WPVIEVTGK---AIEETAAVV 367 (387)
Q Consensus 303 -----PerL~~IR~eRlk~lGl~~~-----~~S~YA~~e~I~~EL~~A~~lf~k~~g--~pvIDVT~k---SIEEtAa~I 367 (387)
++.+..++..+ ..+.+-- .+-.-.+.+++.++++..+.+.++. + ++++-++.+ .|+|.-..|
T Consensus 89 ~~~~~~~~~~~l~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 89 DDGVMPQTVEAINHAK--AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEW-GGDTIFCKLSAKTKEGLDHLLEMI 165 (178)
T ss_dssp TCCCCHHHHHHHHHHG--GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTT-TSSEEEEECCSSSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHH--hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHc-CCcccEEEEecCCCCCHHHHHHHH
Confidence 44455554332 2221100 0111124455665554443333332 4 688887655 688888888
Q ss_pred HHHHhccc
Q 016570 368 LRLYHDRK 375 (387)
Q Consensus 368 l~~~~~r~ 375 (387)
++.+...+
T Consensus 166 ~~~~~~~~ 173 (178)
T 2lkc_A 166 LLVSEMEE 173 (178)
T ss_dssp HHHHHHTT
T ss_pred HHhhhhhc
Confidence 88776543
No 228
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=45.65 E-value=10 Score=33.79 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=24.0
Q ss_pred EEEEccCCCCCChhhHHhh---------hcC-ce--eeecc-ccC
Q 016570 249 IILSGVSRTGKTPLSIYLA---------QKG-YK--VANVP-IVM 280 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA---------~~G-yK--VAN~P-LVp 280 (387)
+++.|..|||||=.++.++ ..| .+ ++|++ |..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~ 52 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI 52 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc
Confidence 5789999999999999864 245 33 58887 543
No 229
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=45.64 E-value=7 Score=34.59 Aligned_cols=46 Identities=4% Similarity=0.008 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHhh-h-CCCCcEEeCCCccHHHHHHHHHHHHhcc
Q 016570 328 SEMDYVREELEFAGRIFA-Q-NPVWPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 328 A~~e~I~~EL~~A~~lf~-k-~~g~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
.+.+.|++.|..+.+-+. . ..+|..|=|++ ..||+.+.+.+++...
T Consensus 161 ~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~-~~~ea~~~~~~ii~~~ 208 (218)
T 1z6g_A 161 ENQEQIQKRMEQLNIELHEANLLNFNLSIIND-DLTLTYQQLKNYLLNS 208 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSCCSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcccCCCEEEECC-CHHHHHHHHHHHHHHH
Confidence 345667666665543322 0 01578887777 6899999988888654
No 230
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=45.36 E-value=9.2 Score=37.13 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
|+|+|.|++||+=|...|..+|++.-
T Consensus 147 vl~~G~sG~GKSt~a~~l~~~g~~lv 172 (314)
T 1ko7_A 147 VLITGDSGIGKSETALELIKRGHRLV 172 (314)
T ss_dssp EEEEESTTSSHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCCCHHHHHHHHHhcCCcee
Confidence 99999999999999999999998754
No 231
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.33 E-value=7.1 Score=35.82 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016570 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
++|.|.++||||-+.-.||+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999843
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=45.22 E-value=35 Score=35.33 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=47.3
Q ss_pred EcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhh-hCCCCCCCC
Q 016570 164 TLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTI-KQDDGALPQ 242 (387)
Q Consensus 164 Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFav-khDDG~~~~ 242 (387)
.-+|.++.+.|+..--+.+| .+++..-+++.|.+.+...-. .++ ..+...-. +.|.--+ ..+++.+..
T Consensus 221 ~~ide~~l~el~~~Ll~aDv-~~~~~~~l~~~l~~~~~~~~~-----~~~--~~~~~~l~---~~l~~~l~~~~~~Isl~ 289 (503)
T 2yhs_A 221 KKIDDDLFEELEEQLLIADV-GVETTRKIITNLTEGASRKQL-----RDA--EALYGLLK---EEMGEILAKVDEPLNVE 289 (503)
T ss_dssp CBCSHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHTC-----CBG--GGHHHHHH---HHHHHHHHTTBCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhccC-----CCH--HHHHHHHH---HHHHHHhCCCCCCceee
Confidence 33567777777766665555 445556666666543321110 111 01111001 1111111 124445443
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~ 268 (387)
+..-. |.|||+|++|||=|.--||.
T Consensus 290 -i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 290 -GKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp -SCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred -ccCCeEEEEECCCcccHHHHHHHHHH
Confidence 33333 66999999999999888874
No 233
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=45.14 E-value=17 Score=29.95 Aligned_cols=22 Identities=18% Similarity=-0.043 Sum_probs=19.6
Q ss_pred CcEEeCCCccHHHHHHHHHHHH
Q 016570 350 WPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 350 ~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
.-+||++++++||++..|++.+
T Consensus 155 d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 155 DVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp SEEEETTSSCHHHHHHHHHTTC
T ss_pred cEEEECCCCCHHHHHHHHHHHh
Confidence 5689999999999999998765
No 234
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=45.13 E-value=8.4 Score=35.86 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=20.9
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~ 268 (387)
+|..-. ++|.|.+++|||-+++.||.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444444 67889999999999999994
No 235
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=45.04 E-value=7.3 Score=33.71 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceee
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVA 274 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~----~GyKVA 274 (387)
++..-. ++|+|.+++|||=+++.+|. .|.+|.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~ 55 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGI 55 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 344433 57889999999999988762 455554
No 236
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=44.80 E-value=36 Score=33.85 Aligned_cols=26 Identities=8% Similarity=0.033 Sum_probs=20.7
Q ss_pred CCCcCcE-EEEccCCCCCChhhHHhhh
Q 016570 243 NLQKADI-ILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 243 ~L~~ADI-VLvGVSRTsKTPlSmYLA~ 268 (387)
||..-++ +|.|.+++|||=+++-+|.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4555554 5679999999999999984
No 237
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.73 E-value=8.6 Score=38.88 Aligned_cols=56 Identities=32% Similarity=0.425 Sum_probs=40.4
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeecc
Q 016570 218 LSEEYFRRIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANVP 277 (387)
Q Consensus 218 ld~~YF~RIeAIeFavkhDD-----G~~~~~L~~ADIVLvGVSRTsKTPlSmYLA-~~GyKVAN~P 277 (387)
+++.--.=.++|+|.++|-+ |..|. -=|+|.|+++||||=+.--+| ..|+...++.
T Consensus 186 l~~~k~~l~e~v~~pl~~p~~f~~~g~~~p----rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 186 LTEQIRELREVIELPLKNPEIFQRVGIKPP----KGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 33444444588999999876 55442 238999999999999999999 5576655543
No 238
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=44.61 E-value=5 Score=34.56 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=19.0
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
=|+|+|-+++|||-|...|+.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998883
No 239
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=44.57 E-value=9 Score=34.39 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=22.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
|++-|++++|||=++-.|+ .+|++|.
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 8899999999999998887 3577764
No 240
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=44.50 E-value=7.6 Score=33.71 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=18.5
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA 267 (387)
.+.+-. ++|+|.|++|||=|.--|+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 455555 5599999999999988887
No 241
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=44.38 E-value=15 Score=36.24 Aligned_cols=43 Identities=28% Similarity=0.198 Sum_probs=29.3
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016570 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
.+++.+.++|.+--.-....--=|+|.|.++||||=+.-.+|+
T Consensus 147 ~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 147 KEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp HHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3567777777653221011112489999999999999999995
No 242
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=44.24 E-value=10 Score=34.66 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=18.0
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016570 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
+||+.+. +|...+++- ||+.|++++|||=++-.|++
T Consensus 12 ~~~~~~~----~~~m~~g~~---I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 12 LEAQTQG----PGSMARGKF---ITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp ---------------CCCCE---EEEECCC---CHHHHHHHHH
T ss_pred HHHHHhc----CccccCCeE---EEEECCCCCCHHHHHHHHHH
Confidence 4555442 455555543 99999999999999998884
No 243
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=44.21 E-value=24 Score=34.83 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=21.5
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhhc
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~~ 269 (387)
||..-+ ++|.|.+++|||-+++-+|..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 566666 567799999999999999843
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=43.99 E-value=9.3 Score=38.43 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
|+++|.+++|||-++.-|| ..|.||.
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 6788999999999998888 3466664
No 245
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=43.94 E-value=8.3 Score=39.63 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=24.0
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeeec
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ----KGYKVANV 276 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~----~GyKVAN~ 276 (387)
=|+++|..++|||=|+.-||. +|+||+=+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 388999999999999988883 48988633
No 246
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=43.90 E-value=9.7 Score=33.73 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhhhc--Ccee
Q 016570 249 IILSGVSRTGKTPLSIYLAQK--GYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~--GyKV 273 (387)
|++-|.+++|||=++-.||++ |+.+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 789999999999999999954 6654
No 247
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=43.69 E-value=18 Score=30.43 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCC---CEEEEEcCC----H---------------HHHHHHHHHHHHc-CCCEeecchHHH
Q 016570 145 EQLMVIIKQAAKDG---AMLVYTLAD----P---------------SMAESAKKACELW-GIPSTDVLGPIT 193 (387)
Q Consensus 145 e~l~~ii~~a~~~~---~iV~~Tlvd----~---------------elr~~l~~~~~~~-gi~~vDllgp~i 193 (387)
+.+..+++.+.+.+ .||+.|+.. + ++.+.+++.|+++ |++++|+...+.
T Consensus 109 ~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~~iD~~~~~~ 180 (214)
T 2hsj_A 109 NNLEAIIQSVARDYPLTEIKLLSILPVNEREEYQQAVYIRSNEKIQNWNQAYQELASAYMQVEFVPVFDCLT 180 (214)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCCCCCCSGGGHHHHTTCCHHHHHHHHHHHHHHHTTCTTEEEECCGGGSB
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCCCcccccccccccccHHHHHHHHHHHHHHHHHcCCCEEEEhHHHHh
Confidence 44566666665443 366666542 1 6788999999999 999999987654
No 248
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=43.51 E-value=9.1 Score=35.33 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=22.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc----Cceeeec
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK----GYKVANV 276 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~----GyKVAN~ 276 (387)
-++|.|.++||||=+.-.+|+. |+++.-+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i 71 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS 71 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 3899999999999999888843 5655443
No 249
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=43.34 E-value=8.8 Score=30.99 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=26.5
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhccc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r~ 375 (387)
.++++...+ ||+++-++ +..|+|.-..|.+.+.+++
T Consensus 135 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 135 DAYKFAGQM-GIQLFETSAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp HHHHHHHHH-TCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 455666675 89999876 4569999888888776554
No 250
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=43.04 E-value=9.6 Score=30.23 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCc-eeeecc
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGY-KVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~Gy-KVAN~P 277 (387)
|+++|-+++|||=+.-.|.+... .+.++|
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~ 33 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVP 33 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCCC-------
T ss_pred EEEECCCCCCHHHHHHHHhCCCeeeccCCC
Confidence 79999999999999988885432 244443
No 251
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=43.04 E-value=9.6 Score=30.44 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=25.7
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhcc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r 374 (387)
.++++.+++ ||+++-++ +..|+|.-..|.+.+.++
T Consensus 129 ~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 129 QGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHH-TCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445566665 89998875 457999998888877654
No 252
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=42.85 E-value=4.5 Score=35.03 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=20.1
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA 267 (387)
||..-+ ++|.|.+++|||=+++-+|
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 555554 5778999999999999876
No 253
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=42.58 E-value=9.6 Score=33.61 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=25.1
Q ss_pred CcCcEEEEccCCCCCChhhHHhhh---cCceeeec
Q 016570 245 QKADIILSGVSRTGKTPLSIYLAQ---KGYKVANV 276 (387)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSmYLA~---~GyKVAN~ 276 (387)
..-=++++|-.++|||=++..||. .|+||+=+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vv 47 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV 47 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 334578899999999999988874 48888644
No 254
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=42.38 E-value=11 Score=35.37 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=16.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cC
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KG 270 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~G 270 (387)
|.|-|.|+||||=++-+|++ .|
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 77899999999999999995 56
No 255
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=42.17 E-value=23 Score=31.31 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=13.3
Q ss_pred CccEEEEE-eCChHHHHHHHHHHHHcc
Q 016570 96 EGKSIYMV-SDGTGWTAEHAVNAALGQ 121 (387)
Q Consensus 96 ~~~~IfiV-SDsTGeTAe~v~~AaL~Q 121 (387)
.|..|-|+ -||.|-| ++++.+...
T Consensus 19 ~g~~i~i~G~~GsGKS--Tl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKT--TYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHH--HHHHTTGGG
T ss_pred CceEEEEECCCCCCHH--HHHHHHHhc
Confidence 34444343 6888876 466654443
No 256
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=42.08 E-value=10 Score=35.41 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.5
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceee
Q 016570 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
--|++.|..++|||=+++-|| ++|++|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 348999999999999977666 5799985
No 257
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.86 E-value=10 Score=38.32 Aligned_cols=47 Identities=30% Similarity=0.369 Sum_probs=34.0
Q ss_pred hhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 226 IEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 226 IeAIeFavkhDD-----G~~~~~L~~ADIVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
.++|++-++|-+ |..+. -=|+|.|+++||||=+.--+| +.|....++
T Consensus 194 ~e~v~~pl~~pe~f~~~g~~~p----rGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 194 VEAIVLPMKRADKFKDMGIRAP----KGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp HHHTHHHHHCSHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHhCHHHHHhCCCCCC----CeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 367888888765 44321 238999999999999999999 556554443
No 258
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=41.61 E-value=10 Score=34.73 Aligned_cols=66 Identities=18% Similarity=0.083 Sum_probs=34.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC-----HHHHHHHHHHHHHHhhhCC-CCcEEeCCCccHHHHHH
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE-----MDYVREELEFAGRIFAQNP-VWPVIEVTGKAIEETAA 365 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~-----~e~I~~EL~~A~~lf~k~~-g~pvIDVT~kSIEEtAa 365 (387)
.|+.+|=|+++|+...+ |+ +. ..|-. .++|++- -.+++++.+ .|-+||. ++++||+ +
T Consensus 145 ~PDl~I~Ldv~~e~~~~----Ri---~r-----dr~E~~~~e~~~rv~~~---y~~la~~~~~~~~vIDa-~~sieeV-~ 207 (223)
T 3ld9_A 145 YPDITFIIDVDINESLS----RS---CK-----NGYEFADMEFYYRVRDG---FYDIAKKNPHRCHVITD-KSETYDI-D 207 (223)
T ss_dssp CCSEEEEEECC----------------------------CHHHHHHHHHH---HHHHHHHCTTTEEEEES-SCSSSCC-C
T ss_pred CCCeEEEEeCCHHHHHH----Hh---cc-----CccccchHHHHHHHHHH---HHHHHHHCCCCEEEEcC-CCCHHHH-H
Confidence 35678999999998765 22 10 11322 2233322 223333322 5899996 5799999 9
Q ss_pred HHHHHHhcc
Q 016570 366 VVLRLYHDR 374 (387)
Q Consensus 366 ~Il~~~~~r 374 (387)
.|.+.+.+.
T Consensus 208 ~I~~~l~~~ 216 (223)
T 3ld9_A 208 DINFVHLEV 216 (223)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 259
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=41.57 E-value=9 Score=35.23 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
-++|.|.+|||||=+.-.+++
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 260
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=41.45 E-value=8.6 Score=31.80 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016570 238 GALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 238 G~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
+...+++.+--|+++|-+++|||=|.-.|.+.
T Consensus 13 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp ------CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccccccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 34455667778999999999999999998854
No 261
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=41.41 E-value=9.1 Score=38.22 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=69.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC---C---CCCCc----cccc---------------------cCCCc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM---G---VELPK----SLFQ---------------------VDPEK 295 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp---~---v~lP~----eLf~---------------------v~~~K 295 (387)
++|.|||.+.+|||=|.--|+..--+++++|+.- . +..+. .+++ +.+-.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 8999999999999988777775545788887532 0 11110 0111 11111
Q ss_pred --EEEEecC---hhHHHHHHHHHHhh---c-CCCCC---CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCc---cH
Q 016570 296 --VFGLTIN---PLVLQSIRKARARS---L-GFRDE---IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGK---AI 360 (387)
Q Consensus 296 --I~GLTId---PerL~~IR~eRlk~---l-Gl~~~---~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~k---SI 360 (387)
++=++++ ++.|..+.++|..- | ..+.- ...+-.+. +.++...+.+++. ++++|-+|.+ .|
T Consensus 238 ~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~-g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 238 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE----EAVKALADALARE-GLAVLPVSALTGAGL 312 (416)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH----HHHHHHHHHHHTT-TSCEEECCTTTCTTH
T ss_pred hhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH----HHHHHHHHHHHhc-CCeEEEEECCCccCH
Confidence 2222332 34566676666531 1 10000 01111111 3445556666675 8999988754 68
Q ss_pred HHHHHHHHHHHhccc
Q 016570 361 EETAAVVLRLYHDRK 375 (387)
Q Consensus 361 EEtAa~Il~~~~~r~ 375 (387)
+|.-..|.+.+....
T Consensus 313 ~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 313 PALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999998886543
No 262
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=41.37 E-value=9.7 Score=33.02 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=21.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
+.|+|.+++|||=|.--|+ ..++.+..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~g~ 31 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAIGF 31 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCCCE
Confidence 6899999999999988888 445544443
No 263
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=41.27 E-value=12 Score=34.48 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=18.4
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|+|.++||||=|.--||.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999888883
No 264
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=41.05 E-value=91 Score=26.79 Aligned_cols=30 Identities=10% Similarity=0.292 Sum_probs=21.5
Q ss_pred HhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016570 343 IFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 343 lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
.|++.-.|-+||. ++++||+...|++.+..
