Query 016575
Match_columns 387
No_of_seqs 155 out of 1221
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0192 MetK S-adenosylmethion 100.0 2E-182 4E-187 1329.3 35.3 368 7-382 2-381 (388)
2 PLN02243 S-adenosylmethionine 100.0 6E-180 1E-184 1326.0 39.2 371 7-380 1-386 (386)
3 PTZ00104 S-adenosylmethionine 100.0 6E-179 1E-183 1322.5 38.9 375 7-386 8-397 (398)
4 PRK05250 S-adenosylmethionine 100.0 3E-178 6E-183 1314.4 37.8 364 9-382 2-377 (384)
5 PRK12459 S-adenosylmethionine 100.0 5E-178 1E-182 1313.4 37.0 365 7-382 1-379 (386)
6 TIGR01034 metK S-adenosylmethi 100.0 1E-177 3E-182 1306.1 36.4 360 11-382 1-372 (377)
7 KOG1506 S-adenosylmethionine s 100.0 2E-171 5E-176 1224.0 32.1 370 6-382 2-383 (383)
8 PF02773 S-AdoMet_synt_C: S-ad 100.0 1.7E-76 3.6E-81 518.9 6.5 126 246-376 1-138 (138)
9 PF02772 S-AdoMet_synt_M: S-ad 100.0 2.3E-56 5E-61 385.7 11.9 119 123-244 2-120 (120)
10 PF00438 S-AdoMet_synt_N: S-ad 100.0 3.5E-49 7.7E-54 331.7 7.2 100 8-107 1-100 (100)
11 PRK04439 S-adenosylmethionine 98.8 3.2E-07 6.9E-12 93.7 18.5 279 16-322 24-352 (399)
12 PF01941 AdoMet_Synthase: S-ad 98.7 1E-06 2.3E-11 89.9 19.1 281 16-322 24-352 (396)
13 COG1812 MetK Archaeal S-adenos 97.8 0.00043 9.4E-09 70.4 14.7 282 15-319 23-348 (400)
14 PRK11023 outer membrane lipopr 50.9 26 0.00056 32.7 4.6 57 23-83 121-178 (191)
15 PRK11198 LysM domain/BON super 48.1 32 0.0007 30.8 4.7 52 9-66 12-63 (147)
16 TIGR00590 pcna proliferating c 46.7 1.1E+02 0.0023 29.8 8.4 35 287-325 204-238 (259)
17 PF02980 FokI_C: Restriction e 46.5 20 0.00044 32.8 3.1 37 284-320 77-113 (142)
18 PF14084 DUF4264: Protein of u 45.2 6.1 0.00013 30.6 -0.4 39 104-148 11-49 (52)
19 COG2441 Predicted butyrate kin 38.6 26 0.00057 35.9 2.8 50 261-325 185-242 (374)
20 PF04208 MtrA: Tetrahydrometha 33.8 49 0.0011 31.4 3.6 41 40-81 18-65 (176)
21 PF00352 TBP: Transcription fa 31.3 55 0.0012 26.5 3.1 57 192-249 4-65 (86)
22 cd01269 PLX Pollux (PLX) Phosp 30.8 1.5E+02 0.0032 27.0 5.9 82 57-141 6-94 (129)
23 KOG3447 Mitochondrial/chloropl 30.7 18 0.00039 33.1 0.2 12 255-266 95-106 (150)
24 KOG0671 LAMMER dual specificit 29.9 2.4 5.1E-05 44.5 -6.2 76 255-338 87-163 (415)
25 TIGR02889 spore_YpeB germinati 29.3 2.7E+02 0.0059 29.7 8.6 97 44-147 262-371 (435)
26 PRK11023 outer membrane lipopr 26.0 1E+02 0.0022 28.7 4.4 42 24-66 44-88 (191)
27 PRK04964 hypothetical protein; 26.0 56 0.0012 26.4 2.2 31 122-167 13-43 (66)
28 PF02171 Piwi: Piwi domain; I 25.5 55 0.0012 31.6 2.5 22 140-161 279-300 (302)
29 PRK10568 periplasmic protein; 24.7 1.3E+02 0.0027 28.4 4.7 53 29-84 61-113 (203)
30 PF06786 UPF0253: Uncharacteri 24.3 64 0.0014 26.1 2.3 32 122-168 13-44 (66)
31 PRK14053 methyltransferase; Pr 23.8 98 0.0021 29.8 3.8 42 39-81 17-62 (194)
32 PRK00964 tetrahydromethanopter 22.4 93 0.002 30.6 3.4 41 40-81 21-69 (225)
33 COG4669 EscJ Type III secretor 22.3 1.1E+02 0.0023 30.6 3.8 94 137-241 97-190 (246)
34 TIGR03315 Se_ygfK putative sel 21.7 49 0.0011 38.7 1.6 18 141-158 325-342 (1012)
35 PF03769 Attacin_C: Attacin, C 21.3 1.7E+02 0.0036 26.2 4.5 55 195-281 56-110 (122)
36 COG2101 SPT15 TATA-box binding 21.0 1.2E+02 0.0026 29.0 3.8 55 192-246 8-66 (185)
37 cd04517 TLF TBP-like factors ( 20.6 1.5E+02 0.0032 27.6 4.2 57 192-248 3-62 (174)
