Query 016572
Match_columns 387
No_of_seqs 290 out of 2031
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12887 ubiA tocopherol phyty 100.0 4.2E-49 9E-54 384.6 33.2 290 89-386 2-296 (308)
2 PLN02878 homogentisate phytylt 100.0 4.5E-49 9.8E-54 373.5 27.3 264 123-386 7-270 (280)
3 PRK12895 ubiA prenyltransferas 100.0 1E-39 2.2E-44 314.7 30.1 259 99-379 2-263 (286)
4 PRK13106 ubiA prenyltransferas 100.0 3.6E-38 7.9E-43 306.2 29.7 262 94-378 9-277 (300)
5 PRK12874 ubiA prenyltransferas 100.0 1E-37 2.2E-42 302.5 32.0 270 94-384 2-276 (291)
6 PLN02809 4-hydroxybenzoate non 100.0 7.8E-38 1.7E-42 302.7 29.7 262 97-379 3-269 (289)
7 PRK12870 ubiA 4-hydroxybenzoat 100.0 6.2E-38 1.3E-42 304.0 28.6 261 96-380 5-272 (290)
8 TIGR01475 ubiA_other putative 100.0 1.8E-37 3.8E-42 300.0 30.3 265 99-384 1-268 (282)
9 PRK12888 ubiA prenyltransferas 100.0 4.9E-37 1.1E-41 296.7 29.2 259 99-378 1-263 (284)
10 PRK12873 ubiA prenyltransferas 100.0 6E-37 1.3E-41 295.9 28.0 261 98-380 5-276 (294)
11 PRK12886 ubiA prenyltransferas 100.0 3.3E-36 7.3E-41 291.9 31.6 265 96-383 4-272 (291)
12 PRK12848 ubiA 4-hydroxybenzoat 100.0 2.6E-36 5.6E-41 291.8 29.5 259 97-379 2-265 (282)
13 PRK12847 ubiA 4-hydroxybenzoat 100.0 7.3E-36 1.6E-40 289.1 32.4 265 96-383 3-273 (285)
14 PRK12878 ubiA 4-hydroxybenzoat 100.0 7E-36 1.5E-40 292.4 31.5 264 94-379 24-295 (314)
15 PRK12876 ubiA prenyltransferas 100.0 1.1E-35 2.3E-40 287.3 30.5 269 98-380 2-280 (300)
16 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.8E-35 3.8E-40 285.6 29.8 263 99-385 2-266 (279)
17 PRK12884 ubiA prenyltransferas 100.0 5.3E-35 1.1E-39 282.2 29.5 256 98-377 2-258 (279)
18 COG0382 UbiA 4-hydroxybenzoate 100.0 8E-35 1.7E-39 282.4 30.9 265 96-383 6-275 (289)
19 PRK12882 ubiA prenyltransferas 100.0 4.5E-35 9.7E-40 282.4 29.0 259 99-379 3-262 (276)
20 PLN00012 chlorophyll synthetas 100.0 1.7E-34 3.6E-39 287.8 33.6 268 95-381 80-357 (375)
21 TIGR01474 ubiA_proteo 4-hydrox 100.0 9.4E-35 2E-39 280.8 30.7 262 100-383 1-268 (281)
22 PRK07566 bacteriochlorophyll/c 100.0 1.4E-34 3E-39 283.6 29.0 224 97-332 24-249 (314)
23 PRK12392 bacteriochlorophyll c 100.0 4.2E-34 9.1E-39 281.1 30.2 265 96-377 8-280 (331)
24 TIGR01476 chlor_syn_BchG bacte 100.0 8.6E-34 1.9E-38 274.4 26.7 221 101-334 1-223 (283)
25 PRK04375 protoheme IX farnesyl 100.0 2.1E-33 4.5E-38 273.3 29.3 264 98-384 8-278 (296)
26 PRK12869 ubiA protoheme IX far 100.0 2.5E-33 5.3E-38 270.6 29.5 264 99-385 1-270 (279)
27 KOG1381 Para-hydroxybenzoate-p 100.0 2.5E-35 5.5E-40 272.9 12.8 271 89-380 53-328 (353)
28 PRK05951 ubiA prenyltransferas 100.0 5.8E-33 1.3E-37 270.1 28.8 268 98-380 2-278 (296)
29 TIGR02056 ChlG chlorophyll syn 100.0 3.2E-32 7E-37 266.0 29.9 223 95-332 11-243 (306)
30 TIGR01473 cyoE_ctaB protoheme 100.0 4.2E-32 9.1E-37 262.2 29.6 264 101-385 1-271 (280)
31 PRK13362 protoheme IX farnesyl 100.0 1.5E-31 3.2E-36 260.9 30.9 268 97-385 10-284 (306)
32 PRK13595 ubiA prenyltransferas 100.0 1.4E-31 3.1E-36 257.0 28.3 257 96-383 8-270 (292)
33 PRK12883 ubiA prenyltransferas 100.0 2.1E-31 4.5E-36 257.0 29.2 205 99-324 2-206 (277)
34 PRK06080 1,4-dihydroxy-2-napht 100.0 5.1E-31 1.1E-35 256.2 28.4 229 99-342 2-238 (293)
35 PRK12871 ubiA prenyltransferas 100.0 4.3E-30 9.3E-35 249.6 29.1 259 98-379 3-278 (297)
36 PRK13387 1,4-dihydroxy-2-napht 100.0 1.7E-29 3.8E-34 247.6 27.8 225 100-338 3-255 (317)
37 PLN02776 prenyltransferase 100.0 8.7E-28 1.9E-32 235.6 28.8 256 106-385 1-264 (341)
38 PLN02922 prenyltransferase 100.0 3.2E-27 7E-32 231.1 30.4 235 98-342 13-258 (315)
39 PRK07419 1,4-dihydroxy-2-napht 100.0 3.5E-27 7.5E-32 229.7 29.7 231 97-343 9-245 (304)
40 TIGR00751 menA 1,4-dihydroxy-2 100.0 2.7E-27 5.9E-32 228.7 27.4 215 108-337 1-229 (284)
41 COG0109 CyoE Polyprenyltransfe 100.0 1.7E-27 3.6E-32 227.3 20.6 267 96-385 14-287 (304)
42 PF01040 UbiA: UbiA prenyltran 100.0 1.2E-26 2.6E-31 219.6 23.9 241 115-378 4-246 (257)
43 TIGR02235 menA_cyano-plnt 1,4- 100.0 4.8E-26 1E-30 220.1 28.6 225 103-343 2-232 (285)
44 PRK13105 ubiA prenyltransferas 100.0 4.9E-26 1.1E-30 219.1 28.4 218 100-336 1-224 (282)
45 PRK12872 ubiA prenyltransferas 100.0 3E-26 6.5E-31 221.7 26.8 222 98-337 2-226 (285)
46 COG1575 MenA 1,4-dihydroxy-2-n 99.9 2E-25 4.3E-30 213.6 27.3 230 98-341 6-245 (303)
47 PRK12875 ubiA prenyltransferas 99.9 6.2E-25 1.3E-29 211.9 28.2 218 97-336 5-229 (282)
48 PRK13591 ubiA prenyltransferas 99.9 2.2E-24 4.7E-29 208.3 26.5 177 146-338 65-245 (307)
49 PRK13592 ubiA prenyltransferas 99.9 1.9E-23 4.2E-28 200.1 24.2 177 141-331 48-232 (299)
50 PRK08238 hypothetical protein; 99.9 3.9E-21 8.4E-26 197.9 25.9 189 96-305 187-377 (479)
51 PRK12324 phosphoribose diphosp 99.9 8E-21 1.7E-25 184.2 25.7 148 97-254 8-157 (295)
52 KOG1380 Heme A farnesyltransfe 99.7 2.1E-18 4.6E-23 164.1 5.1 257 98-384 92-359 (409)
53 KOG4581 Predicted membrane pro 99.6 2.3E-15 4.9E-20 137.5 4.6 231 97-340 58-297 (359)
54 PRK13591 ubiA prenyltransferas 91.1 0.91 2E-05 44.6 8.0 66 157-225 197-271 (307)
55 COG1575 MenA 1,4-dihydroxy-2-n 90.0 3.1 6.7E-05 40.8 10.5 45 143-189 180-224 (303)
56 PRK13387 1,4-dihydroxy-2-napht 88.7 2.1 4.7E-05 42.3 8.6 50 144-196 194-244 (317)
57 PRK07419 1,4-dihydroxy-2-napht 88.6 4.7 0.0001 39.6 10.9 39 150-191 185-224 (304)
58 PRK12872 ubiA prenyltransferas 88.4 5.7 0.00012 38.2 11.3 35 146-180 168-203 (285)
59 PLN02922 prenyltransferase 87.4 2.7 5.9E-05 41.5 8.4 45 146-193 195-240 (315)
60 TIGR02235 menA_cyano-plnt 1,4- 84.2 11 0.00024 36.6 10.8 45 149-196 171-216 (285)
61 PRK13105 ubiA prenyltransferas 84.0 6.1 0.00013 38.5 8.8 57 146-205 167-224 (282)
62 PRK12884 ubiA prenyltransferas 83.5 9.7 0.00021 36.6 10.1 31 283-314 48-78 (279)
63 PRK06080 1,4-dihydroxy-2-napht 83.2 5.9 0.00013 38.4 8.5 48 145-195 174-222 (293)
64 PLN00012 chlorophyll synthetas 82.6 6.7 0.00015 39.8 8.8 33 148-180 261-294 (375)
65 PRK13592 ubiA prenyltransferas 82.0 29 0.00062 34.1 12.5 31 283-314 57-87 (299)
66 TIGR01474 ubiA_proteo 4-hydrox 81.7 16 0.00034 35.4 10.7 37 144-180 165-202 (281)
67 PRK07566 bacteriochlorophyll/c 80.8 6.9 0.00015 38.6 8.0 31 150-180 200-231 (314)
68 TIGR01476 chlor_syn_BchG bacte 80.0 8.1 0.00018 37.3 8.1 31 150-180 172-203 (283)
69 PRK12847 ubiA 4-hydroxybenzoat 80.0 8.2 0.00018 37.3 8.2 37 144-180 170-207 (285)
70 TIGR02056 ChlG chlorophyll syn 79.4 8.8 0.00019 37.7 8.2 32 149-180 193-225 (306)
71 TIGR01475 ubiA_other putative 78.9 14 0.0003 35.6 9.4 36 145-180 164-200 (282)
72 PRK12324 phosphoribose diphosp 78.2 11 0.00025 36.8 8.5 20 284-303 58-77 (295)
73 PRK12875 ubiA prenyltransferas 77.5 13 0.00029 36.1 8.7 52 146-200 172-224 (282)
74 PLN02809 4-hydroxybenzoate non 76.8 40 0.00087 32.8 11.9 30 285-314 58-88 (289)
75 PRK12887 ubiA tocopherol phyty 76.6 15 0.00032 36.2 8.8 32 145-176 188-220 (308)
76 PRK12392 bacteriochlorophyll c 76.5 12 0.00025 37.4 8.2 35 146-180 187-222 (331)
77 COG0382 UbiA 4-hydroxybenzoate 75.7 20 0.00044 34.6 9.5 32 283-314 58-90 (289)
78 PRK13106 ubiA prenyltransferas 75.5 9.5 0.00021 37.4 7.2 36 144-179 182-218 (300)
79 TIGR00751 menA 1,4-dihydroxy-2 75.0 14 0.0003 36.0 8.1 44 149-195 174-218 (284)
80 PRK12871 ubiA prenyltransferas 74.9 16 0.00034 35.8 8.5 36 145-180 181-217 (297)
81 PRK12888 ubiA prenyltransferas 74.8 38 0.00082 32.9 11.1 36 145-180 165-201 (284)
82 PF01040 UbiA: UbiA prenyltran 74.0 19 0.00041 33.5 8.6 32 283-314 34-66 (257)
83 PRK09573 (S)-2,3-di-O-geranylg 74.0 25 0.00054 33.8 9.6 31 283-314 48-78 (279)
84 PRK12848 ubiA 4-hydroxybenzoat 71.0 56 0.0012 31.6 11.3 37 144-180 167-204 (282)
85 PRK12882 ubiA prenyltransferas 70.6 28 0.0006 33.4 9.1 29 285-314 51-79 (276)
86 PRK12886 ubiA prenyltransferas 67.6 18 0.00038 35.3 7.0 35 146-180 169-204 (291)
87 PRK12883 ubiA prenyltransferas 65.9 40 0.00087 32.3 9.1 28 286-314 51-78 (277)
88 PRK05951 ubiA prenyltransferas 65.0 33 0.00072 33.4 8.4 34 150-186 182-216 (296)
89 PRK12870 ubiA 4-hydroxybenzoat 64.2 32 0.0007 33.4 8.1 38 144-181 171-209 (290)
90 PRK04214 rbn ribonuclease BN/u 63.9 61 0.0013 33.1 10.5 18 149-166 115-132 (412)
91 PRK12869 ubiA protoheme IX far 62.9 1.1E+02 0.0023 29.5 11.5 32 283-314 47-79 (279)
92 PRK08238 hypothetical protein; 60.9 40 0.00086 35.4 8.5 32 283-314 237-269 (479)
93 PRK13595 ubiA prenyltransferas 60.4 1.8E+02 0.0038 28.6 12.8 22 285-306 60-81 (292)
94 PRK12873 ubiA prenyltransferas 59.0 55 0.0012 32.0 8.7 31 284-314 56-87 (294)
95 PRK12874 ubiA prenyltransferas 58.1 1.1E+02 0.0023 29.9 10.6 36 145-180 173-209 (291)
96 PRK12895 ubiA prenyltransferas 56.1 1.6E+02 0.0034 28.7 11.3 36 144-179 164-200 (286)
97 TIGR01473 cyoE_ctaB protoheme 54.7 83 0.0018 30.2 9.1 31 284-314 47-78 (280)
98 PRK12878 ubiA 4-hydroxybenzoat 53.0 1.8E+02 0.0039 28.6 11.3 35 146-180 199-234 (314)
99 COG1295 Rbn Ribonuclease BN fa 52.2 1.9E+02 0.0042 28.2 11.3 22 145-166 112-133 (303)
100 PRK04375 protoheme IX farnesyl 51.9 2.2E+02 0.0048 27.6 11.6 31 284-314 56-87 (296)
101 PRK13362 protoheme IX farnesyl 51.4 80 0.0017 31.0 8.5 32 283-314 58-90 (306)
102 PRK11383 hypothetical protein; 50.7 1.7E+02 0.0037 25.5 9.6 14 287-300 118-131 (145)
103 PRK12876 ubiA prenyltransferas 44.3 1.3E+02 0.0029 29.5 8.7 28 287-314 62-90 (300)
104 PRK01637 hypothetical protein; 43.8 2.8E+02 0.006 26.7 10.9 21 147-167 105-125 (286)
105 PLN02776 prenyltransferase 43.4 1.8E+02 0.004 29.1 9.6 31 284-314 41-72 (341)
106 PLN02878 homogentisate phytylt 41.3 83 0.0018 30.7 6.6 42 149-193 166-208 (280)
107 TIGR02748 GerC3_HepT heptapren 35.9 4.3E+02 0.0094 25.9 13.5 50 146-198 70-119 (319)
108 COG4147 DhlC Predicted symport 32.4 70 0.0015 33.6 4.8 53 142-201 356-408 (529)
109 COG4125 Predicted membrane pro 32.3 2.6E+02 0.0057 24.3 7.4 23 146-168 48-70 (149)
110 PF06645 SPC12: Microsomal sig 27.2 2E+02 0.0043 22.2 5.5 45 313-357 5-50 (76)
111 PF00348 polyprenyl_synt: Poly 26.1 5.6E+02 0.012 24.1 13.4 56 144-202 38-93 (260)
112 PF03208 PRA1: PRA1 family pro 23.5 4.7E+02 0.01 22.3 11.0 11 200-210 54-64 (153)
113 PF03631 Virul_fac_BrkB: Virul 22.8 6.2E+02 0.014 23.5 12.4 20 145-164 82-101 (260)
114 PF04341 DUF485: Protein of un 22.7 3.9E+02 0.0085 21.1 7.7 38 133-170 52-89 (91)
115 PLN02890 geranyl diphosphate s 22.1 8.9E+02 0.019 25.0 13.5 51 145-198 167-217 (422)
116 PF03369 Herpes_UL3: Herpesvir 22.1 1.5E+02 0.0032 25.2 4.1 30 22-54 24-54 (134)
117 PF04971 Lysis_S: Lysis protei 21.5 81 0.0018 24.0 2.2 29 143-171 36-64 (68)
118 PRK10581 geranyltranstransfera 20.2 1.1E+02 0.0025 29.8 3.6 40 282-321 213-263 (299)
No 1
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=4.2e-49 Score=384.65 Aligned_cols=290 Identities=29% Similarity=0.465 Sum_probs=240.7
Q ss_pred chhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHHHHHHHHHhh----hhhccc
Q 016572 89 APSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCS----LNQICD 163 (387)
Q Consensus 89 ~~~~~~~~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~----iND~~D 163 (387)
|++.++++.+.+++|+|++|||+++++.++++.+.++|...... ..... +...++.++++.++|+ +|||+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~----~~~~l~~~~~~~~~nv~i~~iNd~~D 77 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALAN----LGLLLGAWIACLCGNVYIVGLNQLTD 77 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHH----HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 46677788889999999999999999999988777766432221 11112 2334444555555555 999999
Q ss_pred ccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHH
Q 016572 164 VEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTL 243 (387)
Q Consensus 164 ~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i 243 (387)
+|+|++|||+||+++|++|+++++.+.+++.++++++++.+|+..+.++ +++.++++.||. ||+|+||+++.+++++
T Consensus 78 ~~iD~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i 154 (308)
T PRK12887 78 IEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYSL--PPIRLKRFPLLAALCI 154 (308)
T ss_pred HHHHhcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcC--CchhhcccchhHHHHH
Confidence 9999999999999999999999999999999999999999997766555 578889999998 9999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHH
Q 016572 244 VILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVN 323 (387)
Q Consensus 244 ~~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ 323 (387)
+..+|..+.+|.+.+.... .+....++...+++.++.++|+.+++++||++|+|||++.|+||+|+++|++++.+++..
T Consensus 155 ~~~~g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ 233 (308)
T PRK12887 155 FTVRGVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCW 233 (308)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHH
Confidence 8888877778876643222 222334455666666777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhcc
Q 016572 324 MMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQASD 386 (387)
Q Consensus 324 l~~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~iw~lf~ 386 (387)
++.++|+..++.+......+...++.++|++.+.++++|.+++|.+|+++..+||||||||||
T Consensus 234 ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~ 296 (308)
T PRK12887 234 VLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFF 296 (308)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 999999998888777666666677779999999999999999999999999999999999997
No 2
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=4.5e-49 Score=373.50 Aligned_cols=264 Identities=42% Similarity=0.800 Sum_probs=236.0
Q ss_pred HHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHHHH
Q 016572 123 CFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAF 202 (387)
Q Consensus 123 ~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~ 202 (387)
.++|.+..+++++..+.+.+.+++++.+++.+...+|||+|+|+||+|||+||+|||++|+++|+.+..++.++|+.+++
T Consensus 7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~ 86 (280)
T PLN02878 7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW 86 (280)
T ss_pred hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556655677788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHH
Q 016572 203 LSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMS 282 (387)
Q Consensus 203 ~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~ 282 (387)
.+|+++++.++..+++++++||..+||+|+||++++...++....|...++|++.|+++.++|++..++++.++..+++.