T Consensus 190 ~y~~~~~~~~id~-~~~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 190 FYKKTGIWAGVDA-SQPPATVWADILNKLGK 219 (220)
T ss_dssp HHHHHTCEEEEET-TSCHHHHHHHHHHHHTC
T ss_pred HHHhCCCEEEEEC-CCCHHHHHHHHHHHHhc
Confidence 4543113677885 47999999999998853
No 265
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=40.97 E-value=8.7 Score=34.60 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=22.5
Q ss_pred cEEEEccCCCCCChhhHHhhhc--Cceee
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK--GYKVA 274 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~--GyKVA 274 (387)
=|+|.|..+||||=++-.||++ |+.+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3899999999999999999954 65554
No 266
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=40.95 E-value=9.2 Score=34.67 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|+|.++||||=|.-.||+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 99999999999999988884
No 267
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=40.90 E-value=21 Score=35.17 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=40.7
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccC--------CCCCCccccccCCCcEEEEecChhHHHH
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM--------GVELPKSLFQVDPEKVFGLTINPLVLQS 308 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~PLVp--------~v~lP~eLf~v~~~KI~GLTIdPerL~~ 308 (387)
++..|-.++|||-+|.-|| +.|+||.=+=. | ++++.....++. .-+.++.|||+...+
T Consensus 5 ~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~~~~~~~~~~~~~v~-~~L~~~eid~~~~~~ 74 (374)
T 3igf_A 5 LTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPLLLEQTLTPDPQQIA-PNLEVVQFQSSVLLE 74 (374)
T ss_dssp EEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHHHHTSCCCSSCEEEE-TTEEEEECCHHHHHH
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHHhhCCCCCCCccccc-ccccccccCHHHHHH
Confidence 4567888999999987665 78999976666 5 344333333332 358899999987665
No 268
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=40.77 E-value=8.2 Score=31.65 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=25.4
Q ss_pred HHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhcc
Q 016570 339 FAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHDR 374 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~r 374 (387)
.++++.+++ ||+++-++. ..|+|.-..|++.+.++
T Consensus 135 ~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 135 RGEKLALDY-GIKFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHH-TCEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 345566675 899998875 47888888888776554
No 269
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.64 E-value=9.2 Score=35.72 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=27.5
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016570 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
++.+.++++. |.-+ -++|.|.++||||-+...||+.
T Consensus 34 ~~~L~~~i~~--g~~~------~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 34 ITTVRKFVDE--GKLP------HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHT--TCCC------CEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCc------eEEEECCCCCCHHHHHHHHHHH
Confidence 4567777775 3222 2899999999999999999953
No 270
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=40.29 E-value=11 Score=31.30 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=21.6
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc-eeeecc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGY-KVANVP 277 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~Gy-KVAN~P 277 (387)
-|+|||.+.+|||=|--.|+.... .+.++|
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~ 36 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIA 36 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSST
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceeeCCC
Confidence 489999999999987777774322 344444
No 271
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=40.19 E-value=7.8 Score=38.06 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=26.2
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
-|.|||.+.+|||-|---|.+....++|||+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~ 34 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFA 34 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCc
Confidence 37899999999998877777655788999864
No 272
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=39.97 E-value=19 Score=30.22 Aligned_cols=15 Identities=0% Similarity=-0.356 Sum_probs=11.7
Q ss_pred CcEEEEecChhHHHH
Q 016570 294 EKVFGLTINPLVLQS 308 (387)
Q Consensus 294 ~KI~GLTIdPerL~~ 308 (387)
..+|-|+.+++.+.+
T Consensus 114 ~~~v~L~~~~e~~~~ 128 (186)
T 2yvu_A 114 FLEIYVKASLEEVIR 128 (186)
T ss_dssp EEEEEEECCHHHHHH
T ss_pred eEEEEEeCCHHHHHH
Confidence 457889999988765
No 273
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=39.72 E-value=12 Score=36.49 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=45.8
Q ss_pred cchHHHHHHHHHhCCCCCCCCCCCCCCCCCCc-HHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHH
Q 016570 188 VLGPITEAIASHLGVSPSGLPRGAPGRNFPLS-EEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIY 265 (387)
Q Consensus 188 llgp~i~~le~~lG~~p~~~~~~~pG~~~~ld-~~YF~RIeAIeFavkhDDG~~~~~L~~AD-IVLvGVSRTsKTPlSmY 265 (387)
.|...+..|++.+|..... .-|-..... ...---+..++..+. ..+|..-. ++|.|.+++|||-+++-
T Consensus 13 ~l~~~~~~i~~~~~~~~~~----~l~~~~~~~~~~i~TG~~~LD~~Lg------~GGl~~G~ii~I~G~pGsGKTtLal~ 82 (356)
T 1u94_A 13 ALAAALGQIEKQFGKGSIM----RLGEDRSMDVETISTGSLSLDIALG------AGGLPMGRIVEIYGPESSGKTTLTLQ 82 (356)
T ss_dssp HHHHHHHHHHHHHCTTSSC----CTTCCCBCCCCEECCSCHHHHHHTS------SSSEETTSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCce----EccccccccCCcccCCCHHHHHHhc------cCCccCCeEEEEECCCCCCHHHHHHH
Confidence 4667778888888865421 001000000 001111334554442 13555555 57789999999999999
Q ss_pred hhh----cCceeeeccc
Q 016570 266 LAQ----KGYKVANVPI 278 (387)
Q Consensus 266 LA~----~GyKVAN~PL 278 (387)
||. .|.+|+=+-+
T Consensus 83 la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 83 VIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHHHTTCCEEEEES
T ss_pred HHHHHHHCCCeEEEEeC
Confidence 883 5777775544
No 274
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=39.48 E-value=9.4 Score=34.92 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=23.1
Q ss_pred cEEEEccCCCCCChhhHHhhh-----cCceeee
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-----KGYKVAN 275 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-----~GyKVAN 275 (387)
=|++.|++++|||=++-.|++ .|++|.-
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 389999999999999988884 6776654
No 275
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=39.25 E-value=13 Score=31.99 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=20.4
Q ss_pred EEEEcc-CCCCCChhhHHhh----hcCceeee
Q 016570 249 IILSGV-SRTGKTPLSIYLA----QKGYKVAN 275 (387)
Q Consensus 249 IVLvGV-SRTsKTPlSmYLA----~~GyKVAN 275 (387)
|.+.|- .++|||-+|+-|| ++|+||.=
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 344554 6899999988776 78999973
No 276
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=39.15 E-value=9.7 Score=38.06 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=18.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
-|.|||.+.+|||=|---|......++|+|.+
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~t 55 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNSQASAENFPFC 55 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCcc
Confidence 49999999999998877777666799999965
No 277
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=39.00 E-value=13 Score=34.47 Aligned_cols=29 Identities=24% Similarity=0.117 Sum_probs=22.7
Q ss_pred EEEEccCCCCCChhhHHhhhc-----Cceeeecc
Q 016570 249 IILSGVSRTGKTPLSIYLAQK-----GYKVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~-----GyKVAN~P 277 (387)
++|.|.+|||||=+.-.+++. ++.+.-+.
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 899999999999999988832 45555443
No 278
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=38.98 E-value=14 Score=33.62 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=26.7
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~P 277 (387)
-|-|.|-.+||||=.|=+|+.+|+.|-+-=
T Consensus 11 ~iglTGgigsGKStv~~~l~~~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAARGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCcEEECc
Confidence 389999999999999999999999887643
No 279
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=38.84 E-value=7.6 Score=31.54 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=25.2
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhccc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r~ 375 (387)
.++++.+++ ||+++-++ +..|+|.-..|.+.+.++.
T Consensus 138 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 138 DGEKLAKEY-GLPFMETSAKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHH-TCCEEECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 345666665 89998875 4578898888888876554
No 280
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=38.62 E-value=13 Score=29.99 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=21.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceee
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
.-|+++|-+++|||=|.-.|.+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~ 35 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQ 35 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 4699999999999999888875444333
No 281
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=38.53 E-value=7.7 Score=38.39 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=35.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccc
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSL 288 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eL 288 (387)
.|+|.|||-.-+||+-|-=-|.+..-.|+|||+.---+.|..+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~ 114 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI 114 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE
Confidence 4899999999999999988888777999999988644444443
No 282
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=38.24 E-value=11 Score=31.54 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.5
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
-|+|||.|++|||=|.-.|+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999998887774
No 283
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=37.98 E-value=6.4 Score=34.31 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=23.3
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~PL 278 (387)
+.|+|.|++|||=|.--|+ ..||++..|=+
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 6799999999999887776 24777766544
No 284
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=37.90 E-value=10 Score=30.56 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=20.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
--|+++|-+.+|||=|.-.|.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 459999999999999998888543
No 285
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.64 E-value=15 Score=38.62 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.-++|+|.++||||=+.-.||+.
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999965
No 286
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=37.62 E-value=24 Score=33.17 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=41.2
Q ss_pred EEEEccCCCCCChhhHHh----hhcCceeeeccccC--------CCCCCccccccCCCcEEEEecChhHHHHHHHHHH
Q 016570 249 IILSGVSRTGKTPLSIYL----AQKGYKVANVPIVM--------GVELPKSLFQVDPEKVFGLTINPLVLQSIRKARA 314 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYL----A~~GyKVAN~PLVp--------~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRl 314 (387)
+|.-|-.++|||-++.-| |++|+||.=|=+=| +.++.....++ ...+.++.+||+...+--.+++
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v-~~~l~~~~~d~~~~~~~~~~~~ 93 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKI-TENLYAVEIDPEVAMEEYQAKL 93 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTSCCCSSCEEE-ETTEEEEECCHHHHHHHHHHHC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHhCCcCCCCCccC-CCCceeeccChHHHHHHHHHHH
Confidence 566688999999988655 47899996443333 33322222222 2347888999988766444443
No 287
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=37.59 E-value=11 Score=34.41 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhh-----hcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLA-----QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-----~~GyKVA 274 (387)
++|+|.+++|||=|..-|| +.|.+|.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 5689999999999998777 2375553
No 288
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=37.54 E-value=14 Score=33.90 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccC
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM 280 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~PLVp 280 (387)
|.+.|-.++|||-+++-|| ++|+||.=|=+=|
T Consensus 44 I~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 44 FAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred EEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4555999999999987655 6899997554433
No 289
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.51 E-value=13 Score=37.84 Aligned_cols=54 Identities=28% Similarity=0.385 Sum_probs=38.1
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeee
Q 016570 218 LSEEYFRRIEAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (387)
Q Consensus 218 ld~~YF~RIeAIeFavkhDD-----G~~~~~L~~ADIVLvGVSRTsKTPlSmYLA-~~GyKVAN 275 (387)
|++.--.=.|+|+|-++|-+ |..+. -=|+|.|+++||||=+.--+| +.|...-+
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~p----rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPP----KGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCC----SEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 44444455578888888865 43321 238999999999999999999 45654433
No 290
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=37.47 E-value=14 Score=29.72 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.9
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhhc
Q 016570 244 LQKADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 244 L~~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
+.+.-|+++|-+.+|||=|.-.|.+.
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcC
Confidence 44567999999999999999888743
No 291
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=37.34 E-value=13 Score=31.41 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=20.8
Q ss_pred ccCCCCCChhhHHhh----hcCceeeeccccC
Q 016570 253 GVSRTGKTPLSIYLA----QKGYKVANVPIVM 280 (387)
Q Consensus 253 GVSRTsKTPlSmYLA----~~GyKVAN~PLVp 280 (387)
+-.++|||-+++.|| ++|+||.=+=+=|
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 456799999998776 6899987554433
No 292
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=37.14 E-value=14 Score=35.77 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHHh
Q 016570 188 VLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIYL 266 (387)
Q Consensus 188 llgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD-IVLvGVSRTsKTPlSmYL 266 (387)
.|...+..|++.+|..........+ +.-....---+..++..+. ..+|..-. ++|.|.++||||-+++-|
T Consensus 11 ~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~~~i~TG~~~LD~~Lg------~GGl~~G~iv~I~G~pGsGKTtLal~l 81 (349)
T 2zr9_A 11 ALELAMAQIDKNFGKGSVMRLGEEV---RQPISVIPTGSISLDVALG------IGGLPRGRVIEIYGPESSGKTTVALHA 81 (349)
T ss_dssp HHHHHHHHHHHHHCTTSSCCTTCCC---CCCCCEECCSCHHHHHHTS------SSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCceeccccc---cccCCccccCCHHHHHHhc------cCCccCCeEEEEECCCCCCHHHHHHHH
Confidence 3566777777777765311000000 0000001111344555542 13555555 677899999999999998
Q ss_pred hh----cCceeeecc
Q 016570 267 AQ----KGYKVANVP 277 (387)
Q Consensus 267 A~----~GyKVAN~P 277 (387)
|. .|.+|+=+-
T Consensus 82 a~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 82 VANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHHTTCCEEEEE
T ss_pred HHHHHhCCCeEEEEE
Confidence 82 466666443
No 293
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=37.10 E-value=15 Score=29.14 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=22.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~P 277 (387)
--|+++|-+.+|||=|.-.|.+.-+.....|
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~ 34 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIP 34 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC
Confidence 3589999999999999888875444333333
No 294
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=37.10 E-value=15 Score=29.40 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
--|+++|-+++|||=|.-.|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999998888744
No 295
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=37.10 E-value=14 Score=33.61 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=26.4
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCCccccccCCC
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELPKSLFQVDPE 294 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLVp----~v~lP~eLf~v~~~ 294 (387)
|.|-|.++||||-++-.||. .||.+-+==++- +..++.+.|+-...
T Consensus 17 I~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~~~~~~E 67 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADE 67 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC------------
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHHHHHHHh
Confidence 78899999999999999994 688776533332 44555555543333
No 296
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=37.06 E-value=76 Score=27.70 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.3
Q ss_pred CCcEEeCCCccHHHHHHHHHHHH
Q 016570 349 VWPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 349 g~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
.|-+||. ++++||+...|++.+
T Consensus 201 ~~~~ida-~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 201 VYIELDG-EGSIDSIKDTLLAQL 222 (223)
T ss_dssp EEEEEET-TSCHHHHHHHHHHHH
T ss_pred eEEEEEC-CCCHHHHHHHHHHHh
Confidence 4889997 589999999999876
No 297
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=36.95 E-value=12 Score=33.81 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016570 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
++|.|.++||||-+.-.+|+.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 999999999999999999954
No 298
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=36.65 E-value=15 Score=29.86 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=26.5
Q ss_pred HHHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhcc
Q 016570 338 EFAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHDR 374 (387)
Q Consensus 338 ~~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~r 374 (387)
+.++++..+. |++++-++. ..|+|.-..|++.+.++
T Consensus 148 ~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 148 EEARELAEKY-GIPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp HHHHHHHHHH-TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3456667775 899998864 47899888888877654
No 299
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=36.64 E-value=13 Score=32.64 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=22.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~P 277 (387)
.--|+|||.+++|||=|.-.|...-....+.|
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 34599999999999988877775545555555
No 300
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=36.56 E-value=14 Score=35.49 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=17.0
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
|.|+|+|++|||=|.--||
T Consensus 132 i~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7799999999999887777
No 301
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=36.49 E-value=11 Score=37.30 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=20.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA 267 (387)
+|..-. +.|+|.|+||||-|++-||
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 454444 5688999999999999776
No 302
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=36.46 E-value=27 Score=34.31 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=46.3
Q ss_pred HHHHHHHHHHccCCCCccCCccceeEEec--c----ccCC-------HHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016570 110 TAEHAVNAALGQFEHCLVDRNCAVNTHLF--S----GIDD-------VEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (387)
Q Consensus 110 TAe~v~~AaL~QF~~~~v~~~~~~~~~~~--p----~V~t-------~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (387)
-|+.+++.+...+|++ +++.+.. | .+.+ .+.+.+++++ --+||-+.-+.+-|..+.+
T Consensus 89 Ka~aaa~~L~~inP~v------~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~----~DlVvd~tDn~~tR~lin~ 158 (340)
T 3rui_A 89 KAELAAASLKRIFPLM------DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKE----HDIIFLLVDSRESRWLPSL 158 (340)
T ss_dssp HHHHHHHHHHHHCTTC------EEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHH----CSEEEECCSSTGGGHHHHH
T ss_pred HHHHHHHHHHHhCCCC------EEEEEeccccccCcccchhhhhcCCHHHHHhhhcc----CCEEEecCCCHHHHHHHHH
Confidence 5677777777778874 2333321 1 1222 2333344432 3599999999999999999
Q ss_pred HHHHcCCCEeec
Q 016570 177 ACELWGIPSTDV 188 (387)
Q Consensus 177 ~~~~~gi~~vDl 188 (387)
.|.++|+|+|+.