38 COG5309 Exo-beta-1,3-glucanase 20.5 83 0.0018 32.1 2.7 85 22-114 110-194 (305)
39 PRK00394 transcription factor; 20.5 1.6E+02 0.0034 27.6 4.4 82 192-306 1-86 (179)
40 KOG1406 Peroxisomal 3-ketoacyl 20.1 58 0.0013 33.4 1.6 21 235-255 334-355 (408)
No 1
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=100.00 E-value=2.1e-182 Score=1329.29 Aligned_cols=368 Identities=60% Similarity=0.983 Sum_probs=357.9
Q ss_pred ccceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 016575 7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS 86 (387)
Q Consensus 7 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 86 (387)
.+.+|||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++++|++|++|||++
T Consensus 2 ~~~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~ 81 (388)
T COG0192 2 KKYFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTE 81 (388)
T ss_pred CccceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 016575 87 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNST 166 (387)
Q Consensus 87 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~ 166 (387)
+++|||++||.|+++|++|||||+|||++.. +..+++|||||||||||||||||+||||||+|||+|++||+++||+|+
T Consensus 82 ~~~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~-~~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~ 160 (388)
T COG0192 82 SDYGFDAKTCAVLVAIGEQSPDIAQGVDEAD-EELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGE 160 (388)
T ss_pred cccCcCccceEEEeecccCChhHHHhhhhcc-cchhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999743 245689999999999999999999999999999999999999999999
Q ss_pred CCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEE
Q 016575 167 CSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246 (387)
Q Consensus 167 ~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~Fvi 246 (387)
+||||||+||||||+|++ ++ +|++|++||+|+||++++++++||+.++|+||+|++|+++++++|+|+|||||||||
T Consensus 161 l~~LrpD~KsQVtv~Y~~-~~--~p~~idtIvvStQH~~~i~~~~l~~~v~e~iI~pv~~~~~l~~~tk~~INPtGrFVi 237 (388)
T COG0192 161 LPWLRPDAKSQVTVEYED-NG--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVI 237 (388)
T ss_pred CcccCCCcceeEEEEEcC-CC--CceeEEEEEEEeccCcccCHHHHHHHHHHHHHhhhccHhhcCcCceEEECCCCCeee
Confidence 999999999999999986 35 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH-
Q 016575 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF- 325 (387)
Q Consensus 247 GGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~- 325 (387)
|||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+|+|+||+
T Consensus 238 GGP~gD~GLTGRKIIVDTYGG~a~HGGGAFSGKDptKVDRSaAYaARyvAKNiVAAglA~~ceVQlsYAIGva~PvSi~V 317 (388)
T COG0192 238 GGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISV 317 (388)
T ss_pred CCCCccccCccceEEEEcCCCccCCCCccCCCCCCcccchHHHHHHHHHHHHHHHhhhhhheEEEEEeEecccCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -----------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCc
Q 016575 326 -----------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 382 (387)
Q Consensus 326 -----------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~ 382 (387)
+|.++|+++|||||++||+.|+|++| ||++||+||||||++ +|||||+|+++.