T Consensus 87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~ 166 (280)
T PLN02878 87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMC 166 (280)
T ss_pred HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHH
Confidence 99988777776677789999998779999999999988887777777888999999888888865555556666666777
Q ss_pred HHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 016572 283 IYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLR 362 (387)
Q Consensus 283 l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~ 362 (387)
++.++++++||++|+|||++.|++|+|+++|++++.+++..++.++|+..++.|...+..+...++..||++++..+|+|
T Consensus 167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~r 246 (280)
T PLN02878 167 FFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQR 246 (280)
T ss_pred HHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999988888888777788889999999999999999
Q ss_pred HHHcCCCCHHhHHHHHHHHHHhcc
Q 016572 363 SRKVDLDNFDSQFGFYMFLWQASD 386 (387)
Q Consensus 363 ~~~~d~~~~~~~~~F~~~iw~lf~ 386 (387)
.+++|++++++..+||||||||||
T Consensus 247 s~~vD~~sk~~i~~fY~fiwklfy 270 (280)
T PLN02878 247 AQSVDLSSKAAITSFYMFIWKLFY 270 (280)
T ss_pred hHhcCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1e-39 Score=314.69 Aligned_cols=259 Identities=16% Similarity=0.126 Sum_probs=210.4
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCcc
Q 016572 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL 176 (387)
Q Consensus 99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~RPl 176 (387)
++++|+|++||++.+.....+++|.++|.+..+ ++. .+++.+++++++++++|++||++|+|+|++|+| +||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 478999999999888888888899999854322 221 134456788999999999999999999999966 9999
Q ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHH
Q 016572 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (387)
Q Consensus 177 ~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~ 256 (387)
|+|++|++||+.+.+++.++++.+++.+|+.++.++. ....+...|+. +||+++++|+++|+..|.++.+|+.
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~ 149 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL 149 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999998877664 45656677876 8999999999999888876666654
Q ss_pred HHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016572 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336 (387)
Q Consensus 257 ~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g 336 (387)
+ +.|. ..+....+++++...+|+.++|++|++||+|+|++.|+||+|+++|++++.++...++.++.....+.|
T Consensus 150 A-----v~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g 223 (286)
T PRK12895 150 A-----VIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISG 223 (286)
T ss_pred H-----HcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHH
Confidence 3 2332 222223344556678899999999999999999999999999999999998777677777776666666
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhH-HHHHH
Q 016572 337 ATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQ-FGFYM 379 (387)
Q Consensus 337 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~-~~F~~ 379 (387)
.... +.+|+++.++.+.++.+|++.+|.+|+++| ..||.
T Consensus 224 ~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~ 263 (286)
T PRK12895 224 IYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFN 263 (286)
T ss_pred HHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5432 356778999999999999999999999999 66663
No 4
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.6e-38 Score=306.21 Aligned_cols=262 Identities=18% Similarity=0.191 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC-
Q 016572 94 EVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP- 172 (387)
Q Consensus 94 ~~~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~- 172 (387)
..+++++++|+|++||++.++...++++|+++|.++.+ ++.. +++++++.+++++++|++|||+|+|+|++|+|
T Consensus 9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT 83 (300)
T PRK13106 9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRT 83 (300)
T ss_pred hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence 34567899999999999999998888999999865433 3221 45577899999999999999999999999965
Q ss_pred -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHH
Q 016572 173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (387)
Q Consensus 173 -~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~ 251 (387)
+||+|+|++|++||+.+.+++.+.++++++.+|+.+..++. ++.++.+.|+. +||+++++|+++|+.+|..+
T Consensus 84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~ 156 (300)
T PRK13106 84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAV 156 (300)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHH
Confidence 89999999999999999877777777778888988777664 45556778986 89999999999999888666
Q ss_pred HHHHHHHhhhHhhCCCC-----CChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHH
Q 016572 252 QIPYFIHSQTYLLGKPF-----EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMML 326 (387)
Q Consensus 252 ~~g~~~~~~~~v~g~~~-----~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~ 326 (387)
..|+.+. .|... ..+...+++++...+|+.++|++|++||+|+|++.|+||+|+++| +++.++...++.
T Consensus 157 ~~G~~a~-----~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~ 230 (300)
T PRK13106 157 FSGAVAV-----LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQL 230 (300)
T ss_pred HHHHHHH-----cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHH
Confidence 6665432 23211 111223334455678999999999999999999999999999999 888888887887
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHH
Q 016572 327 LGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY 378 (387)
Q Consensus 327 l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~ 378 (387)
++.++..+.+....+ +..|+++.++...++.+|+..++.+ +.|...|
T Consensus 231 ~~v~l~~~~~~~~~l---g~~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~F 277 (300)
T PRK13106 231 FSVVLDLLGDLYYGL---GPIAIAATILHGLIMAYAYYLASKK--GDFGRAF 277 (300)
T ss_pred HHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHhCCc--hHHHHHH
Confidence 777777777766544 3467778888889999999999987 6665544
No 5
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1e-37 Score=302.49 Aligned_cols=270 Identities=19% Similarity=0.189 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhccc---CCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC
Q 016572 94 EVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQS---LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN 170 (387)
Q Consensus 94 ~~~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~---~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n 170 (387)
++.++++++|+|++||++.+.+...++.|.++|... ...+++.. +++++++.+++++++|++|||+|+|+|++|
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKL---LILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHH---HHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 356678999999999999999988888888887521 11233322 456788999999999999999999999999
Q ss_pred CC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH
Q 016572 171 KP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248 (387)
Q Consensus 171 ~~--~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g 248 (387)
+| +||+|+|++|++||+.+++++.++++.+++.+|+.+..++ +..++...+||. +||++.++++++|+..|
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~ 151 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLG 151 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence 85 8999999999999999999888888888888898877666 356667889997 89999999999999888
Q ss_pred HHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016572 249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG 328 (387)
Q Consensus 249 ~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~ 328 (387)
.++.+|+.+ +.|. .+...+++.+...+|+.+.+++|+++|+|+|+++|++|+|+++|++++.++......+.
T Consensus 152 ~~~l~G~~a-----v~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~ 223 (291)
T PRK12874 152 LAPIAGVVA-----VLGE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA 223 (291)
T ss_pred HHHHHHHHH-----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence 777777654 3332 23334445566679999999999999999999999999999999999887765555444
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHh
Q 016572 329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQA 384 (387)
Q Consensus 329 ~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~iw~l 384 (387)
.+.....+..... ..+++++..+.+..++++++..+.+|++.|+.||.++-++
T Consensus 224 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~sn~~l 276 (291)
T PRK12874 224 VLFWLLFVWCAHL---GLFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTLNGYL 276 (291)
T ss_pred HHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 4444444433222 3456677888888899999999888888999999888765
No 6
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=7.8e-38 Score=302.72 Aligned_cols=262 Identities=17% Similarity=0.163 Sum_probs=204.6
Q ss_pred HHHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC-
Q 016572 97 KRKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP- 172 (387)
Q Consensus 97 ~~~l~~y~~L~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~- 172 (387)
++++++|+|++|.+++.+..+ ++++|.+++....+..++.. +++++++.+++++++|++||++|+|+|++|+|
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT 79 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVERT 79 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence 468999999999999887755 44566666532111112221 34577899999999999999999999999875
Q ss_pred -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHH
Q 016572 173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (387)
Q Consensus 173 -~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~ 251 (387)
+||+|+|++|++||+.+..++.++++.+++.+|+.++.++. +++++.++||. +||++++++++.|+..+.++
T Consensus 80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~ 152 (289)
T PLN02809 80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGA 152 (289)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HHhcCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999988987777764 56777889997 89999999999888777666
Q ss_pred HHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016572 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG 331 (387)
Q Consensus 252 ~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~ 331 (387)
.+|+.+ +.|. ... ...+.++....+|+.+++++++++|+|+|+++|++|+|+++|+++..++. .+..+.+..
T Consensus 153 l~g~~a-----v~g~-~~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~ 224 (289)
T PLN02809 153 LLGWAA-----VKGS-LDP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGG 224 (289)
T ss_pred HHHHHH-----HhCC-CCh-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHH
Confidence 666533 3342 111 12222455667899999999999999999999999999999999666655 456566666
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHH
Q 016572 332 AVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM 379 (387)
Q Consensus 332 ~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~ 379 (387)
+...|.....+ ..|++++++.+.++++|++.+|.+|+++|.++|.
T Consensus 225 l~~~g~~~~~~---~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~ 269 (289)
T PLN02809 225 LALSGYNAGLG---WPYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV 269 (289)
T ss_pred HHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66666654432 3556688888999999999999999999988864
No 7
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=6.2e-38 Score=304.00 Aligned_cols=261 Identities=19% Similarity=0.207 Sum_probs=206.7
Q ss_pred HHHHHHHHHHhhccchHHHHH---HHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 016572 96 VKRKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP 172 (387)
Q Consensus 96 ~~~~l~~y~~L~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~ 172 (387)
+++++++|+|++||+++.+.. +++++|.++|.++.+ ++.. +++++++.+++++++|++|||+|+|+|++|+|
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 456899999999999987766 477888888854433 2221 34577889999999999999999999988765
Q ss_pred --CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572 173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (387)
Q Consensus 173 --~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~ 250 (387)
+||+|+|++|++||+.++.++.++++.+++.+|+.++.+++ .+.++.++||. .||++.++++++|+.+|.+
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~ 152 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA 152 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence 89999999999999999999999999999999988777764 56667889997 7999999999998888866
Q ss_pred HHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016572 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG 330 (387)
Q Consensus 251 ~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~ 330 (387)
+..|+.+ +.|. .+...+++.+...+|+.+++++|+++|+|+|+++|++|+|+++|++++.++.. ++.+...
T Consensus 153 ~l~g~~a-----~~g~---~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~ 223 (290)
T PRK12870 153 VLISWSA-----VTGH---LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVG 223 (290)
T ss_pred HHHHHHH-----HcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHH
Confidence 6565543 2232 23344455566788999999999999999999999999999999998877655 4444555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHhHHHHHHH
Q 016572 331 GAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKV--DLDNFDSQFGFYMF 380 (387)
Q Consensus 331 ~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--d~~~~~~~~~F~~~ 380 (387)
.+...++..+. +..|+++..+...++.+|+..+ |.+|+++|++||..
T Consensus 224 ~l~~~~~~~~~---~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~ 272 (290)
T PRK12870 224 FLAILGVLLEL---HLPFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQ 272 (290)
T ss_pred HHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence 55556655443 2356677888889999999988 87789899887753
No 8
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=1.8e-37 Score=299.97 Aligned_cols=265 Identities=16% Similarity=0.160 Sum_probs=209.7
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcc
Q 016572 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL 176 (387)
Q Consensus 99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~--~~RPl 176 (387)
++++|+|++||++.......++.|.++|.++.+ ++. .+++++++.+++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 468999999999999988887889988854323 322 24567889999999999999999999999994 59999
Q ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHH
Q 016572 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (387)
Q Consensus 177 ~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~ 256 (387)
++|++|+++|+.+++++.+++++++..+|..+..++. ++.++.+.|+. +||++.++++++|+..|.++..|+.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~ 148 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV 148 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888888888888887766653 45666789986 8999999999999888876666654
Q ss_pred HHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016572 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336 (387)
Q Consensus 257 ~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g 336 (387)
+ +.|. .+.....+++.+...+|+.+.+++||++|+|+|+++|++|+|+++|+|++.++....+.++++...+.+
T Consensus 149 a-----~~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (282)
T TIGR01475 149 A-----VIGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG 222 (282)
T ss_pred H-----HhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2232 221133444455667899999999999999999999999999999999898887777777776666666
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHH-HHHHHHHh
Q 016572 337 ATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFG-FYMFLWQA 384 (387)
Q Consensus 337 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~-F~~~iw~l 384 (387)
..... +..|+++.++....++++.+..|.+|+++|++ ||.+..++
T Consensus 223 ~~~~~---g~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~~~~l 268 (282)
T TIGR01475 223 FYVGN---GYIALLALILIGLILAYEHYIVDPGDQSKIQRAFFYANGFL 268 (282)
T ss_pred HHhhC---cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhHHH
Confidence 55443 34566677777788899999999999998886 77776554
No 9
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.9e-37 Score=296.71 Aligned_cols=259 Identities=17% Similarity=0.072 Sum_probs=203.1
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcc-cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCc
Q 016572 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQ-SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP 175 (387)
Q Consensus 99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~-~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~RP 175 (387)
++++|+|++||++.+.....++.|...+.. ..+.+++. .+++.+++++++++++|++|||+|+|+|++|+| +||
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP 77 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE 77 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence 368999999998777665555555555431 11223332 245678899999999999999999999999985 999
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHH
Q 016572 176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY 255 (387)
Q Consensus 176 l~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~ 255 (387)
+|+|++|++||+.+++++.++++.++..+|+.++.++. ++++..+.|+. .||+++++++++|+..+.++..|+
T Consensus 78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~ 150 (284)
T PRK12888 78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAW 150 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888776663 45656789987 899999999999988776666665
Q ss_pred HHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHH
Q 016572 256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVA 335 (387)
Q Consensus 256 ~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~ 335 (387)
.+ +.|. .+...+++.+...+|+.+++++|++||+|+|+++|+||+|+++|+|++.++...++.+.++...+.
T Consensus 151 ~a-----~~g~---~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~ 222 (284)
T PRK12888 151 IA-----VTGT---WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWF 222 (284)
T ss_pred HH-----HcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHH
Confidence 43 2232 233445556677889999999999999999999999999999999999887766666666666666
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHH-HHH
Q 016572 336 GATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQF-GFY 378 (387)
Q Consensus 336 g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~-~F~ 378 (387)
+....++ +.|+++.++...++.||++.+|.+|++.|. .||
T Consensus 223 ~~~~~~~---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff 263 (284)
T PRK12888 223 GLAVGFG---ALWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFF 263 (284)
T ss_pred HHHhCCc---HHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 6554443 466778888999999999999999988886 655
No 10
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6e-37 Score=295.92 Aligned_cols=261 Identities=16% Similarity=0.129 Sum_probs=205.5
Q ss_pred HHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--
Q 016572 98 RKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-- 172 (387)
Q Consensus 98 ~~l~~y~~L~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~-- 172 (387)
+++++|+|++||+++.++.+ +.++|.+++....+ ++. ..++++++.+++++++|++||+.|+|+|++|+|
T Consensus 5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 79 (294)
T PRK12873 5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK 79 (294)
T ss_pred HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 56889999999998877754 55677777643222 221 245678999999999999999999999999986
Q ss_pred CCccccCccCHHHHHHHHHHHHHHHHHHHHHh----cHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH
Q 016572 173 YLPLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248 (387)
Q Consensus 173 ~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l----~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g 248 (387)
+||+|+|++|+++|+.+++++.++++.+++.+ |+.++.+++ ++++...+||. +||++.++++++|+..+
T Consensus 80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a 152 (294)
T PRK12873 80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQAILALCWG 152 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence 99999999999999999999999998887665 556666663 55667789997 89999999999998888
Q ss_pred HHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016572 249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG 328 (387)
Q Consensus 249 ~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~ 328 (387)
.++.+||.+ +.|. .++....+++++...+|+.++|++|+++|+|+|+++|++|+|+++|++ +......++.+.
T Consensus 153 ~~~l~gw~A-----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~ 225 (294)
T PRK12873 153 FAVLIPWAA-----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLT 225 (294)
T ss_pred hHHHHHHHH-----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHH
Confidence 777777643 3332 222223344446677899999999999999999999999999999975 445566677777
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCC--HHhHHHHHHH
Q 016572 329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDN--FDSQFGFYMF 380 (387)
Q Consensus 329 ~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~--~~~~~~F~~~ 380 (387)
.+++...|....++ +.|+++.++.+.++.+|++.+|.+| +++|.++|..
T Consensus 226 ~~ll~~~g~~~~l~---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~ 276 (294)
T PRK12873 226 SIFLALAAFIAQVG---FIFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSN 276 (294)
T ss_pred HHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHh
Confidence 77777778776553 4677888888899999999999988 5889776643
No 11
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.3e-36 Score=291.94 Aligned_cols=265 Identities=17% Similarity=0.158 Sum_probs=204.7
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--C
Q 016572 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y 173 (387)
Q Consensus 96 ~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~ 173 (387)
+.+++++|+|++||++......+++.|.++|..+.++ +. .+++++++.+++++++|++|||+|+|+|++|+| +
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 3478999999999999998888889999998543332 21 244577899999999999999999999999986 8
Q ss_pred CccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHH
Q 016572 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI 253 (387)
Q Consensus 174 RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~ 253 (387)
||+++|++|++||+.+.+.+.+.++.+++.+|+.+..+++ ++.++.++|+. +||++.+++++.|+..+.++..
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~ 151 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG 151 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence 9999999999999998766666666666778888776664 46666889997 7999999999999887766666
Q ss_pred HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016572 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV 333 (387)
Q Consensus 254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~ 333 (387)
|+.+ +.|. .+...+++.+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.++......+.+....
T Consensus 152 g~~a-----~~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~ 223 (291)
T PRK12886 152 AWIA-----IRGT---IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF 223 (291)
T ss_pred HHHH-----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence 6543 2232 2334455556667899999999999999999999999999999999998877666556665555
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HhHHH-HHHHHHH
Q 016572 334 VAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNF-DSQFG-FYMFLWQ 383 (387)
Q Consensus 334 l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~-~~~~~-F~~~iw~ 383 (387)
+.+..... +..|.++.++....+.++++..+.+|+ +.|++ |...+|.
T Consensus 224 ~~~~~~~~---~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~ 272 (291)
T PRK12886 224 ALGISAGL---GPWFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYI 272 (291)
T ss_pred HHHHHhcC---cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHH
Confidence 55544332 345666777777777788899988884 57877 5555543
No 12
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=2.6e-36 Score=291.83 Aligned_cols=259 Identities=16% Similarity=0.191 Sum_probs=201.5
Q ss_pred HHHHHHHHHhhccchHHHHH---HHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC-
Q 016572 97 KRKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP- 172 (387)
Q Consensus 97 ~~~l~~y~~L~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~- 172 (387)
++++++|+|++|++++.... +++++|..+|.+..++ +.. +++++++.+++++++|++|||+|+|+|++++|
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 46789999999988776554 4567788887543232 221 34567888999999999999999999998775
Q ss_pred -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHH
Q 016572 173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (387)
Q Consensus 173 -~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~ 251 (387)
+||+|+|++|+++|+.+++++.++++++++.+|+.+..++ +++.++.++|+. .||++.++++++|+..|.++
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~ 149 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI 149 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence 8999999999999999999999999998888898777666 356667889986 79999899999888888665
Q ss_pred HHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016572 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG 331 (387)
Q Consensus 252 ~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~ 331 (387)
.+|+.+ +.| . .+...+++.+...+|+...++.++++|+|+|+++|++|+|+++|+|++.++. .++.+....