T Consensus 159 ~c~~~~~plI~a 170 (340)
T 3rui_A 159 LSNIENKTVINA 170 (340)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCcEEEe
Confidence 999999999984
No 303
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=36.38 E-value=14 Score=29.38 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
--|+++|-+.+|||=|.-.|.+.-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999988777443
No 304
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=36.33 E-value=16 Score=29.08 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=20.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
--|+++|-+++|||=|.-.|.+..+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC
Confidence 3589999999999999988885433
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=35.92 E-value=12 Score=35.53 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=17.0
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
|.|+|+|++|||=|.-=||
T Consensus 105 i~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6789999999999988777
No 306
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=35.86 E-value=12 Score=33.48 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=19.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016570 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
++|.|.++||||-+.-.+|+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHH
Confidence 999999999999999999854
No 307
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=35.83 E-value=11 Score=35.38 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=17.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
|.|+|.|++|||-++--|+
T Consensus 34 i~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7799999999999998887
No 308
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=35.46 E-value=12 Score=34.44 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=20.7
Q ss_pred EEEEccCCCCCChhhHHhhh----cCce
Q 016570 249 IILSGVSRTGKTPLSIYLAQ----KGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyK 272 (387)
|++.|++++|||-++-.|++ .|++
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999883 4555
No 309
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=35.43 E-value=9.8 Score=32.08 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=20.3
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
--|+|+|-+.+|||=|.-.|.+.-+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTY 58 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4599999999999999887775433
No 310
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.40 E-value=12 Score=33.67 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016570 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
++|.|.++||||=+...+|+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 999999999999999999954
No 311
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=35.27 E-value=83 Score=27.62 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=61.8
Q ss_pred cEEEEEeCCh-HHH--HHHHHHHHHccCCCCccCCccceeEEecccc----CCHHHHH----HH---HHHHHhCC--CEE
Q 016570 98 KSIYMVSDGT-GWT--AEHAVNAALGQFEHCLVDRNCAVNTHLFSGI----DDVEQLM----VI---IKQAAKDG--AML 161 (387)
Q Consensus 98 ~~IfiVSDsT-GeT--Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V----~t~e~l~----~i---i~~a~~~~--~iV 161 (387)
..|=+|-=+| ..| .+.-.+++..+.|+. .+...++|+- .+..+.. .+ ++.+.+.| +||
T Consensus 7 ~~ig~i~p~~~~~~~e~~~~~~~~~~~~p~~------~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l~~~g~d~iv 80 (228)
T 2eq5_A 7 YTIGLIRVITLEDKEILNLHGRIIESAFPEL------KVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFEREGVDAII 80 (228)
T ss_dssp EEEEEEESSCCCCHHHHTHHHHHHHHHCTTE------EEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred eEEEEEeccCccCHHHHHHHHHHHHhhCCCC------eEEEEeCCCCchhccccccHHHhHHHHHHHHHHHHHCCCCEEE
Confidence 4455553333 222 334456667778874 3555777752 2322111 22 33334444 466
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhh-hhhhhhh
Q 016570 162 VYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRI-EAIEFTI 233 (387)
Q Consensus 162 ~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RI-eAIeFav 233 (387)
+..... - .+.+..+..++|++.+..|.+..... +| .--+ .-+-...+...|.+.+ ++..+.+
T Consensus 81 iaCnta-~---~~~~l~~~~~iPvi~i~~~~~~~a~~-~~-~rig----Vlat~~t~~~~~~~~~~~~~g~~~ 143 (228)
T 2eq5_A 81 ISCAAD-P---AVEKVRKLLSIPVIGAGSSVSALALA-YG-RRVG----VLNLTEETPKVIRSILGNNLIAED 143 (228)
T ss_dssp ECSTTC-T---THHHHHHHCSSCEEEHHHHHHHHHHT-TC-SSEE----EECSSSCCCHHHHHHHGGGEEEEE
T ss_pred EeCCch-H---HHHHHHHhCCCCEeCccHHHHHHHHH-hC-CeEE----EEecCcccHHHHHHHHHHHhCccc
Confidence 655444 2 23333345589999999999987653 44 2111 1111233446788878 7655444
No 312
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=35.25 E-value=43 Score=29.02 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCCEeecch
Q 016570 169 SMAESAKKACELWGIPSTDVLG 190 (387)
Q Consensus 169 elr~~l~~~~~~~gi~~vDllg 190 (387)
++.+.+++.|++.|+++||+..
T Consensus 177 ~~~~~~~~~a~~~~v~~iD~~~ 198 (232)
T 3dci_A 177 RLAPLYRKLAAELGHHFFDAGS 198 (232)
T ss_dssp THHHHHHHHHHHHTCEEEEGGG
T ss_pred HHHHHHHHHHHHhCCeEEcchH
Confidence 5788899999999999999753
No 313
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=35.16 E-value=15 Score=30.64 Aligned_cols=35 Identities=9% Similarity=-0.012 Sum_probs=25.2
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhcc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r 374 (387)
.++++.+++ +|+++-++ +..|+|.-..|++.+.++
T Consensus 148 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 148 EGEAFAREH-GLIFMETSAKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHH-TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 455666675 89998875 557888888888776554
No 314
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=35.12 E-value=87 Score=24.94 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=48.2
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCc----cCCccc---eeEEeccccCCHHHHHHHHHHHHhCCCEEEEEc--C
Q 016570 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCL----VDRNCA---VNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTL--A 166 (387)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~----v~~~~~---~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tl--v 166 (387)
+.+.+.|| |+|..|..+++.+... ++.. +|.+.. ..+.-+|.+. .+++.+++++..- -.|+-++ .
T Consensus 3 ~~~~vlIi--GaG~~g~~l~~~l~~~-~g~~vvg~~d~~~~~~g~~i~g~pV~g-~~~l~~~~~~~~i--d~viia~~~~ 76 (141)
T 3nkl_A 3 AKKKVLIY--GAGSAGLQLANMLRQG-KEFHPIAFIDDDRKKHKTTMQGITIYR-PKYLERLIKKHCI--STVLLAVPSA 76 (141)
T ss_dssp CCEEEEEE--CCSHHHHHHHHHHHHS-SSEEEEEEECSCGGGTTCEETTEEEEC-GGGHHHHHHHHTC--CEEEECCTTS
T ss_pred CCCEEEEE--CCCHHHHHHHHHHHhC-CCcEEEEEEECCcccCCCEecCeEEEC-HHHHHHHHHHCCC--CEEEEeCCCC
Confidence 34566666 5688889999987653 2321 111100 0112233343 4556666654321 2344444 3
Q ss_pred CHHHHHHHHHHHHHcCCCEeec
Q 016570 167 DPSMAESAKKACELWGIPSTDV 188 (387)
Q Consensus 167 d~elr~~l~~~~~~~gi~~vDl 188 (387)
+.+.++.+-+.|.++|+.+.-+
T Consensus 77 ~~~~~~~i~~~l~~~gv~v~~v 98 (141)
T 3nkl_A 77 SQVQKKVIIESLAKLHVEVLTI 98 (141)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEC
T ss_pred CHHHHHHHHHHHHHcCCeEEEC
Confidence 5677777888999999987644
No 315
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=35.09 E-value=16 Score=30.06 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=28.0
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhccccc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRKHK 377 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r~~~ 377 (387)
.++++.+++ +++++-++ +..|+|.-..|++.+.++...
T Consensus 143 ~~~~~~~~~-~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 143 TAKEFADSL-GIPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHT-TCCEEEECTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHc-CCcEEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 456677775 89999876 457999988998888776543
No 316
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=35.02 E-value=10 Score=31.25 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=23.0
Q ss_pred CCCCcCcEEEEccCCCCCChhhHHhhhcC
Q 016570 242 QNLQKADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 242 ~~L~~ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
+....--|+|+|-+.+|||=|.-.|.+..
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCC
Confidence 33445679999999999999988887543
No 317
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=35.00 E-value=15 Score=31.01 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.-|+|||.+++|||=|.-.|+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999998888743
No 318
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=34.99 E-value=14 Score=29.64 Aligned_cols=35 Identities=14% Similarity=0.018 Sum_probs=25.3
Q ss_pred HHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhcc
Q 016570 339 FAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHDR 374 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~r 374 (387)
.++++.++. +|+++-++. ..|+|.-..|++.+..+
T Consensus 131 ~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 131 EGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHT-TCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 455666775 899988764 56888888888777554
No 319
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=34.84 E-value=16 Score=30.60 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
--|+|+|-+.+|||-|.-.|.+.-+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~ 45 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKF 45 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 5699999999999999988875433
No 320
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=34.43 E-value=16 Score=28.69 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=19.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.-|+++|-+++|||=|.-.|.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999888743
No 321
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.26 E-value=14 Score=38.01 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=31.2
Q ss_pred hhhhhhhhhCCC-----CC-CCCCCCcCcEEEEccCCCCCChhhHHhh-hcCcee
Q 016570 226 IEAIEFTIKQDD-----GA-LPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKV 273 (387)
Q Consensus 226 IeAIeFavkhDD-----G~-~~~~L~~ADIVLvGVSRTsKTPlSmYLA-~~GyKV 273 (387)
.|+|+|-++|-+ |. -|+| |+|.|+++||||=+.-.+| ..|...
T Consensus 222 ~e~V~~pl~~pe~f~~~Gi~pprG-----ILLyGPPGTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 222 REVVELPLLSPERFATLGIDPPKG-----ILLYGPPGTGKTLCARAVANRTDATF 271 (467)
T ss_dssp HHHTHHHHHCHHHHHHHTCCCCSE-----EEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHhcCHHHHHHCCCCCCCc-----eEeeCCCCCcHHHHHHHHHhccCCCe
Confidence 356777777655 43 2333 8899999999999999999 445543
No 322
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=33.99 E-value=14 Score=34.86 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=27.3
Q ss_pred hhhhhhhhhCC--CCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016570 226 IEAIEFTIKQD--DGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 226 IeAIeFavkhD--DG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
++.+.++++.- .|..+ + -++|+|.++||||=|.-.+|+
T Consensus 34 ~~~l~~~i~~~~~~~~~~----~-~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 34 KKKLSLALEAAKMRGEVL----D-HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp HHHHHHHHHHHHHHTCCC----C-CEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC----C-eEEEECCCCCcHHHHHHHHHH
Confidence 56677777532 12221 2 289999999999999999994
No 323
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=33.91 E-value=14 Score=35.02 Aligned_cols=19 Identities=42% Similarity=0.441 Sum_probs=17.1
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
+.|||++++|||-|.--||
T Consensus 103 i~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6699999999999988777
No 324
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=33.89 E-value=13 Score=29.79 Aligned_cols=35 Identities=14% Similarity=-0.003 Sum_probs=25.2
Q ss_pred HHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhcc
Q 016570 339 FAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHDR 374 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~r 374 (387)
.++++.... +++++-++. ..|+|.-..|.+.+.++
T Consensus 128 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 128 EGRACAVVF-DCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHT-TCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 345566665 899987764 57888888888877654
No 325
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=33.68 E-value=11 Score=32.43 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=22.2
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
|.+-|-.++|||=++.-|| ++|+||.=|
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4557889999999988776 679999544
No 326
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.55 E-value=15 Score=39.38 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.8
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
-++|+|.++||||=+.-.||+.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 3799999999999999999954
No 327
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=33.55 E-value=14 Score=32.92 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cCc
Q 016570 249 IILSGVSRTGKTPLSIYLAQ-KGY 271 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~Gy 271 (387)
|-|+|.+++|||=++=.|+. .|.
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEECCCCCCHHHHHHHHHHHhch
Confidence 67999999999999999995 574
No 328
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=33.37 E-value=29 Score=32.71 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=21.9
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~P 277 (387)
-|+|||-+.+|||=|.-.|.+.- .+.++|
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~-~~~~~p 195 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE-IVTTIP 195 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC-CEEEEE
T ss_pred eEEEECCCCccHHHHHHHHhCCC-CCCccc
Confidence 49999999999998888877433 244455
No 329
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=33.36 E-value=45 Score=31.81 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=47.4
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccccC--------CCCCCccccccC-CC
Q 016570 228 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM--------GVELPKSLFQVD-PE 294 (387)
Q Consensus 228 AIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~PLVp--------~v~lP~eLf~v~-~~ 294 (387)
.++|.+....++.. +|.-|-.++|||-++.-|| ++|+||.=+=+=| +.++.....++. -.
T Consensus 15 ~~~~~~~~~~~~~i-------~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v~g~~ 87 (349)
T 3ug7_A 15 ITEKKLEKKDGTKY-------IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYD 87 (349)
T ss_dssp HHHHHHHSSCSCEE-------EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTCHHHHHHCSCCCSSCEECTTCS
T ss_pred hHHHhhcccCCCEE-------EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCCCCCcCcccccccc
Confidence 56676654333221 5666899999999886555 6799995333222 333333332322 13
Q ss_pred cEEEEecChhHHHHHHHHHH
Q 016570 295 KVFGLTINPLVLQSIRKARA 314 (387)
Q Consensus 295 KI~GLTIdPerL~~IR~eRl 314 (387)
.+....+|++...+--.++.
T Consensus 88 ~l~~~~id~~~~~~~~~~~~ 107 (349)
T 3ug7_A 88 NLYVVEIDPQKAMEEYKEKL 107 (349)
T ss_dssp SEEEEECCHHHHHHHHHHHH
T ss_pred ceeeeccCHHHHHHHHHHHH
Confidence 47788999987666444443
No 330
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=33.32 E-value=18 Score=36.60 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
-|+|.|.++||||=+.-.+|+.
T Consensus 240 ~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHHH
Confidence 3999999999999999999953
No 331
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=33.31 E-value=16 Score=29.79 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=27.0
Q ss_pred HHHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhccc
Q 016570 338 EFAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 338 ~~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~r~ 375 (387)
+.++++.++. +|+++-++. ..|+|.-..|++.+.++.
T Consensus 136 ~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 136 LEASRFAQEN-ELMFLETSALTGENVEEAFVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHT-TCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCEEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 3456667775 899998764 578898888888776554
No 332
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=33.29 E-value=17 Score=35.54 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=26.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~----~GyKVAN~PL 278 (387)
+|..-+ ++|.|.+++|||-+++-||. .|.+|+=+-+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 444444 56679999999999999883 4777765443
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=33.25 E-value=60 Score=26.32 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHH
Q 016570 328 SEMDYVREELEF 339 (387)
Q Consensus 328 A~~e~I~~EL~~ 339 (387)
.+.+.+.+++..
T Consensus 148 ~~~~~~~~~i~~ 159 (168)
T 2pt5_A 148 KPPEEVVKEILL 159 (168)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 467777776643
No 334
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=33.22 E-value=23 Score=38.01 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=28.6
Q ss_pred hhhhhhhhhCCCCCCCCCCCc-CcEEEEccCCCCCChhhHHhhh
Q 016570 226 IEAIEFTIKQDDGALPQNLQK-ADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~-ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
.+.+++.+.|.+--.--++.. --|+|+|.|+||||=+.-.||+
T Consensus 217 ~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 217 KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp HHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 356677777765211111111 1389999999999999999994
No 335
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=33.19 E-value=18 Score=31.80 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016570 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN 275 (387)
|.|.|.++||||-++--|| ..||..-+
T Consensus 9 I~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 7889999999999999999 56876554
No 336
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=33.09 E-value=3.4e+02 Score=26.15 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=87.7
Q ss_pred ccCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEEcCCHHH
Q 016570 94 AMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYTLADPSM 170 (387)
Q Consensus 94 ~~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~Tlvd~el 170 (387)
...++.|++|-|.-+.. ..++.-...+..+ ++++..+.||-=-+++++.+.|+++.++. +|+++-=.-+.+
T Consensus 36 ~~P~Lavilvg~dpaS~--~Yv~~k~k~~~~~----Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~i 109 (300)
T 4a26_A 36 RVPGLASIIVGQRMDSK--KYVQLKHKAAAEV----GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHL 109 (300)
T ss_dssp CCCEEEEEEESCCHHHH--HHHHHHHHHHHHT----TCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTS
T ss_pred CCceEEEEEeCCCHHHH--HHHHHHHHHHHHc----CCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCC
Confidence 34567888898775532 3333333333322 35678888998889999999999986654 566543212111
Q ss_pred --HHHHHHHHHHcCCCEeecchHHHHHHHHHhCC-CCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcC
Q 016570 171 --AESAKKACELWGIPSTDVLGPITEAIASHLGV-SPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKA 247 (387)
Q Consensus 171 --r~~l~~~~~~~gi~~vDllgp~i~~le~~lG~-~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~A 247 (387)
.+.++...-++ =+|-|+|+ +.-.-..|. .| |. +.-.-.-=|+.+++. .-.|..+
T Consensus 110 d~~~v~~~I~p~K---DVDG~~~~-N~G~l~~g~~~~--------~~---~PcTp~gv~~lL~~~--------~i~l~Gk 166 (300)
T 4a26_A 110 NENRAIEKIHPHK---DADALLPV-NVGLLHYKGREP--------PF---TPCTAKGVIVLLKRC--------GIEMAGK 166 (300)
T ss_dssp CHHHHHHTSCGGG---CTTCCSHH-HHHHHHCTTCCC--------SC---CCHHHHHHHHHHHHH--------TCCCTTC
T ss_pred CHHHHHhhCCccc---ccccCCcc-eEEEeecCCCcC--------CC---CCCCHHHHHHHHHHc--------CCCCCCC
Confidence 22222222233 34667775 222222332 22 21 122333344445442 1267779
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceee
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
.+++||-|+.==.|+++.|+++|..|-
T Consensus 167 ~vvVIG~s~iVG~p~A~lL~~~gAtVt 193 (300)
T 4a26_A 167 RAVVLGRSNIVGAPVAALLMKENATVT 193 (300)
T ss_dssp EEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEE
Confidence 999999999655699999999997654
No 337
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=32.99 E-value=17 Score=30.60 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=26.4
Q ss_pred HHHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhc
Q 016570 338 EFAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHD 373 (387)
Q Consensus 338 ~~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~ 373 (387)
+.|+.+..+. +|+++|++. ..++|.-..|.+.+.+
T Consensus 131 ~~a~~l~~~~-~~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 131 DEARAFAEKN-NLSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHT-TCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3478888884 999999865 4788888777776644
No 338
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=32.88 E-value=12 Score=31.93 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=25.4
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhcccc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRKH 376 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r~~ 376 (387)
.++++.+++ +|+++-++ +..|+|.=..|++.+..++.
T Consensus 152 ~~~~~a~~~-~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 152 EGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHT-TCEEEEEBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHh-CCEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 344556664 78888775 55788888888887765543
No 339
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=32.84 E-value=18 Score=30.04 Aligned_cols=35 Identities=6% Similarity=0.118 Sum_probs=25.6
Q ss_pred HHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhcc
Q 016570 339 FAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHDR 374 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~r 374 (387)
.++++.++. |++++-++. ..|+|.-..|++.+.++
T Consensus 149 ~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 149 DGRRLADDL-GFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHH-TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456666775 899998764 47899888888877543
No 340
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=32.64 E-value=18 Score=28.53 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcC
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
.--|+++|-+++|||=|.-.|.+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3469999999999999988888544
No 341
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=32.63 E-value=15 Score=33.39 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=19.4
Q ss_pred CCcCc-EEEEccCCCCCChhhHHhh
Q 016570 244 LQKAD-IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 244 L~~AD-IVLvGVSRTsKTPlSmYLA 267 (387)
|..-+ ++|+|.++||||=|.+-||
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 44444 6789999999999998887
No 342
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=32.62 E-value=19 Score=34.23 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=26.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
--|+|+|.+++|||=|.--|+..-..+.++|..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~ 200 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT 200 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCEEECCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCe
Confidence 459999999999999888888655667777754
No 343
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=32.20 E-value=61 Score=32.63 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=35.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARS 316 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~ 316 (387)
++++|..+||||=+.++.+.+=++.. .+++.+|..||-+-.--.++++ |+..
