Query 016573
Match_columns 387
No_of_seqs 127 out of 146
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 93.1 0.025 8.4E-07 44.0 0.9 62 254-322 5-67 (70)
2 2kz3_A Putative uncharacterize 89.8 0.3 1E-05 39.3 4.0 40 271-315 17-56 (83)
3 2i1q_A DNA repair and recombin 80.4 0.67 2.3E-05 43.4 2.1 58 256-320 3-60 (322)
4 3lda_A DNA repair protein RAD5 77.1 1.7 5.8E-05 43.3 3.9 62 256-322 81-142 (400)
5 1b22_A DNA repair protein RAD5 74.5 0.68 2.3E-05 39.1 0.2 62 257-323 24-85 (114)
6 2z43_A DNA repair and recombin 72.3 0.79 2.7E-05 43.4 0.1 57 257-320 13-69 (324)
7 1pzn_A RAD51, DNA repair and r 70.2 2.4 8.3E-05 40.9 3.0 59 257-322 36-94 (349)
8 1v5w_A DMC1, meiotic recombina 68.1 1.2 4E-05 42.8 0.3 58 257-319 26-83 (343)
9 4dez_A POL IV 1, DNA polymeras 54.2 3.8 0.00013 39.5 1.1 40 258-302 180-219 (356)
10 3im1_A Protein SNU246, PRE-mRN 52.2 8.9 0.00031 36.6 3.3 54 257-317 158-211 (328)
11 3osn_A DNA polymerase IOTA; ho 49.8 3.7 0.00013 41.0 0.2 51 258-317 236-286 (420)
12 2aq4_A DNA repair protein REV1 48.3 7 0.00024 39.0 1.9 41 258-302 243-285 (434)
13 3pzp_A DNA polymerase kappa; D 46.4 14 0.00049 37.9 4.0 51 258-318 340-390 (517)
14 1t94_A Polymerase (DNA directe 44.8 12 0.0004 37.5 3.0 50 258-317 284-333 (459)
15 2q0z_X Protein Pro2281; SEC63, 44.5 20 0.0007 34.3 4.5 55 257-318 162-216 (339)
16 1z3e_B DNA-directed RNA polyme 35.2 24 0.00081 27.4 2.7 35 272-311 22-56 (73)
17 4f4y_A POL IV, DNA polymerase 35.1 5.3 0.00018 38.9 -1.3 48 261-317 184-231 (362)
18 3mab_A Uncharacterized protein 35.1 13 0.00044 30.2 1.2 74 260-372 8-81 (93)
19 3k4g_A DNA-directed RNA polyme 32.6 27 0.00091 28.2 2.7 38 272-314 25-62 (86)
20 1jx4_A DNA polymerase IV (fami 32.0 12 0.00039 36.0 0.5 53 258-319 180-232 (352)
21 3gqc_A DNA repair protein REV1 31.9 11 0.00036 39.0 0.3 40 258-302 317-356 (504)
22 3bqs_A Uncharacterized protein 31.2 16 0.00056 29.5 1.2 75 259-372 7-81 (93)
23 3bq0_A POL IV, DBH, DNA polyme 30.5 11 0.00037 36.3 0.0 54 258-320 181-234 (354)
24 1u9l_A Transcription elongatio 30.3 24 0.00083 27.1 2.0 50 267-321 15-64 (70)
25 2va8_A SSO2462, SKI2-type heli 25.7 38 0.0013 35.0 3.1 48 260-317 661-708 (715)
26 3gfk_B DNA-directed RNA polyme 23.3 25 0.00086 27.9 1.0 25 272-299 29-53 (79)
27 2f8v_T Telethonin; sarcomere, 23.2 19 0.00063 32.3 0.2 28 88-115 75-102 (167)
28 1tqz_A Necap1; endocytosis, st 21.6 29 0.00099 30.3 1.1 34 102-135 38-71 (133)
29 3euh_C MUKE, chromosome partit 21.6 1E+02 0.0034 29.2 4.7 74 272-345 107-186 (234)
30 4ecq_A DNA polymerase ETA; tra 20.4 28 0.00096 34.7 0.9 53 258-319 255-308 (435)
31 4aco_A Centromere DNA-binding 20.2 22 0.00074 39.4 0.0 42 33-74 721-769 (956)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=93.09 E-value=0.025 Score=43.95 Aligned_cols=62 Identities=24% Similarity=0.407 Sum_probs=50.8
Q ss_pred CCCcceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhcc-ccCC
Q 016573 254 LHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKT-CVLG 322 (387)
Q Consensus 254 L~DeVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAkt-Cvl~ 322 (387)
+.|++-.|++|+..-+ ++|.++||+||+|+.. .+++.|-.|. |+|...=+.++.-|+. |-+.