T Consensus 150 ~~g~~a-----~~~-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~ 220 (282)
T PRK12848 150 PMAFAA-----VQG-S--VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG-LLQLATLAL 220 (282)
T ss_pred HHHHHH-----HhC-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHH-HHHHHHHHH
Confidence 566543 222 2 2334455556677899999999999999999999999999999999887765 344444444
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHH
Q 016572 332 AVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM 379 (387)
Q Consensus 332 ~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~ 379 (387)
..+.++.... +..|.++..+....+.+++..+|.+|+++|+++|.
T Consensus 221 ~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 265 (282)
T PRK12848 221 LAWAGWLLGL---GWAYYWGLLVAAALFVYQQKLIRDREREACFKAFL 265 (282)
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4445544333 34566778888899999999999999988877663
No 13
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=7.3e-36 Score=289.10 Aligned_cols=265 Identities=15% Similarity=0.173 Sum_probs=200.5
Q ss_pred HHHHHHHHHHhhccchHHHH---HHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 016572 96 VKRKLNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP 172 (387)
Q Consensus 96 ~~~~l~~y~~L~Rp~~~~~~---~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~ 172 (387)
+++++++|+|++||+++.+. .+++++|.++|.... ..++. ..++++++++++++++|++|||+|+|+|++|+|
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 34679999999999988764 467788888885432 12332 245678899999999999999999999998775
Q ss_pred --CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572 173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (387)
Q Consensus 173 --~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~ 250 (387)
+||+++|++|+++++.+++++.++++.+++.+|+..+.++ +++.++.+.||. .||++.+++++.|+.++.+
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~ 151 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMG 151 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence 8999999999999999999999999998888898777776 456777889997 8999989999988877755
Q ss_pred HHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016572 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG 330 (387)
Q Consensus 251 ~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~ 330 (387)
+..++.+ +.| . .+...+++.+...+|+.+.+++++++|+|+|+++|++|+|+++|++++.++........+.
T Consensus 152 ~l~~~~a-----~~g-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~ 223 (285)
T PRK12847 152 ILMAFAA-----VQN-Q--LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL 223 (285)
T ss_pred HHHHHHH-----HcC-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence 5555433 223 2 2334555566677899999999999999999999999999999999998877655444333
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHH-HHHHH
Q 016572 331 GAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY-MFLWQ 383 (387)
Q Consensus 331 ~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~-~~iw~ 383 (387)
. .+.++..+. ..+.| .++++...++++++..+|.+|+++|+++| ..++.
T Consensus 224 ~-~~~~~~~~~--~~~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~ 273 (285)
T PRK12847 224 W-LILGIISSL--HNIFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYV 273 (285)
T ss_pred H-HHHHHHhcC--cHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHH
Confidence 3 333333332 12233 35555667888999999998887776554 44443
No 14
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=7e-36 Score=292.39 Aligned_cols=264 Identities=19% Similarity=0.138 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHhhcccC---CCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 016572 94 EVVKRKLNAISHVT---RYYAQINIIVSVTSVCFLPVQSL---SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEID 167 (387)
Q Consensus 94 ~~~~~~l~~y~~L~---Rp~~~~~~~l~~l~g~~lA~~~~---~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D 167 (387)
..+++++++|+|++ ||+......+++++|.++|.... ...++. .+++++++.+++++++|++|||+|+|+|
T Consensus 24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD 100 (314)
T PRK12878 24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDID 100 (314)
T ss_pred hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33778999999999 77777778888999999985431 123322 2456788999999999999999999999
Q ss_pred ccCCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHH
Q 016572 168 KINKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVI 245 (387)
Q Consensus 168 ~~n~~--~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~ 245 (387)
++++| +||+++|++|+++++.++.++.++|+.+.+..|++.+.++ ++++++.++|+. +||++.++++..|+
T Consensus 101 ~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~Gl 173 (314)
T PRK12878 101 AKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLGL 173 (314)
T ss_pred cCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHHH
Confidence 98875 8999999999999999999999999998888888777666 467777899987 89999899988887
Q ss_pred HHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHH
Q 016572 246 LMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMM 325 (387)
Q Consensus 246 ~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~ 325 (387)
..+.++.+|+++ ..|. .+...+++++...+|+.+.+++++++|+|+|+++|++|+|+++|++++.++.. ++
T Consensus 174 ~~~~~~l~g~~a-----~~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~-~~ 244 (314)
T PRK12878 174 AFSWGALMGWAA-----HFGS---LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVL-FY 244 (314)
T ss_pred HHHHHHHHHHHH-----HhCC---CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHH-HH
Confidence 766666666543 2232 23334455556678999999999999999999999999999999999987764 33
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHH
Q 016572 326 LLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM 379 (387)
Q Consensus 326 ~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~ 379 (387)
.+......+.+..... .+.|+++.......+.+|+.++|.+|+++|+++|.
T Consensus 245 ~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~ 295 (314)
T PRK12878 245 GLAVLLMGLAFWLAGV---PLLALLGLLAAAAHLAWQIARLDIDDPDQCLRLFK 295 (314)
T ss_pred HHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHH
Confidence 3433333334333333 23555666666777899999999888888877664
No 15
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-35 Score=287.27 Aligned_cols=269 Identities=15% Similarity=0.153 Sum_probs=197.9
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcc----cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC-
Q 016572 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQ----SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP- 172 (387)
Q Consensus 98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~----~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~- 172 (387)
++++.|.|++|.++-+...-.++.|+.+|.. ..+-+++.-+..+++..++++++++++|++||++|+|+|++|+|
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT 81 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT 81 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence 4689999999995544443334678888841 01101111122345678999999999999999999999999996
Q ss_pred -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHH
Q 016572 173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (387)
Q Consensus 173 -~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~ 251 (387)
+||+|+|++|++||+.+.+++.++++++++.+|+.++.++. +++++.++||. +||+++++|+++|+..+..+
T Consensus 82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~~~~~~ 154 (300)
T PRK12876 82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLVYYLAI 154 (300)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHHHHHHH
Confidence 99999999999999999988888888888889998887774 56667789997 89999999999988777655
Q ss_pred HHHHHHHhhhHhhCCCCCChH--HHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016572 252 QIPYFIHSQTYLLGKPFEVTG--PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY 329 (387)
Q Consensus 252 ~~g~~~~~~~~v~g~~~~~~~--~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~ 329 (387)
..++.+ +.++..++.. ..++..+...+|..++|++|++||+|+|++.|+||+|+++|++++.++...++.+..
T Consensus 155 l~~~~A-----v~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~ 229 (300)
T PRK12876 155 LMNFFA-----IIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASA 229 (300)
T ss_pred HHHHHH-----HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHH
Confidence 555543 3333211100 112223344567779999999999999999999999999999988777777777777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHcCCCCHHhHHHHHHH
Q 016572 330 GGAVVAGATSTLMISKLVTIIGHIILALMM--WLRSRKVDLDNFDSQFGFYMF 380 (387)
Q Consensus 330 ~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l--~~~~~~~d~~~~~~~~~F~~~ 380 (387)
+...+.|.....++ ++|..+.++.+..+ .+|.+.+|.|+++.|..||..
T Consensus 230 ~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~ 280 (300)
T PRK12876 230 IAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLG 280 (300)
T ss_pred HHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHh
Confidence 66667776655433 34555665444433 445477888889999998865
No 16
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.8e-35 Score=285.60 Aligned_cols=263 Identities=17% Similarity=0.168 Sum_probs=198.6
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 016572 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (387)
Q Consensus 99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~s 178 (387)
++++|+|++||+++....+++++|.++|.+..+ ++. .+++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKI--DLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCc--chH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 478999999999999999999999988854222 222 245677899999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHH
Q 016572 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH 258 (387)
Q Consensus 179 G~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~ 258 (387)
|++|+++++.++.++.++++.+++.+|+.++.+++ ++.++.++|+. ++||++.++|+++|..+|..+..|+..
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~- 149 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA- 149 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999889988776664 56667889995 489999899999999888666666443
Q ss_pred hhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016572 259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT 338 (387)
Q Consensus 259 ~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~~ 338 (387)
+.+ . . ..+++.....+|+.+++++||++|+|+|+++|++|+|+++|+|++.++......+......+ ...
T Consensus 150 ----~~~---~-~-~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~-~~~ 219 (279)
T PRK09573 150 ----VFN---V-L-RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPL-PYF 219 (279)
T ss_pred ----Hcc---c-h-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 222 1 1 22333445567888999999999999999999999999999999988765554444333322 221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-HHHcCCCCHHhHHHH-HHHHHHhc
Q 016572 339 STLMISKLVTIIGHIILALMMWLR-SRKVDLDNFDSQFGF-YMFLWQAS 385 (387)
Q Consensus 339 ~~~~~~~~~~~~~~~i~~~~l~~~-~~~~d~~~~~~~~~F-~~~iw~lf 385 (387)
. ...++.|+++.++....+.++ .+..+.+|+++|+.. ..+.+.+|
T Consensus 220 ~--~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m~ 266 (279)
T PRK09573 220 L--GIFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIMI 266 (279)
T ss_pred H--HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1 123456666666666666666 444466677766554 55555543
No 17
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.3e-35 Score=282.15 Aligned_cols=256 Identities=19% Similarity=0.276 Sum_probs=199.0
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccc
Q 016572 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA 177 (387)
Q Consensus 98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~ 177 (387)
+++++|++++||+++....+++++|.++|.+.. ++. .+++++++.+++++++|++|||+|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~---~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGL---PLD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCC---chH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 578999999999999999999999998885432 211 24557789999999999999999999999999999999
Q ss_pred cCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHH
Q 016572 178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI 257 (387)
Q Consensus 178 sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~ 257 (387)
+|++|+++++.+++++.++++++++.+|+..+.++ +++.++++.||. ++||+++++++++++.+|.++..|+..
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~ 149 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA 149 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888898776665 456777899997 479999889999998888665555432
Q ss_pred HhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 016572 258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGA 337 (387)
Q Consensus 258 ~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~ 337 (387)
.+.. +...+++.....+|+.+.++++|++|+|+|+++|+||+|+++|+|++.++...++.+.++...+...
T Consensus 150 ------~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK12884 150 ------VGEL---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL 220 (279)
T ss_pred ------hCCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1221 1133444455668888999999999999999999999999999999988876666665554433332
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHhHHHH
Q 016572 338 TSTLMISKLVTIIGHIILALMMWLRS-RKVDLDNFDSQFGF 377 (387)
Q Consensus 338 ~~~~~~~~~~~~~~~~i~~~~l~~~~-~~~d~~~~~~~~~F 377 (387)
.. +..+.|.+...+....+.+++ +..+.+|+++++.+
T Consensus 221 ~~---~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (279)
T PRK12884 221 FG---IFNILYLAPVLVADLIFLYSAYSLLRSQDRETIRKV 258 (279)
T ss_pred HH---HhhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 22 223456666666667777775 56677777777776
No 18
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=8e-35 Score=282.40 Aligned_cols=265 Identities=25% Similarity=0.307 Sum_probs=209.5
Q ss_pred HHHHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 016572 96 VKRKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP 172 (387)
Q Consensus 96 ~~~~l~~y~~L~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~ 172 (387)
.+++++.+.+++|+++++.+.. +..+|..++....++ +...++++++++++++++|++||++|+|+|++|+|
T Consensus 6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r 80 (289)
T COG0382 6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR 80 (289)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence 4566677777777776666644 555666666422221 23356688899999999999999999999999999
Q ss_pred --CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572 173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (387)
Q Consensus 173 --~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~ 250 (387)
+||+|+|++|+++|+.+.+++.++++.+++.+|++++.+. +++.++.+.|+. +||.++++++++|..+|..
T Consensus 81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y~~------~Kr~~~~~~~~lg~~~~~~ 153 (289)
T COG0382 81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAYPF------LKRFTFLPQLVLGLAFGLG 153 (289)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998876666 467888999965 9999999999999988866
Q ss_pred HHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016572 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG 330 (387)
Q Consensus 251 ~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~ 330 (387)
+..|+.+ +.|. .+...++++++..+|+.+++++||++|+|+|++.|++|+|+.+|++++..++.... ...+
T Consensus 154 ~~~g~~a-----~~~~---~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~ 224 (289)
T COG0382 154 ALAGAAA-----VGGS---LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASA 224 (289)
T ss_pred HHHHHHH-----HhCc---cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHH
Confidence 6666543 2221 23345566677789999999999999999999999999999999999988877655 4444
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHH
Q 016572 331 GAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383 (387)
Q Consensus 331 ~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~iw~ 383 (387)
.....+..... ....+.+++.+....+++|+..+|.++++.|+.+|..-..
T Consensus 225 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (289)
T COG0382 225 LLVLLGLLAGL--LGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLL 275 (289)
T ss_pred HHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhH
Confidence 44444444332 2246788888889999999999999999999998876543
No 19
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.5e-35 Score=282.35 Aligned_cols=259 Identities=20% Similarity=0.193 Sum_probs=192.7
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 016572 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (387)
Q Consensus 99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~s 178 (387)
++++|+|++||++...+.+++++|.++|.+..+ +.. ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 478999999999999999999999999854322 111 135678899999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHH
Q 016572 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH 258 (387)
Q Consensus 179 G~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~ 258 (387)
|++|++|++.++.++.++++++++.+|+..+.++ +++.++.+.|+. |+||++.++|++++...|.++.+|+..
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~- 150 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA- 150 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999998998776666 356667889986 589999889999987777544444322
Q ss_pred hhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016572 259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT 338 (387)
Q Consensus 259 ~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~~ 338 (387)
.+.. .....+.+.+..++++++.+++||++|+|+|+++|+||+|+++|+|++.++....+.+...... .++.
T Consensus 151 -----~~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~-~~~~ 222 (276)
T PRK12882 151 -----VGTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASP-LPYL 222 (276)
T ss_pred -----hccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 2211 1112233344556778899999999999999999999999999999998876655544333222 2221
Q ss_pred hhhhhHHHHHHHHHHHHH-HHHHHHHHHcCCCCHHhHHHHHH
Q 016572 339 STLMISKLVTIIGHIILA-LMMWLRSRKVDLDNFDSQFGFYM 379 (387)
Q Consensus 339 ~~~~~~~~~~~~~~~i~~-~~l~~~~~~~d~~~~~~~~~F~~ 379 (387)
. ...+..|++...+.. ..+..+.+..|.+|++.|+++|.
T Consensus 223 ~--~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~ 262 (276)
T PRK12882 223 L--STFGLWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLK 262 (276)
T ss_pred H--HHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 112234555544444 44445677778888888876443
No 20
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=1.7e-34 Score=287.76 Aligned_cols=268 Identities=22% Similarity=0.210 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCC
Q 016572 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK 171 (387)
Q Consensus 95 ~~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~---l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~ 171 (387)
..++++++|++++||+++....++++.|++.. + .+++.. ...++.++++..++++++|++|||+|+|+|++|+
T Consensus 80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~ 155 (375)
T PLN00012 80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINE 155 (375)
T ss_pred cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCC
Confidence 35578999999999999999999999998853 2 222221 1123556778889999999999999999999999
Q ss_pred CCCccccCccCHHHHHHHHHHHHHHHHHHHHHh-------cHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHH
Q 016572 172 PYLPLASGELSMGTGIAICAGSALLSLALAFLS-------GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV 244 (387)
Q Consensus 172 ~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l-------~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~ 244 (387)
|+||+++|++++++++.+..++.++++.+++.+ +++.+.++ +++++++++||. ||+++||++++|++.+|
T Consensus 156 ~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~-l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG 232 (375)
T PLN00012 156 PYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLA-LGGSLLSYIYSA--PPLKLKQNGWIGNYALG 232 (375)
T ss_pred CCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-HHHHHHhhhhcC--CchhhhHhccHhHHHHH
Confidence 999999999999999997777666666665544 33344444 457778999999 99999999999999887
Q ss_pred HHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016572 245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM 324 (387)
Q Consensus 245 ~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 324 (387)
..++. ++++.. ..+.|. ++...+++.++.++|+.+++++||++|+|+|+++|++|+|+++|++++.+++..+
T Consensus 233 ~~~~~---lp~~~g--~a~~g~---~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~ 304 (375)
T PLN00012 233 ASYIS---LPWWAG--QALFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGS 304 (375)
T ss_pred HHHHH---HHHHHH--HHHcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHH
Confidence 66552 222221 123342 3334445555667889999999999999999999999999999999998887644
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHH
Q 016572 325 MLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFL 381 (387)
Q Consensus 325 ~~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~i 381 (387)
+.+..+. +.++.... ...+|......+...+.++..+...+||.++...|...
T Consensus 305 l~l~~l~--~~~~l~~~--~~~~y~~~~~~l~l~~l~~~~~~~~~~p~~~~~~~~~~ 357 (375)
T PLN00012 305 IDITQLS--VAGYLLAI--GKPYYALALLGLIIPQIFFQFKYFLPDPVKNDVKYQAS 357 (375)
T ss_pred HHHHHHH--HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4443322 22322221 12222222222333333333334445877777766544
No 21
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=9.4e-35 Score=280.78 Aligned_cols=262 Identities=18% Similarity=0.168 Sum_probs=196.8
Q ss_pred HHHHHHhhccchHHHH---HHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CC
Q 016572 100 LNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YL 174 (387)
Q Consensus 100 l~~y~~L~Rp~~~~~~---~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~R 174 (387)
+++|.|++|++++... .++.++|..+|....+..++.. .++++++.+++++++|++|||+|+|+|++|+| +|
T Consensus 1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R 77 (281)
T TIGR01474 1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSR 77 (281)
T ss_pred ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCC
Confidence 3679999998887665 4466788888754211112221 34567888999999999999999999998765 89
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHH
Q 016572 175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP 254 (387)
Q Consensus 175 Pl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g 254 (387)
|+|+|++|++|++.++.++.++++.+++.+|+.+..++ ++++++.+.||. +||++.+++++.|+..+.++..|
T Consensus 78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g 150 (281)
T TIGR01474 78 PLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMG 150 (281)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888998877776 467777899996 89999999999988877666666
Q ss_pred HHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016572 255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV 334 (387)
Q Consensus 255 ~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l 334 (387)
+++ +.|. .+...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++.+. ..++.++.....+
T Consensus 151 ~~a-----~~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~-~~~~~~~~~~~~~ 221 (281)
T TIGR01474 151 WAA-----VTGD---LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWL-GGLYALMILLLAL 221 (281)
T ss_pred HHH-----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHH-HHHHHHHHHHHHH
Confidence 543 2332 233344445566789999999999999999999999999999999886544 3344444444444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHH-HHHHH
Q 016572 335 AGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY-MFLWQ 383 (387)
Q Consensus 335 ~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~-~~iw~ 383 (387)
.+..... +..|.++..+....+.+++..+|.+|+++|+++| .++++
T Consensus 222 ~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 268 (281)
T TIGR01474 222 AGLIAGL---GPVYYLGLAAAALLLIRQIATLDIRDPENCLKLFKANNYV 268 (281)
T ss_pred HHHHhCC---cHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhHH
Confidence 4433332 3456677778888899999999888877766554 44444
No 22
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=1.4e-34 Score=283.57 Aligned_cols=224 Identities=21% Similarity=0.195 Sum_probs=175.1
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCc
Q 016572 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA-FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLP 175 (387)
Q Consensus 97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~-~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RP 175 (387)
++++++|++++||+++..++++++.|++.+.. .++... .+..++.++++..++++++|++|||+|+|+|++|+|+||
T Consensus 24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp 101 (314)
T PRK07566 24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP 101 (314)
T ss_pred chHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence 47789999999999999998888878776532 122211 111123456778889999999999999999999999999
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHH-HHHHH
Q 016572 176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL-ILQIP 254 (387)
Q Consensus 176 l~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~-~~~~g 254 (387)
+++|++|+++++.++.++.++++++++.+|++.+.++ +++++++++||. ||+++||+++++|+++|+.+|. ++..+
T Consensus 102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g 178 (314)
T PRK07566 102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAG 178 (314)
T ss_pred CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888997776665 457777899999 8999999998999999887763 32333
Q ss_pred HHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHH
Q 016572 255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGA 332 (387)
Q Consensus 255 ~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~ 332 (387)
+.. +.++ ..+...++..+...+++.+++++||++|+|+|+++|+||+|+++|++++.+++..++.++++..