T Consensus 25 ~lV~a~aGsGKT~~l~~ri~~l~~~~---------------~~~~~~iL~ltft~~aa~e~~~-rl~~ 76 (647)
T 3lfu_A 25 LLVLAGAGSGKTRVLVHRIAWLMSVE---------------NCSPYSIMAVTFTNKAAAEMRH-RIGQ 76 (647)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTS---------------CCCGGGEEEEESSHHHHHHHHH-HHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHhC---------------CCChhhEEEEeccHHHHHHHHH-HHHH
Confidence 89999999999999876442101000 1245678888888888888875 5543
No 344
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=32.01 E-value=2.2e+02 Score=27.22 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=85.9
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEEcCCHHH-
Q 016570 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYTLADPSM- 170 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~Tlvd~el- 170 (387)
..++.|++|.|.-+.. ..++.-...+..+ ++++..+.||--.+++++.+.|+++.++. +|+++-=.-+.+
T Consensus 33 ~P~Lavilvg~dpaS~--~Yv~~k~k~~~~~----Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id 106 (285)
T 3p2o_A 33 ESCLAVILVGDNPASQ--TYVKSKAKACEEC----GIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHIC 106 (285)
T ss_dssp CCEEEEEEESCCHHHH--HHHHHHHHHHHHH----TCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSC
T ss_pred CCeEEEEEeCCCHHHH--HHHHHHHHHHHHc----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcC
Confidence 4567888898876542 2333333333222 24678888998889999999999886653 565543211111
Q ss_pred -HHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcE
Q 016570 171 -AESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADI 249 (387)
Q Consensus 171 -r~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADI 249 (387)
++.++...-++. +|-|+|+ +.-.-..|. |. |. +--.-.-=|+.+++. .-+|..+.+
T Consensus 107 ~~~v~~~I~p~KD---VDg~~~~-N~g~l~~g~-~~-------g~---~PcTp~gv~~lL~~~--------~i~l~Gk~v 163 (285)
T 3p2o_A 107 KDLILESIISSKD---VDGFHPI-NVGYLNLGL-ES-------GF---LPCTPLGVMKLLKAY--------EIDLEGKDA 163 (285)
T ss_dssp HHHHHHHSCGGGC---TTCCSHH-HHHHHHTTC-CS-------SC---CCHHHHHHHHHHHHT--------TCCCTTCEE
T ss_pred HHHHHhhCCcccc---cccCCHh-hhhhhhcCC-CC-------CC---CCCCHHHHHHHHHHh--------CCCCCCCEE
Confidence 222322222333 4667774 222222342 21 00 112222334444442 136788999
Q ss_pred EEEccCCCCCChhhHHhhhcCceee
Q 016570 250 ILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 250 VLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
++||-|+.==.|+++.|+++|..|.
T Consensus 164 vVvGrs~iVG~p~A~lL~~~gAtVt 188 (285)
T 3p2o_A 164 VIIGASNIVGRPMATMLLNAGATVS 188 (285)
T ss_dssp EEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred EEECCCchHHHHHHHHHHHCCCeEE
Confidence 9999999655699999999987653
No 345
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=31.83 E-value=23 Score=36.41 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=28.4
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016570 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
++.+.+++... .-++|+|.++||||=+.-.||+.
T Consensus 50 l~~l~~~i~~g----------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 50 VEVIKTAANQK----------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred HhhccccccCC----------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 47788888854 15999999999999999999953
No 346
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=31.56 E-value=18 Score=30.44 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhcc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r 374 (387)
.++++.+++ |++++-++ +..|+|.-..|++.+.++
T Consensus 135 ~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 135 VAKEFADAN-KMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHT-TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 445566675 89999886 457999998888877543
No 347
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.53 E-value=1e+02 Score=24.26 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=24.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeec
Q 016570 160 MLVYTLADPSMAESAKKACELWGIPSTDV 188 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDl 188 (387)
+|+..=..++....+...|++++||++.+
T Consensus 35 ViiA~D~~~~~~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 35 IIVAKNAPKEIKDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 45555577999999999999999998765
No 348
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=31.40 E-value=13 Score=38.35 Aligned_cols=25 Identities=16% Similarity=0.148 Sum_probs=21.9
Q ss_pred CcEEeCCCccHHHHHHHHHHHHhcc
Q 016570 350 WPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 350 ~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
--+||++..++||+++.|++.+..+
T Consensus 482 dI~IDTs~~s~eevV~~Il~~L~~~ 506 (511)
T 1g8f_A 482 DIQLESADEPISHIVQKVVLFLEDN 506 (511)
T ss_dssp SEECSSTTCCHHHHHHHHHHHHHHT
T ss_pred cEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4579999999999999999999753
No 349
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=31.28 E-value=17 Score=36.15 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=27.1
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc-eeeecccc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQKGY-KVANVPIV 279 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~Gy-KVAN~PLV 279 (387)
-+.|||.+.+|||-|---|..... .++|+|.+
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~t 54 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYA 54 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccccCCCce
Confidence 488999999999988777776666 89999965
No 350
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=31.27 E-value=19 Score=35.22 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=40.0
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCCCCCCC-cHHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHHh
Q 016570 189 LGPITEAIASHLGVSPSGLPRGAPGRNFPL-SEEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIYL 266 (387)
Q Consensus 189 lgp~i~~le~~lG~~p~~~~~~~pG~~~~l-d~~YF~RIeAIeFavkhDDG~~~~~L~~AD-IVLvGVSRTsKTPlSmYL 266 (387)
|...+..|++.+|...--. .-.....- -...---+..++.++. ..+|..-. +.|.|.+++|||-|++-|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~i~TG~~~LD~~Lg------~GGi~~G~i~~I~GppGsGKSTLal~l 81 (356)
T 3hr8_A 11 LEKALKRIEENFGKGSIMI---LGDETQVQPVEVIPTGSLAIDIATG------VGGYPRGRIVEIFGQESSGKTTLALHA 81 (356)
T ss_dssp HHHHHHHHHHHHCTTSSCC---TTCCSCCCCCCEECCSCHHHHHHTS------SSSEETTEEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcee---chhccccCCCceecCCCHHHHHHhc------cCCccCCcEEEEECCCCCCHHHHHHHH
Confidence 6778899999998764210 00000000 0001111345555553 13455444 456799999999999998
Q ss_pred h
Q 016570 267 A 267 (387)
Q Consensus 267 A 267 (387)
|
T Consensus 82 a 82 (356)
T 3hr8_A 82 I 82 (356)
T ss_dssp H
T ss_pred H
Confidence 8
No 351
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=31.23 E-value=19 Score=30.57 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=21.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCce
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYK 272 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyK 272 (387)
--|+|+|.+++|||=|.-.|.+.-+.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~ 38 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVR 38 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45999999999999999888865443
No 352
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=31.21 E-value=16 Score=35.79 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=17.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|.|||++++|||-|.--||.
T Consensus 160 i~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHh
Confidence 66999999999999887873
No 353
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=31.16 E-value=1.1e+02 Score=26.43 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=20.6
Q ss_pred CCcEEeCCCccHHHHHHHHHHHHhcc
Q 016570 349 VWPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 349 g~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
.|-+||.+ ++||+...|++++...
T Consensus 192 ~~~~id~~--~~~~v~~~i~~~l~~~ 215 (227)
T 1zd8_A 192 VLETFSGT--ETNKIWPYVYAFLQTK 215 (227)
T ss_dssp CEEEEECS--SHHHHHHHHHHHHTTT
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHhh
Confidence 47789987 9999999999999754
No 354
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=31.11 E-value=19 Score=29.71 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=21.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCc
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
.--|+++|.+++|||=|.-.|.+..+
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34699999999999999888886544
No 355
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=31.09 E-value=37 Score=29.44 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=56.5
Q ss_pred HHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCE-eecchH--HHHHHHHH--hCCCCCCCCCCCCCCC---C-CCc
Q 016570 151 IKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPS-TDVLGP--ITEAIASH--LGVSPSGLPRGAPGRN---F-PLS 219 (387)
Q Consensus 151 i~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~-vDllgp--~i~~le~~--lG~~p~~~~~~~pG~~---~-~ld 219 (387)
++.+.+.| .++++.....+.-+.+.+.|+++|+.+ ++++.| ..+.+... .|..-.. -.||.. . ...
T Consensus 70 ~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~---v~~g~~g~~~~~~~ 146 (211)
T 3f4w_A 70 SQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLA---VHTGTDQQAAGRKP 146 (211)
T ss_dssp HHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEE---EECCHHHHHTTCCS
T ss_pred HHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEE---EcCCCcccccCCCC
Confidence 55555555 588888877554455666788888865 466554 22333333 2332110 012211 0 113
Q ss_pred HHHHhhhhhh--hhhhhCCCCCCCCCCC-----cCcEEEEc
Q 016570 220 EEYFRRIEAI--EFTIKQDDGALPQNLQ-----KADIILSG 253 (387)
Q Consensus 220 ~~YF~RIeAI--eFavkhDDG~~~~~L~-----~ADIVLvG 253 (387)
-++.+++... +.-+.-+-|.+++++. -||.|++|
T Consensus 147 ~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 147 IDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp HHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 4677777654 4556667788877753 38888888
No 356
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=31.02 E-value=20 Score=30.36 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=22.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~P 277 (387)
--|+|+|-+.+|||=|.-.|.+.- ...++|
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~ 37 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQT 37 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-CCCBCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-cccccC
Confidence 359999999999999998887543 344444
No 357
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=30.92 E-value=16 Score=33.64 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|.|.++||||-+.-.+|+
T Consensus 41 ~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 358
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=30.89 E-value=1.7e+02 Score=22.83 Aligned_cols=59 Identities=7% Similarity=0.142 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcC-----CHHHHHHHHHHHHHcCCCE--eecc--hHHHHHHHHHhCCCC
Q 016570 146 QLMVIIKQAAKDGAMLVYTLA-----DPSMAESAKKACELWGIPS--TDVL--GPITEAIASHLGVSP 204 (387)
Q Consensus 146 ~l~~ii~~a~~~~~iV~~Tlv-----d~elr~~l~~~~~~~gi~~--vDll--gp~i~~le~~lG~~p 204 (387)
++.+.++++...+.+|+||-. .=-....+++...++||++ +|+. ......|.+..|...
T Consensus 6 ~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~t 73 (109)
T 3ipz_A 6 QLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPT 73 (109)
T ss_dssp HHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCC
Confidence 345567777777889999986 3334556666667777776 4553 355677888877653
No 359
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=30.65 E-value=19 Score=36.59 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|+|+|.++||||=+.-.+|+
T Consensus 52 vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999994
No 360
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=30.65 E-value=87 Score=25.87 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=33.4
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016570 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (387)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~ 203 (387)
+|+..=++| ++...+...|+++|||++-+.+ -..|....|..
T Consensus 40 ViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~s--k~eLG~a~g~k 82 (121)
T 2lbw_A 40 VVIAGDIWPADVISHIPVLCEDHSVPYIFIPS--KQDLGAAGATK 82 (121)
T ss_dssp EEECTTCSCTTHHHHHHHHHHHTCCCEEECCC--HHHHHHHHTCS
T ss_pred EEEeCCCCHHHHHHHHHHHHHhcCCcEEEECC--HHHHHHHhCCC
Confidence 455556777 5899999999999999998764 47888888854
No 361
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=30.46 E-value=34 Score=28.46 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.8
Q ss_pred cEEeCCCccHHHHHHHHHHHHhc
Q 016570 351 PVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 351 pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
-+||++++++||++..|++.+.+
T Consensus 153 ~vid~~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 153 LVLKTDSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp EEEETTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999865
No 362
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=30.42 E-value=26 Score=31.26 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.7
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
+.|+|.|++|||=|.--|+
T Consensus 25 ~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp EEEECCTTSSTTHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5699999999999987777
No 363
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=30.26 E-value=21 Score=29.88 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
--|+|+|-+.+|||=|.-.|.+.-+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~ 33 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSF 33 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4599999999999998888875433
No 364
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=30.21 E-value=22 Score=28.81 Aligned_cols=34 Identities=6% Similarity=-0.054 Sum_probs=24.5
Q ss_pred HHHHHhhhCCCC-cEEeCCC---ccHHHHHHHHHHHHhc
Q 016570 339 FAGRIFAQNPVW-PVIEVTG---KAIEETAAVVLRLYHD 373 (387)
Q Consensus 339 ~A~~lf~k~~g~-pvIDVT~---kSIEEtAa~Il~~~~~ 373 (387)
.+.++.+++ |+ +++-++. ..|+|.-..|++.+.+
T Consensus 143 ~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 143 QGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHhc-CCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 455666665 76 8988764 5789988888877643
No 365
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=30.02 E-value=18 Score=28.71 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|+++|-+++|||=|.-.|.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 89999999999999888874
No 366
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=29.75 E-value=18 Score=36.86 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|||+|.+++|||=++--||.
T Consensus 38 IvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999984
No 367
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=29.72 E-value=22 Score=30.15 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=26.1
Q ss_pred HHHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhcc
Q 016570 338 EFAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 338 ~~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r 374 (387)
+.++++.++. +|+++-++ +..|+|.-..|++.+.++
T Consensus 162 ~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 162 RQARELADKY-GIPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp HHHHHHHHHT-TCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3556667775 89998875 456888888888776554
No 368
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=29.67 E-value=16 Score=36.20 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.3
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
=|||+|.+++|||=++--||.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999994
No 369
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=29.66 E-value=1.2e+02 Score=29.50 Aligned_cols=150 Identities=16% Similarity=0.110 Sum_probs=84.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEE-cCCH--
Q 016570 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYT-LADP-- 168 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~T-lvd~-- 168 (387)
..++.|++|-|.-+... .++.-......+ ++.+..+.+|-=.|++++.+.|+++.++. +|+++- |-..
T Consensus 35 ~P~LavilvG~dpaS~~--Yv~~k~k~~~~~----Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~ 108 (301)
T 1a4i_A 35 TPRLAILQVGNRDDSNL--YINVKLKAAEEI----GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENS 108 (301)
T ss_dssp CCEEEEEEESCCHHHHH--HHHHHHHHHHHH----TCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSC
T ss_pred CCEEEEEEeCCChhHHH--HHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCc
Confidence 35678888877655432 222222111111 24678889999889999999999986654 566653 4211
Q ss_pred -HHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCC-CCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCC
Q 016570 169 -SMAESAKKACELWGIPSTDVLGPI-TEAIASHLGV-SPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQ 245 (387)
Q Consensus 169 -elr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~-~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~ 245 (387)
+-...+..-.-+++ ||=|.|. +..| +.|. .|.- .| -.= +||--.+++=+ -++.
T Consensus 109 id~~~i~~~I~p~KD---VDG~hp~N~G~l--~~g~~~~~~----~P-------cTp----~gi~~ll~~~~----i~l~ 164 (301)
T 1a4i_A 109 INTEEVINAIAPEKD---VDGLTSINAGRL--ARGDLNDCF----IP-------CTP----KGCLELIKETG----VPIA 164 (301)
T ss_dssp CCHHHHHHTSCGGGB---TTCCSHHHHHHH--HTTCCSSCC----CC-------HHH----HHHHHHHHTTT----CCCT
T ss_pred cCHHHHHhccCCCCC---ccCCChhhHHHH--hcCCCCCCc----cC-------chH----HHHHHHHHHcC----CCCC
Confidence 12333433334443 3667765 2222 2342 1211 11 111 22222233222 2688
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceee
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
.+.+++||-|++==.|++++|+++|-.|-
T Consensus 165 gk~vvVIG~s~iVG~p~A~lL~~~gAtVt 193 (301)
T 1a4i_A 165 GRHAVVVGRSKIVGAPMHDLLLWNNATVT 193 (301)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCeEE
Confidence 89999999999755789999999995544
No 370
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=29.66 E-value=19 Score=29.39 Aligned_cols=38 Identities=32% Similarity=0.344 Sum_probs=28.2
Q ss_pred HHHHHHhhhCCCC-cEEeCC---CccHHHHHHHHHHHHhcccc
Q 016570 338 EFAGRIFAQNPVW-PVIEVT---GKAIEETAAVVLRLYHDRKH 376 (387)
Q Consensus 338 ~~A~~lf~k~~g~-pvIDVT---~kSIEEtAa~Il~~~~~r~~ 376 (387)
+.++++++++ +| +++-++ +..|+|.-..|.+.+.++..
T Consensus 154 ~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 154 EMVRAVVDPE-GKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp HHHHHHHCTT-CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhc-CCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 4566777785 89 999886 55699988888887765543
No 371
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=29.62 E-value=17 Score=34.86 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=19.9
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016570 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA 267 (387)
++..-. +.|+|.++||||=|++-||
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 444443 5589999999999999988
No 372
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=29.42 E-value=19 Score=36.83 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=20.3
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
-|+|.|+++||||=++-+||+.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGG
T ss_pred eeEeecCchHHHHHHHHHHHHH
Confidence 6999999999999999999963
No 373
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=29.30 E-value=21 Score=28.85 Aligned_cols=35 Identities=14% Similarity=-0.054 Sum_probs=25.5
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhcc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r 374 (387)
.++++.+++ ||+++-++ +..|+|.-..|.+.+.+.