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~---~~~~eL~~i~--gise~kA~~ii~aAr~~~w~~ 67 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAE---QGIDDLADIE--GLTDEKAGALIMAARNICWFG 67 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHT---SCHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHc---CCHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence 4567778887776555 8999999999998754 4888898887 8999999999999998 7553
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=89.76 E-value=0.3 Score=39.27 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=31.1
Q ss_pred hhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHh
Q 016573 271 HKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEH 315 (387)
Q Consensus 271 hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~H 315 (387)
-++|.+++|.||+||+. .|+.+|.+++ |+|-+.=-.+..|
T Consensus 17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~--~ls~~~v~~l~r~ 56 (83)
T 2kz3_A 17 IQLLRSHRIKTVVDLVS---ADLEEVAQKC--GLSYKALVALRRV 56 (83)
T ss_dssp HHHHHHTTCCCHHHHTT---SCHHHHHHHH--TCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHH
Confidence 48999999999999975 7999999999 5665554444433
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.43 E-value=0.67 Score=43.42 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=42.3
Q ss_pred CcceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhcccc
Q 016573 256 DEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCV 320 (387)
Q Consensus 256 DeVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCv 320 (387)
+++..|++|+. ..-++|.++||+||+||+. .++..|-++. |+|.+.=+.+++.|+.+.
T Consensus 3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~---~~~~~L~~~~--gis~~~a~~~i~~a~~~~ 60 (322)
T 2i1q_A 3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIAT---ATVGELTDIE--GISEKAAAKMIMGARDLC 60 (322)
T ss_dssp --CTTSTTCCH--HHHHHHHHHTCCSHHHHHT---CCHHHHHTST--TCCHHHHHHHHHHHHHHT
T ss_pred ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CcCHHHHHHHHHHHHHhh
Confidence 45666775554 4569999999999999985 4577777775 678777777777777664
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.11 E-value=1.7 Score=43.27 Aligned_cols=62 Identities=21% Similarity=0.102 Sum_probs=50.0
Q ss_pred CcceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccCC
Q 016573 256 DEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLG 322 (387)
Q Consensus 256 DeVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~ 322 (387)
.++-+|+..|-.-..-++|.++||+||++|+. .++..|.++. |+|...=+.+++.|.+++..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~--gis~~~~~~i~~~a~~~~~~ 142 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIK--GISEAKADKLLNEAARLVPM 142 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 46778888655555669999999999999975 5888999987 78888888888888876543
No 5
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=74.54 E-value=0.68 Score=39.06 Aligned_cols=62 Identities=27% Similarity=0.263 Sum_probs=50.3
Q ss_pred cceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccCCC
Q 016573 257 EVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGG 323 (387)
Q Consensus 257 eVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~~ 323 (387)
+|.+|+..|-.-+.-++|.++|++||++. ...++..|.++- |+|...=+.+++=|+.++..+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~g 85 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPMG 85 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHcccC
Confidence 68889855444466699999999999976 456788999986 789999999999999887544
No 6
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=72.32 E-value=0.79 Score=43.39 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=0.0
Q ss_pred cceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhcccc
Q 016573 257 EVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCV 320 (387)
Q Consensus 257 eVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCv 320 (387)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|-++. |+|...=+.+++.|..+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 67888866654 4499999999999999854 455566665 566666666666666543
No 7
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.24 E-value=2.4 Score=40.89 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=45.2
Q ss_pred cceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccCC
Q 016573 257 EVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLG 322 (387)
Q Consensus 257 eVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~ 322 (387)
++.+|.+|+. ...++|.++||+||++++. .++..|-++. |+|...=+.+++.|.++...