T Consensus 179 ~~~-----~~~~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~ 249 (314)
T PRK07566 179 AAA-----FGAG--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV 249 (314)
T ss_pred HHH-----hccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence 221 2111 2233444445555678888999999999999999999999999999999988877766666554
No 23
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=4.2e-34 Score=281.13 Aligned_cols=265 Identities=17% Similarity=0.200 Sum_probs=189.6
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccC-CCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 016572 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSL-SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL 174 (387)
Q Consensus 96 ~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~-~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~R 174 (387)
..+++|+|+|++||+++. ..+++++|.++|.+.. +..... .+.+...++.+.+..+++|++|||+|+|+|++|+|.|
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~-~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDY-LLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 446799999999999888 6667778888875321 222211 1112223444456667899999999999999999999
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHHHHHHhcH-------HHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHH
Q 016572 175 PLASGELSMGTGIAICAGSALLSLALAFLSGS-------PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM 247 (387)
Q Consensus 175 Pl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~-------~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~ 247 (387)
|+++|++|+++++.+.+++.++++++++.++. +.++...+++++++++||. ||+++||+++.++..+|+.+
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~ 163 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY 163 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence 99999999999999999999988887776542 2222322456778899999 99999999888888888777
Q ss_pred HHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016572 248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL 327 (387)
Q Consensus 248 g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l 327 (387)
+....+++. ...|. .+...+++.+...+|+.+++++||++|+|+|++.|+||+|+++|++++.++......+
T Consensus 164 ~~~~~~~~~-----a~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~ 235 (331)
T PRK12392 164 GFITFLSAN-----ALFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL 235 (331)
T ss_pred HHHHHHHHH-----HHhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence 743333322 23342 3334445556667899999999999999999999999999999999998887655545
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHH
Q 016572 328 GYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGF 377 (387)
Q Consensus 328 ~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F 377 (387)
..+..+..++....+ ..+.+..++.+.++++|.+.. +||+.-.+|
T Consensus 236 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~l~--r~p~~~~~~ 280 (331)
T PRK12392 236 VFAVFAWLAWSWGFT---VLMYFILVGLVLNIVIQIQLY--RDPKGGISF 280 (331)
T ss_pred HHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHH--hChhhhhHH
Confidence 665555666555543 234455566667777777654 234444433
No 24
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=8.6e-34 Score=274.36 Aligned_cols=221 Identities=19% Similarity=0.155 Sum_probs=173.3
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccC
Q 016572 101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG 179 (387)
Q Consensus 101 ~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG 179 (387)
++|++++||+++....++++.|.++|.....+ +++.. .++.++++..++++++|++|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46899999999999999999999887322122 33321 2334667889999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcHHH-HHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHH
Q 016572 180 ELSMGTGIAICAGSALLSLALAFLSGSPA-VLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH 258 (387)
Q Consensus 180 ~ls~~~al~~~~~l~~l~l~l~~~l~~~~-l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~ 258 (387)
++|+++++.+.+++.++++++++.++.+. ..++ +++.+++++||. ||+|+||+++++++.+++.++.....+.+
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~-- 153 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGH-- 153 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHH--
Confidence 99999999999999999999888887665 3344 457778999999 99999999989999988766522111111
Q ss_pred hhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016572 259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV 334 (387)
Q Consensus 259 ~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l 334 (387)
...+. .++..++..+..++++.+++++||++|+|+|+++|+||+|+++|+|++++++..++.++++..+.
T Consensus 154 ---~~~~~---~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 223 (283)
T TIGR01476 154 ---AIFAP---LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223 (283)
T ss_pred ---HHhCC---CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 12221 23334444455667888899999999999999999999999999999999887777776655543
No 25
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=2.1e-33 Score=273.30 Aligned_cols=264 Identities=14% Similarity=0.059 Sum_probs=192.2
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCc
Q 016572 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLP 175 (387)
Q Consensus 98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~--~~RP 175 (387)
+++++|+|++||++.+...+++++|.++|.+. .+++.. +++++++.+++++++|++|||+|+|+|++|+ |+||
T Consensus 8 ~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp 82 (296)
T PRK04375 8 ATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP 82 (296)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence 57999999999999999999999999998543 233322 4567889999999999999999999999988 5999
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHH-HHHhhhccCCCCcccccccCCchhHHHHHHHH-HHHH
Q 016572 176 LASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAW-GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQ 252 (387)
Q Consensus 176 l~sG~ls~~~al~~~~~l~~l~l~l~~~-l~~~~l~l~~~~~-~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g-~~~~ 252 (387)
+++|++|++||+.++.++.++++++++. .|+.+..++. ++ +...++||. ++||+++ ++..++...| .++.
T Consensus 83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~-~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l 155 (296)
T PRK04375 83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTL-AGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL 155 (296)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH
Confidence 9999999999999999999999888755 5666655543 33 334668986 4899995 5555554444 5555
Q ss_pred HHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHH
Q 016572 253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGA 332 (387)
Q Consensus 253 ~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~ 332 (387)
+|+++ +.|. .+...+++.+...+|+...+..++++|+|||+++|+||+|+++|++++.++......+ .+..
T Consensus 156 ~g~~a-----~~g~---~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~-~~~~ 226 (296)
T PRK04375 156 IGWAA-----VTGS---LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVL-LVAV 226 (296)
T ss_pred HHHHH-----hCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHH-HHHH
Confidence 66543 2232 3334555566777899999999999999999999999999999999887765443333 2222
Q ss_pred HHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHcCCCCHHhH-HHHHHHHHHh
Q 016572 333 VVAGATSTLMISKLVTII-GHIILALMMWLRSRKVDLDNFDSQ-FGFYMFLWQA 384 (387)
Q Consensus 333 ~l~g~~~~~~~~~~~~~~-~~~i~~~~l~~~~~~~d~~~~~~~-~~F~~~iw~l 384 (387)
........ ..++.|.+ +.+..+..+.++++..+.+|++.| +.|+...|++
T Consensus 227 ~~~~~~~~--~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~ 278 (296)
T PRK04375 227 SLLPVLLG--MAGLLYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL 278 (296)
T ss_pred HHHHHHHh--ccCHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 22222211 11234444 455566667788888888777655 6788888875
No 26
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=2.5e-33 Score=270.64 Aligned_cols=264 Identities=16% Similarity=0.107 Sum_probs=188.6
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcc
Q 016572 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL 176 (387)
Q Consensus 99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~--~~RPl 176 (387)
++++|+|++||++.....+++++|.++|.+.. .++. .+++.+++.+++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC--CCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 47899999999998889899999999885432 2322 13457788899999999999999999999998 49999
Q ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH-HHHHHH
Q 016572 177 ASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIP 254 (387)
Q Consensus 177 ~sG~ls~~~al~~~~~l~~l~l~l~~~-l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g-~~~~~g 254 (387)
|+|++|+++|+.++.++.++++.+++. +|+.+.....+..++..++||. ++||+++.+++ ++...| .++..|
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~-v~~~~g~~~~l~g 149 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIV-IGGFAGNAAALAG 149 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHH-HHHHHHHHHHHHH
Confidence 999999999999999999999988877 7876543332345567789996 48999976544 444445 554444
Q ss_pred HHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016572 255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV 334 (387)
Q Consensus 255 ~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l 334 (387)
+.+ ..|. .+...+++.+...+|+.+.....+++|+|||+++|+||+|+++|++++.+....+..+.......
T Consensus 150 ~~a-----~~g~---~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~ 221 (279)
T PRK12869 150 YAS-----GTGS---LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILL 221 (279)
T ss_pred HHH-----HhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHH
Confidence 432 2232 23344455556667888877777889999999999999999999998887765554443333333
Q ss_pred HHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHcCCCCHHhH-HHHHHHHHHhc
Q 016572 335 AGATSTLMISKLVTIIGHIIL-ALMMWLRSRKVDLDNFDSQ-FGFYMFLWQAS 385 (387)
Q Consensus 335 ~g~~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~d~~~~~~~-~~F~~~iw~lf 385 (387)
.+. .. .+..|.++..+. +..+.++.+..+.+|++.| +.|..++|++.
T Consensus 222 ~~~-~~---~g~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~ 270 (279)
T PRK12869 222 LYL-YY---IGLIGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA 270 (279)
T ss_pred HHH-hh---ccHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence 322 12 234555555443 3445565666666666656 55888999873
No 27
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.5e-35 Score=272.90 Aligned_cols=271 Identities=15% Similarity=0.140 Sum_probs=210.0
Q ss_pred chhhHHHHHHHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 016572 89 APSFLEVVKRKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE 165 (387)
Q Consensus 89 ~~~~~~~~~~~l~~y~~L~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~ 165 (387)
.+++.+.-++++++|.|++|.++++++++ +..++.++|... + ..+.. --+-++-.+.++|++++|++||..|+|
T Consensus 53 sss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda-g-~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkd 129 (353)
T KOG1381|consen 53 SSSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-G-LLPSI-KMLALFGVGALLMRGAGCTINDLWDKD 129 (353)
T ss_pred chhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC-C-ccchh-HHHHHhcccHHHhccCCceehhhhhhh
Confidence 34555555677999999999999999866 556788777532 1 11111 113346688999999999999999999
Q ss_pred ccccCCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHH
Q 016572 166 IDKINKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTL 243 (387)
Q Consensus 166 ~D~~n~~--~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i 243 (387)
+|++++| .||+++|++|+++|+.+..+.+.+|+.+..++|+.+..++ ..++.+.+.|+. +||+++++++++
T Consensus 130 lD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vL 202 (353)
T KOG1381|consen 130 LDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVL 202 (353)
T ss_pred hhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHH
Confidence 9999987 8999999999999999999999999999999999887776 457777889998 999999999998
Q ss_pred HHHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHH
Q 016572 244 VILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVN 323 (387)
Q Consensus 244 ~~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~ 323 (387)
|..+ ++|...+ +.++.|. . .+...+-+++--..|++.+|++|++||.++|.++|+++.+.++|+++..++..
T Consensus 203 gltf----nwGAllG-w~A~~g~-~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g- 274 (353)
T KOG1381|consen 203 GLTF----NWGALLG-WCALKGS-L-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG- 274 (353)
T ss_pred hhhc----chhhhhc-chhhcCc-c-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-
Confidence 7543 3443331 1233332 1 12122333454567999999999999999999999999999999998888754
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHH
Q 016572 324 MMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMF 380 (387)
Q Consensus 324 l~~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~ 380 (387)
+-......+..+|+.+.+.| .|++++.+.+.++.+|..++|+||+++|+++|-+
T Consensus 275 f~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~s 328 (353)
T KOG1381|consen 275 FGAAQIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKS 328 (353)
T ss_pred hhHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHh
Confidence 33344455667777777654 5666788899999999999999999999998753
No 28
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.8e-33 Score=270.10 Aligned_cols=268 Identities=15% Similarity=0.158 Sum_probs=201.5
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-----C
Q 016572 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK-----P 172 (387)
Q Consensus 98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~-----~ 172 (387)
++++.|++.+||+++..+..++++|.++|+...+++++.. ++++++++++++.++|++|||+|+|.|..++ +
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 4689999999999999999999999999975445666533 4667899999999999999999955544443 6
Q ss_pred CCccccCccCHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH
Q 016572 173 YLPLASGELSMGTGIAICAGSALLSLALAF----LSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248 (387)
Q Consensus 173 ~RPl~sG~ls~~~al~~~~~l~~l~l~l~~----~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g 248 (387)
+||+++|++|+++++.++.++..+++.++. ..+...+.++ +++.++++.||. ||+++|+++ +|++.+++.+|
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g 154 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWS 154 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHH
Confidence 799999999999999998887666654432 2354445555 467889999998 999999887 79999999999
Q ss_pred HHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016572 249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG 328 (387)
Q Consensus 249 ~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~ 328 (387)
....+|.+.. .++. .+...+.......+++.....+|+++|+|+|++.|+||+|+++|+|++ ++...++..+
T Consensus 155 ~~~vlg~~~~-----~~~~--~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~ 226 (296)
T PRK05951 155 HMLVMGLIYV-----WLGN--LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP 226 (296)
T ss_pred HHHHHHHHHH-----HhCc--ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence 6666665432 2222 233344445556677788899999999999999999999999999999 6665666667
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHH
Q 016572 329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMF 380 (387)
Q Consensus 329 ~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~ 380 (387)
|+..+........++..+.+++++......+.+++++.|.++...|.+++..
T Consensus 227 ~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 227 YVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML 278 (296)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence 7665554444334444556666666666667777777787777778777765
No 29
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=3.2e-32 Score=266.00 Aligned_cols=223 Identities=22% Similarity=0.249 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCC
Q 016572 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK 171 (387)
Q Consensus 95 ~~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~---l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~ 171 (387)
..++++++|++++||+++....++++.|...+. ++++.. ...++.+++++.++++++|++|||+|+|.|++|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~ 86 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE 86 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence 345678999999999999999999888988642 222211 1113445677899999999999999999999999
Q ss_pred CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc-------HHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHH
Q 016572 172 PYLPLASGELSMGTGIAICAGSALLSLALAFLSG-------SPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV 244 (387)
Q Consensus 172 ~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~-------~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~ 244 (387)
|+||+++|++|+++++.+++++.++++++++.+. ++.+.++ +++++++++||. ||+++||++++|++.++
T Consensus 87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg 163 (306)
T TIGR02056 87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGSFIAFIYSA--PPLKLKQNGWLGNFALG 163 (306)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHHcC--ChhhhhhcccHHHHHHH
Confidence 9999999999999999999888888887766553 3344444 467778999999 99999999989998887
Q ss_pred HHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016572 245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM 324 (387)
Q Consensus 245 ~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 324 (387)
..++..+..+.+ .+.| +++...++..+..++|+.++++.||++|+|+|+++|+||+|+++|+|++.+++..+
T Consensus 164 ~~~~~~~~~~~~-----a~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l 235 (306)
T TIGR02056 164 ASYIALPWWAGH-----ALFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGA 235 (306)
T ss_pred HHHHHHHHHHHH-----HHhC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHH
Confidence 666532222211 1233 23334445555667789999999999999999999999999999999999988766
Q ss_pred HHHHHHHH
Q 016572 325 MLLGYGGA 332 (387)
Q Consensus 325 ~~l~~~~~ 332 (387)
+..++...
T Consensus 236 ~~~~~~~~ 243 (306)
T TIGR02056 236 IDIFQGLI 243 (306)
T ss_pred HHHHHHHH
Confidence 66655444
No 30
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=4.2e-32 Score=262.23 Aligned_cols=264 Identities=15% Similarity=0.094 Sum_probs=190.0
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcccc
Q 016572 101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPLAS 178 (387)
Q Consensus 101 ~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~--~~RPl~s 178 (387)
|+|+|++||+++....++++.|.++|.+.. +.++.. +++++++.+++++++|++|||+|+|+|++|+ |+||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 469999999999999999999999985432 133322 4557789999999999999999999999987 4999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHHH-hhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHH
Q 016572 179 GELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLT-GAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (387)
Q Consensus 179 G~ls~~~al~~~~~l~~l~l~l-~~~l~~~~l~l~~~~~~~l-~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~ 256 (387)
|++|+++++.+++++.++|+.+ .+..|+....++. ++.++ .++||. .+||++++++++.++..+.++..|+.
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~ 150 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWA 150 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999884 4457877665553 45543 789995 27999977666555433345445543
Q ss_pred HHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016572 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336 (387)
Q Consensus 257 ~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g 336 (387)
+ ..| . .+...+++.....+|+...+...+++|+|+|+++|+||+|+++|+|++.+..............+.+
T Consensus 151 a-----~~g-~--~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (280)
T TIGR01473 151 A-----VTG-S--ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA 222 (280)
T ss_pred H-----hcC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 123 2 2334444555667888888888889999999999999999999999887765443333222222222
Q ss_pred HHhhhhhHHHHHH-HHHHHHHHHHHHHHHHcCCC-CHH-hHHHHHHHHHHhc
Q 016572 337 ATSTLMISKLVTI-IGHIILALMMWLRSRKVDLD-NFD-SQFGFYMFLWQAS 385 (387)
Q Consensus 337 ~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~d~~-~~~-~~~~F~~~iw~lf 385 (387)
.... .++.|+ .+..+....+.++++..|.+ |++ ..+.|+.+.+++.
T Consensus 223 ~~~~---~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~ 271 (280)
T TIGR01473 223 FLGG---TGWLYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLA 271 (280)
T ss_pred HHhc---ccHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 2222 233444 56666777788888888776 554 5678888888763
No 31
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1.5e-31 Score=260.92 Aligned_cols=268 Identities=17% Similarity=0.170 Sum_probs=191.7
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CC
Q 016572 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YL 174 (387)
Q Consensus 97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~R 174 (387)
++++++|++++||+.+....++++.|.++|..+ +.++.. .+.++++.++.++++|++|||+|+|+|++++| +|
T Consensus 10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R 84 (306)
T PRK13362 10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR 84 (306)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence 367899999999999999999999999998433 234322 34566889999999999999999999998764 89
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHH
Q 016572 175 PLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI 253 (387)
Q Consensus 175 Pl~sG~ls~~~al~~~~~l~~l~l~l~-~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~ 253 (387)
|+|+|++|+++|+.+++++.++|+.++ +..|..+..++.+..++..++||. ++||++++++++.++..+.++.+
T Consensus 85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~ 159 (306)
T PRK13362 85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVV 159 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHH
Confidence 999999999999999999999998865 445766654543223335678995 38999999999888776777777
Q ss_pred HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016572 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV 333 (387)
Q Consensus 254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~ 333 (387)
|+.+. .| . .+...++++..+.+|+...+...+++|+|||+++|++|+|+++|++++.+... ++.+..+...