T Consensus 137 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 137 KHLRFCQEN-GFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHH-TCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHc-CCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 455666775 89999876 457888888888776543
No 374
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.26 E-value=16 Score=33.63 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|.|.++||||=+.-.||+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998886
No 375
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=29.21 E-value=48 Score=30.03 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=36.9
Q ss_pred CCCCCCCcCcEEEEc--cCCCCCChhhHHhh-hcCceeeeccccCCC
Q 016570 239 ALPQNLQKADIILSG--VSRTGKTPLSIYLA-QKGYKVANVPIVMGV 282 (387)
Q Consensus 239 ~~~~~L~~ADIVLvG--VSRTsKTPlSmYLA-~~GyKVAN~PLVp~v 282 (387)
.....++..++-+|| |=|+....+|+-.| ..|+++|=+||=.-+
T Consensus 112 ~~L~~~~~~~vYIIGGiVD~n~~K~lt~~~A~~~gi~taRLPi~~~i 158 (197)
T 4fmw_A 112 NILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNFV 158 (197)
T ss_dssp CBCCSCCTTSEEEEECCCCTTSSTTHHHHHHHHHTCEEEBCCCTTTC
T ss_pred hhhhccCCCCEEEEEEEEeCCCCcchhHHHHHHcCCCEEecccccee
Confidence 344568889999999 77888899999999 789999999995544
No 376
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=29.00 E-value=14 Score=32.69 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.4
Q ss_pred CcEEEEccCCCCCCh
Q 016570 247 ADIILSGVSRTGKTP 261 (387)
Q Consensus 247 ADIVLvGVSRTsKTP 261 (387)
-+++++|.++||||=
T Consensus 77 ~~~~i~g~TGsGKTt 91 (235)
T 3llm_A 77 SVVIIRGATGCGKTT 91 (235)
T ss_dssp SEEEEECCTTSSHHH
T ss_pred CEEEEEeCCCCCcHH
Confidence 379999999999994
No 377
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=28.88 E-value=99 Score=29.31 Aligned_cols=120 Identities=16% Similarity=0.116 Sum_probs=67.1
Q ss_pred EEEEEeCChHHHHHHHHHHHHccCCCCcc-CCcc--------ceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHH
Q 016570 99 SIYMVSDGTGWTAEHAVNAALGQFEHCLV-DRNC--------AVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPS 169 (387)
Q Consensus 99 ~IfiVSDsTGeTAe~v~~AaL~QF~~~~v-~~~~--------~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~e 169 (387)
.|.++ |.|-++..+++.+..++ ++.+ |+.. ...... --+.+.+.+.+++++ --+|+.++ -+.
T Consensus 18 kilvl--GaG~vG~~~~~~L~~~~-~v~~~~~~~~~~~~~~~~~~~~~-~d~~d~~~l~~~~~~----~DvVi~~~-p~~ 88 (365)
T 3abi_A 18 KVLIL--GAGNIGRAIAWDLKDEF-DVYIGDVNNENLEKVKEFATPLK-VDASNFDKLVEVMKE----FELVIGAL-PGF 88 (365)
T ss_dssp EEEEE--CCSHHHHHHHHHHTTTS-EEEEEESCHHHHHHHTTTSEEEE-CCTTCHHHHHHHHTT----CSEEEECC-CGG
T ss_pred EEEEE--CCCHHHHHHHHHHhcCC-CeEEEEcCHHHHHHHhccCCcEE-EecCCHHHHHHHHhC----CCEEEEec-CCc
Confidence 47777 56999999998766554 3211 1100 001111 124556666555432 23666554 666
Q ss_pred HHHHHHHHHHHcCCCEeecch--H---HHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhh
Q 016570 170 MAESAKKACELWGIPSTDVLG--P---ITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIE 227 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllg--p---~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIe 227 (387)
+-..+.+.|-+.|+.++|+-. + -++...+.-|+.-..-.+-.||+.+-+-...+++++
T Consensus 89 ~~~~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~~~~a~~~~~~~~ 151 (365)
T 3abi_A 89 LGFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAGFAPGLSNILMGRIFQELD 151 (365)
T ss_dssp GHHHHHHHHHHHTCEEEECCCCSSCGGGGHHHHHHTTCEEECCCBTTTBHHHHHHHHHHHHSC
T ss_pred ccchHHHHHHhcCcceEeeeccchhhhhhhhhhccCCceeeecCCCCCchHHHHHHHHHHhcc
Confidence 777888999999999999742 1 234455555655432223456655554444555443
No 378
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=28.84 E-value=20 Score=30.09 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
--|+|+|-+.+|||=|.-.|.+.-+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~ 51 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTF 51 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC---
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4599999999999999988875433
No 379
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=28.70 E-value=24 Score=35.79 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=21.8
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCcee
Q 016570 248 DIILSGVSRTGKTPLSIYLA-QKGYKV 273 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKV 273 (387)
-|+|.|+++||||=++--|| ..|+..
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 49999999999999999999 455433
No 380
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=28.47 E-value=20 Score=29.04 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
..-|+++|-+++|||=|.-.|.+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456999999999999998777743
No 381
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=28.19 E-value=21 Score=30.05 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=19.6
Q ss_pred CcCcEEEEccCCCCCChhhHHhhh
Q 016570 245 QKADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
.+.-|+|||-+.+|||=|.-||.+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999777764
No 382
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=28.15 E-value=24 Score=29.34 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=20.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
..-|+|+|-+.+|||=|.-.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356999999999999988888744
No 383
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=28.09 E-value=1.1e+02 Score=24.13 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=33.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016570 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+..=..++....+...|++++||++-+. +--..|...+|...
T Consensus 36 ViiA~D~~~~~~~~l~~~c~~~~vp~~~~~-~s~~eLG~a~G~~~ 79 (101)
T 1w41_A 36 IIVARNARPDIKEDIEYYARLSGIPVYEFE-GTSVELGTLLGRPH 79 (101)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHTCCEEEES-SCHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCEEEec-CCHHHHHHHhCCCC
Confidence 444444779999999999999999988742 24577888888763
No 384
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.01 E-value=26 Score=35.02 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=30.0
Q ss_pred HhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCce
Q 016570 223 FRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYK 272 (387)
Q Consensus 223 F~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~-~GyK 272 (387)
......+.-+++.... .-++|.|.++||||=+.-.+|+ .+..
T Consensus 35 ~~~~~~L~~~i~~~~~--------~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 35 LAAGKPLPRAIEAGHL--------HSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp HSTTSHHHHHHHHTCC--------CEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HhchHHHHHHHHcCCC--------cEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3334566666765432 3489999999999999999994 3443
No 385
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=28.00 E-value=25 Score=28.24 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=27.2
Q ss_pred HHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhcccc
Q 016570 339 FAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHDRKH 376 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~r~~ 376 (387)
.++++..++ +|+++-++. ..|+|.-..|++.+.++..
T Consensus 136 ~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 136 EASAFGASH-HVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHT-TCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 355566675 899998764 4799999999888865543
No 386
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=27.93 E-value=25 Score=31.68 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=22.6
Q ss_pred EEEEcc-CCCCCChhhHHhh----hcCceeeec
Q 016570 249 IILSGV-SRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 249 IVLvGV-SRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
|.+.|- +.+|||=+|.-|+ ++|+||+=+
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 667777 7999999988765 789998754
No 387
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=27.87 E-value=43 Score=28.85 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhC--C-CEEEEEcCC------------HHHHHHHHH-HHHHcCCCEeecchHHH
Q 016570 145 EQLMVIIKQAAKD--G-AMLVYTLAD------------PSMAESAKK-ACELWGIPSTDVLGPIT 193 (387)
Q Consensus 145 e~l~~ii~~a~~~--~-~iV~~Tlvd------------~elr~~l~~-~~~~~gi~~vDllgp~i 193 (387)
+.+.++++.+.+. + .||+.|+.. .++.+.+++ .|++.+++++|+...+.
T Consensus 115 ~~l~~~i~~l~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~a~~~~v~~iD~~~~~~ 179 (232)
T 1es9_A 115 GGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFV 179 (232)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHHHSCTTEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHCCCCeEEEecCCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCEEEeChHHhc
Confidence 4566677777553 2 377777642 345677777 78889999999987544
No 388
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=27.84 E-value=39 Score=31.41 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEe
Q 016570 144 VEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPST 186 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~gi~~v 186 (387)
.+++.++++.+.....+.-+.+........+..+|+++||.++
T Consensus 152 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~~~ 194 (290)
T 4gie_A 152 PHHLTELFKSCKIRPMVNQVELHPLFQQRTLREFCKQHNIAIT 194 (290)
T ss_dssp HHHHHHHHTTCSSCCSEEEEECBTTBCCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhccCCCceeeEeccccchhHHHHHHHHHcCceEe
Confidence 3444444333222223344444433333445567777777665
No 389
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=27.84 E-value=26 Score=29.29 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=22.6
Q ss_pred CCCCCcCcEEEEccCCCCCChhhHHhhhcC
Q 016570 241 PQNLQKADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 241 ~~~L~~ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
+....+--|+|||-+++|||=|.-.|.+.-
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 344566779999999999998886666443
No 390
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=27.55 E-value=45 Score=28.39 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=34.6
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016570 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+..=++| ++...+...|+++|||++-+. --..|....|.+-
T Consensus 52 ViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~--sk~eLG~a~G~~~ 95 (134)
T 2ale_A 52 IIMAADCEPIEILLHLPLLCEDKNVPYVFVP--SRVALGRACGVSR 95 (134)
T ss_dssp EEEETTCSSGGGGTHHHHHHHHHTCCEEEES--CHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHHhcCCCEEEEC--CHHHHHHHhCCCC
Confidence 555666788 599999999999999998874 4568888888863
No 391
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=27.36 E-value=21 Score=31.33 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=21.3
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016570 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyKVAN~P 277 (387)
+.|+|++++|||=|.--||. .|+.+..+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~ 36 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEECCCCChHHHHHHHHHhhcccCCEEEcCEe
Confidence 67999999999998877773 265544433
No 392
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=27.29 E-value=50 Score=27.53 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=37.9
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH---HHHhhhCCCCcEEeCCCccHHHHHHHHHHH
Q 016570 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA---GRIFAQNPVWPVIEVTGKAIEETAAVVLRL 370 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A---~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~ 370 (387)
..+|-|+.+++.+.+-..+|- | +. .+.+.+.+... ....... . -+||.+. ++||++..|.++
T Consensus 126 d~~i~l~~~~e~~~~R~~~R~---~--------~~-~~~~~~~i~~~~~~~~~~~~a-d-~vId~~~-~~~~~~~~i~~~ 190 (203)
T 1uf9_A 126 HGTLLVAAPLEERVRRVMARS---G--------LS-REEVLARERAQMPEEEKRKRA-T-WVLENTG-SLEDLERALKAV 190 (203)
T ss_dssp SEEEEECCCHHHHHHHHHTTT---C--------CT-THHHHHHHTTSCCHHHHHHHC-S-EEECCSS-HHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHcC---C--------CC-HHHHHHHHHHCCChhHHHHhC-C-EEEECCC-CHHHHHHHHHHH
Confidence 478999999987654222220 1 11 22232222211 1112222 3 4899887 999999999999
Q ss_pred Hhcc
Q 016570 371 YHDR 374 (387)
Q Consensus 371 ~~~r 374 (387)
+...
T Consensus 191 ~~~~ 194 (203)
T 1uf9_A 191 LAEL 194 (203)
T ss_dssp HHSC
T ss_pred HHHH
Confidence 8654
No 393
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=27.21 E-value=28 Score=28.34 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=23.2
Q ss_pred CCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016570 241 PQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 241 ~~~L~~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
+.+...--|+|+|-+.+|||=|.-.|.+.
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34556677999999999999998888754
No 394
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=27.19 E-value=89 Score=25.26 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=34.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016570 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+..=+.++....+...|++++||++-+ .+--..|...+|...
T Consensus 41 ViiA~D~~~~~~~~l~~~c~~~~Vp~~~~-~~sk~eLG~a~G~~~ 84 (110)
T 3cpq_A 41 VVLAGNIPKDLEEDVKYYAKLSNIPVYQH-KITSLELGAVCGKPF 84 (110)
T ss_dssp EEECTTCBHHHHHHHHHHHHHTTCCEEEC-CSCHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEE-cCCHHHHHHHhCCcc
Confidence 44445567999999999999999998875 234577888888764
No 395
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=27.18 E-value=17 Score=32.89 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
+.|+|.|++|||=|-=-|+
T Consensus 34 ~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEECSTTSSHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 4699999999997765555
No 396
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=27.12 E-value=24 Score=28.64 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhhcCc
Q 016570 244 LQKADIILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 244 L~~ADIVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
..+--|+|+|-+++|||=|.-.|.+.-+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4455699999999999998888875433
No 397
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=26.94 E-value=25 Score=29.14 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=26.1
Q ss_pred HHHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhcc
Q 016570 338 EFAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHDR 374 (387)
Q Consensus 338 ~~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~r 374 (387)
+.++++.++. +|+++.++. ..|+|.-..|++.+.++
T Consensus 151 ~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 151 EEARMFAENN-GLLFLETSALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 3456667775 899998764 57888888888766543
No 398
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=26.91 E-value=47 Score=27.01 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=20.6
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhc
Q 016570 245 QKADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
...-|+|+|-+++|||=|.-.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4457999999999999888777744
No 399
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=26.83 E-value=23 Score=32.65 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCceeeecccc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIV 279 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLV 279 (387)
--++++|.+.+|||-+---|.. +-.++.++|=+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~ 133 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGI 133 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC---------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCC
Confidence 4699999999999988777773 33467776643
No 400
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=26.80 E-value=19 Score=33.32 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016570 169 SMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 169 elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
.+.+.+.+.|++..-. +=..+++..|. +=|+. =.+| +++++--++ | .|+ +--
T Consensus 9 ~~~~~i~~~~~~~~~~--~~w~~I~~~l~-yq~~~----------------~~~f--~~~l~~~~~---~-iPk---kn~ 60 (212)
T 1tue_A 9 NMSQWIRFRCSKIDEG--GDWRPIVQFLR-YQQIE----------------FITF--LGALKSFLK---G-TPK---KNC 60 (212)
T ss_dssp CHHHHHHHHHHTSCSC--CCSHHHHHHHH-HTTCC----------------HHHH--HHHHHHHHH---T-CTT---CSE
T ss_pred CHHHHHHHHHHHccCC--CCHHHHHHHHH-HcCcC----------------HHHH--HHHHHHHHh---c-CCc---ccE
Confidence 4677888888754221 33455555554 22332 2344 455544444 2 333 223
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cceee
Q 016570 249 IILSGVSRTGKTPLSIYLAQK-GYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~-GyKVA 274 (387)
+++.|..+||||=+++=||+. +.|+-
T Consensus 61 ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 999999999999999999943 44553
No 401
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=26.80 E-value=21 Score=34.20 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=17.9
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
+.|+|.|++|||=|..-|+.
T Consensus 129 vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhh
Confidence 67999999999999988883
No 402
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=26.69 E-value=21 Score=32.99 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=57.6
Q ss_pred HHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHH--HHHHHHHhCCCCCC----CCCCCCCCCCCCc-
Q 016570 149 VIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPI--TEAIASHLGVSPSG----LPRGAPGRNFPLS- 219 (387)
Q Consensus 149 ~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~--i~~le~~lG~~p~~----~~~~~pG~~~~ld- 219 (387)
+.++.+.+.| +++++-+...++. .+.+.|+++|+..+.++.|- .+.++........- ...+..|....+.
T Consensus 113 ~~~~~~~~aGadgii~~d~~~e~~~-~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~ 191 (268)
T 1qop_A 113 AFYARCEQVGVDSVLVADVPVEESA-PFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGAL 191 (268)
T ss_dssp HHHHHHHHHTCCEEEETTCCGGGCH-HHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHH-HHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEEecCCcCCCccCCCc
Confidence 3344443333 5777766655554 44467889999888888774 23333322222100 0001223222222
Q ss_pred --HHHHhhhhhh-hhhhhCCCCCC-CCCCCc-----CcEEEEcc
Q 016570 220 --EEYFRRIEAI-EFTIKQDDGAL-PQNLQK-----ADIILSGV 254 (387)
Q Consensus 220 --~~YF~RIeAI-eFavkhDDG~~-~~~L~~-----ADIVLvGV 254 (387)
.++.+++... +.-|..+=|.+ ++++.+ ||.|+||=
T Consensus 192 ~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 192 PLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred hHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 4677777653 34466688887 665544 99999993
No 403
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=26.67 E-value=20 Score=32.42 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016570 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|++-|++++|||=++-.|+++
T Consensus 8 i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999943
No 404
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=26.55 E-value=33 Score=28.91 Aligned_cols=38 Identities=8% Similarity=0.028 Sum_probs=26.3
Q ss_pred HHHHHHHhhhCCCC-cEEeCCC---ccHHHHHHHHHHHHhccc
Q 016570 337 LEFAGRIFAQNPVW-PVIEVTG---KAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 337 L~~A~~lf~k~~g~-pvIDVT~---kSIEEtAa~Il~~~~~r~ 375 (387)
.+.++++.+++ |+ +++-++. ..|+|.-..|++.+.++.
T Consensus 141 ~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 141 STQGEELRKQI-GAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHHHHHHHHHH-TCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHc-CCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 34566666774 75 8888765 478999888888775543
No 405
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=26.52 E-value=21 Score=35.23 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
-++|.|.++||||=|.-.+|+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998885
No 406
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=26.51 E-value=83 Score=29.73 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=18.0
Q ss_pred EEcCCHHHHH-HHHHHHHHcCCCEeecchHHH
Q 016570 163 YTLADPSMAE-SAKKACELWGIPSTDVLGPIT 193 (387)
Q Consensus 163 ~Tlvd~elr~-~l~~~~~~~gi~~vDllgp~i 193 (387)
|++.+....+ .+..+|+++||.++- ++|+-
T Consensus 196 ~~l~~~~~~~~~l~~~~~~~gi~v~a-~spL~ 226 (346)
T 3n6q_A 196 YNLLNRWVDKSGLLDTLQNNGVGCIA-FTPLA 226 (346)
T ss_dssp CBTTBCHHHHTTHHHHHHHHTCEEEE-BSTTG
T ss_pred CchhhcCcchhhHHHHHHHcCCeEEE-ecccc
Confidence 5555555443 566777777776654 45554
No 407
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=26.49 E-value=2.1e+02 Score=23.11 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHHHHHcCCC-----Eeecch--HHHHHHHHHhCCCC
Q 016570 146 QLMVIIKQAAKDGAMLVYTLAD-----PSMAESAKKACELWGIP-----STDVLG--PITEAIASHLGVSP 204 (387)
Q Consensus 146 ~l~~ii~~a~~~~~iV~~Tlvd-----~elr~~l~~~~~~~gi~-----~vDllg--p~i~~le~~lG~~p 204 (387)
++.+.++++...+.+|+||-.. =-....+++...++||+ .+|+.. .+.+.|.+.+|...