T Consensus 36 ~l~~l~Gi~~--~~~~kL~~ag~~t~~~~~~---~~~~~L~~~~--~~s~~~~~~~l~~~~~~~~~ 94 (349)
T 1pzn_A 36 SIEDLPGVGP--ATAEKLREAGYDTLEAIAV---ASPIELKEVA--GISEGTALKIIQAARKAANL 94 (349)
T ss_dssp CSSCCTTCCH--HHHHHHHTTTCCSHHHHHT---CCHHHHHHHH--CCCHHHHHHHHHHHHHHCST
T ss_pred cHHHcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHhhc--CCCHHHHHHHHHHHhhhccc
Confidence 4666664544 5679999999999999875 5788888887 67877778888888776543
No 8
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.08 E-value=1.2 Score=42.80 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=0.0
Q ss_pred cceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccc
Q 016573 257 EVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTC 319 (387)
Q Consensus 257 eVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktC 319 (387)
++++|+.-|-.-..-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|..+
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--~is~~~~~~~~~~a~~~ 83 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMT---TRRALCNVK--GLSEAKVDKIKEAANKL 83 (343)
T ss_dssp ---------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CCCHHHHHHHHHHHHhh
Confidence 68889844444455699999999999999853 455565554 45555555555555544
No 9
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=54.21 E-value=3.8 Score=39.47 Aligned_cols=40 Identities=33% Similarity=0.366 Sum_probs=31.1
Q ss_pred ceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcC
Q 016573 258 VWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGS 302 (387)
Q Consensus 258 VwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~ 302 (387)
|-.|-+||+.-. ++|...||+|++|+. ..++..|++.||.
T Consensus 180 v~~l~GiG~~~~--~~L~~~GI~Ti~dL~---~~~~~~L~~~fG~ 219 (356)
T 4dez_A 180 PDALWGVGPKTT--KKLAAMGITTVADLA---VTDPSVLTTAFGP 219 (356)
T ss_dssp GGGSTTCCHHHH--HHHHHTTCCSHHHHH---TSCHHHHHHHHCH
T ss_pred HHHHcCCchhHH--HHHHHcCCCeecccc---cCCHHHHHHHhCC
Confidence 334446776544 899999999999986 5689999999974
No 10
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=52.22 E-value=8.9 Score=36.57 Aligned_cols=54 Identities=11% Similarity=0.192 Sum_probs=42.8
Q ss_pred cceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhc
Q 016573 257 EVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAK 317 (387)
Q Consensus 257 eVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk 317 (387)
...-|.+|+.+-+ ++|.++||.|++||.. .+++++.++| +++++.-+.+.+-|.
T Consensus 158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~---~~~~e~~~ll--~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 158 PLRQIPHFNNKIL--EKCKEINVETVYDIMA---LEDEERDEIL--TLTDSQLAQVAAFVN 211 (328)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHH---SCHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHH--HHHHhCCCCCHHHHhc---CCHHHHHhHh--CCCHHHHHHHHHHHH
Confidence 3556778877644 7799999999999865 5899999998 688888888777665
No 11
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=49.81 E-value=3.7 Score=41.02 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=36.9
Q ss_pred ceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhc
Q 016573 258 VWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAK 317 (387)
Q Consensus 258 VwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk 317 (387)
|-.|-+||+. .-++|...||+|++|+.+ .++..|++.||. +....+.+||.
T Consensus 236 v~~l~GIG~~--t~~~L~~lGI~TigdLa~---~~~~~L~~~fG~----~~g~~L~~~a~ 286 (420)
T 3osn_A 236 IKEIPGIGYK--TAKCLEALGINSVRDLQT---FSPKILEKELGI----SVAQRIQKLSF 286 (420)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHHH----HHHHHHHHHHT
T ss_pred HHHccCCCHH--HHHHHHHhCCCcHHHHhh---CCHHHHHHHhCc----hHHHHHHHHhc
Confidence 3333455554 558999999999999865 588999999974 24555667775
No 12
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=48.28 E-value=7 Score=38.98 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=32.1
Q ss_pred ceeeeeecccchhhhhhhh--CCCccHHHHHHHHhcChHHHHHHHcC
Q 016573 258 VWRLDRIAKDGALHKKLMK--ADIVTVEDFLRILVRDPQKLRNILGS 302 (387)
Q Consensus 258 VwRLekIgKdG~~hkrL~~--~gI~tV~dFL~l~~~d~~kLR~iLg~ 302 (387)
|-.|-+||+ ..-++|.. .||+|++|+.++. ++..|++.||.