T Consensus 160 G~~a~-----~g-~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~-~~~~~~~~~s 230 (306)
T PRK13362 160 GYCAV-----TG-Q--FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV-LYILVFALVT 230 (306)
T ss_pred HHHHH-----cC-C--CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH-HHHHHHHHHH
Confidence 76542 23 2 23345555667788999999999999999999999999999999998876433 2333322222
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHc---CCCC-HHhHHHHHHHHHHhc
Q 016572 334 VAGATSTLMISKLVTIIGHIILALMMWLRSRKV---DLDN-FDSQFGFYMFLWQAS 385 (387)
Q Consensus 334 l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~---d~~~-~~~~~~F~~~iw~lf 385 (387)
...... +..++.|.+...+....+.+...+. +.+| +.+.+.|+.++|+|+
T Consensus 231 ~l~~~~--g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~yl~ 284 (306)
T PRK13362 231 ALLPLA--GYTGIGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSILTIT 284 (306)
T ss_pred HHHHHH--ccccHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 222221 1223445544444444444333322 2233 346788999999985
No 32
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=1.4e-31 Score=256.95 Aligned_cols=257 Identities=18% Similarity=0.161 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCch--HHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCC
Q 016572 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTP--AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPY 173 (387)
Q Consensus 96 ~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~--~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~ 173 (387)
+...++.+++++||.+|+.+..++++|...+.+ .+++ .. ++++++.....+.+.|.+|||+|+|+|++|+|+
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Confidence 345678899999999999999999999977743 2343 22 344566677889999999999999999999999
Q ss_pred CccccCccCHHHHHHHHHHHHHH----HHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHH
Q 016572 174 LPLASGELSMGTGIAICAGSALL----SLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL 249 (387)
Q Consensus 174 RPl~sG~ls~~~al~~~~~l~~l----~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~ 249 (387)
||+++|++|+++++.+...+.++ ++.+++.+|+..+.+. +++.++++.||. ||+|+|+++++++++. ..+|.
T Consensus 82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~ 157 (292)
T PRK13595 82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYAL 157 (292)
T ss_pred CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHH
Confidence 99999999999998865544433 4556777787766665 467788999999 9999999999988775 34454
Q ss_pred HHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016572 250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY 329 (387)
Q Consensus 250 ~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~ 329 (387)
+...+ ..+.|.. ..+.. .....+|+.+++++++++|+|+||+.|+||+|+++|+|++.+++..++.++.
T Consensus 158 p~~~~------~~~~g~~---~~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~ 226 (292)
T PRK13595 158 PLALP------ALALGAP---VPWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAG 226 (292)
T ss_pred HHHHH------HHHcCCc---chHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHH
Confidence 33322 1233421 11222 2344678899999999999999999999999999999999999887766655
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHHHHHH
Q 016572 330 GGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383 (387)
Q Consensus 330 ~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~~iw~ 383 (387)
+.+.... .+.. +. +.+....+..+.+ .|.+-++.-+.|-.|||.
T Consensus 227 ~~~~~~~--~~~~---~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 270 (292)
T PRK13595 227 ALLWPVS--RLTA---LA----LWLICGGMALALW-RRPTPETAHRLYPLSIVT 270 (292)
T ss_pred HHHHHhc--chHH---HH----HHHHHHHHHHHHh-cCCCHHHHhccchHHHHH
Confidence 4433322 1211 11 1111122222333 677778888999999984
No 33
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=2.1e-31 Score=257.01 Aligned_cols=205 Identities=22% Similarity=0.257 Sum_probs=161.6
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 016572 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (387)
Q Consensus 99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~s 178 (387)
++++|+|++||+++....++.+.|.+++.+..++ +.. .++++++.++.++++|++|||+|+|+|++|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~~---~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IKT---LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HHH---HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 3689999999999999988888999887543222 111 34466788889999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHH
Q 016572 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH 258 (387)
Q Consensus 179 G~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~ 258 (387)
|++++++++.++.++.++|+.+++.+|++.+.+++ ++.+++++|+. ++|++++++|+++|..+|..+..|+..
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a- 149 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA- 149 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999988888987776663 56677899997 478888889999998888444444332
Q ss_pred hhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016572 259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM 324 (387)
Q Consensus 259 ~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 324 (387)
+ +. .+...+.. ...+++.++.++.||++|+|+|+++|+||+|+++|++++.++....
T Consensus 150 ----~-~~---~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 150 ----V-GR---IGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred ----h-cc---ccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence 1 21 12222221 2234566788899999999999999999999999999988875543
No 34
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=5.1e-31 Score=256.17 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=177.8
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccccc--CCCCC
Q 016572 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDKI--NKPYL 174 (387)
Q Consensus 99 ~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~--~~D~~--n~~~R 174 (387)
.+++|++++||+++..+.+++++|.++|... ..+++.. ++++++++++++.++|.+|||+|+ |.|+. ++|+|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 3688999999999999999999999998532 3345432 456788999999999999999998 56754 56799
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHHHHHH----hcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572 175 PLASGELSMGTGIAICAGSALLSLALAFL----SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (387)
Q Consensus 175 Pl~sG~ls~~~al~~~~~l~~l~l~l~~~----l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~ 250 (387)
|+++|++|+++++.++.++.+++++++.. .+.+.+.++ +++.++++.||. ||+++|+++ ++|+.+++.+|..
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~ 153 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLG-LLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV 153 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence 99999999999998888777766555443 355444444 457778899999 898899887 7999999888855
Q ss_pred HHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016572 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG 330 (387)
Q Consensus 251 ~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~ 330 (387)
...+.+. +..+ ..+...++..++..+|+..++++||++|+|+|+++|+||+|+++|+++++++...++.++|+
T Consensus 154 ~~~~~~~-----~~~~--~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~ 226 (293)
T PRK06080 154 IVLGTYY-----LQAG--TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL 226 (293)
T ss_pred HHHHHHH-----HhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence 4444332 1111 23344555566777889999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHhhhh
Q 016572 331 GAVVAGATSTLM 342 (387)
Q Consensus 331 ~~~l~g~~~~~~ 342 (387)
..+........+
T Consensus 227 ~~~~~~~~~~~~ 238 (293)
T PRK06080 227 CIVLLALLGLAS 238 (293)
T ss_pred HHHHHHHHhhhh
Confidence 776655443333
No 35
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.98 E-value=4.3e-30 Score=249.64 Aligned_cols=259 Identities=17% Similarity=0.084 Sum_probs=176.3
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC-------
Q 016572 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN------- 170 (387)
Q Consensus 98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n------- 170 (387)
+++++|++++||+++.....++.+|.++|....+.+++.. +++.++++.++..++|++|||+|+|.|++|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 5689999999999888887777788888732112234322 222345556666778999999999999865
Q ss_pred --C--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHHHhhhccCCCCcccccccCCch--h
Q 016572 171 --K--PYLPLASGELSMGTGIAICAGSALLSLALAFLSGS----PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMA--P 240 (387)
Q Consensus 171 --~--~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~----~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~--~ 240 (387)
| ++||+++|++|+++++.+.+++.++|++++..++. ..+.++ +.+.++++.|+. .||.+.++ .
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p~~~ 152 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYPVAQ 152 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------ccccccccHHH
Confidence 3 48999999999999999999999999888766543 222222 345567788886 35543232 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHH
Q 016572 241 FTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPL 320 (387)
Q Consensus 241 l~i~~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l 320 (387)
++.++..+.++..| +. ..|. .+...++..++..+|+.+++++||++|+|||+++|+||+|+++|++++.+.
T Consensus 153 l~G~~~~~~~~~~g-~~-----~~g~---~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~ 223 (297)
T PRK12871 153 LLGRTDFTLFPAAG-YL-----CYGQ---PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYW 223 (297)
T ss_pred HHHHHHHHHHHHHH-HH-----HhCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHH
Confidence 33333334333333 21 2332 233444555667789999999999999999999999999999999988766
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHhHHHHHH
Q 016572 321 CVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM 379 (387)
Q Consensus 321 ~~~l~~l~~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~~~~~~~F~~ 379 (387)
...+..+.... ..+.....++ ..+....++.+.++.+|.+..+.+|++.|.+-|.
T Consensus 224 i~~~~~l~~l~--~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 278 (297)
T PRK12871 224 VTGFTALHFLA--AIFFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILP 278 (297)
T ss_pred HHHHHHHHHHH--HHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 54444343322 2233333322 2344444667778899999999999999966554
No 36
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=1.7e-29 Score=247.59 Aligned_cols=225 Identities=12% Similarity=0.032 Sum_probs=175.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC----CCCc
Q 016572 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK----PYLP 175 (387)
Q Consensus 100 l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~----~~RP 175 (387)
++.|++++||++...+.++++.|.++|....+++++.. ++++++++++++.++|++|||+|++.|+.++ ++|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 67899999999999999999999999864434566533 4567888899999999999999987665554 5799
Q ss_pred cccCccCHHHHHHHHHHHHHHHHH----HHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHH
Q 016572 176 LASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (387)
Q Consensus 176 l~sG~ls~~~al~~~~~l~~l~l~----l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~ 251 (387)
+++|.+++++++..+.++.+++++ +.+..|+..+.++ +++++.++.||. ||+++||++ +||+.+++.+|..+
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~ig-l~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~ 155 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIG-LICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI 155 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-HHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence 999999999999988877777666 4555675555555 578889999999 999999999 89999999999555
Q ss_pred HHHHHHHhhhHhhCCCCCChHHH--------------------HHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhh
Q 016572 252 QIPYFIHSQTYLLGKPFEVTGPF--------------------VFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVL 311 (387)
Q Consensus 252 ~~g~~~~~~~~v~g~~~~~~~~~--------------------~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~ 311 (387)
..|.+.. ..+. ++... ++..+...+.+...++.||++|+|+|+++|+||+|++
T Consensus 156 v~g~~yv-----~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~ 228 (317)
T PRK13387 156 FLLAVYI-----NTNT--ITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYY 228 (317)
T ss_pred HHHHHHH-----hcCC--CchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeee
Confidence 5554331 1111 11111 1133444566777799999999999999999999999
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHH
Q 016572 312 LGKEKVLPLCVNMMLLGYGGAVVAGAT 338 (387)
Q Consensus 312 lG~~~a~~l~~~l~~l~~~~~~l~g~~ 338 (387)
+|+|++.++...++.++|+..+.....
T Consensus 229 lG~~~a~~l~~~l~~~a~l~~~~~v~~ 255 (317)
T PRK13387 229 IGREKGVVLFAILFYASYLAIAVIVLM 255 (317)
T ss_pred EcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888776554433
No 37
>PLN02776 prenyltransferase
Probab=99.96 E-value=8.7e-28 Score=235.62 Aligned_cols=256 Identities=14% Similarity=0.057 Sum_probs=185.3
Q ss_pred hhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCccccCccCH
Q 016572 106 VTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSM 183 (387)
Q Consensus 106 L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~RPl~sG~ls~ 183 (387)
++||+......++.+.|+++|.+..+ ++. .+++++++++++++++|++||++|+|+|++|+| +||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 57898888888999999999854323 222 245577899999999999999999999999886 99999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHHH-hhhccCCCCcccccccCCchhHHHHHHHH-HHHHHHHHHHhh
Q 016572 184 GTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLT-GAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIPYFIHSQ 260 (387)
Q Consensus 184 ~~al~~~~~l~~l~l~l-~~~l~~~~l~l~~~~~~~l-~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g-~~~~~g~~~~~~ 260 (387)
++|+.+++++.++|+.+ ++.+|+.+..++. +++++ ..+||. +||++++. .++|...| .++.+||.+
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~-~~~~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw~A--- 144 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGA-GNILLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLMGWAA--- 144 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHh------HccCCchh-HHHHHHHHHHHHHHHHHH---
Confidence 99999999999988854 5668888777764 44433 568996 89999764 68888878 677777654
Q ss_pred hHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhc--cccHHHHHHHHHHHHHHHHHHHHHH
Q 016572 261 TYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLG--KEKVLPLCVNMMLLGYGGAVVAGAT 338 (387)
Q Consensus 261 ~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG--~~~a~~l~~~l~~l~~~~~~l~g~~ 338 (387)
+.|. ++...+++++.+.+|+........++|+|||+++|++++|+.-+ .++++.+....+.+..+.++..+..
T Consensus 145 --vtg~---~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g 219 (341)
T PLN02776 145 --ASGQ---LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWG 219 (341)
T ss_pred --HcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 23345556667788998878888888999999999999999763 4555444332222222222221111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCC-HHhHHHHHHHHHHhc
Q 016572 339 STLMISKLVTIIGHIILALMMWLRSRKVDLDN-FDSQFGFYMFLWQAS 385 (387)
Q Consensus 339 ~~~~~~~~~~~~~~~i~~~~l~~~~~~~d~~~-~~~~~~F~~~iw~lf 385 (387)
. ...++++++.++.+..+.+.++..+.+| +...+.|+.|++||.
T Consensus 220 ~---~~~~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~ 264 (341)
T PLN02776 220 V---TSSPFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLP 264 (341)
T ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1 1234566666666777777777775544 567788999999985
No 38
>PLN02922 prenyltransferase
Probab=99.96 E-value=3.2e-27 Score=231.07 Aligned_cols=235 Identities=17% Similarity=0.127 Sum_probs=173.6
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCCc
Q 016572 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP 175 (387)
Q Consensus 98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~--~D~~n~~~RP 175 (387)
++++.|++.+||+++..+++++++|.++|......+++.. ++++++++++++.++|.+|||+|++ .|+.++..+.
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 4678899999999999999999999999975435677543 5668899999999999999999975 6774332211
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHH-----hcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572 176 LASGELSMGTGIAICAGSALLSLALAFL-----SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (387)
Q Consensus 176 l~sG~ls~~~al~~~~~l~~l~l~l~~~-----l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~ 250 (387)
-..| ++++++..++++.++++...+. .+++.+.++ +++++.++.||. ||+++|+++ +|++.+++.+|..
T Consensus 90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l 163 (315)
T PLN02922 90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPL 163 (315)
T ss_pred Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHH
Confidence 2234 8999888877766665532221 244444444 578889999999 999999999 7999999999955
Q ss_pred HHHHHHHHhhhHhhCC-CC---CChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHH
Q 016572 251 LQIPYFIHSQTYLLGK-PF---EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMML 326 (387)
Q Consensus 251 ~~~g~~~~~~~~v~g~-~~---~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~ 326 (387)
+..+.+.. ++...+. .. .++...++..+...+++..+.++||++|+|+|++.|+||+|+++|++++.++...++.
T Consensus 164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~ 242 (315)
T PLN02922 164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL 242 (315)
T ss_pred HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence 55654432 1110101 00 1234455556677788889999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHhhhh
Q 016572 327 LGYGGAVVAGATSTLM 342 (387)
Q Consensus 327 l~~~~~~l~g~~~~~~ 342 (387)
.+|+..+........+
T Consensus 243 ~~y~~~i~~v~~~~~p 258 (315)
T PLN02922 243 LLYSLLAALGLLKALP 258 (315)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 8887776655443333
No 39
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.96 E-value=3.5e-27 Score=229.65 Aligned_cols=231 Identities=14% Similarity=0.011 Sum_probs=176.8
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCC
Q 016572 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYL 174 (387)
Q Consensus 97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~--~D~~n~~~R 174 (387)
+++++.|++.+||+++..++.++++|.++|+...+++++.. ++++++++++++.++|.+|||+|++ .|+. +++
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~- 83 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH- 83 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence 36788999999999999999999999999965445677543 5668899999999999999999986 6873 332
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHHH----HHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHH
Q 016572 175 PLASGELSMGTGIAICAGSALLSLAL----AFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (387)
Q Consensus 175 Pl~sG~ls~~~al~~~~~l~~l~l~l----~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~ 250 (387)
...++..+++++...+.++.++++++ .+..|++.+.++ +++++.++.||. ||+++|+++ +||+.+++.+|..
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l 159 (304)
T PRK07419 84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPL 159 (304)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHH
Confidence 23455557888888877766666554 344465444455 568889999999 999999999 6999999999965
Q ss_pred HHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016572 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG 330 (387)
Q Consensus 251 ~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~ 330 (387)
...+.+. +..+ +++...++..+...+.+..+..+||++|+|+|+++|+||+|+++|+|++++++..++..+|+
T Consensus 160 ~v~g~~y-----v~t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~ 232 (304)
T PRK07419 160 AVAAALY-----SQTP--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA 232 (304)
T ss_pred HHHHHHH-----HhcC--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence 5555443 2222 24444555556667778888999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHhhhhh
Q 016572 331 GAVVAGATSTLMI 343 (387)
Q Consensus 331 ~~~l~g~~~~~~~ 343 (387)
..+........++
T Consensus 233 ~~i~~v~~g~~p~ 245 (304)
T PRK07419 233 LELLPVLLGFWPW 245 (304)
T ss_pred HHHHHHHHhhhHH
Confidence 7765544433343
No 40
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.96 E-value=2.7e-27 Score=228.66 Aligned_cols=215 Identities=14% Similarity=0.058 Sum_probs=167.1
Q ss_pred ccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccc--CCCCCccccCccCH
Q 016572 108 RYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKI--NKPYLPLASGELSM 183 (387)
Q Consensus 108 Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~--~D~~--n~~~RPl~sG~ls~ 183 (387)
||+++..++.++++|.++|... ..+++.. ++++++++++++.++|.+|||+|.+ .|+. .+|.|++++|.+++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~-~~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWL-HAFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 8999999999999999999654 3676543 5667889999999999999999984 3543 35689999999999
Q ss_pred HHHHHHHHHHHHHHHHHH----HHhcH-----HHH-HHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHH
Q 016572 184 GTGIAICAGSALLSLALA----FLSGS-----PAV-LCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI 253 (387)
Q Consensus 184 ~~al~~~~~l~~l~l~l~----~~l~~-----~~l-~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~ 253 (387)
++++..++++.+++++++ +..++ +.+ .++ +++++.++.||. ||+++|+++ +||+.+++.+|....+
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg-~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~ 152 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG-ALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVL 152 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH-HHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHH
Confidence 999988877776555443 33343 133 334 467888999999 999999999 7999999999965556
Q ss_pred HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016572 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV 333 (387)
Q Consensus 254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~ 333 (387)
|.+. +..+ .++...++..+...+++..+..+||++|+|+|+++|+||+|+++|+|+++++...++..+|+..+
T Consensus 153 g~~y-----vq~~--~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~ 225 (284)
T TIGR00751 153 GTQY-----LQAH--RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF 225 (284)
T ss_pred HHHH-----HhcC--CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence 5443 2222 23444444445566778888999999999999999999999999999999999888888887765
Q ss_pred HHHH
Q 016572 334 VAGA 337 (387)
Q Consensus 334 l~g~ 337 (387)
+...
T Consensus 226 ~~~~ 229 (284)
T TIGR00751 226 VFML 229 (284)
T ss_pred HHHH
Confidence 5443
No 41
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-27 Score=227.26 Aligned_cols=267 Identities=14% Similarity=0.126 Sum_probs=186.1
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--C
Q 016572 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y 173 (387)
Q Consensus 96 ~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~ 173 (387)
.++++++|++++||+......++.+.|+++|..+ ..++.. ++++.+|..+..++++++|+++|+|+|++++| +
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 4578999999999999999999999999999752 223322 45688999999999999999999999999988 9
Q ss_pred CccccCccCHHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH-HHH
Q 016572 174 LPLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LIL 251 (387)
Q Consensus 174 RPl~sG~ls~~~al~~~~~l~~l~l~l~-~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g-~~~ 251 (387)
||+++|+++++|++.+++++.++|+.+. +..|+.+..+++...++-.++||.+ +||++. -|+++|...| .|+
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~-~NiviGg~aGa~Pp 162 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTP-QNIVIGGFAGAMPP 162 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCcc-cceeeeeccccccc
Confidence 9999999999999999999999999887 6778776666644445556799985 799995 4667776666 787
Q ss_pred HHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016572 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG 331 (387)
Q Consensus 252 ~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~ 331 (387)
.+||.+ +.|. .+.+... +++.+++|+-.--..-++.=+||-+++|++++|++-|++.+++... .+.+....
