Query 016572
Match_columns 387
No_of_seqs 290 out of 2031
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 28.3 36 0.0012 31.9 3.3 41 282-322 206-257 (297)
2 3lsn_A Geranyltranstransferase 24.2 32 0.0011 32.4 2.1 41 283-323 214-265 (304)
3 3ts7_A Geranyltranstransferase 23.4 23 0.00078 33.8 0.9 40 283-322 220-270 (324)
4 4f62_A Geranyltranstransferase 21.4 38 0.0013 32.1 2.0 40 283-322 213-263 (317)
5 3lom_A Geranyltranstransferase 20.9 33 0.0011 32.4 1.5 40 283-322 221-271 (313)
6 3p8l_A Geranyltranstransferase 20.3 39 0.0013 31.8 1.8 41 283-323 217-268 (302)
7 3p8r_A Geranyltranstransferase 20.1 38 0.0013 31.8 1.7 40 283-322 220-270 (302)
8 2h8o_A Geranyltranstransferase 18.0 36 0.0012 32.6 1.0 40 283-322 253-303 (335)
9 3uca_A Geranyltranstransferase 17.4 48 0.0017 31.5 1.7 40 283-322 242-292 (324)
10 3llw_A Geranyltranstransferase 17.0 46 0.0016 31.4 1.4 41 282-322 220-269 (311)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=28.34 E-value=36 Score=31.91 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCCChHH-----------HHHcCCccchhhhccccHHHHHH
Q 016572 282 SIYAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVLPLCV 322 (387)
Q Consensus 282 ~l~~~~~~~i~d~~D~eg-----------D~~~G~~Tlpv~lG~~~a~~l~~ 322 (387)
.-+..++.+..|+.|..+ |.+.|+.|+|+++|.+.+....-
T Consensus 206 ~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~ 257 (297)
T 3m0g_A 206 TALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAA 257 (297)
T ss_dssp HHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHH
Confidence 345667889999999865 66789999999999998877644
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=24.16 E-value=32 Score=32.39 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCChHH-----------HHHcCCccchhhhccccHHHHHHH
Q 016572 283 IYAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVLPLCVN 323 (387)
Q Consensus 283 l~~~~~~~i~d~~D~eg-----------D~~~G~~Tlpv~lG~~~a~~l~~~ 323 (387)
-+..++.+..|+.|..+ |.+.|+.|+|+++|.+.+....--
T Consensus 214 ~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~ 265 (304)
T 3lsn_A 214 AIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALE 265 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHH
Confidence 45667788888888765 667899999999999888766543
No 3
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=23.43 E-value=23 Score=33.79 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCChH-----------HHHHcCCccchhhhccccHHHHHH
Q 016572 283 IYAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVLPLCV 322 (387)
Q Consensus 283 l~~~~~~~i~d~~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~ 322 (387)
-...++.+..|+.|+. .|.+.|+.|+|+++|.+.+....-
T Consensus 220 ~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~ 270 (324)
T 3ts7_A 220 CIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAE 270 (324)
T ss_dssp HHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHH
Confidence 3455667777777664 477889999999999988876644
No 4
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=21.42 E-value=38 Score=32.12 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCChH-----------HHHHcCCccchhhhccccHHHHHH
Q 016572 283 IYAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVLPLCV 322 (387)
Q Consensus 283 l~~~~~~~i~d~~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~ 322 (387)
-+..++.+..|+.|+. .|.+.|+.|+|+++|.+.+....-
T Consensus 213 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~ 263 (317)
T 4f62_A 213 AIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVV 263 (317)
T ss_dssp HHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3456677777777764 467889999999999988877654
No 5
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=20.94 E-value=33 Score=32.42 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCChHH-----------HHHcCCccchhhhccccHHHHHH
Q 016572 283 IYAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVLPLCV 322 (387)
Q Consensus 283 l~~~~~~~i~d~~D~eg-----------D~~~G~~Tlpv~lG~~~a~~l~~ 322 (387)
-+..++.+..|+.|+.+ |.+.|+.|+|+++|.+.+....-
T Consensus 221 ~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~ 271 (313)
T 3lom_A 221 HIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIA 271 (313)
T ss_dssp HHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHH
Confidence 34566777777777654 67889999999999988876644
No 6
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=20.26 E-value=39 Score=31.75 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCh-----------HHHHHcCCccchhhhccccHHHHHHH
Q 016572 283 IYAFVNGLLKDLPDV-----------EGDKAFGMQTLCVLLGKEKVLPLCVN 323 (387)
Q Consensus 283 l~~~~~~~i~d~~D~-----------egD~~~G~~Tlpv~lG~~~a~~l~~~ 323 (387)
-+..++.+..|+.|. ..|.+.|+.|+|+++|.+.+....--
T Consensus 217 ~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~ 268 (302)
T 3p8l_A 217 HYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTH 268 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 345666777777776 35788899999999999988776543
No 7
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=20.05 E-value=38 Score=31.81 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCChH-----------HHHHcCCccchhhhccccHHHHHH
Q 016572 283 IYAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVLPLCV 322 (387)
Q Consensus 283 l~~~~~~~i~d~~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~ 322 (387)
-+..++.+..|+.|.. .|.+.|+.|+|+++|.+.+....-
T Consensus 220 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~ 270 (302)
T 3p8r_A 220 AVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAH 270 (302)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHH
Confidence 3455666777776654 477889999999999988876543
No 8
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=18.04 E-value=36 Score=32.56 Aligned_cols=40 Identities=28% Similarity=0.188 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCChH-----------HHHHcCCccchhhhccccHHHHHH
Q 016572 283 IYAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVLPLCV 322 (387)
Q Consensus 283 l~~~~~~~i~d~~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~ 322 (387)
-+.+++.+..|+.|+. .|.+.|+.|+|+.+|.+.+....-
T Consensus 253 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~ 303 (335)
T 2h8o_A 253 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQ 303 (335)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHH
Confidence 3456677777777764 467789999999999877766543
No 9
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=17.39 E-value=48 Score=31.50 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCh-----------HHHHHcCCccchhhhccccHHHHHH
Q 016572 283 IYAFVNGLLKDLPDV-----------EGDKAFGMQTLCVLLGKEKVLPLCV 322 (387)
Q Consensus 283 l~~~~~~~i~d~~D~-----------egD~~~G~~Tlpv~lG~~~a~~l~~ 322 (387)
-...++.+..|+.|+ ..|.+.|+.|+|+.+|.+.+....-
T Consensus 242 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~ 292 (324)
T 3uca_A 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCV 292 (324)
T ss_dssp HHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHH
Confidence 345566777777766 3578889999999999988876644
No 10
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=17.04 E-value=46 Score=31.45 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhCCChHHHH---------HcCCccchhhhccccHHHHHH
Q 016572 282 SIYAFVNGLLKDLPDVEGDK---------AFGMQTLCVLLGKEKVLPLCV 322 (387)
Q Consensus 282 ~l~~~~~~~i~d~~D~egD~---------~~G~~Tlpv~lG~~~a~~l~~ 322 (387)
.-+..++.+..|+.|..+|. +.|+.|+|+++|.+.+....-
T Consensus 220 ~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~ 269 (311)
T 3llw_A 220 LKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQ 269 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHH
Confidence 34566778888998887765 679999999999987766543
Done!