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~ 285 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGS 285 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCS
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCH
Confidence 444445564 45589999 8999999999874 78999999974
No 13
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=46.42 E-value=14 Score=37.92 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=38.0
Q ss_pred ceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhcc
Q 016573 258 VWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKT 318 (387)
Q Consensus 258 VwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAkt 318 (387)
|-+|-+||+.+. ++|...||+|++|+..+ +..|+..|| ...|..+.++|.-
T Consensus 340 V~kl~GIG~~t~--~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 340 IRKVSGIGKVTE--KMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp GGGSTTCCHHHH--HHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred hhhhccccHHHH--HHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 445557777555 89999999999999885 456888774 4568777777653
No 14
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=44.79 E-value=12 Score=37.53 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=36.7
Q ss_pred ceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhc
Q 016573 258 VWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAK 317 (387)
Q Consensus 258 VwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk 317 (387)
|-+|-+||+.+ .++|...||+|++|+.++ +..|++.|| .+.|..+.++|+
T Consensus 284 v~~l~GiG~~~--~~~L~~lGI~T~gdL~~~----~~~L~~~fG----~~~~~~l~~~a~ 333 (459)
T 1t94_A 284 IRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISL 333 (459)
T ss_dssp GGGCTTSCHHH--HHHHHHTTCCBHHHHHHT----HHHHHHHSC----HHHHHHHHHHHT
T ss_pred HHhcCCcCHHH--HHHHHHcCCCcHHHHHhh----HHHHHHHhC----hHhHHHHHHHHc
Confidence 55666677654 489999999999998874 356999885 344666667776
No 15
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=44.48 E-value=20 Score=34.29 Aligned_cols=55 Identities=9% Similarity=0.189 Sum_probs=42.6
Q ss_pred cceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhcc
Q 016573 257 EVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKT 318 (387)
Q Consensus 257 eVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAkt 318 (387)
...-|.+|+.+- -++|.++||.|++||.. .+++++..+| |+++..-+.+.+-+..
T Consensus 162 pL~Qlp~i~~~~--~~~l~~~~i~s~~~l~~---~~~~e~~~ll--~l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSEH--IKRCTDKGVESVFDIME---MEDEERNALL--QLTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHHH--HHHHHHTTCCSHHHHHH---SCHHHHHHHH--CCCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHHH--HHHHHhcCCCCHHHHHh---CCHHHHHHHH--CCCHHHHHHHHHHHHh
Confidence 456777887753 47899999999999875 7899999999 4888776777665543
No 16
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=35.24 E-value=24 Score=27.43 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=23.6
Q ss_pred hhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHH
Q 016573 272 KKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWEN 311 (387)
Q Consensus 272 krL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~ 311 (387)
.-|..+||+||+|+++ ..++.|.++= |+-.+.-+.
T Consensus 22 NcLkragI~Tv~dL~~---~s~~dLlki~--n~G~kSl~E 56 (73)
T 1z3e_B 22 NCLKRAGINTVQELAN---KTEEDMMKVR--NLGRKSLEE 56 (73)
T ss_dssp HHHHHTTCCBHHHHHT---SCHHHHHTST--TCCHHHHHH
T ss_pred HHHHHcCCCcHHHHHc---CCHHHHHHcC--CCCHHHHHH
Confidence 5788999999999876 4566666663 333444333
No 17
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=35.12 E-value=5.3 Score=38.94 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=34.7
Q ss_pred eeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhc
Q 016573 261 LDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAK 317 (387)
Q Consensus 261 LekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk 317 (387)
|-+||+. .-++|...||+|++|+. ..++..|++.||. +....+..+|+
T Consensus 184 l~GiG~~--~~~~L~~~GI~Ti~dL~---~~~~~~L~~~fG~----~~g~~l~~~a~ 231 (362)
T 4f4y_A 184 IPGIGSV--LARRLNELGIQKLRDIL---SKNYNELEKITGK----AKALYLLKLAQ 231 (362)
T ss_dssp STTCCST--THHHHHHTTCCBGGGGT---TSCHHHHHHHHCH----HHHHHHHHHHT
T ss_pred ccCCCHH--HHHHHHHcCCChHHHHh---cCCHHHHHHHhCh----HHHHHHHHHhc
Confidence 3356665 44899999999999976 4688999999973 34445555554
No 18
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=35.11 E-value=13 Score=30.23 Aligned_cols=74 Identities=23% Similarity=0.327 Sum_probs=49.4