T Consensus 163 liGwaA-----vtg~-~~~~a~~--Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~-~y~~~l~~ 233 (304)
T COG0109 163 LIGWAA-----VTGS-ISLGAIL--LFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQIL-LYTLALAP 233 (304)
T ss_pred cceeee-----eeCC-CCchHHH--HHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHH-HHHHHHHH
Confidence 888654 3442 2333333 3333444432211111222233448999999999999998876532 33332221
Q ss_pred H-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHhHHHHHHHHHHhc
Q 016572 332 A-VVAGATSTLMISKLVTIIGHIILALMMWLRSRKV--DLDNFDSQFGFYMFLWQAS 385 (387)
Q Consensus 332 ~-~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--d~~~~~~~~~F~~~iw~lf 385 (387)
. ++... .+..++.|.+...++...+.+...+. +.|.+.+.+-|..|+-||+
T Consensus 234 ~sl~~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~ 287 (304)
T COG0109 234 VSLLLAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLA 287 (304)
T ss_pred HHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 1 22111 22334456655555555555555444 2345788999999998875
No 42
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=1.2e-26 Score=219.61 Aligned_cols=241 Identities=24% Similarity=0.271 Sum_probs=164.7
Q ss_pred HHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc--CCCCCccccCccCHHHHHHHHHH
Q 016572 115 IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTGIAICAG 192 (387)
Q Consensus 115 ~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~--n~~~RPl~sG~ls~~~al~~~~~ 192 (387)
++.+++.|...+... ..++.. ++...++.++.+.++|.+||+.|+|+|++ |+|+||+++|+++++++..++++
T Consensus 4 ~~~~~l~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~ 78 (257)
T PF01040_consen 4 SFLPVLAGLALASGG--PFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI 78 (257)
T ss_pred HHHHHHHHHHHHHcC--CCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence 445566664444332 233322 34456677799999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHHHHhhhHhhCCCCCChH
Q 016572 193 SALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTG 272 (387)
Q Consensus 193 l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~~~~~v~g~~~~~~~ 272 (387)
+.++++++++..++..+.+. +++.+.++.|| ||+|+||+++++++++++.++..+..+++. .++. .+.
T Consensus 79 ~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~ 146 (257)
T PF01040_consen 79 LLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD--PPP 146 (257)
T ss_pred HHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc--ccH
Confidence 99999999988887766665 45666779999 678899999889999998877555555442 2221 133
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 016572 273 PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGH 352 (387)
Q Consensus 273 ~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~~~~~~~~~~~~~~~~ 352 (387)
+.++...+..++.......+|++|+|+|++.|++|+|+++|++++... .+....+.. ........ .........
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~~--~~~~~~~~~-~~~~~~~~---~~~~~~~~~ 220 (257)
T PF01040_consen 147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARYL--LLTAGLLLF-LLLLLGLF---SPWPLIIAL 220 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHH---HHHHHHHHH
Confidence 333433444566777788889999999999999999999999988771 122222211 01111111 112333344
Q ss_pred HHHHHHHHHHHHHcCCCCHHhHHHHH
Q 016572 353 IILALMMWLRSRKVDLDNFDSQFGFY 378 (387)
Q Consensus 353 ~i~~~~l~~~~~~~d~~~~~~~~~F~ 378 (387)
...+..+.......+.++++.+++++
T Consensus 221 ~~~~~~l~~~~~~~~~~~~~~~~~~~ 246 (257)
T PF01040_consen 221 LLAALALIFILWFFRKRDPKKPERLF 246 (257)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44445555556666666655555555
No 43
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.95 E-value=4.8e-26 Score=220.09 Aligned_cols=225 Identities=12% Similarity=0.010 Sum_probs=168.1
Q ss_pred HHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCCccccCc
Q 016572 103 ISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLPLASGE 180 (387)
Q Consensus 103 y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~--~D~~n~~~RPl~sG~ 180 (387)
|++.+||+++..+++++++|.++|+...+++++.. ++++++++++.|.++|.+|||+|++ .|+.+. . ...++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~-~~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-H-SIVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-C-Cccccc
Confidence 67899999999999999999999975445677543 4567889999999999999999975 477422 1 122333
Q ss_pred cCHHHHHHHHHHHHHHHHHH----HHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHHHH
Q 016572 181 LSMGTGIAICAGSALLSLAL----AFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (387)
Q Consensus 181 ls~~~al~~~~~l~~l~l~l----~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~ 256 (387)
.+++++...+.++.++++++ .+..+++.+.++ +++++.++.||. ||+++|+++ +||+++++.+|.....+.+
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~ 152 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAAL 152 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHH
Confidence 45777777766666555543 334453333444 568889999999 999999999 6999999999955555543
Q ss_pred HHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016572 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336 (387)
Q Consensus 257 ~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g 336 (387)
. +..+ ++++..++..+...+.+.++.+.||++|+|+|+++|+||+|+++|+|++.++...++..+|+..+...
T Consensus 153 y-----vqt~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v 225 (285)
T TIGR02235 153 Y-----AQSQ--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAV 225 (285)
T ss_pred H-----HhCC--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3 2222 34445555556667788889999999999999999999999999999999999988888888766554
Q ss_pred HHhhhhh
Q 016572 337 ATSTLMI 343 (387)
Q Consensus 337 ~~~~~~~ 343 (387)
.....+|
T Consensus 226 ~~~~~p~ 232 (285)
T TIGR02235 226 IGGFLPW 232 (285)
T ss_pred HHhhhHH
Confidence 4333334
No 44
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=4.9e-26 Score=219.14 Aligned_cols=218 Identities=17% Similarity=0.176 Sum_probs=153.2
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHH-HHHHHHHHhhhhhcccccccccCCCCCcccc
Q 016572 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVA-QIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (387)
Q Consensus 100 l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~-~~l~~~a~~~iND~~D~~~D~~n~~~RPl~s 178 (387)
+|.+++++||.+|+.+.+++..|+++| ++.+ ++.+ ++..++ ....+.+.|.+|||+|+|.|+.|+|.+.. .
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~--~~~~----l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~ 72 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEI--DWLF----VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E 72 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHH-CCCC--ChHH----HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence 367899999999999999998899999 3322 2322 222222 33444555677999999999999874432 4
Q ss_pred CccCHHHHHHHHHHHHH-----HHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHH
Q 016572 179 GELSMGTGIAICAGSAL-----LSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI 253 (387)
Q Consensus 179 G~ls~~~al~~~~~l~~-----l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~ 253 (387)
|.++++++....+...+ +++.+....+++.+.++ .++++.++.||. ||.|+|++++.+++..++.+..+..+
T Consensus 73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~ 149 (282)
T PRK13105 73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALY 149 (282)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHH
Confidence 88999987444333332 22233333355444444 467888999999 99999999987776554433322334
Q ss_pred HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016572 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV 333 (387)
Q Consensus 254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~ 333 (387)
|.+. + ++. .+...++....+.+|+.+++.+||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.+
T Consensus 150 G~~~-----~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~ 221 (282)
T PRK13105 150 GLVL-----A-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML 221 (282)
T ss_pred HHHH-----h-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 4322 2 332 2334455556677889999999999999999999999999999999999999998888887766
Q ss_pred HHH
Q 016572 334 VAG 336 (387)
Q Consensus 334 l~g 336 (387)
..+
T Consensus 222 ~~~ 224 (282)
T PRK13105 222 ALP 224 (282)
T ss_pred HHH
Confidence 443
No 45
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=3e-26 Score=221.72 Aligned_cols=222 Identities=22% Similarity=0.278 Sum_probs=153.3
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccc
Q 016572 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA 177 (387)
Q Consensus 98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~ 177 (387)
+-+++++++.|+.+.+....++..+..... ..+. +. ....+++.++.+.++|++|||+|+|+|++|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~-~~----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGL-PI----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcC-hh----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 457899999999988877665544432110 0111 11 2345678889999999999999999999999999988
Q ss_pred cCccCHHHHHHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHHHhhhccCCCCcc-cccccCCchhHHHHHHHHH-HHHHH
Q 016572 178 SGELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPLPFL-RWKSHTFMAPFTLVILMGL-ILQIP 254 (387)
Q Consensus 178 sG~ls~~~al~~~~~l~~l~l~l-~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~-rlKr~~~~~~l~i~~~~g~-~~~~g 254 (387)
+++...+.+..+..+...+++.+ +...|+..+.++ +++.++++.||. ||. ++||.+.++|+++|..+|. +...+
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 54433333333333333344333 223366665555 456778999998 555 5899999999999999984 33333
Q ss_pred HHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016572 255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV 334 (387)
Q Consensus 255 ~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l 334 (387)
++. .+. .++...++...+.+++.+..+.++|++|+|+|+++|++|+|+++|+|+++++...+..+.++..+.
T Consensus 152 ~~~------~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~ 223 (285)
T PRK12872 152 VYY------YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLIL 223 (285)
T ss_pred HHh------ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHH
Confidence 332 111 123333444445556778889999999999999999999999999999999988888777766654
Q ss_pred HHH
Q 016572 335 AGA 337 (387)
Q Consensus 335 ~g~ 337 (387)
...
T Consensus 224 ~~~ 226 (285)
T PRK12872 224 GVY 226 (285)
T ss_pred HHH
Confidence 443
No 46
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.95 E-value=2e-25 Score=213.57 Aligned_cols=230 Identities=16% Similarity=0.101 Sum_probs=172.5
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccc----CC
Q 016572 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKI----NK 171 (387)
Q Consensus 98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~--~D~~----n~ 171 (387)
++.+.|++++|||++..++.|++.|.++|......+++ +.++++++++++++...|..|||+|.+ .|.. .+
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 45688999999999999999999999999655444554 336778999999999999999999974 5653 22
Q ss_pred CCCccccCccCHHHHHHHHHHHHHHHHHHH----HHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHH
Q 016572 172 PYLPLASGELSMGTGIAICAGSALLSLALA----FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM 247 (387)
Q Consensus 172 ~~RPl~sG~ls~~~al~~~~~l~~l~l~l~----~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~ 247 (387)
-++-+...+++++..+.+.+.+...+.+++ ...++.-+.++ +++.+.++.|+. +|+++++.+ +|++..++.+
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vff 158 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFF 158 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCC-HHHHHHHHHH
Confidence 355666777888887777665555444433 33454423344 578889999999 889999998 7999999999
Q ss_pred HHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016572 248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL 327 (387)
Q Consensus 248 g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l 327 (387)
|.....+.+. +. +..++...++..+...+.+..+...||+||+|+|+++|++|+|+++|++.++.+...++..
T Consensus 159 G~l~v~g~~y-----iq--t~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~ 231 (303)
T COG1575 159 GPLIVLGAYY-----IQ--TGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV 231 (303)
T ss_pred HHHHHHHHHH-----Hh--cccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence 9555555433 11 1223444555555666677778999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhhh
Q 016572 328 GYGGAVVAGATSTL 341 (387)
Q Consensus 328 ~~~~~~l~g~~~~~ 341 (387)
+|++.++.......
T Consensus 232 a~l~~~~~~i~~~~ 245 (303)
T COG1575 232 AYLAIVIFVILGLF 245 (303)
T ss_pred HHHHHHHHHHHHhc
Confidence 88776654444333
No 47
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=6.2e-25 Score=211.91 Aligned_cols=218 Identities=20% Similarity=0.253 Sum_probs=142.3
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHH--HHHHHHHhhhhhcccccccccCCCC
Q 016572 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQ--IFMNISLCSLNQICDVEIDKINKPY 173 (387)
Q Consensus 97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~~l~~--~l~~~a~~~iND~~D~~~D~~n~~~ 173 (387)
+.+++.|+++.||+++..+..++++|.++|....++ +++.. +++++. +..+.+.|++|||+|+|+|+.|+|+
T Consensus 5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk 79 (282)
T PRK12875 5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNPKK 79 (282)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence 467889999999999999999999999999654332 33321 112222 2344556779999999999999875
Q ss_pred Cc---cccCccCHHHHHHH-HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHH
Q 016572 174 LP---LASGELSMGTGIAI-CAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL 249 (387)
Q Consensus 174 RP---l~sG~ls~~~al~~-~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~ 249 (387)
+. ++ .+.+.+... .+....+++.+....++....+. +..+++.+.||. ||+|+|++++.+..+.++. ..
T Consensus 80 ~~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~-~~ 152 (282)
T PRK12875 80 DREREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLY-IL 152 (282)
T ss_pred cCCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHcC--CCccchhccHHHHHHHHHH-HH
Confidence 43 33 111222211 22233334444444444333232 346778899999 9999999997554433321 12
Q ss_pred HHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016572 250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY 329 (387)
Q Consensus 250 ~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~ 329 (387)
+...+++. ..| +.++..++ +...+|+.+++++||++|+|+|+++|+||+|+++|++++++++..++.++.
T Consensus 153 ~~~~~y~~-----~tg---~~~~~~l~--~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~ 222 (282)
T PRK12875 153 PGVAAYAL-----VSG---SLPPLLAV--AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAA 222 (282)
T ss_pred HHHHHHHH-----HcC---CCcHHHHH--HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHH
Confidence 22223222 122 23333322 334688999999999999999999999999999999999988887777776
Q ss_pred HHHHHHH
Q 016572 330 GGAVVAG 336 (387)
Q Consensus 330 ~~~~l~g 336 (387)
++.+..+
T Consensus 223 ~~~~~~~ 229 (282)
T PRK12875 223 AAFAAVD 229 (282)
T ss_pred HHHHHHH
Confidence 6666554
No 48
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=2.2e-24 Score=208.32 Aligned_cols=177 Identities=23% Similarity=0.216 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccC
Q 016572 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225 (387)
Q Consensus 146 l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~ 225 (387)
+.+.+...++|++|||+|+|+|++|+|+||.+ +++.+..++++..++|+.+++..|+. +++ +++.+.++.|+.
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~--ll~-ll~~l~g~lYS~ 137 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGML--LLA-FLPFITGYLYSK 137 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH--HHH-HHHHHHHHHhcC
Confidence 45567789999999999999999999999986 78889999999999999999988853 234 457778999997
Q ss_pred C----CCcccccccCCchhHHHHHHHHHHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Q 016572 226 P----LPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDK 301 (387)
Q Consensus 226 ~----lpP~rlKr~~~~~~l~i~~~~g~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~ 301 (387)
+ ..|+|+|+.+.+||+++++.||..+..+ . +. ..+ .+. ......++.....++++.+||++|+|+|+
T Consensus 138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~--~--g~-~~~---~~~-~~~~i~l~~~~~l~~~~iindirDiEGDr 208 (307)
T PRK13591 138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI--A--GS-YCG---SLI-PVGLIFLFFGVKLFINSCVYDFKDVKGDT 208 (307)
T ss_pred CCCCCCccccccCCCchhHHHHHHHHHHHHHHH--H--Hh-hhh---hHH-HHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 4 2245889999999999999998432211 1 00 011 010 11111111112235667899999999999
Q ss_pred HcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016572 302 AFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT 338 (387)
Q Consensus 302 ~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~~~l~g~~ 338 (387)
+.|++|+|+++|+++++++...+..++++..+.....
T Consensus 209 ~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~ 245 (307)
T PRK13591 209 LAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIF 245 (307)
T ss_pred HcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888766554443
No 49
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=1.9e-23 Score=200.14 Aligned_cols=177 Identities=16% Similarity=0.135 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh
Q 016572 141 VLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTG 220 (387)
Q Consensus 141 ~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~ 220 (387)
.+++++.+++..+++|++|||+|+|+|++|+|+||+|||++|+++|+.++.++.++++.+.... ... +...++.
T Consensus 48 ~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~-i~~~~i~ 121 (299)
T PRK13592 48 EFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN-VGWFLFL 121 (299)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHH
Confidence 4556677888899999999999999999999999999999999999999988877776665444 111 1233344
Q ss_pred hhc-----cCCCCcccccccCCchhHHHHHHHHHHHHHH--HHHH-hhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 016572 221 AAY-----SVPLPFLRWKSHTFMAPFTLVILMGLILQIP--YFIH-SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLK 292 (387)
Q Consensus 221 ~~Y-----s~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g--~~~~-~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~ 292 (387)
++| +. ++|+.++.||+.++...|.++..| ++.. .+....|.+. .....+++.+..++.++++|+.+
T Consensus 122 ~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~K 195 (299)
T PRK13592 122 YIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVCR 195 (299)
T ss_pred HHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 556 65 489999999999998888555333 2211 0001122111 11111232333445688899999
Q ss_pred hCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016572 293 DLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG 331 (387)
Q Consensus 293 d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~~~ 331 (387)
|++| |||++ |.+|+|+++|.|++.++..++..++.+.
T Consensus 196 dieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~ 232 (299)
T PRK13592 196 KIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILT 232 (299)
T ss_pred hhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHH
Confidence 9999 88886 5999999999999999887766665543
No 50
>PRK08238 hypothetical protein; Validated
Probab=99.89 E-value=3.9e-21 Score=197.91 Aligned_cols=189 Identities=24% Similarity=0.251 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCC
Q 016572 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPY 173 (387)
Q Consensus 96 ~~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n--~~~ 173 (387)
.+.++++|++++|||+|+++.+. +++.+++.. ..+ ...+...++++++..++++++|++||++|+|+|++| ||+
T Consensus 187 ~~~~~~~~~~l~Rp~q~~kn~l~-~~p~l~a~~-~~~--~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~ 262 (479)
T PRK08238 187 RPARLRTWLKALRVHQWAKNLLV-FVPLLAAHQ-FGD--LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR 262 (479)
T ss_pred CchHHHHHHHHhCCcHHHHHHHH-HHHHHHhcc-cCC--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence 45679999999999999999876 447766632 222 222233556778888999999999999999999999 569
Q ss_pred CccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHH
Q 016572 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI 253 (387)
Q Consensus 174 RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~ 253 (387)
||++||++|+++|+.++.+++++|+++++.+|+..++.. +..+++.++||. ++||+++++++++|+.++..+..
T Consensus 263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~ 336 (479)
T PRK08238 263 RPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVL-LAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIA 336 (479)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999998887544433 456777889997 48999999999998777655555
Q ss_pred HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCC
Q 016572 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGM 305 (387)
Q Consensus 254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~ 305 (387)
|+.+ .+ .+.+.|++ .+..++.....+.+...|.++++..|.