T Consensus 4 ~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~t 74 (121)
T 3gx8_A 4 EIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPT 74 (121)
T ss_dssp HHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCC
Confidence 3455667777777899998862 22555666666677887 366642 35567777777653
No 408
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=26.44 E-value=25 Score=34.56 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=21.6
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceee
Q 016570 248 DIILSGVSRTGKTPLSIYLA-QKGYKVA 274 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKVA 274 (387)
=|+|+|.++||||=+.--|| ..+.++.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g~~~ 198 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGGKAL 198 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence 37899999999999999999 3444443
No 409
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=26.24 E-value=1.6e+02 Score=28.28 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=50.0
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016570 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (387)
Q Consensus 98 ~~IfiVSDsTGe-TAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (387)
+++|+--+..|. -|+.+++.+..-.|++ +++.+... +.+ ...+.+ ..--+|+.+.-+.+.|..+.+
T Consensus 78 rq~~~~~~diG~~Ka~~~~~~l~~lnp~v------~v~~~~~~-~~~--~~~~~~----~~~dvVv~~~d~~~~r~~ln~ 144 (346)
T 1y8q_A 78 AQFLIRTGSVGRNRAEASLERAQNLNPMV------DVKVDTED-IEK--KPESFF----TQFDAVCLTCCSRDVIVKVDQ 144 (346)
T ss_dssp GCTTSCSSCTTSBHHHHHHHHHHHTCTTS------EEEEECSC-GGG--CCHHHH----TTCSEEEEESCCHHHHHHHHH
T ss_pred CCCccccccCcCCHHHHHHHHHHhHCCCe------EEEEEecc-cCc--chHHHh----cCCCEEEEcCCCHHHHHHHHH
Confidence 444444455665 4666666666666764 34443322 221 122333 223599999999999999999
Q ss_pred HHHHcCCCEeec
Q 016570 177 ACELWGIPSTDV 188 (387)
Q Consensus 177 ~~~~~gi~~vDl 188 (387)
.|.++++|+|+.
T Consensus 145 ~~~~~~ip~i~~ 156 (346)
T 1y8q_A 145 ICHKNSIKFFTG 156 (346)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999999985
No 410
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=26.20 E-value=25 Score=30.20 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
--|+|+|-+.+|||=|.-.|.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999998887743
No 411
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=26.19 E-value=22 Score=33.71 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=16.9
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
|.|+|.|++|||=|.--|+
T Consensus 93 vgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHH
Confidence 5589999999999998887
No 412
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=26.15 E-value=27 Score=29.03 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=20.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
--|+|+|-+.+|||=|.-.|.+.-+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4699999999999999888875433
No 413
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=26.13 E-value=28 Score=28.75 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
--|+|+|-+.+|||=|.-.|.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999988887643
No 414
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=26.08 E-value=21 Score=35.90 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=22.9
Q ss_pred EEEccCCC-CCChhhHHhh----hcCceeeec
Q 016570 250 ILSGVSRT-GKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 250 VLvGVSRT-sKTPlSmYLA----~~GyKVAN~ 276 (387)
-+|||.+| |||=|+-||+ ..||||.+|
T Consensus 65 ~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 65 PSIHIAGTNGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 36788887 7999999999 469999876
No 415
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=25.97 E-value=26 Score=29.36 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcC
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
.--|+|+|-+.+|||=|.-.|.+.-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3569999999999999998887543
No 416
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=25.78 E-value=29 Score=31.45 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=18.8
Q ss_pred cCCCCCChhhHHhh----hcCceeeec
Q 016570 254 VSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 254 VSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
-.++|||=++..|| ++|+||.=|
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 67999999988777 689999643
No 417
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=25.76 E-value=30 Score=30.71 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=20.1
Q ss_pred EEccCCCCCChhhHHhh----hcCceeeec
Q 016570 251 LSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 251 LvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
+.|--++|||=+++-|| ++|+||.=|
T Consensus 6 vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 6 IYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 35777999999987666 689999643
No 418
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=25.71 E-value=18 Score=30.48 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=16.7
Q ss_pred cEEEEccCCCCCChhhHHhh
Q 016570 248 DIILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA 267 (387)
-|+|+|.+++|||=|.--|+
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 49999999999997766555
No 419
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=25.61 E-value=1.3e+02 Score=25.32 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=32.9
Q ss_pred EEEEEcCCHH-HHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016570 160 MLVYTLADPS-MAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (387)
Q Consensus 160 iV~~Tlvd~e-lr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~ 203 (387)
+|+..=+++. +...+...|++++||++-+. --..|...+|.+
T Consensus 61 ViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~--sk~eLG~a~G~~ 103 (135)
T 2aif_A 61 VLLAADAEPLEILLHLPLVCEDKNTPYVFVR--SKVALGRACGVS 103 (135)
T ss_dssp EEEETTCSCHHHHHHHHHHHHHTTCCEEEES--CHHHHHHHTTCS
T ss_pred EEEecCCChHHHHhHHHHHHHhcCCcEEEEC--CHHHHHHHhCCC
Confidence 4445556665 66899999999999999774 458899999987
No 420
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=25.59 E-value=22 Score=31.91 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.8
Q ss_pred EEEEccCCCCCChhhHHhh----hcCc
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGY 271 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~Gy 271 (387)
|++-|++++|||=++-.|+ ..|+
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 8999999999999888877 3577
No 421
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=25.59 E-value=1.1e+02 Score=25.15 Aligned_cols=44 Identities=9% Similarity=0.007 Sum_probs=34.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016570 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+..=+++.....+...|..++||++.+ .+--..|....|.+.
T Consensus 46 VilA~D~~~~~~~~i~~~c~~~~ipv~~~-~~s~~eLG~A~Gk~~ 89 (112)
T 3iz5_f 46 IILANNCPPLRKSEIETYAMLAKISVHHF-HGNNVDLGTACGKYY 89 (112)
T ss_dssp EEECSCCCHHHHHHHHHHHHHTTCCEECC-CCTTCTHHHHHCTTC
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCcEEEe-CCCHHHHHHHhCCcc
Confidence 66677778999999999999999999986 234456777777753
No 422
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=25.53 E-value=35 Score=30.98 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=32.1
Q ss_pred HHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccccCC
Q 016570 221 EYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPIVMG 281 (387)
Q Consensus 221 ~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~PLVp~ 281 (387)
.|-+|+.-..-.+.-.++..+. .+.-|++.+-.+.|||-.++=|| ..|+||.=+-++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg 67 (196)
T 1g5t_A 5 RYQQRQQKVKDRVDARVAQAQE--ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG 67 (196)
T ss_dssp ------------------------CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHhhcccchhhhhhhccc--cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 3444444444444455555554 46789999999999999998887 67999999977774
No 423
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=25.42 E-value=41 Score=29.05 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhC--C-CEEEEEcCC------------HHHHHHHHHHHH-HcCCCEeecchHH
Q 016570 145 EQLMVIIKQAAKD--G-AMLVYTLAD------------PSMAESAKKACE-LWGIPSTDVLGPI 192 (387)
Q Consensus 145 e~l~~ii~~a~~~--~-~iV~~Tlvd------------~elr~~l~~~~~-~~gi~~vDllgp~ 192 (387)
+.+..+++.+.+. + .||+.|+.- .++.+.+++.|. ..+++++|+...+
T Consensus 116 ~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~v~~iD~~~~~ 179 (229)
T 1fxw_F 116 GGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGF 179 (229)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHSSSSSSEEEECCCCSC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCCCCCchhhHHHHHHHHHHHHHHHHhcCCCeEEEeCHHHh
Confidence 3456667776543 2 377766532 256777888887 7899999998754
No 424
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=25.32 E-value=27 Score=30.01 Aligned_cols=36 Identities=6% Similarity=0.070 Sum_probs=27.0
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhccc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r~ 375 (387)
.++++.+++ +|+++-++ +..|+|.-..|++.+.++.
T Consensus 140 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 140 ESKTFAQEN-QLLFTETSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp HHHHHHHHT-TCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 455666775 89999875 5579999999988776543
No 425
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=25.25 E-value=29 Score=27.41 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
--|+++|-+.+|||=|.-.|.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999988888753
No 426
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=25.07 E-value=24 Score=32.98 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|.|+|.|++|||=|+-.|+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999884
No 427
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=24.98 E-value=24 Score=29.76 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=27.0
Q ss_pred HHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhccccc
Q 016570 339 FAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHDRKHK 377 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~r~~~ 377 (387)
.++++.++. +|+++-++. ..|+|.-..|++.+.++...
T Consensus 152 ~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 152 EASRFAQEN-ELMFLETSALTGENVEEAFLKCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 455666775 899988764 57899888888877655433
No 428
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=24.98 E-value=1.3e+02 Score=24.15 Aligned_cols=44 Identities=5% Similarity=-0.121 Sum_probs=34.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016570 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+..=++++.+..+...|..++||++... +--..|...+|.+.
T Consensus 42 VilA~D~~~~~~~~i~~~c~~~~ip~~~~~-~s~~eLG~A~Gk~~ 85 (105)
T 3u5e_c 42 IIIAANTPVLRKSELEYYAMLSKTKVYYFQ-GGNNELGTAVGKLF 85 (105)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTCEEEECS-SCHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEeC-CCHHHHHHHhCCcc
Confidence 555666779999999999999999999532 34567888888764
No 429
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=24.94 E-value=29 Score=28.56 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=26.4
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhccc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r~ 375 (387)
.++++.++. +|+++-++ +..|+|.-..|++.+..+.
T Consensus 135 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 135 EAQAVAQEW-KCAFMETSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp HHHHHHHHH-TCEEEECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHh-CCeEEEEecCCCCCHHHHHHHHHHHHhhhh
Confidence 344556664 88888876 4579999999998886654
No 430
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=24.91 E-value=26 Score=28.03 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=25.0
Q ss_pred HHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhccc
Q 016570 340 AGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 340 A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r~ 375 (387)
++.+...+ +|+++-++ +..|+|.-..|.+.+..++
T Consensus 134 ~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 134 GRACAVVF-DCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHH-TSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 44455564 88999876 4569999998888776543
No 431
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=24.86 E-value=28 Score=28.70 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.-|+++|-+.+|||=|.-.|.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999888754
No 432
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=24.68 E-value=1.3e+02 Score=24.01 Aligned_cols=44 Identities=7% Similarity=-0.037 Sum_probs=34.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016570 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+..=+++..+..+...|.+++||++.. -+--..|...+|.+.
T Consensus 42 ViiA~D~~~~~~~~i~~~c~~~~ip~~~~-~~s~~eLG~a~Gk~~ 85 (104)
T 4a18_G 42 VFISNNCPTVRKSEIEYYASLAQISIHHF-VGSNVELGTACGKYH 85 (104)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTCEEEEC-SSCHHHHHHHTTCSS
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCcEEEe-cCCHHHHHHHhCCcc
Confidence 56667778999999999999999999962 234667888888764
No 433
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=24.67 E-value=1.6e+02 Score=27.68 Aligned_cols=87 Identities=10% Similarity=0.056 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHccCCCCccCCccce-eEEeccc-cCCHHHHHHHHHHH----HhCC--CEEEEEcCCHHH-HHHHHHHH
Q 016570 108 GWTAEHAVNAALGQFEHCLVDRNCAV-NTHLFSG-IDDVEQLMVIIKQA----AKDG--AMLVYTLADPSM-AESAKKAC 178 (387)
Q Consensus 108 GeTAe~v~~AaL~QF~~~~v~~~~~~-~~~~~p~-V~t~e~l~~ii~~a----~~~~--~iV~~Tlvd~el-r~~l~~~~ 178 (387)
|.=.-+++++++.++|+.++ +-+ +.-++|| -++.+++.+.+.++ .+.| .||+..-..... -+.|++
T Consensus 33 GvGGLtv~~~i~~~lP~e~~---iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~-- 107 (274)
T 3uhf_A 33 GVGGLSVLKSLYEARLFDEI---IYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRA-- 107 (274)
T ss_dssp SSTTHHHHHHHHHTTCCSEE---EEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHH--
T ss_pred CCChHHHHHHHHHHCCCCCE---EEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHH--
Confidence 33356889999999997421 000 2224555 46788887775443 4445 477765544433 244444
Q ss_pred HHcCCCEeecchHHHHHHHHHh
Q 016570 179 ELWGIPSTDVLGPITEAIASHL 200 (387)
Q Consensus 179 ~~~gi~~vDllgp~i~~le~~l 200 (387)
..+||++.++.|.+.+....+
T Consensus 108 -~~~iPvigiiepa~~~a~~~~ 128 (274)
T 3uhf_A 108 -KAHFPVYGVIDAGVEATIKAL 128 (274)
T ss_dssp -HCSSCEECSHHHHHHHHHHHH
T ss_pred -hcCCCEEcCCHHHHHHHHHhc
Confidence 457999999999999988773
No 434
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=24.49 E-value=75 Score=26.04 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=33.8
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016570 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (387)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~ 203 (387)
+|+..=++| ++...+...|++++||++-+.+ -..|...+|..
T Consensus 49 ViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~s--k~eLG~a~G~~ 91 (120)
T 1vq8_F 49 VFVAEDVQPEEIVMHIPELADEKGVPFIFVEQ--QDDLGHAAGLE 91 (120)
T ss_dssp EEEESCCSSGGGTTTHHHHHHTTCCCEEEESC--HHHHHHHTTCS
T ss_pred EEEeCCCChHHHHHHHHHHHHhcCCCEEEECC--HHHHHHHhCCC
Confidence 455555667 5789999999999999987654 67899999987
No 435
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=24.41 E-value=24 Score=29.34 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=20.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
..-|+|+|.+.+|||=|--.|.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999888887743
No 436
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=24.40 E-value=53 Score=27.07 Aligned_cols=36 Identities=8% Similarity=0.145 Sum_probs=24.9
Q ss_pred HHHHHHhhhCCCCcEEeCCCcc----HHHHHHHHHHHHhcc
Q 016570 338 EFAGRIFAQNPVWPVIEVTGKA----IEETAAVVLRLYHDR 374 (387)
Q Consensus 338 ~~A~~lf~k~~g~pvIDVT~kS----IEEtAa~Il~~~~~r 374 (387)
+.++++++++ ||+++-++.+. |+|.-..|++.+.++
T Consensus 154 ~~~~~~~~~~-~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 154 DMAQDWATTN-TLDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp HHHHHHHHHT-TCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 5677788885 99999987555 888877777766443
No 437
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=24.38 E-value=29 Score=27.48 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
--|+++|-+++|||=+.-.|.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45999999999999998888744
No 438
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=24.36 E-value=25 Score=31.43 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.1
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
+.|+|.|++|||=|.--|+
T Consensus 33 ~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEECTTSCHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4699999999998877666
No 439
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=24.34 E-value=30 Score=28.86 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcC
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
..-|+|+|-+.+|||=|.-.|.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4569999999999999988888543
No 440
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=24.33 E-value=93 Score=26.14 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=33.5
Q ss_pred EEEEEcCC-HHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCC
Q 016570 160 MLVYTLAD-PSMAESAKKACELWGIPSTDVLGPITEAIASHLGV 202 (387)
Q Consensus 160 iV~~Tlvd-~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~ 202 (387)
+|+..=++ +++...+..+|.+++||++-+- -...|....|.
T Consensus 44 ViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~--sk~~LG~a~G~ 85 (126)
T 2xzm_U 44 VCVAEDCDQGNYVKLVKALCAKNEIKYVSVP--KRASLGEYLGH 85 (126)
T ss_dssp EEEESSCCSTTHHHHHHHHHHHTTCCEEEES--CSHHHHHHHTC
T ss_pred EEEeCCCChHHHHHHHHHHHHHhCCCEEEEC--CHHHHHHHHCC
Confidence 55566676 4999999999999999999653 67788999997
No 441
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=24.33 E-value=22 Score=36.87 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
..|+|+|.++||||=+.-++|+.
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTT
T ss_pred cceEEECCCchHHHHHHHHHHHh
Confidence 47999999999999999999964
No 442
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=24.18 E-value=30 Score=28.68 Aligned_cols=36 Identities=17% Similarity=0.069 Sum_probs=26.4
Q ss_pred HHHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhcc
Q 016570 338 EFAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHDR 374 (387)
Q Consensus 338 ~~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~r 374 (387)
+.++++.+++ +++++-++. ..|+|.-..|++.+..+
T Consensus 140 ~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 140 EEAKNRAEQW-NVNYVETSAKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHH-TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCeEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 3556666775 899988764 57999988888877554
No 443
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=24.09 E-value=28 Score=28.12 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=27.3
Q ss_pred HHHHHHhhhCCCCcEEeCCCc---cHHHHHHHHHHHHhccc
Q 016570 338 EFAGRIFAQNPVWPVIEVTGK---AIEETAAVVLRLYHDRK 375 (387)
Q Consensus 338 ~~A~~lf~k~~g~pvIDVT~k---SIEEtAa~Il~~~~~r~ 375 (387)
+.++++++++ +|+++-++.+ .|+|.-..|++.+.+++
T Consensus 144 ~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 144 EEAKNRAEQW-NVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHT-TCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 4556667775 8999987654 78999888888776543
No 444
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=24.08 E-value=58 Score=30.28 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEee
Q 016570 144 VEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTD 187 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~gi~~vD 187 (387)
.+++.+++..+.-....+-+.+-.-.....+..+|+++||.++-
T Consensus 165 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~~~a 208 (324)
T 4gac_A 165 SRQIDDVLSVASVRPAVLQVECHPYLAQNELIAHCHARGLEVTA 208 (324)
T ss_dssp HHHHHHHHHHCSSCCCEEEEECBTTBCCHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCCCcceeeeccCchhhHHHHHHHHHHhceeeee
Confidence 45555554443322333334433222233455677777776654
No 445
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=24.01 E-value=55 Score=34.80 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=45.8
Q ss_pred HHHHHHHHHHccCCCCccCCccceeEEec--c----ccCCH-------HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016570 110 TAEHAVNAALGQFEHCLVDRNCAVNTHLF--S----GIDDV-------EQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (387)
Q Consensus 110 TAe~v~~AaL~QF~~~~v~~~~~~~~~~~--p----~V~t~-------e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (387)
-|+.+++.+...+|++ +++.+.. | .|.++ +.+.+++. +--+||-+.-+.+.|..+.+
T Consensus 381 KAeaaa~~L~~iNP~V------~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~----~~DlVvd~tDn~~tR~~ln~ 450 (615)
T 4gsl_A 381 KAELAAASLKRIFPLM------DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIK----EHDIIFLLVDSRESRWLPSL 450 (615)
T ss_dssp HHHHHHHHHHHHCTTC------EEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHH----HCSEEEECCSSGGGTHHHHH
T ss_pred HHHHHHHHHHhhCCCc------EEEEeeccccccCccccchhhhcCCHHHHHHHhh----cCCEEEecCCCHHHHHHHHH
Confidence 4677777777778864 2333321 1 12222 23333332 23599999999999999999
Q ss_pred HHHHcCCCEeec
Q 016570 177 ACELWGIPSTDV 188 (387)
Q Consensus 177 ~~~~~gi~~vDl 188 (387)
.|.++++|+|+.