Q ss_pred eeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccCCCeeEEEEecCCCcEEEE
Q 016573 260 RLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVV 339 (387)
Q Consensus 260 RLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~~k~~~y~~~~~~nv~l~ 339 (387)
.|-+||+.-. +.|.+.||+||+||..+ | +.+.|..+.++- . + +-
T Consensus 8 dLPNig~~~e--~~L~~~GI~t~~~Lr~~------------G---a~~ay~rLk~~~------~-----------~--~~ 51 (93)
T 3mab_A 8 ELPNIGKVLE--QDLIKAGIKTPVELKDV------------G---SKEAFLRIWEND------S-----------S--VC 51 (93)
T ss_dssp GSTTCCHHHH--HHHHHTTCCSHHHHHHH------------C---HHHHHHHHHHHC------T-----------T--CC
T ss_pred hCCCCCHHHH--HHHHHcCCCCHHHHHhC------------C---HHHHHHHHHHhC------C-----------C--CC
Confidence 3455666443 88999999999987652 2 245555554321 0 1 22
Q ss_pred EcccceeeeeeeCCeEeecCCCChhhhhhhhhh
Q 016573 340 FNNIYELRGLIDDGQFVSLESLTHSQKTLPDSG 372 (387)
Q Consensus 340 FN~i~~lvG~~~~g~y~~~~~L~~~qk~~V~~L 372 (387)
+|..|.|+||+-| +....|++.+|.....+
T Consensus 52 ~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3mab_A 52 MSELYALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp HHHHHHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcHHHCCHHHHHHHHHH
Confidence 6788999999987 67778888888766554
No 19
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=32.55 E-value=27 Score=28.17 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=25.1
Q ss_pred hhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHH
Q 016573 272 KKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVE 314 (387)
Q Consensus 272 krL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~ 314 (387)
.-|..+||+||+|++.. +++.|.++= |+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence 57999999999998764 555555552 344555554443
No 20
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=31.96 E-value=12 Score=36.02 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=38.8
Q ss_pred ceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccc
Q 016573 258 VWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTC 319 (387)
Q Consensus 258 VwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktC 319 (387)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||.--
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~ 232 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDE 232 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCC
Confidence 555556665 4558999999999999864 688999999964 2255566777643
No 21
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=31.95 E-value=11 Score=38.98 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=31.0
Q ss_pred ceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcC
Q 016573 258 VWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGS 302 (387)
Q Consensus 258 VwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~ 302 (387)
|-.|-+||+. .-++|...||+|++|+. ..++..|++.||.
T Consensus 317 V~~l~GIG~~--t~~kL~~lGI~TigDLa---~~~~~~L~~~fG~ 356 (504)
T 3gqc_A 317 VTNLPGVGHS--MESKLASLGIKTCGDLQ---YMTMAKLQKEFGP 356 (504)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCBHHHHT---TSCHHHHHHHHCH
T ss_pred hhHhhCcCHH--HHHHHHHcCCCcHHHHH---hccHHHHHHhhCh
Confidence 4444456654 44899999999999986 4688999999974
No 22
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=31.24 E-value=16 Score=29.55 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=48.1
Q ss_pred eeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccCCCeeEEEEecCCCcEEE
Q 016573 259 WRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGV 338 (387)
Q Consensus 259 wRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~~k~~~y~~~~~~nv~l 338 (387)
-.|-+||+.- -+.|.+.||+||+||..+ ++ .++|..+... +. . +
T Consensus 7 ~~LPNiG~~~--e~~L~~vGI~s~e~L~~~---Ga------------~~ay~rL~~~------~~-----------~--~ 50 (93)
T 3bqs_A 7 SELPNIGKVL--EQDLIKAGIKTPVELKDV---GS------------KEAFLRIWEN------DS-----------S--V 50 (93)
T ss_dssp GGSTTCCHHH--HHHHHHTTCCSHHHHHHH---HH------------HHHHHHHHTT------CT-----------T--C
T ss_pred hcCCCCCHHH--HHHHHHcCCCCHHHHHhC---CH------------HHHHHHHHHH------CC-----------C--C
Confidence 3445566643 388999999999998653 12 3445444432 11 1 2
Q ss_pred EEcccceeeeeeeCCeEeecCCCChhhhhhhhhh
Q 016573 339 VFNNIYELRGLIDDGQFVSLESLTHSQKTLPDSG 372 (387)
Q Consensus 339 ~FN~i~~lvG~~~~g~y~~~~~L~~~qk~~V~~L 372 (387)
.+|.+|.|.||+-| ++...|++..|......