T Consensus 337 G~~a------~~----~~~s~wll-~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 337 GAAA------IG----VALSFWLL-AFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHH------hc----cCHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 5332 22 12233332 222234455678888888888877775
No 51
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=8e-21 Score=184.17 Aligned_cols=148 Identities=24% Similarity=0.230 Sum_probs=115.0
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCCC
Q 016572 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYL 174 (387)
Q Consensus 97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n--~~~R 174 (387)
.+++++|++++||++|+++.+.+. +.+++... .+.. .+...++++++.+++++++|++||++|+|+|++| ||+|
T Consensus 8 ~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~-~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R 83 (295)
T PRK12324 8 KNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNL-LNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR 83 (295)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhh-cccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence 357899999999999999987544 44455321 1111 1223455667778889999999999999999997 6699
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHHHHHHHH
Q 016572 175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP 254 (387)
Q Consensus 175 Pl~sG~ls~~~al~~~~~l~~l~l~l~~~l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g~~~~~g 254 (387)
|+++|++++++|+.++.++.++|+.+++.+|+....+. +..+++.++||. ++||++.++++++++.++..+..|
T Consensus 84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~G 157 (295)
T PRK12324 84 PIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIAG 157 (295)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888887665554 456777889997 589999999998887666444444
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.73 E-value=2.1e-18 Score=164.08 Aligned_cols=257 Identities=15% Similarity=0.137 Sum_probs=166.1
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCc
Q 016572 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP 175 (387)
Q Consensus 98 ~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~--~RP 175 (387)
+.++.|+||++|+--...+++...|+++|..+ +++. .++.+.+|..+..++.|.+||+++...|.+++| +||
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~---~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp 165 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFP---TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP 165 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccccC---CCcc---hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence 46789999999997777777777888888654 3322 245678999999999999999999999999988 999
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH-HHHHH
Q 016572 176 LASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQI 253 (387)
Q Consensus 176 l~sG~ls~~~al~~~~~l~~l~l~l~~~-l~~~~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g-~~~~~ 253 (387)
+++|++++.+|+.++.+..+.|+.+.++ .|+....++..=.++.+.+|+- +||.. +.|-.+|...| +++.+
T Consensus 166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrih-iinTWvGavVGAIPPLM 238 (409)
T KOG1380|consen 166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIH-IINTWVGAVVGAIPPLM 238 (409)
T ss_pred cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhh-hhhhHHHHHhccCCccc
Confidence 9999999999999999888888776544 7876655543212233456774 89876 34555665556 78888
Q ss_pred HHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHH--HHHHHHhCCChHHHHHcCCccchhhh---ccccHHHHHHHHHHHH
Q 016572 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAF--VNGLLKDLPDVEGDKAFGMQTLCVLL---GKEKVLPLCVNMMLLG 328 (387)
Q Consensus 254 g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~--~~~~i~d~~D~egD~~~G~~Tlpv~l---G~~~a~~l~~~l~~l~ 328 (387)
||.+.. |. ..+..+++...+..|.+ ...+..+++ +|-.++|.+.+++.= -.+.+++....++.++
T Consensus 239 GwAAas-----g~---l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~ 308 (409)
T KOG1380|consen 239 GWAAAS-----GL---LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS 308 (409)
T ss_pred hhhhhc-----cC---CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence 875432 21 12223333333334432 223333443 233899999998854 2334445444444444
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHhHHHHHHHHHHh
Q 016572 329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKV--DLDNFDSQFGFYMFLWQA 384 (387)
Q Consensus 329 ~~~~~l~g~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--d~~~~~~~~~F~~~iw~l 384 (387)
|.... .+...+.|.+-......++.+...+. |.|..++.+-||.++|+|
T Consensus 309 ~~~~~-------~~lT~~wf~i~s~~~na~l~~~afkFY~~~d~~~aRklF~aSLlhL 359 (409)
T KOG1380|consen 309 YAAPS-------TDLTTWWFAIESLPLNAYLAYLAFKFYRDRDYHNARKLFFASLLHL 359 (409)
T ss_pred ccccc-------cCcccceeeeccccHhHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 32211 11122233333333444444444433 667789999999999986
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.56 E-value=2.3e-15 Score=137.52 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=160.5
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccccCCCCC
Q 016572 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDKINKPYL 174 (387)
Q Consensus 97 ~~~l~~y~~L~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~--~~D~~n~~~R 174 (387)
..+.+.|+-..||+....+..++.+|.++|+......++. +..+.++.++++..+.++|.+|.|+|. .+|++...+|
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~-l~~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddr 136 (359)
T KOG4581|consen 58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFR-LATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDR 136 (359)
T ss_pred HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchh-HHHHHHHHhhheeeecccchhhhhhhhhhccccccccch
Confidence 3688999999999999999999999999997543222222 223455667778899999999999996 6899888899
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHHHH---HHhcHH---HHHHHHHHHHHHhhhccCCCCcccccccCCchhHHHHHHHH
Q 016572 175 PLASGELSMGTGIAICAGSALLSLALA---FLSGSP---AVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248 (387)
Q Consensus 175 Pl~sG~ls~~~al~~~~~l~~l~l~l~---~~l~~~---~l~l~~~~~~~l~~~Ys~~lpP~rlKr~~~~~~l~i~~~~g 248 (387)
.++...+.+.++..++.++...|...+ ..+++. .+.+....++--.++|+.+. .+|... +|.+++-+.+|
T Consensus 137 tlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggi---gfkyia-lgdliili~fg 212 (359)
T KOG4581|consen 137 TLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGI---GFKYIA-LGDLIILILFG 212 (359)
T ss_pred hHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEeccc---ceEEEe-ccCEEEEEeec
Confidence 999999999999999888877665443 333432 12222123455568999753 577766 56666666666
Q ss_pred -HHHHHHHHHHhhhHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016572 249 -LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL 327 (387)
Q Consensus 249 -~~~~~g~~~~~~~~v~g~~~~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l 327 (387)
..+.+.+.. ..+...+.+. -..+...+-+-++.+-|+.+|.|.||++|+-|+++.+|+..+..++..++.+
T Consensus 213 piavlfaf~~------q~g~l~~~~l--~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~ 284 (359)
T KOG4581|consen 213 PIAVLFAFAI------QTGHLAIFPL--GYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFA 284 (359)
T ss_pred hHHHHHHHHH------hcCceeEEee--hheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHH
Confidence 222222211 1122222111 1111223345567788999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHhh
Q 016572 328 GYGGAVVAGATST 340 (387)
Q Consensus 328 ~~~~~~l~g~~~~ 340 (387)
.|....+.+.-+.
T Consensus 285 py~lf~i~~~~~s 297 (359)
T KOG4581|consen 285 PYLLFFIFALHCS 297 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777665544
No 54
>PRK13591 ubiA prenyltransferase; Provisional
Probab=91.11 E-value=0.91 Score=44.65 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=37.0
Q ss_pred hhhhcccccccccCCC-CCccccCccCHHHHHHHHHHHHHHH---HHHHHHhc-----HHHHHHHHHHHHHHhhhccC
Q 016572 157 SLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALLS---LALAFLSG-----SPAVLCAVIAWGLTGAAYSV 225 (387)
Q Consensus 157 ~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l~~l~---l~l~~~l~-----~~~l~l~~~~~~~l~~~Ys~ 225 (387)
.+||+-|.|.|+.+.+ .-|+.=|+ +.+..+...+.+++ ++++..++ +...+.+++.+++..+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 6899999999999865 55665554 33333332222222 22222222 22233344566777788987
No 55
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=90.04 E-value=3.1 Score=40.81 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHH
Q 016572 143 KAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAI 189 (387)
Q Consensus 143 l~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~ 189 (387)
+..+......+..+..|++.|.|+|++|+|+-+.+ ++..+.+..+
T Consensus 180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l 224 (303)
T COG1575 180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL 224 (303)
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence 34455666777888899999999999998854433 3444444444
No 56
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=88.65 E-value=2.1 Score=42.27 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHHHHH
Q 016572 144 AVVAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALL 196 (387)
Q Consensus 144 ~~l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l~~l 196 (387)
..+...+..+.....||+-|+|.|+.+.+ .-|. ++.++.+..+..++.++
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~ 244 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYA 244 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHH
Confidence 34455566677788999999999999865 3343 34455555554444333
No 57
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=88.63 E-value=4.7 Score=39.65 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=26.0
Q ss_pred HHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHH
Q 016572 150 FMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICA 191 (387)
Q Consensus 150 l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~ 191 (387)
+........||+-|+|+|+.+.+ .-|. ++.++.+..+..
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~ 224 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLP 224 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHH
Confidence 45667778899999999999876 3343 334444444433
No 58
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=88.40 E-value=5.7 Score=38.21 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhhhcccccccccCCC-CCccccCc
Q 016572 146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGE 180 (387)
Q Consensus 146 l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ 180 (387)
+..++......++||+-|+|.|+.++. .-|..-|+
T Consensus 168 ~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 168 VFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 344455566678899999999998654 55655555
No 59
>PLN02922 prenyltransferase
Probab=87.43 E-value=2.7 Score=41.53 Aligned_cols=45 Identities=9% Similarity=0.015 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHH
Q 016572 146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGS 193 (387)
Q Consensus 146 l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l 193 (387)
+...+........||+-|+|.|+++++ .-|. ++.++.+..+...+
T Consensus 195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l 240 (315)
T PLN02922 195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRWA 240 (315)
T ss_pred HHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHHH
Confidence 333455567788899999999999876 3333 34445554444333
No 60
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=84.19 E-value=11 Score=36.61 Aligned_cols=45 Identities=13% Similarity=-0.026 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHHHHH
Q 016572 149 IFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALL 196 (387)
Q Consensus 149 ~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l~~l 196 (387)
.+...+....||+-|+|+|+.+.+ .-|. ++.++.+..+...+..+
T Consensus 171 gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~ 216 (285)
T TIGR02235 171 GLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISL 216 (285)
T ss_pred HHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHH
Confidence 355667788899999999998865 3333 34455555554444333
No 61
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=84.03 E-value=6.1 Score=38.48 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHHHHHHHHHHHHhc
Q 016572 146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALLSLALAFLSG 205 (387)
Q Consensus 146 l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l~~l~l~l~~~l~ 205 (387)
++..+...+...+||+-|.|.||.+.. .-|. ++.++.+..++.++.+++.++...++
T Consensus 167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677889999999999998754 3333 45567777777776666665544444
No 62
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=83.51 E-value=9.7 Score=36.57 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCChHHHHHcCCccchhhhcc
Q 016572 283 IYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 314 (387)
Q Consensus 283 l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~ 314 (387)
+...+-..+||+.|+|.|++. ++.=|..-|+
T Consensus 48 l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 48 FASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 334456789999999999988 6777777775
No 63
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=83.24 E-value=5.9 Score=38.37 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHHHH
Q 016572 145 VVAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSAL 195 (387)
Q Consensus 145 ~l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l~~ 195 (387)
.+...+........||+-|+|.|+.+.+ .-|.. +..+.+..+...+..
T Consensus 174 ~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~---lG~~~a~~~~~~l~~ 222 (293)
T PRK06080 174 ALPCGLLIGAVLLANNIRDIETDRENGKNTLAVR---LGDKNARRLHAALLA 222 (293)
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEee---ECcHhHHHHHHHHHH
Confidence 3444556667778899999999998754 44443 334444444433333
No 64
>PLN00012 chlorophyll synthetase; Provisional
Probab=82.63 E-value=6.7 Score=39.78 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhhcccccccccC-CCCCccccCc
Q 016572 148 QIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (387)
Q Consensus 148 ~~l~~~a~~~iND~~D~~~D~~n-~~~RPl~sG~ 180 (387)
.++...+....||+-|+|.|++. ++.-|+.-|+
T Consensus 261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 34556667789999999999876 4566766665
No 65
>PRK13592 ubiA prenyltransferase; Provisional
Probab=82.01 E-value=29 Score=34.14 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCChHHHHHcCCccchhhhcc
Q 016572 283 IYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 314 (387)
Q Consensus 283 l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~ 314 (387)
+.+.+-.++||+.|+|-|+. +++.=|+--|+
T Consensus 57 ~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~ 87 (299)
T PRK13592 57 GFWMILRIADDFKDYETDRR-LFPHRALPSGR 87 (299)
T ss_pred HHHHHhHHHHHHhhHHHhhh-cCCCCCCCcCC
Confidence 34555689999999999955 46666665554
No 66
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=81.74 E-value=16 Score=35.41 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCccccCc
Q 016572 144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (387)
Q Consensus 144 ~~l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~ 180 (387)
..++.++....-..+|++.|+|.|++.. |.-|+.-|+
T Consensus 165 l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 165 LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 3455566667777899999999999764 566776664
No 67
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=80.85 E-value=6.9 Score=38.58 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=22.8
Q ss_pred HHHHHHhhhhhcccccccccCC-CCCccccCc
Q 016572 150 FMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (387)
Q Consensus 150 l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~ 180 (387)
+...+....||+.|+|.|+... +.-|+.-|+
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 3455567899999999999874 466665554
No 68
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=80.02 E-value=8.1 Score=37.30 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=22.3
Q ss_pred HHHHHHhhhhhcccccccccCCC-CCccccCc
Q 016572 150 FMNISLCSLNQICDVEIDKINKP-YLPLASGE 180 (387)
Q Consensus 150 l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ 180 (387)
+...+....||+-|+|.|+++.+ .-|+.-|+
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 34555678999999999998754 55554454
No 69
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=79.97 E-value=8.2 Score=37.34 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCccccCc
Q 016572 144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (387)
Q Consensus 144 ~~l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~ 180 (387)
..+..++....-...|++.|+|.|+++. +.-|+.-|+
T Consensus 170 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 170 LYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 3445566666677889999999999775 355665554
No 70
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=79.40 E-value=8.8 Score=37.69 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhhcccccccccCCC-CCccccCc
Q 016572 149 IFMNISLCSLNQICDVEIDKINKP-YLPLASGE 180 (387)
Q Consensus 149 ~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ 180 (387)
.+...+....||+-|+|.|+++.+ .-|..-|+
T Consensus 193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~ 225 (306)
T TIGR02056 193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI 225 (306)
T ss_pred HHHHHHHHHHHHccChHHHHHcCCcCcchhcCh
Confidence 345666778999999999998754 55554443
No 71
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=78.91 E-value=14 Score=35.64 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCccccCc
Q 016572 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (387)
Q Consensus 145 ~l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~ 180 (387)
.+..++....-..+||..|+|.|++.. |.-|+.-|+
T Consensus 164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 344455566667899999999998765 466666663
No 72
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=78.18 E-value=11 Score=36.84 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCChHHHHHc
Q 016572 284 YAFVNGLLKDLPDVEGDKAF 303 (387)
Q Consensus 284 ~~~~~~~i~d~~D~egD~~~ 303 (387)
...+...+||+.|+|.|++.
T Consensus 58 ~~sa~y~iND~~D~e~Dr~~ 77 (295)
T PRK12324 58 ASSAVYLVNDIRDVEADRLH 77 (295)
T ss_pred HHHHHHHHHhHHHHHhhccC
Confidence 34456789999999999986
No 73
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=77.52 E-value=13 Score=36.12 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCccccCccCHHHHHHHHHHHHHHHHHH
Q 016572 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSLAL 200 (387)
Q Consensus 146 l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~ls~~~al~~~~~l~~l~l~l 200 (387)
++..+...+...+|++-|+|.|++.+ +.-|. ++..+.+..+..++.+++..+
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~ 224 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAA 224 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHH
Confidence 44456677778999999999999764 34444 344555555555554444443
No 74
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=76.82 E-value=40 Score=32.84 Aligned_cols=30 Identities=20% Similarity=0.094 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016572 285 AFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (387)
Q Consensus 285 ~~~~~~i~d~~D~egD~~~G~-~Tlpv~lG~ 314 (387)
..+-..+||+.|+|-|++..+ ++-|..-|+
T Consensus 58 ~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 58 RGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 444578999999999998765 466776675
No 75
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=76.57 E-value=15 Score=36.22 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCCC-CCcc
Q 016572 145 VVAQIFMNISLCSLNQICDVEIDKINKP-YLPL 176 (387)
Q Consensus 145 ~l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl 176 (387)
.+..++...+...+||+-|+|.|+++.. .-|+
T Consensus 188 ~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav 220 (308)
T PRK12887 188 TLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTL 220 (308)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHcCCcchhH
Confidence 3445566667788999999999998764 4444
No 76
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=76.46 E-value=12 Score=37.35 Aligned_cols=35 Identities=31% Similarity=0.320 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhcccccccccCCC-CCccccCc
Q 016572 146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGE 180 (387)
Q Consensus 146 l~~~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ 180 (387)
+..++...+...+||+-|+|.|+.... .-|+.=|+
T Consensus 187 ~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~ 222 (331)
T PRK12392 187 GLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA 222 (331)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence 344566677778899999999998754 55554443
No 77
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=75.71 E-value=20 Score=34.64 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016572 283 IYAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (387)
Q Consensus 283 l~~~~~~~i~d~~D~egD~~~G~-~Tlpv~lG~ 314 (387)
+...+...+||+.|+|-|++.-+ +.=|.--|+
T Consensus 58 ~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 58 LARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 34455678999999999999877 455555555
No 78
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=75.45 E-value=9.5 Score=37.43 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCccccC
Q 016572 144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASG 179 (387)
Q Consensus 144 ~~l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG 179 (387)
..++.++...+-.++|+..|+|.|++.. +.-|+.=|
T Consensus 182 l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 182 FVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 3445666677777999999999998664 45566555
No 79
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=74.99 E-value=14 Score=36.01 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHHHH
Q 016572 149 IFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSAL 195 (387)
Q Consensus 149 ~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l~~ 195 (387)
.+...+....||+-|+|.|+.+.+ .-|. ++-++.+..+...+..
T Consensus 174 g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~l~~ 218 (284)
T TIGR00751 174 GLLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQGLLA 218 (284)
T ss_pred HHHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHHHHH
Confidence 344566777899999999998865 3333 3445555554443333
No 80
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=74.92 E-value=16 Score=35.83 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCccccCc
Q 016572 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (387)
Q Consensus 145 ~l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~ 180 (387)
.+..++....-...||+.|+|.|+.+. +.-|+.-|+
T Consensus 181 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 181 MVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 344556677778999999999999865 466776665
No 81
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=74.78 E-value=38 Score=32.91 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCccccCc
Q 016572 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (387)
Q Consensus 145 ~l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~ 180 (387)
.+..++...+-..+|++.|+|.|++.. |.-|+.-|.
T Consensus 165 ~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 165 GLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 344556666778999999999998764 455655554
No 82
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=73.99 E-value=19 Score=33.49 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCChHHHHHc-CCccchhhhcc
Q 016572 283 IYAFVNGLLKDLPDVEGDKAF-GMQTLCVLLGK 314 (387)
Q Consensus 283 l~~~~~~~i~d~~D~egD~~~-G~~Tlpv~lG~ 314 (387)
+...+...+||+.|.|.|+.. +++.-|..-|+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~ 66 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGR 66 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHH
Confidence 345556789999999999996 34455554554
No 83
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=73.96 E-value=25 Score=33.82 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCChHHHHHcCCccchhhhcc
Q 016572 283 IYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 314 (387)
Q Consensus 283 l~~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~ 314 (387)
+...+-..+||+-|+|.|++.. ++=|..-|+
T Consensus 48 l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~ 78 (279)
T PRK09573 48 LVCAGGNVINDIYDIEIDKINK-PERPIPSGR 78 (279)
T ss_pred HHHHHHHHHHhhcccccccccC-CCCCcCCCc
Confidence 3444567899999999999764 455554443
No 84
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=71.05 E-value=56 Score=31.56 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCccccCc
Q 016572 144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (387)
Q Consensus 144 ~~l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~ 180 (387)
..+..++-...-...|.+.|+|.|++.+ |.-|+.-|.