T Consensus 451 ~c~~~~~PlI~a 462 (615)
T 4gsl_A 451 LSNIENKTVINA 462 (615)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCeEEEE
Confidence 999999999984
No 446
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=23.98 E-value=25 Score=36.96 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.2
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
-++|.|.++||||=+.-.||+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999964
No 447
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=23.96 E-value=82 Score=25.77 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=33.7
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016570 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (387)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~ 203 (387)
+|+..=++| ++...+...|++++||++-+.+ -..|...+|..
T Consensus 47 ViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~s--k~eLG~a~G~~ 89 (119)
T 1rlg_A 47 VYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKS--KNDLGRAVGIE 89 (119)
T ss_dssp EEEESCCSCSTTTTHHHHHHHHHTCCEEEESC--HHHHHHHTTCS
T ss_pred EEEeCCCChHHHHHHHHHHHHHcCCCEEEeCC--HHHHHHHhCCC
Confidence 455555666 4789999999999999987755 67899999987
No 448
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=23.91 E-value=1.6e+02 Score=25.65 Aligned_cols=71 Identities=15% Similarity=0.045 Sum_probs=38.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH-H------------hhhCCCCcEEeCCCc
Q 016570 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGR-I------------FAQNPVWPVIEVTGK 358 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~-l------------f~k~~g~pvIDVT~k 358 (387)
.+..+|=|+++++.+.+--.+| |-.. ..+.+. ...+.+..+.. + +... .|-+||.+.
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R----~r~~---e~~~~~-~~~~~v~~~y~~~~~~~~~p~~~~~~~~~-~~~~Id~~~- 218 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQR----AREE---EKGIEL-AYLEQLHGQHEAWLIHKTTKLHFEALMNI-PVLVLDVND- 218 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHS----CCTT---TTTCCH-HHHHHHHHHHHHHHTSCCSCCCCTTGGGC-CEEEEECCS-
T ss_pred CCCEEEEEECCHHHHHHHHHhc----CCcc---cccCCH-HHHHHHHHHHHHHHhhccccccccccCCC-CEEEEECCC-
Confidence 4678999999998876522223 3221 112222 22233333332 2 2333 577899887
Q ss_pred cHHHHHHHHHHHHh
Q 016570 359 AIEETAAVVLRLYH 372 (387)
Q Consensus 359 SIEEtAa~Il~~~~ 372 (387)
++||..+.|.+++.
T Consensus 219 ~~~~v~~~i~~i~~ 232 (241)
T 2ocp_A 219 DFSEEVTKQEDLMR 232 (241)
T ss_dssp CTTTCHHHHHHHHH
T ss_pred ChhhCHHHHHHHHH
Confidence 78776655555443
No 449
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=23.91 E-value=24 Score=31.80 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.8
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
=++|.|.+|+|||=|...+++
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988884
No 450
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=23.90 E-value=28 Score=27.49 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.0
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
--|+++|-+.+|||=|.-.|.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4599999999999999888774
No 451
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=23.84 E-value=33 Score=27.81 Aligned_cols=36 Identities=8% Similarity=-0.019 Sum_probs=25.9
Q ss_pred HHHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHHHhcc
Q 016570 338 EFAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRLYHDR 374 (387)
Q Consensus 338 ~~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~~~~r 374 (387)
+.+++++++. +++++-++. ..|+|.-..|++.+.++
T Consensus 167 ~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 167 LEVQKYAQDN-NLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 4556667775 899998764 47888888888776543
No 452
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=23.70 E-value=82 Score=25.97 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=34.1
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016570 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (387)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~ 203 (387)
+|+..=++| ++...+...|++++||++-+.+ -..|...+|..
T Consensus 49 ViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~s--k~eLG~a~G~~ 91 (120)
T 1xbi_A 49 VIIAEDVKPEEVVAHLPYLCEEKGIPYAYVAS--KQDLGKAAGLE 91 (120)
T ss_dssp EEEESCCSSGGGTTTHHHHHHHHTCCEEEESC--HHHHHHHTTCS
T ss_pred EEEcCCCChHHHHHHHHHHHHhcCCCEEEeCC--HHHHHHHhCCC
Confidence 555666777 4789999999999999987755 67899999987
No 453
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=23.64 E-value=23 Score=33.01 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=22.6
Q ss_pred EEE--EccCCCCCChhhHHhhhc----------Cceeeeccc
Q 016570 249 IIL--SGVSRTGKTPLSIYLAQK----------GYKVANVPI 278 (387)
Q Consensus 249 IVL--vGVSRTsKTPlSmYLA~~----------GyKVAN~PL 278 (387)
++| .|.+|||||=|.-.+++. ++.+.-+..
T Consensus 53 ~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 53 MIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp EEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred EEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 555 699999999999998842 566665553
No 454
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=23.62 E-value=32 Score=26.96 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=19.2
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
+.-|+++|-+.+|||=|.-.|.+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 34699999999999988777764
No 455
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=23.46 E-value=82 Score=26.02 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=33.5
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016570 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (387)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~ 203 (387)
+|+..=++| ++...+...|++++||++-+.+ -..|...+|..
T Consensus 48 ViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~s--k~eLG~a~G~~ 90 (124)
T 2fc3_A 48 VVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPS--KKRLGEAAGIE 90 (124)
T ss_dssp EEEETTCSSGGGTTTHHHHHHHTTCCEEEESC--HHHHHHHTTCS
T ss_pred EEEcCCCChHHHHHHHHHHHHHcCCCEEEECC--HHHHHHHhCCC
Confidence 444555666 5788999999999999987754 67899999987
No 456
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=23.33 E-value=26 Score=35.68 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.7
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
=++|+|.++||||=+.-.||+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988883
No 457
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=23.29 E-value=32 Score=31.80 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=24.5
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016570 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
-+-|+|..++|||-.|-.|| .+|+..-+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 36799999999999999999 578776654
No 458
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=23.22 E-value=1.3e+02 Score=24.54 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=44.9
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhC-C-CEEEEE-cCCHHHH
Q 016570 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKD-G-AMLVYT-LADPSMA 171 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~-~-~iV~~T-lvd~elr 171 (387)
|....|++|+|.-=.|+-.++ ++ + .| -+.+.+++.+.+++..++ + +||+-| -+-..++
T Consensus 1 m~~mkiaVIgD~dtv~GFrLa--------Gi--------~--~~-~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~i~ 61 (109)
T 2d00_A 1 MVPVRMAVIADPETAQGFRLA--------GL--------E--GY-GASSAEEAQSLLETLVERGGYALVAVDEALLPDPE 61 (109)
T ss_dssp CCCCCEEEEECHHHHHHHHHT--------TS--------E--EE-ECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHH
T ss_pred CCccEEEEEeCHHHHHHHHHc--------CC--------e--EE-EeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHhhH
Confidence 345679999995444444443 31 1 23 357899999999987544 3 777766 2334677
Q ss_pred HHHHHHHHHcCCCEe
Q 016570 172 ESAKKACELWGIPST 186 (387)
Q Consensus 172 ~~l~~~~~~~gi~~v 186 (387)
+.+.+.-.....|.|
T Consensus 62 ~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 62 RAVERLMRGRDLPVL 76 (109)
T ss_dssp HHHHHHTTCCCCCEE
T ss_pred HHHHHHHhCCCCeEE
Confidence 777666444455654
No 459
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=23.21 E-value=39 Score=27.79 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
--|+++|-+.+|||=|.-.|.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999988874
No 460
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=23.20 E-value=29 Score=28.19 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=26.9
Q ss_pred HHHHHHhhhCCCCcEEeCCCc---cHHHHHHHHHHHHhcccccC
Q 016570 338 EFAGRIFAQNPVWPVIEVTGK---AIEETAAVVLRLYHDRKHKC 378 (387)
Q Consensus 338 ~~A~~lf~k~~g~pvIDVT~k---SIEEtAa~Il~~~~~r~~~~ 378 (387)
+.++++.++. +|+++-++.+ .|+|.=..|++.+.+++..+
T Consensus 132 ~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 132 EEGKALAESW-NAAFLESSAKENQTAVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp HHHHHHHHHT-TCEEEECCTTSHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHh-CCcEEEEecCCCCCHHHHHHHHHHHHHHhcCCc
Confidence 3466777785 9999998765 57777777777776665443
No 461
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=23.18 E-value=32 Score=28.68 Aligned_cols=34 Identities=9% Similarity=-0.048 Sum_probs=24.6
Q ss_pred HHHHHhhhCCCCcEEeCCC-c---cHHHHHHHHHHHHhc
Q 016570 339 FAGRIFAQNPVWPVIEVTG-K---AIEETAAVVLRLYHD 373 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT~-k---SIEEtAa~Il~~~~~ 373 (387)
.++++.+++ ||+++-++- + .|+|.-..|++.+.+
T Consensus 149 ~~~~~~~~~-~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 149 EGVALAGRF-GCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHH-TCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHc-CCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 456666775 899988876 3 688888888776643
No 462
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=23.18 E-value=25 Score=36.77 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.-++|+|.++||||=+.-.||+.
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999954
No 463
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=23.17 E-value=40 Score=30.08 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=19.3
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016570 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
+++|+|..++|||=+.+.++..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHH
Confidence 4999999999999999888843
No 464
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=23.11 E-value=3e+02 Score=23.77 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=53.5
Q ss_pred eeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCC
Q 016570 133 VNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRG 210 (387)
Q Consensus 133 ~~~~~~p~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~ 210 (387)
++...+..=.+.++..++++.+...+ +||+..... .+.+ +.+.+.|+|+|-+-. ...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~-~~l~~~~iPvV~i~~------------~~~----- 96 (276)
T 3jy6_A 38 YIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---PQTV-QEILHQQMPVVSVDR------------EMD----- 96 (276)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---HHHH-HHHHTTSSCEEEESC------------CCT-----
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---HHHH-HHHHHCCCCEEEEec------------ccC-----
Confidence 34444554456666667777765444 688877655 3333 455678999986522 111
Q ss_pred CCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCC
Q 016570 211 APGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSR 256 (387)
Q Consensus 211 ~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSR 256 (387)
.++......+.|-.=-.|.+|-+++ |. -.|.+++-+.
T Consensus 97 ~~~~~~V~~D~~~~g~~a~~~L~~~--G~-------~~I~~i~~~~ 133 (276)
T 3jy6_A 97 ACPWPQVVTDNFEAAKAATTAFRQQ--GY-------QHVVVLTSEL 133 (276)
T ss_dssp TCSSCEEECCHHHHHHHHHHHHHTT--TC-------CEEEEEEECS
T ss_pred CCCCCEEEEChHHHHHHHHHHHHHc--CC-------CeEEEEecCC
Confidence 1222222235555555788888875 22 2577877643
No 465
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=23.10 E-value=21 Score=29.67 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=12.9
Q ss_pred EEEEccCCCCCChh
Q 016570 249 IILSGVSRTGKTPL 262 (387)
Q Consensus 249 IVLvGVSRTsKTPl 262 (387)
.+|+|.+++|||=+
T Consensus 29 ~~i~G~NGsGKStl 42 (182)
T 3kta_A 29 TAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999987
No 466
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=23.09 E-value=33 Score=28.98 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.0
Q ss_pred CcEEEEccCCCCCChhhHHhh
Q 016570 247 ADIILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA 267 (387)
--|+|||-+.+|||=|...|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 359999999999998877776
No 467
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=23.06 E-value=26 Score=31.59 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.7
Q ss_pred cEEEEccCCCCCChhhHHhhh-cC
Q 016570 248 DIILSGVSRTGKTPLSIYLAQ-KG 270 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~G 270 (387)
=++|.|..|+|||=|.-.+++ .|
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEECCCcCCHHHHHHHHHHHcC
Confidence 489999999999999988884 34
No 468
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=22.98 E-value=27 Score=34.37 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=17.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016570 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
|+|||-+.+|||=|--.|.+....++|+|..-
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT 34 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTT 34 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC------------
T ss_pred EEEECCCCCCHHHHHHHHHCCCCcccCCCCcc
Confidence 78999999999988777775447888998653
No 469
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=22.83 E-value=32 Score=29.53 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.8
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
--|+|+|-+.+|||=|.-.|.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999998888754
No 470
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=22.78 E-value=45 Score=34.39 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=24.9
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh
Q 016570 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA 267 (387)
.+||..|+...| + .+|.|+.+||||=|...+.
T Consensus 195 ~~AV~~al~~~~------~----~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 195 KEAVLFALSQKE------L----AIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp HHHHHHHHHCSS------E----EEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCC------c----eEEECCCCCCHHHHHHHHH
Confidence 579999997432 1 3788999999999887665
No 471
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=22.71 E-value=1.2e+02 Score=25.99 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC-CEEEEEcC-------CHHHHHHHHHH
Q 016570 106 GTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG-AMLVYTLA-------DPSMAESAKKA 177 (387)
Q Consensus 106 sTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~-~iV~~Tlv-------d~elr~~l~~~ 177 (387)
+||-||..+-++. ++ ++ +++--+.-... .+|.+.++... .+|++|-- +++. ..|++.
T Consensus 36 AT~gTa~~L~e~~-----Gl------~v--~~v~k~~~eG~-p~I~d~I~~geIdlVInt~~pl~~~~h~~D~-~~IrR~ 100 (134)
T 2xw6_A 36 ATGTTGRRIEEAT-----GL------TV--EKLLSGPLGGD-QQMGARVAEGRILAVIFFRDPLTAQPHEPDV-QALLRV 100 (134)
T ss_dssp ECHHHHHHHHHHH-----CC------CC--EECSCGGGTHH-HHHHHHHHTTCEEEEEEECCTTTCCTTSCCS-HHHHHH
T ss_pred EccHHHHHHHHhh-----Cc------eE--EEEEecCCCCc-chHHHHHHCCCccEEEEccCcccCCCccchH-HHHHHH
Confidence 6899998887632 32 23 33323320111 34666665554 58888875 2222 467889
Q ss_pred HHHcCCCEeecc---hHHHHHHHHHhCC
Q 016570 178 CELWGIPSTDVL---GPITEAIASHLGV 202 (387)
Q Consensus 178 ~~~~gi~~vDll---gp~i~~le~~lG~ 202 (387)
|-.++|||+==+ ..++..|+...|.
T Consensus 101 A~~~~IP~~T~latA~a~v~al~~~~~~ 128 (134)
T 2xw6_A 101 CDVHGVPLATNPMAAEALIPWLQSLVGY 128 (134)
T ss_dssp HHHHTCCEECSHHHHHHHHHHHHTCTTC
T ss_pred HHHcCCCeEcCHHHHHHHHHHHHHHhCc
Confidence 999999997544 4566666655554
No 472
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=22.62 E-value=34 Score=27.61 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.--|+++|-+.+|||=|.-.|.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999988877743
No 473
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=22.62 E-value=32 Score=31.49 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=19.5
Q ss_pred EEEE-ccCCCCCChhhHHhhh-cCceee
Q 016570 249 IILS-GVSRTGKTPLSIYLAQ-KGYKVA 274 (387)
Q Consensus 249 IVLv-GVSRTsKTPlSmYLA~-~GyKVA 274 (387)
++|+ |.++||||=+...+|+ .|..+.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~ 77 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMM 77 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence 4555 5599999999999994 565543
No 474
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=22.59 E-value=42 Score=32.77 Aligned_cols=19 Identities=32% Similarity=0.586 Sum_probs=16.5
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
|||||-|++|||=+..++.
T Consensus 2 IvllGdsgvGKTSLl~~~~ 20 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVF 20 (331)
T ss_dssp EEEECSTTSSTTHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999876654
No 475
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=22.58 E-value=29 Score=33.68 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=73.2
Q ss_pred EEEEeCChHHHHHHHHHHHHccCCCCc-cCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHH
Q 016570 100 IYMVSDGTGWTAEHAVNAALGQFEHCL-VDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKAC 178 (387)
Q Consensus 100 IfiVSDsTGeTAe~v~~AaL~QF~~~~-v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~ 178 (387)
|.++++-.=+-++.+++++ -+.-+. +.+. . ..+.-.|| ..-+++++-+ ...-+.+||.--..|.=..-|++.