T Consensus 51 c~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3bqs_A 51 CMSELYALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp CHHHHHHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC---CCHHHCCHHHHHHHHHH
Confidence 23677888899876 67778888887766554
No 23
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=30.47 E-value=11 Score=36.26 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=39.0
Q ss_pred ceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhcccc
Q 016573 258 VWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCV 320 (387)
Q Consensus 258 VwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCv 320 (387)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 234 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQNKY 234 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHCH----HHHHHHHHHhCCCC
Confidence 344445665 4568999999999999875 688999999964 22566777776433
No 24
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=30.27 E-value=24 Score=27.09 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=40.0
Q ss_pred cchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccC
Q 016573 267 DGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVL 321 (387)
Q Consensus 267 dG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl 321 (387)
+-..-++|..+|++||++. .+.+++.|-.|- |+|...=+.+.+-|+..+.
T Consensus 15 ~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 15 DEDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALA 64 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHH
Confidence 3456689999999999964 556778777775 8899999999999887654
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=25.66 E-value=38 Score=35.01 Aligned_cols=48 Identities=23% Similarity=0.490 Sum_probs=36.4
Q ss_pred eeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhc
Q 016573 260 RLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAK 317 (387)
Q Consensus 260 RLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk 317 (387)
+|.+|+.. ..++|.++||.|++|+. .|+.+|.+++| .+.-+.+++-|+
T Consensus 661 qlp~i~~~--rar~L~~~g~~s~~~l~----~~~~~l~~~l~----~~~~~~i~~~~~ 708 (715)
T 2va8_A 661 QISGVGRK--RARLLYNNGIKELGDVV----MNPDKVKNLLG----QKLGEKVVQEAA 708 (715)
T ss_dssp TSTTCCHH--HHHHHHHTTCCSHHHHH----HCHHHHHHHHC----HHHHHHHHHHHH
T ss_pred hCCCCCHH--HHHHHHHcCCCCHHHHh----CCHHHHHHHhC----hhHHHHHHHHHH
Confidence 44455543 44789999999999965 68999999995 777777777554
No 26
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=23.35 E-value=25 Score=27.87 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=19.0
Q ss_pred hhhhhCCCccHHHHHHHHhcChHHHHHH
Q 016573 272 KKLMKADIVTVEDFLRILVRDPQKLRNI 299 (387)
Q Consensus 272 krL~~~gI~tV~dFL~l~~~d~~kLR~i 299 (387)
.-|..+||+||+|++. ++++.|.++
T Consensus 29 NcLk~agI~Tv~dL~~---~se~dLlki 53 (79)
T 3gfk_B 29 NCLKRAGINTVQELAN---KTEEDMMKV 53 (79)
T ss_dssp HHHHHTTCCBHHHHTT---CCHHHHTTS
T ss_pred HHHHHhCCCCHHHHHh---CCHHHHHHc
Confidence 6899999999999876 455555554
No 27
>2f8v_T Telethonin; sarcomere, titin, Z1Z2, contractIle protein-CONT protein complex; 2.75A {Homo sapiens}
Probab=23.15 E-value=19 Score=32.34 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=11.2
Q ss_pred CCCCCceEEEecCCCCCCcccCCccccC
Q 016573 88 GPGEKNLQLHYKTRMPPHLFTGGKVEGD 115 (387)
Q Consensus 88 ~~~~~~~~L~F~n~l~~pifT~~kI~a~ 115 (387)
+.+-+-|||=|.|-|++||||-.++.+.
T Consensus 75 g~~lqEYqLPY~~~LPlPIFtPak~~~~ 102 (167)
T 2f8v_T 75 GRGLQEYQLPYQRVLPLPIFTPAKMGAT 102 (167)
T ss_dssp TSCCEEEESSCCCC--------------
T ss_pred cccchhhccchhccCCccccchhhcCCc
Confidence 3445689999999999999999988743
No 28
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=21.57 E-value=29 Score=30.25 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=27.3
Q ss_pred CCCCcccCCccccCCCCceEEEEEeCCCCCeecc
Q 016573 102 MPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQT 135 (387)
Q Consensus 102 l~~pifT~~kI~a~~g~~I~V~L~D~~t~~~V~~ 135 (387)
+..|+|||.--.-+.|....|.|.|.+||+.-..