T Consensus 167 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 167 LFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 3445555566666889999999999765 466666565
No 85
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=70.63 E-value=28 Score=33.43 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCChHHHHHcCCccchhhhcc
Q 016572 285 AFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 314 (387)
Q Consensus 285 ~~~~~~i~d~~D~egD~~~G~~Tlpv~lG~ 314 (387)
..+-..+||+-|+|-|+... +.=|..-|+
T Consensus 51 ~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~ 79 (276)
T PRK12882 51 TGAGNAINDYFDREIDRINR-PDRPIPSGA 79 (276)
T ss_pred HHHHHHHHHHhhhccccccC-CCCCcCCCC
Confidence 44457899999999999644 666666665
No 86
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=67.61 E-value=18 Score=35.32 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhhhcccccccccC-CCCCccccCc
Q 016572 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (387)
Q Consensus 146 l~~~l~~~a~~~iND~~D~~~D~~n-~~~RPl~sG~ 180 (387)
+..++-+.+-..+|++.|+|.|++. .|.-|+.-|+
T Consensus 169 ~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 169 LAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 3444445555578889999999865 4566776665
No 87
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=65.92 E-value=40 Score=32.34 Aligned_cols=28 Identities=21% Similarity=0.027 Sum_probs=21.0
Q ss_pred HHHHHHHhCCChHHHHHcCCccchhhhcc
Q 016572 286 FVNGLLKDLPDVEGDKAFGMQTLCVLLGK 314 (387)
Q Consensus 286 ~~~~~i~d~~D~egD~~~G~~Tlpv~lG~ 314 (387)
.+-..+||+-|+|.|+..+ ++=|..-|+
T Consensus 51 ~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 78 (277)
T PRK12883 51 SGGNTINDYFDYEIDKINR-PNRPLPRGA 78 (277)
T ss_pred HHHhHHHhhhhHhccccCC-CCCCCCCCc
Confidence 4567899999999999754 666666554
No 88
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=64.98 E-value=33 Score=33.42 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=23.6
Q ss_pred HHHHHHhhhhhcccccccccCCC-CCccccCccCHHHH
Q 016572 150 FMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTG 186 (387)
Q Consensus 150 l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~a 186 (387)
+........|++-|+|.|+.+.+ .-|. ++.++.+
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 34466778899999999998865 3333 4445555
No 89
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=64.16 E-value=32 Score=33.44 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCccccCcc
Q 016572 144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGEL 181 (387)
Q Consensus 144 ~~l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~l 181 (387)
..+..++...+-..+|++.|+|.|++.. +.-|+.-|+-
T Consensus 171 l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~ 209 (290)
T PRK12870 171 LWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRY 209 (290)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccc
Confidence 3455667777788999999999999765 3555555543
No 90
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=63.87 E-value=61 Score=33.14 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhhcccccc
Q 016572 149 IFMNISLCSLNQICDVEI 166 (387)
Q Consensus 149 ~l~~~a~~~iND~~D~~~ 166 (387)
.++..--.++|++++.++
T Consensus 115 ~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 115 ILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 445566678899987654
No 91
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=62.93 E-value=1.1e+02 Score=29.51 Aligned_cols=32 Identities=9% Similarity=-0.041 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016572 283 IYAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (387)
Q Consensus 283 l~~~~~~~i~d~~D~egD~~~G~-~Tlpv~lG~ 314 (387)
+...+-..+||+.|+|-|++..+ +.=|..-|+
T Consensus 47 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 79 (279)
T PRK12869 47 LASGGSAAFNHGIERDIDKVMSRTSKRPTPVGL 79 (279)
T ss_pred HHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCC
Confidence 33445689999999999998654 334444444
No 92
>PRK08238 hypothetical protein; Validated
Probab=60.85 E-value=40 Score=35.38 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016572 283 IYAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (387)
Q Consensus 283 l~~~~~~~i~d~~D~egD~~~G~-~Tlpv~lG~ 314 (387)
+...+..++||+-|+|.||+.-+ +.=|.--|+
T Consensus 237 l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~ 269 (479)
T PRK08238 237 LCASAVYILNDLLDLEADRAHPRKRRRPFASGA 269 (479)
T ss_pred HHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCC
Confidence 34455678999999999999743 334544443
No 93
>PRK13595 ubiA prenyltransferase; Provisional
Probab=60.42 E-value=1.8e+02 Score=28.60 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCChHHHHHcCCc
Q 016572 285 AFVNGLLKDLPDVEGDKAFGMQ 306 (387)
Q Consensus 285 ~~~~~~i~d~~D~egD~~~G~~ 306 (387)
......+||+-|+|.|+++-++
T Consensus 60 n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 60 NLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHHhhhhhhhhccCCCC
Confidence 3355789999999999866543
No 94
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=59.01 E-value=55 Score=32.05 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016572 284 YAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (387)
Q Consensus 284 ~~~~~~~i~d~~D~egD~~~G~-~Tlpv~lG~ 314 (387)
...+-..+||+.|+|-|++.-+ +.=|..-|+
T Consensus 56 ~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~ 87 (294)
T PRK12873 56 VSGAGCIANDLWDRRIDRKVERTKNRPLARGK 87 (294)
T ss_pred HHHHHHHHHHHHHHhhccCCCcCCCCCCCCCC
Confidence 3445578999999999998877 466665555
No 95
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=58.14 E-value=1.1e+02 Score=29.86 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCccccCc
Q 016572 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (387)
Q Consensus 145 ~l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~ 180 (387)
.+..++-+.+-..+|++.|+|.|++.. |.-|+.-|+
T Consensus 173 ~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 173 ALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 345566677777899999999998654 566665555
No 96
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=56.11 E-value=1.6e+02 Score=28.70 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCccccC
Q 016572 144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASG 179 (387)
Q Consensus 144 ~~l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG 179 (387)
..++.++-..+-.++.++.|+|.|++.. +.-|+.=|
T Consensus 164 l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 164 IFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence 3445566666667999999999999765 34444333
No 97
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=54.72 E-value=83 Score=30.23 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016572 284 YAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (387)
Q Consensus 284 ~~~~~~~i~d~~D~egD~~~G~-~Tlpv~lG~ 314 (387)
...+-..+||+-|+|-|++..+ +.=|..-|+
T Consensus 47 ~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~ 78 (280)
T TIGR01473 47 AAASANAFNMYIDRDIDKKMKRTRNRPLVTGR 78 (280)
T ss_pred HHHHHHHHHhhcccCcCCCCCCCCCCCCCCCC
Confidence 3445578999999999997543 333443443
No 98
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=53.04 E-value=1.8e+02 Score=28.64 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCccccCc
Q 016572 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (387)
Q Consensus 146 l~~~l~~~a~~~iND~~D~~~D~~n~-~~RPl~sG~ 180 (387)
+..++....-..++++.|+|.|++.. |.-|+.-|.
T Consensus 199 ~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 199 AGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 34455555666778999999998764 566665565
No 99
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=52.16 E-value=1.9e+02 Score=28.23 Aligned_cols=22 Identities=27% Similarity=0.063 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhhhhcccccc
Q 016572 145 VVAQIFMNISLCSLNQICDVEI 166 (387)
Q Consensus 145 ~l~~~l~~~a~~~iND~~D~~~ 166 (387)
+.+...+..--..+|+++|.+.
T Consensus 112 wtas~~~~al~~~lN~i~~~~~ 133 (303)
T COG1295 112 WTASNGMSALRDALNKIWRVKP 133 (303)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 3334444555567777777665
No 100
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=51.86 E-value=2.2e+02 Score=27.63 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016572 284 YAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (387)
Q Consensus 284 ~~~~~~~i~d~~D~egD~~~G~-~Tlpv~lG~ 314 (387)
...+-..+||+.|+|-|++..+ +.=|..-|+
T Consensus 56 ~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~ 87 (296)
T PRK04375 56 VAGAAGALNNYIDRDIDAKMERTKNRPLVTGR 87 (296)
T ss_pred HHHHHHHHHhHHhhccCCCCCccCCCCCCCCC
Confidence 3445578999999999998643 333433343
No 101
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=51.44 E-value=80 Score=31.04 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016572 283 IYAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (387)
Q Consensus 283 l~~~~~~~i~d~~D~egD~~~G~-~Tlpv~lG~ 314 (387)
+...+-..+||+.|+|-|++..+ +.=|..-|+
T Consensus 58 l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~ 90 (306)
T PRK13362 58 LVVASGCALNNCIDRDIDAKMQRTRNRVTVTGE 90 (306)
T ss_pred HHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCC
Confidence 33445678999999999997655 234444454
No 102
>PRK11383 hypothetical protein; Provisional
Probab=50.74 E-value=1.7e+02 Score=25.55 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=10.4
Q ss_pred HHHHHHhCCChHHH
Q 016572 287 VNGLLKDLPDVEGD 300 (387)
Q Consensus 287 ~~~~i~d~~D~egD 300 (387)
++.+-++.||...+
T Consensus 118 ai~vQKn~RD~~~~ 131 (145)
T PRK11383 118 AVAVQKNIRDAGIN 131 (145)
T ss_pred HHHHHhhhhhhhhc
Confidence 46788999998544
No 103
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=44.28 E-value=1.3e+02 Score=29.52 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=20.6
Q ss_pred HHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016572 287 VNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (387)
Q Consensus 287 ~~~~i~d~~D~egD~~~G~-~Tlpv~lG~ 314 (387)
+-..+||+-|+|-|++.-+ +.=|..-|+
T Consensus 62 ag~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 62 VGIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 3468999999999998875 444554454
No 104
>PRK01637 hypothetical protein; Reviewed
Probab=43.82 E-value=2.8e+02 Score=26.73 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhhhccccccc
Q 016572 147 AQIFMNISLCSLNQICDVEID 167 (387)
Q Consensus 147 ~~~l~~~a~~~iND~~D~~~D 167 (387)
+.-.+..-...+|++++.+++
T Consensus 105 a~~~~~~l~~a~N~i~~~~~~ 125 (286)
T PRK01637 105 ALMLISSIDKALNTIWRSKRK 125 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 344556667788999876554
No 105
>PLN02776 prenyltransferase
Probab=43.41 E-value=1.8e+02 Score=29.13 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016572 284 YAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (387)
Q Consensus 284 ~~~~~~~i~d~~D~egD~~~G~-~Tlpv~lG~ 314 (387)
...+-..+||+-|+|-|++..+ +.=|..-|+
T Consensus 41 ~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGr 72 (341)
T PLN02776 41 CAASANTLNQVFEVKNDSKMKRTMRRPLPSGR 72 (341)
T ss_pred HHHHHHHHHhHHhhhhcccCCCCCCCCCCCCC
Confidence 3444578999999999998765 344544444
No 106
>PLN02878 homogentisate phytyltransferase
Probab=41.27 E-value=83 Score=30.66 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhhcccccccccCCC-CCccccCccCHHHHHHHHHHH
Q 016572 149 IFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGS 193 (387)
Q Consensus 149 ~l~~~a~~~iND~~D~~~D~~n~~-~RPl~sG~ls~~~al~~~~~l 193 (387)
.+.......+||+-|.|-|++... .-|+.=| ++.+..++..+
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG---~~~~~~i~~~l 208 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLG---QKRVFWLCVNL 208 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCceechhhC---hHHHHHHHHHH
Confidence 344555669999999999998754 4555333 44444444333
No 107
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=35.87 E-value=4.3e+02 Score=25.91 Aligned_cols=50 Identities=12% Similarity=-0.034 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHH
Q 016572 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSL 198 (387)
Q Consensus 146 l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l 198 (387)
.+.=++|.+.-+.+|+.|-+.- +|.+|-+........|+..+=.++..++
T Consensus 70 ~aiEliH~asLiHDDI~D~s~~---RRg~pt~~~~~G~~~Ail~GD~L~~~a~ 119 (319)
T TIGR02748 70 VALELIHMASLVHDDVIDDADL---RRGRPTIKSKWGNRIAMYTGDYLFAKSL 119 (319)
T ss_pred HHHHHHHHHHHHhccccCCCCC---CCCCcCHHHHhChHHHHHHHHHHHHHHH
Confidence 3455889999999999776543 3456655555556666665544444443
No 108
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=32.42 E-value=70 Score=33.60 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHHH
Q 016572 142 LKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALA 201 (387)
Q Consensus 142 ll~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l~ 201 (387)
.+...+..++..+.-.-+|+++.-+|+....+++ .+.+++..++..+++..++
T Consensus 356 aLstaaGL~l~iasavsHDiY~~vik~~ase~~~-------v~vaRi~~v~~~vva~~lg 408 (529)
T COG4147 356 ALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKE-------VRVARIAVVILGVVAILLG 408 (529)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccce-------ehhHHHHHHHHHHHHHHhe
Confidence 3445566677777778899999877764222333 3334444555555555543
No 109
>COG4125 Predicted membrane protein [Function unknown]
Probab=32.30 E-value=2.6e+02 Score=24.34 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhhhhcccccccc
Q 016572 146 VAQIFMNISLCSLNQICDVEIDK 168 (387)
Q Consensus 146 l~~~l~~~a~~~iND~~D~~~D~ 168 (387)
+.+..+....++.|-.+|+-+-+
T Consensus 48 ~~atvAm~WN~vyN~lFd~~~rr 70 (149)
T COG4125 48 LSATVAMIWNFVYNLLFDRAERR 70 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666666665444
No 110
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=27.20 E-value=2e+02 Score=22.20 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=23.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Q 016572 313 GKEKVLPLCVNMMLLGYGGAVVAGATST-LMISKLVTIIGHIILAL 357 (387)
Q Consensus 313 G~~~a~~l~~~l~~l~~~~~~l~g~~~~-~~~~~~~~~~~~~i~~~ 357 (387)
|.|.+.++...++.++.+...+.|+... +......+++|.++.+.
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~l 50 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLL 50 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5565666655555555555566666544 22223344455544443
No 111
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=26.13 E-value=5.6e+02 Score=24.11 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHHHH
Q 016572 144 AVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAF 202 (387)
Q Consensus 144 ~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l~~ 202 (387)
...+.=++|.+..+.+|+.|-+. .+|.+|-.-.+.....|+..+-.++..++-...
T Consensus 38 ~a~avEliH~asLIhDDI~D~s~---~RRG~pt~~~~~G~~~Ail~gd~ll~~a~~~l~ 93 (260)
T PF00348_consen 38 LAAAVELIHAASLIHDDIIDNSD---LRRGKPTVHKKFGNAIAILAGDYLLALAFELLA 93 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCS---EETTEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcccc---cCCCCccccccccccchhhhchHHHHHHHHHHH
Confidence 44566789999999999977654 334555443444555566555555555544433
No 112
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=23.50 E-value=4.7e+02 Score=22.34 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=5.1
Q ss_pred HHHHhcHHHHH
Q 016572 200 LAFLSGSPAVL 210 (387)
Q Consensus 200 l~~~l~~~~l~ 210 (387)
+....++..++
T Consensus 54 ~~ll~~P~~l~ 64 (153)
T PF03208_consen 54 IFLLTNPFFLL 64 (153)
T ss_pred HHHHHHHHHHH
Confidence 34444654443
No 113
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=22.79 E-value=6.2e+02 Score=23.52 Aligned_cols=20 Identities=30% Similarity=0.255 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhhhcccc
Q 016572 145 VVAQIFMNISLCSLNQICDV 164 (387)
Q Consensus 145 ~l~~~l~~~a~~~iND~~D~ 164 (387)
+.+..+...-...+|+++|.
T Consensus 82 ~~a~~~~~~l~~a~~~i~~~ 101 (260)
T PF03631_consen 82 WSASSFFASLQRALNRIYGV 101 (260)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44555666777788999887
No 114
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=22.69 E-value=3.9e+02 Score=21.12 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC
Q 016572 133 VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN 170 (387)
Q Consensus 133 ~~~~~l~~~ll~~l~~~l~~~a~~~iND~~D~~~D~~n 170 (387)
+++.++.++....++..+...++..-|..+|...|++.
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 55555666666777777788888888999998877654
No 115
>PLN02890 geranyl diphosphate synthase
Probab=22.10 E-value=8.9e+02 Score=25.04 Aligned_cols=51 Identities=2% Similarity=-0.162 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHH
Q 016572 145 VVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSL 198 (387)
Q Consensus 145 ~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l 198 (387)
..++=++|.+.-+.+|+.|-+. .+|.+|-.........|+..+=.++..++
T Consensus 167 AaavEliH~ASLVHDDIiD~s~---~RRG~pt~~~~~G~~~AIlaGD~Lla~A~ 217 (422)
T PLN02890 167 AEITEMIHVASLLHDDVLDDAD---TRRGVGSLNVVMGNKLSVLAGDFLLSRAC 217 (422)
T ss_pred HHHHHHHHHHHHHHcccccCCC---CcCCCcChhhhcChHHHHHHHHHHHHHHH
Confidence 3455678999999999977653 45566666666667776665544444333
No 116
>PF03369 Herpes_UL3: Herpesvirus UL3 protein; InterPro: IPR005035 Herpes simplex viruses are large DNA viruses, the genome of which encode approximately 80 genes. The UL3 gene of Human herpesvirus 2 (HHV-2) is predicted to encode a 233 amino acid protein with a molecular mass of 26 kDa. Homologues of the UL3 protein are encoded only among alphaherpesviruses. The function of the UL3 protein of Herpes simplex viruses remains unknown but it is known to localize to the nucleus and is a phosphoprotein [].
Probab=22.07 E-value=1.5e+02 Score=25.24 Aligned_cols=30 Identities=30% Similarity=0.273 Sum_probs=22.0
Q ss_pred cccccccccccccccccccCCCCCcccc-ccccc
Q 016572 22 SRKFASPIVTQRHKSSIKCSSQSSFSFP-NQNKI 54 (387)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 54 (387)
|||..-+ +-+|.+|-|.--||||-+ ++++.
T Consensus 24 IRkdl~~---sl~~~~iACTKTssFs~~~~~~~~ 54 (134)
T PF03369_consen 24 IRKDLRM---SLAKFTIACTKTSSFSGASARRRK 54 (134)
T ss_pred HHHHHHH---HhhcCceEEecccccccccccccc
Confidence 4554333 568999999999999888 65554
No 117
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=21.48 E-value=81 Score=24.00 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccCC
Q 016572 143 KAVVAQIFMNISLCSLNQICDVEIDKINK 171 (387)
Q Consensus 143 l~~l~~~l~~~a~~~iND~~D~~~D~~n~ 171 (387)
+.+++.++.....+..|=||-+++||.+.
T Consensus 36 IGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 46677888888999999999999998653
No 118
>PRK10581 geranyltranstransferase; Provisional
Probab=20.17 E-value=1.1e+02 Score=29.84 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCChH-----------HHHHcCCccchhhhccccHHHHH
Q 016572 282 SIYAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVLPLC 321 (387)
Q Consensus 282 ~l~~~~~~~i~d~~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~ 321 (387)
.-+..++.+..|+.|+. .|.+.|+.|+|+.+|.+.+....
T Consensus 213 ~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a 263 (299)
T PRK10581 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_pred HHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHH
Confidence 34567788999999874 46778999999999988776653
Done!