BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016573
         (387 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KLN|A Chain A, Vibrio Cholerae Vpst
 pdb|3KLN|B Chain B, Vibrio Cholerae Vpst
 pdb|3KLN|C Chain C, Vibrio Cholerae Vpst
 pdb|3KLN|D Chain D, Vibrio Cholerae Vpst
 pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp
          Length = 225

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 236 FAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQK 295
           F + D    L K      L DE+W   ++A++  LH +   + +VT + + ++  R+ Q 
Sbjct: 110 FYIDDDMDTLIKG-MSKILQDEMWLTRKLAQEYILHYRAGNS-VVTSQMYAKLTKREQQI 167

Query: 296 LRNILGSGMSN 306
           ++ +LGSG SN
Sbjct: 168 IK-LLGSGASN 177


>pdb|2HZP|A Chain A, Crystal Structure Of Homo Sapiens Kynureninase
          Length = 501

 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)

Query: 152 FNEEEDDNWTKEHFESHEVKEREGKRPILTGD 183
           + EEE D W K     HEV    GKRP +TGD
Sbjct: 122 YLEEELDKWAKIAAYGHEV----GKRPWITGD 149


>pdb|3E9K|A Chain A, Crystal Structure Of Homo Sapiens
           Kynureninase-3-Hydroxyhippuric Acid Inhibitor Complex
          Length = 465

 Score = 28.9 bits (63), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)

Query: 152 FNEEEDDNWTKEHFESHEVKEREGKRPILTGD 183
           + EEE D W K     HEV    GKRP +TGD
Sbjct: 86  YLEEELDKWAKIAAYGHEV----GKRPWITGD 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,684,271
Number of Sequences: 62578
Number of extensions: 550518
Number of successful extensions: 1166
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 5
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)