Query 016572
Match_columns 387
No_of_seqs 290 out of 2031
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 15:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016572.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016572hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 68.6 8.4 0.00061 33.7 8.7 55 145-200 67-121 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 19.3 1.3E+02 0.0095 25.4 7.6 44 286-329 78-122 (299)
3 d1rqja_ a.128.1.1 (A:) Farnesy 16.4 20 0.0015 31.1 1.1 56 144-200 69-124 (299)
4 d1rtra_ a.128.1.1 (A:) Farnesy 12.2 1.1E+02 0.0078 25.9 4.9 43 286-328 75-118 (290)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 10.3 3.4E+02 0.025 21.0 7.3 11 151-161 107-117 (199)
6 d2q80a1 a.128.1.1 (A:6-296) Ge 9.0 52 0.0038 28.1 1.4 53 145-200 45-97 (291)
7 d2dlqa1 g.37.1.1 (A:93-118) GL 8.8 49 0.0036 17.4 0.7 8 37-44 2-9 (26)
8 d1v4ea_ a.128.1.1 (A:) Octopre 8.5 2.2E+02 0.016 23.7 5.5 40 287-327 68-107 (280)
9 d2j01d2 b.40.4.5 (D:2-126) N-t 6.8 1.8E+02 0.013 21.7 3.4 9 12-21 4-12 (125)
10 d1gl0i_ g.4.1.1 (I:) Protease 6.5 63 0.0046 18.1 0.4 8 18-25 3-10 (32)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=68.63 E-value=8.4 Score=33.68 Aligned_cols=55 Identities=9% Similarity=-0.046 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHH
Q 016572 145 VVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLAL 200 (387)
Q Consensus 145 ~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l 200 (387)
..+.=++|.+.-+.+|+.|.|.|.. +|.+|-...+.....|...+-.+...++-+
T Consensus 67 A~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 67 AIALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 3456688999999999998877653 446666555666666666655555555444
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=19.27 E-value=1.3e+02 Score=25.45 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=32.8
Q ss_pred HHHHHHHhCCChHH-HHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016572 286 FVNGLLKDLPDVEG-DKAFGMQTLCVLLGKEKVLPLCVNMMLLGY 329 (387)
Q Consensus 286 ~~~~~i~d~~D~eg-D~~~G~~Tlpv~lG~~~a~~l~~~l~~l~~ 329 (387)
.+..+..|++|.+. |.+.|.+|.-..+|...+....-.++..++
T Consensus 78 ~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~ 122 (299)
T d1rqja_ 78 AYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122 (299)
T ss_dssp HHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHH
Confidence 34557789998876 589999999999999888666555444443
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=16.36 E-value=20 Score=31.12 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHH
Q 016572 144 AVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLAL 200 (387)
Q Consensus 144 ~~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l 200 (387)
...+.=++|.+.-+.+|+.|.|-|. .+|.+|-.-.+.....|...+-.+...++-+
T Consensus 69 ~A~aiEllH~asLiHDDI~d~d~~~-~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 69 PAAAVECIHAYSLIHDDLPAMDDDD-LRRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCC-EETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhhhhh-cccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 3456678999999999999887653 2334554444555666666555555444443
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=12.23 E-value=1.1e+02 Score=25.90 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=31.1
Q ss_pred HHHHHHHhCCChHHH-HHcCCccchhhhccccHHHHHHHHHHHH
Q 016572 286 FVNGLLKDLPDVEGD-KAFGMQTLCVLLGKEKVLPLCVNMMLLG 328 (387)
Q Consensus 286 ~~~~~i~d~~D~egD-~~~G~~Tlpv~lG~~~a~~l~~~l~~l~ 328 (387)
.+..+..|++|.++| .+.|++|.-..+|...+....-.++..+
T Consensus 75 ~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a 118 (290)
T d1rtra_ 75 TYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKA 118 (290)
T ss_dssp HHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHH
Confidence 345567889887664 6899999999999987765554444333
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.26 E-value=3.4e+02 Score=21.02 Aligned_cols=11 Identities=0% Similarity=0.287 Sum_probs=4.5
Q ss_pred HHHHHhhhhhc
Q 016572 151 MNISLCSLNQI 161 (387)
Q Consensus 151 ~~~a~~~iND~ 161 (387)
...+.+...++
T Consensus 107 vd~~i~i~~~~ 117 (199)
T d1iwga7 107 VDDAIVVVENV 117 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 33344444443
No 6
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.98 E-value=52 Score=28.15 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCCCCCccccCccCHHHHHHHHHHHHHHHHHH
Q 016572 145 VVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLAL 200 (387)
Q Consensus 145 ~l~~~l~~~a~~~iND~~D~~~D~~n~~~RPl~sG~ls~~~al~~~~~l~~l~l~l 200 (387)
..+.=++|.+.-+.+|+.|.+.=| |.+|-...+.....|...+-.++..++-.
T Consensus 45 a~aiEllH~asLihDDi~D~~~~R---Rg~pt~~~~~G~~~Ail~gd~l~~~a~~~ 97 (291)
T d2q80a1 45 IEVTEMLHNASLLIDDIEDNSKLR---RGFPVAHSIYGIPSVINSANYVYFLGLEK 97 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEE---TTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccc---cCCCccccccchhhhhhHHHHHHHHHHHh
Confidence 344567899999999998766544 34444444556666666665565555443
No 7
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.81 E-value=49 Score=17.44 Aligned_cols=8 Identities=63% Similarity=0.775 Sum_probs=5.3
Q ss_pred ccccCCCC
Q 016572 37 SIKCSSQS 44 (387)
Q Consensus 37 ~~~~~~~~ 44 (387)
|.|||+-|
T Consensus 2 pykcsscs 9 (26)
T d2dlqa1 2 PYKCSSCS 9 (26)
T ss_dssp SEECSSSC
T ss_pred CCcccHHH
Confidence 56777665
No 8
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=8.51 E-value=2.2e+02 Score=23.69 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=28.8
Q ss_pred HHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016572 287 VNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL 327 (387)
Q Consensus 287 ~~~~i~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~l 327 (387)
+..+..|+.| ++|.+.|.+|.=..+|...+....-.++..
T Consensus 68 asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~ 107 (280)
T d1v4ea_ 68 ASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVS 107 (280)
T ss_dssp HHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHh
Confidence 4455677777 567899999999999998776554444433
No 9
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]}
Probab=6.78 E-value=1.8e+02 Score=21.73 Aligned_cols=9 Identities=44% Similarity=0.903 Sum_probs=6.9
Q ss_pred CCCcCCCCCC
Q 016572 12 KFNPLQSPGC 21 (387)
Q Consensus 12 ~~~~~~~~~~ 21 (387)
+|+|.. |||
T Consensus 4 ~~kP~T-pg~ 12 (125)
T d2j01d2 4 KFKPYT-PSR 12 (125)
T ss_dssp CCCCSS-TTT
T ss_pred ccCCCC-CcC
Confidence 577765 998
No 10
>d1gl0i_ g.4.1.1 (I:) Protease inhibitor PMP-D2V {Migratory locust (Locusta migratoria) [TaxId: 7004]}
Probab=6.54 E-value=63 Score=18.07 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=5.7
Q ss_pred CCCCcccc
Q 016572 18 SPGCSRKF 25 (387)
Q Consensus 18 ~~~~~~~~ 25 (387)
+|||-||+
T Consensus 3 tpg~tkk~ 10 (32)
T d1gl0i_ 3 TPGQVKQQ 10 (32)
T ss_dssp CTTCEEEC
T ss_pred CCCccccc
Confidence 57887765
Done!