T Consensus 5 ~~~~~~~~~~e~~~l~~~~--~~~~~~~~~~~-~-~~~~~~~~-g~gk~~e~~~-~~~~~~v~~~~~l~p~q~~~l~~~- 77 (364)
T 2qtf_A 5 ALFVSKEFEEEAIALVEGA--NYKVTSIYKLP-K-SPNVKFYI-QYDKLQQIKN-DEEISTLIIFEQLKPRHFINIRRE- 77 (364)
T ss_dssp EEECCTTTHHHHHHHHHHT--TEEEEEEECCC-S-SCBTTTBS-CHHHHHHHHT-CTTCCEEEESSCCCHHHHHHHHHH-
T ss_pred eEeCcHHHHHHHHHHHHHC--CCEEEEEEEEc-c-CCCCccee-chhHHHHHhh-ccCCCEEEECCCCCHHHHHHHHHH-
Confidence 4455655555566677765 221100 0000 0 11111244 4667787655 222224666666677666666655
Q ss_pred HHcCC-CEeecchHHHHHHHHHhCCCC-C------------------------C--CCCCCCCCCCCCc---HHHHhhhh
Q 016570 179 ELWGI-PSTDVLGPITEAIASHLGVSP-S------------------------G--LPRGAPGRNFPLS---EEYFRRIE 227 (387)
Q Consensus 179 ~~~gi-~~vDllgp~i~~le~~lG~~p-~------------------------~--~~~~~pG~~~~ld---~~YF~RIe 227 (387)
+++ ..+|..+=+++.+........ . + ...+-||.. .+. ..--+||.
T Consensus 78 --~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl~~~~~l~~~~~~i~~~g~ge~-~~e~~~~~~~~~i~ 154 (364)
T 2qtf_A 78 --LKGKEVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPIIKETYTKSKIGEQQGPLGAGTY-GVESTIKFYKRRIN 154 (364)
T ss_dssp --HTTCEEECHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHH
T ss_pred --hCCCceeehHhHHHHHHHhhCcccchhHHHHHHHHhhhchhhhhhhHHHHhcCCCCcCCcCHH-HHHHHHHHHHHHHH
Confidence 457 788877666665543332221 0 0 000012221 122 12344555
Q ss_pred hhhhhhh----CCCCC-CCCCCCcCc-EEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016570 228 AIEFTIK----QDDGA-LPQNLQKAD-IILSGVSRTGKTPLSIYLAQKGYKVANVPI 278 (387)
Q Consensus 228 AIeFavk----hDDG~-~~~~L~~AD-IVLvGVSRTsKTPlSmYLA~~GyKVAN~PL 278 (387)
.+.=.++ +-+.. ..+.-...- |+|+|.+.+|||=|--.|+.....+.++|.
T Consensus 155 ~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~ 211 (364)
T 2qtf_A 155 KLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLF 211 (364)
T ss_dssp HHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcc
Confidence 5443222 11111 111111233 889999999999998888866566666654
No 476
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.55 E-value=35 Score=35.62 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.1
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cC
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQ-KG 270 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~-~G 270 (387)
.-++|.|.++||||=+.-.||+ .|
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4699999999999999999994 44
No 477
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=22.33 E-value=28 Score=35.54 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|+|+|.++||||=|.-.+|+
T Consensus 67 vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998884
No 478
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=22.23 E-value=30 Score=29.49 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=17.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
+.|+|.+++|||=|.=-|+.
T Consensus 36 v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999999888873
No 479
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=22.12 E-value=2.5e+02 Score=25.43 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=50.8
Q ss_pred HHHHHHHHHHccCCCCccCCccce-eEEeccc-cCCHHHHHHHHHH----HHhCC--CEEEEEcCCHH-HHHHHHHHHHH
Q 016570 110 TAEHAVNAALGQFEHCLVDRNCAV-NTHLFSG-IDDVEQLMVIIKQ----AAKDG--AMLVYTLADPS-MAESAKKACEL 180 (387)
Q Consensus 110 TAe~v~~AaL~QF~~~~v~~~~~~-~~~~~p~-V~t~e~l~~ii~~----a~~~~--~iV~~Tlvd~e-lr~~l~~~~~~ 180 (387)
=.-++.+++..++|+.++ +-+ +.-++|| .++.+.+.+.+.+ +.+.| +||+..-.... ..+.++ +.
T Consensus 11 GGltv~~~l~~~lP~~~~---iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTa~~~~~~~lr---~~ 84 (255)
T 2jfz_A 11 GGFSVLKSLLKARLFDEI---IYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQ---KY 84 (255)
T ss_dssp TTHHHHHHHHHTTCCSEE---EEEECTTTCCCTTSCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHHHH---HH
T ss_pred cHHHHHHHHHHHCCCCCE---EEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHH---Hh
Confidence 345677888888987421 000 1125687 4677777666443 33444 57776544443 233443 34
Q ss_pred cCCCEeecchHHHHHHHHH
Q 016570 181 WGIPSTDVLGPITEAIASH 199 (387)
Q Consensus 181 ~gi~~vDllgp~i~~le~~ 199 (387)
.+||++.++.|.+......
T Consensus 85 ~~iPvigii~~av~~A~~~ 103 (255)
T 2jfz_A 85 SKIPIVGVIEPSILAIKRQ 103 (255)
T ss_dssp CSSCEECSSHHHHHHHHHH
T ss_pred CCCCEEeeeHHHHHHHHHh
Confidence 5899999999988877655
No 480
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=22.09 E-value=34 Score=28.95 Aligned_cols=37 Identities=19% Similarity=0.038 Sum_probs=27.0
Q ss_pred HHHHHHhhhCCCC-cEEeCC---CccHHHHHHHHHHHHhccc
Q 016570 338 EFAGRIFAQNPVW-PVIEVT---GKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 338 ~~A~~lf~k~~g~-pvIDVT---~kSIEEtAa~Il~~~~~r~ 375 (387)
+.++++.++. || +++-++ +..|+|.-..|++.+.++.
T Consensus 155 ~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 155 AEAQSLAEHY-DILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHT-TCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 3456667775 88 888874 5679999988888776543
No 481
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=22.02 E-value=1.7e+02 Score=25.55 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=30.2
Q ss_pred EEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeec
Q 016570 135 THLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDV 188 (387)
Q Consensus 135 ~~~~p~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vDl 188 (387)
+..+..-.+.++..+.++.+...+ +||++.....++.+.++ .+.+.|+|+|-+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~-~~~~~~iPvV~~ 89 (290)
T 2fn9_A 35 ATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK-RAKEAGIPVFCV 89 (290)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH-HHHHTTCCEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH-HHHHCCCeEEEE
Confidence 333333345665556666654443 68887654444444454 345679999865
No 482
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=21.95 E-value=1.6e+02 Score=30.36 Aligned_cols=81 Identities=14% Similarity=-0.050 Sum_probs=48.8
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016570 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (387)
Q Consensus 98 ~~IfiVSDsTGe-TAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (387)
+++|+-.+..|. -|+.+++.+...+|++ +++.+. ...+.+.+-..+.-..--+||.+..+.+.|..+.+
T Consensus 74 RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v------~v~~~~----~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~ 143 (531)
T 1tt5_A 74 NNFFLQRSSIGKNRAEAAMEFLQELNSDV------SGSFVE----ESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 143 (531)
T ss_dssp HCTTCCGGGBTSBHHHHHHHHHHTTCTTS------BCCEES----SCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHH
T ss_pred cCccCChhhcCcHHHHHHHHHHHHhCCCC------eEEEeC----CCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHH
Confidence 344443344564 3666666666666764 233222 12222111011112223589999999999999999
Q ss_pred HHHHcCCCEeec
Q 016570 177 ACELWGIPSTDV 188 (387)
Q Consensus 177 ~~~~~gi~~vDl 188 (387)
.|.++++|+|+.
T Consensus 144 ~c~~~~iplI~~ 155 (531)
T 1tt5_A 144 VLWNSQIPLLIC 155 (531)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999999986
No 483
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=21.93 E-value=32 Score=28.85 Aligned_cols=36 Identities=6% Similarity=-0.036 Sum_probs=25.5
Q ss_pred HHHHHhhhCCCCcEEeCCCc---cHHHHHHHHHHHHhccc
Q 016570 339 FAGRIFAQNPVWPVIEVTGK---AIEETAAVVLRLYHDRK 375 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT~k---SIEEtAa~Il~~~~~r~ 375 (387)
.++++.+.. ||+++-++.+ .|+|.-..|++.+.+..
T Consensus 151 ~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 151 EGKKLAESW-GATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHH-TCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh-CCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 455666675 8999998765 57888788887775543
No 484
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=21.91 E-value=31 Score=31.78 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.6
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
+.|+|.|++|||=|.--|+
T Consensus 28 v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEECSTTCSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 7799999999998765454
No 485
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=21.84 E-value=30 Score=31.27 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.7
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
+.|+|.|++|||=|.--|+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5699999999999877776
No 486
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=21.82 E-value=36 Score=27.05 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.1
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016570 247 ADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
--|+++|-+.+|||=|.-.|.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999888864
No 487
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=21.80 E-value=34 Score=28.45 Aligned_cols=34 Identities=21% Similarity=-0.003 Sum_probs=24.8
Q ss_pred HHHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHh
Q 016570 338 EFAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYH 372 (387)
Q Consensus 338 ~~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~ 372 (387)
+.++++.++. ||+++-++ +..|+|.-..|.+.+.
T Consensus 149 ~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 149 KDAKEYAESI-GAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHTT-TCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHc-CCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 3466677775 89999876 4578888888877654
No 488
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=21.79 E-value=2.6e+02 Score=22.05 Aligned_cols=58 Identities=7% Similarity=0.130 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCEEEEEc-----CCHHHHHHHHHHHHHcCCCE--eecch--HHHHHHHHHhCCCC
Q 016570 147 LMVIIKQAAKDGAMLVYTL-----ADPSMAESAKKACELWGIPS--TDVLG--PITEAIASHLGVSP 204 (387)
Q Consensus 147 l~~ii~~a~~~~~iV~~Tl-----vd~elr~~l~~~~~~~gi~~--vDllg--p~i~~le~~lG~~p 204 (387)
+.+-++++...+.+|+||- -.=-....+++...++||++ +|+.. ...+.|.+..|...
T Consensus 5 ~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~t 71 (111)
T 3zyw_A 5 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPT 71 (111)
T ss_dssp HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCC
Confidence 4555666677778999987 33234556666667777765 46542 34566777777643
No 489
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=21.77 E-value=55 Score=33.61 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=53.4
Q ss_pred CccEEEEEeCCh----HHHHHHHH---HHH---HccCCCCccCCccceeEEeccccCCHHHHHHHHHHH-HhCC--CEEE
Q 016570 96 EGKSIYMVSDGT----GWTAEHAV---NAA---LGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQA-AKDG--AMLV 162 (387)
Q Consensus 96 ~~~~IfiVSDsT----GeTAe~v~---~Aa---L~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a-~~~~--~iV~ 162 (387)
+.+.++||--|- ++|.++++ +.. |.+... +++++.-.+.|.|.+.+.++++++ .+++ +||+
T Consensus 5 ~~~~~~~~~gsq~lyg~~~~~~v~~~~~~~~~~l~~~~~------l~~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~ 78 (500)
T 4f2d_A 5 DNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAK------LPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVV 78 (500)
T ss_dssp GGCEEEEEEBCCSSSCTTHHHHHHHHHHHHHHHHHHHTC------CSSEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCceEEEEeccccccCHHHHHHHHHHHHHHHHHhccccC------CCeEEEecCcCCCHHHHHHHHHHhccccCCcEEEE
Confidence 445677765442 35555555 333 334322 457888999999999999999998 5555 3443
Q ss_pred --EEcCCHHHHHHHHHHHHHcCCCEee
Q 016570 163 --YTLADPSMAESAKKACELWGIPSTD 187 (387)
Q Consensus 163 --~Tlvd~elr~~l~~~~~~~gi~~vD 187 (387)
+|+.+..+--.+- +.+++|++=
T Consensus 79 ~~~TFs~a~~~i~~l---~~l~~PvL~ 102 (500)
T 4f2d_A 79 WLHTFSPAKMWINGL---TMLNKPLLQ 102 (500)
T ss_dssp ECCSCCCTHHHHHHH---HHCCSCEEE
T ss_pred eCCcCccHHHHHHHH---HhcCCCEEE
Confidence 7888876643333 446678764
No 490
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.76 E-value=2e+02 Score=24.99 Aligned_cols=102 Identities=10% Similarity=-0.007 Sum_probs=56.3
Q ss_pred eEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCC
Q 016570 134 NTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGA 211 (387)
Q Consensus 134 ~~~~~p~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~ 211 (387)
++..+..-.+.++..+.++.+...+ +||+.......+.+.++ .+.+.|+|+|-+-. .... .
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~-~~~~~~iPvV~~~~------------~~~~----~ 102 (293)
T 3l6u_A 40 EALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE-EAKKAGIPVFAIDR------------MIRS----D 102 (293)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH-HHHHTTCCEEEESS------------CCCC----T
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH-HHHHcCCCEEEecC------------CCCC----C
Confidence 3444444456666666777664444 78888776665555554 45567999997632 1110 1
Q ss_pred CCCCCCCcHHHHhhhhhhhhhhhC-CCCCCCCCCCcCcEEEEccC
Q 016570 212 PGRNFPLSEEYFRRIEAIEFTIKQ-DDGALPQNLQKADIILSGVS 255 (387)
Q Consensus 212 pG~~~~ld~~YF~RIeAIeFavkh-DDG~~~~~L~~ADIVLvGVS 255 (387)
++......++|-.=-.|.+|.+++ +.++ +-....|.+|+-.
T Consensus 103 ~~~~~V~~D~~~~g~~~~~~l~~~~~g~~---~~~~~~i~~i~g~ 144 (293)
T 3l6u_A 103 AVVSSITSNNQMIGEQLASYIKNELIKQT---GRSTGRIVEITGT 144 (293)
T ss_dssp TCSEEEEECHHHHHHHHHHHHHHHHHHHH---SCSCEEEEEEECS
T ss_pred cceeEEecCHHHHHHHHHHHHHHHhccCC---CCCCceEEEEECC
Confidence 122222335555555778888873 0111 1123478888643
No 491
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=21.74 E-value=30 Score=34.28 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016570 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
+.|+|.|+||||=|.--||-
T Consensus 50 ~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCChHHHHHHHHhC
Confidence 67999999999999888873
No 492
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=21.72 E-value=1.6e+02 Score=24.65 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=27.4
Q ss_pred HHHHHHHhCC-CEEEEEcCC----HHHHHHHHHHHHHcCCCEeecchH
Q 016570 149 VIIKQAAKDG-AMLVYTLAD----PSMAESAKKACELWGIPSTDVLGP 191 (387)
Q Consensus 149 ~ii~~a~~~~-~iV~~Tlvd----~elr~~l~~~~~~~gi~~vDllgp 191 (387)
.|++.++... .+|+.|--. ..=-..+++.|-+++||++==+.-
T Consensus 87 ~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~~~t 134 (143)
T 2yvq_A 87 SIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTNFQV 134 (143)
T ss_dssp CHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECSHHH
T ss_pred cHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcCHHH
Confidence 3555555444 688887644 112336788999999999864443
No 493
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=21.70 E-value=34 Score=28.17 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.3
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016570 246 KADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.--|+|+|-+++|||=|.-.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999998888754
No 494
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=21.57 E-value=37 Score=27.51 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=26.1
Q ss_pred HHHHHhhhCCCCcEEeCC---CccHHHHHHHHHHHHhccc
Q 016570 339 FAGRIFAQNPVWPVIEVT---GKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT---~kSIEEtAa~Il~~~~~r~ 375 (387)
.++++.+.+ +|+++-++ +..|+|.-..|++.+..++
T Consensus 130 ~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 130 QAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp HHHHHHHHH-TCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 455566665 89999886 5569998888888776543
No 495
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=21.34 E-value=47 Score=27.75 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCC--EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016570 148 MVIIKQAAKDGA--MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 148 ~~ii~~a~~~~~--iV~~Tlvd~-elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
.++++.++...+ +|+..=++| ++...+...|+++|||++-+.+ ...|....|.+.
T Consensus 31 ~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~s--k~~LG~a~G~k~ 88 (113)
T 3jyw_G 31 NHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKG--KARLGTLVNQKT 88 (113)
T ss_dssp HHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSC--STTTHHHHCSSS
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECC--HHHHHHHHCCCC
Confidence 345544444443 444555666 7888999999999999998766 578888888874
No 496
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=21.23 E-value=31 Score=34.20 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.9
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016570 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
+.|+|.|+||||=|.--||
T Consensus 32 ~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHHH
Confidence 5699999999999987777
No 497
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=21.08 E-value=32 Score=29.40 Aligned_cols=43 Identities=26% Similarity=0.459 Sum_probs=21.3
Q ss_pred CCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016570 217 PLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 217 ~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
..-+-||+-+..-+ .+.....--|+++|-+.+|||=|.-.|.+
T Consensus 14 ~~~~~~~~~~~~~~---------~~~~~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 14 GTENLYFQSMAGEE---------APPGVRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp ---------------------------CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cccccccccccccc---------CCCCcceEEEEEECcCCCCHHHHHHHHHc
Confidence 33466887766433 23334456799999999999999888874
No 498
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=21.08 E-value=39 Score=29.60 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=20.2
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016570 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
|++=|+-|||||=.+=.|+ .+|++|-
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 6777999999999666555 5688764
No 499
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=20.93 E-value=39 Score=34.87 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=23.1
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016570 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
--++|.|..+||||=+...|+ ..|++|.-.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 358999999999998877665 467776543
No 500
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=20.88 E-value=3e+02 Score=21.42 Aligned_cols=57 Identities=7% Similarity=0.124 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCE--eecc----hH-HHHHHHHHhCCCC
Q 016570 148 MVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPS--TDVL----GP-ITEAIASHLGVSP 204 (387)
Q Consensus 148 ~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~gi~~--vDll----gp-~i~~le~~lG~~p 204 (387)
.+-++++...+.+++||--.=-....++....++|+++ +|+- ++ +-..|.+..|...
T Consensus 7 ~~~~~~~i~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~t 70 (114)
T 3h8q_A 7 RRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKT 70 (114)
T ss_dssp HHHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCc
Confidence 34455555566799999877556677777888888876 4553 12 3356777788653
Done!