T Consensus 38 ~~~~~wtGrlrv~~~g~~~~I~LeD~~tGeLFA~ 71 (133)
T 1tqz_A 38 LDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQ 71 (133)
T ss_dssp CSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEE
T ss_pred CCCceeEEEEEEEEeCCEEEEEEEeCCCCcEEEe
Confidence 5678999986666788889999999999876443
No 29
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=21.57 E-value=1e+02 Score=29.20 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=50.8
Q ss_pred hhhhhCCCccHHHHHHHHh--cChHHHHHHHcC--CCChhhHHHHHHhhccccC--CCeeEEEEecCCCcEEEEEcccce
Q 016573 272 KKLMKADIVTVEDFLRILV--RDPQKLRNILGS--GMSNRMWENTVEHAKTCVL--GGKLYVYYADGTQNTGVVFNNIYE 345 (387)
Q Consensus 272 krL~~~gI~tV~dFL~l~~--~d~~kLR~iLg~--gms~k~We~~v~HAktCvl--~~k~~~y~~~~~~nv~l~FN~i~~ 345 (387)
++|++.||.|+++...-+. .|+++|.++++. +=|+..-+++-+-.++|-- ..--.++...+..+..-+=.+||-
T Consensus 107 erLa~~gift~qeL~eeL~sl~dE~kLlkl~~~R~~GSDlD~~kl~ekv~~sLrrL~RlgmI~~~~~d~~kf~iteavfR 186 (234)
T 3euh_C 107 ERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLNRLRRLGMVWFMGHDSSKFRITESVFR 186 (234)
T ss_dssp GGGGGTTEEEHHHHHHHHHHHSCHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHTTSEEECSSSSSEEEECGGGGG
T ss_pred HHHhcCCcccHHHHHHHHHHhhCHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHhcCcEEEecCCCCeEEecHHHHh
Confidence 7899999999999887663 589999999952 2377788888888888853 222335543323444445555554
No 30
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=20.36 E-value=28 Score=34.69 Aligned_cols=53 Identities=8% Similarity=0.105 Sum_probs=34.6
Q ss_pred ceeeeeecccchhhhh-hhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccc
Q 016573 258 VWRLDRIAKDGALHKK-LMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTC 319 (387)
Q Consensus 258 VwRLekIgKdG~~hkr-L~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktC 319 (387)
|-.|-+||+. .-++ |...||+|++|+.. .++..|++.||. +.-..+.+||+--
T Consensus 255 v~~l~GiG~~--~~~~lL~~lGI~TigdLa~---~~~~~L~~~fG~----~~g~~L~~~a~G~ 308 (435)
T 4ecq_A 255 IRKIRSLGGK--LGASVIEILGIEYMGELTQ---FTESQLQSHFGE----KNGSWLYAMCRGI 308 (435)
T ss_dssp GGGSTTCSSH--HHHHHHHHHTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHTTTC
T ss_pred HHHhcCCCHH--HHHHHHHHcCCCcHHHHhh---CCHHHHHHHhCc----cHHHHHHHHhhCC
Confidence 3344456543 2234 89999999999764 588999999972 3334445666543
No 31
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=20.22 E-value=22 Score=39.44 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=0.0
Q ss_pred hHHHHHHHHH-------HhHHHHHHHhhhhHHHHHhHHHHHHHHHhccc
Q 016573 33 LASVIVEALK-------MDSLQRLCSSLEPLLRRIVSEEVERALTKFGH 74 (387)
Q Consensus 33 ~~svi~e~~~-------~~~~q~~~~~lEp~lrrvV~EEve~~l~~~~~ 74 (387)
|..+|.|.|. .+.|+++...++-+|..+|.|+|.+.+..+..
T Consensus 721 Lk~mVneLV~~kv~s~~k~qm~qfe~K~~~~i~~~Veekv~~~i~~~~~ 769 (956)
T 4aco_A 721 LKSMINELINSKISTFLRDQMDQFELKINALLDKILEEKVTRIIEQKLG 769 (956)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677776665 45578888899999999999999999988653
Done!