T Consensus 318 dtfgT~kvse~~i~~~v~~~FdlrP~gIi~~LdL~~p---iY~~tAaYGHFGr~~-~~pWEk~dkv~~ 381 (388)
T COG0192 318 DTFGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLRP---IYRKTAAYGHFGRED-DFPWEKLDKVDE 381 (388)
T ss_pred EccCCcccCHHHHHHHHHHhcCCCHHHHHHHhccCCc---cchhcccccccCCCC-CCCccchhhHHH
Confidence 89999999999999999999999999 999999999999987 899999999864
No 2
>PLN02243 S-adenosylmethionine synthase
Probab=100.00 E-value=5.5e-180 Score=1325.98 Aligned_cols=371 Identities=94% Similarity=1.458 Sum_probs=357.3
Q ss_pred ccceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 016575 7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS 86 (387)
Q Consensus 7 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 86 (387)
|.+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||++
T Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (386)
T PLN02243 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCREIGFVS 80 (386)
T ss_pred CCceEEEecCCCCCCChHHHHHHHHHHHHHHHhhCCCCcEEEEEEEECCEEEEEEEECCCCcCCHHHHHHHHHHHhCCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 016575 87 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNST 166 (387)
Q Consensus 87 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~ 166 (387)
+++|||+++|.|++.|++|||||+|||+.+.+...+++|||||||||||||||||+||||||+|||+|+++|+++||+|.
T Consensus 81 ~~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~iGAGDQGimfGYA~~ET~e~MPlpi~lAh~l~~~l~~~Rk~~~ 160 (386)
T PLN02243 81 DDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGT 160 (386)
T ss_pred cccCcCCCceEEEecCCCCChhHhhccccccccccccCCCCcceEEeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999985422222458999999999999999999999999999999999999999999
Q ss_pred CCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEE
Q 016575 167 CSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246 (387)
Q Consensus 167 ~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~Fvi 246 (387)
+|||||||||||||+|+++.+.++|+||++||+|+||++++++++|+++|+|+||+|++|+++++++|+||||||||||+
T Consensus 161 ~~~l~PD~KsQVtv~Y~~~~~~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrFvi 240 (386)
T PLN02243 161 CPWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240 (386)
T ss_pred CCeecCCCceEEEEEeecCCCCccceeEeEEEEeeccCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEe
Confidence 99999999999999997543544599999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH-
Q 016575 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF- 325 (387)
Q Consensus 247 GGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~- 325 (387)
|||.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+
T Consensus 241 GGP~~D~GLTGRKIiVDTYGG~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~rceVQlsYAIGva~Pvsi~V 320 (386)
T PLN02243 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFV 320 (386)
T ss_pred CCCcccccccCceEEEEcCCCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCeeEEEEEEEcccCcCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHhcCCChhhhhhhcccCC---CccccccccccccCCCCCCCCCCccccccC
Q 016575 326 -----------EILKIVKESFDFRPGMMTINLDLKR---GGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 380 (387)
Q Consensus 326 -----------~i~~~i~~~Fdl~p~~Ii~~L~L~~---p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~ 380 (387)
+|.++|+++|||||++||++|+|++ | ||++||+||||||++++|||||+|++
T Consensus 321 ~TfGT~~~~d~~i~~~v~~~Fdlrp~~Ii~~L~L~~~~~p---iY~~ta~yGHFGr~~~~fpWE~~d~~ 386 (386)
T PLN02243 321 DTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNG---RFQKTAAYGHFGRDDPDFTWEVVKPL 386 (386)
T ss_pred ecCCCCcCCHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCC---cchhccccCCCCCCCCCCCccccCCC
Confidence 8999999999999999999999999 8 99999999999999889999999986
No 3
>PTZ00104 S-adenosylmethionine synthase; Provisional
Probab=100.00 E-value=6.1e-179 Score=1322.47 Aligned_cols=375 Identities=73% Similarity=1.160 Sum_probs=360.4
Q ss_pred ccceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 016575 7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS 86 (387)
Q Consensus 7 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 86 (387)
+++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||+++|||++|++|||++
T Consensus 8 ~~~~lfTSESVseGHPDKicDqISDaILD~~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vDi~~ivR~~i~~IGY~~ 87 (398)
T PTZ00104 8 VGHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTKAVVDYQKVVRDTVKEIGYDD 87 (398)
T ss_pred cCCEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeCCEEEEEEEEcCCccCCHHHHHHHHHHHhCCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 016575 87 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNST 166 (387)
Q Consensus 87 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~ 166 (387)
+++|||+++|.|++.|++|||||+|||+.. ...+++|||||||||||||||||+||||||+|||+|++||+++||+|.
T Consensus 88 ~~~gfd~~t~~v~~~i~~QSpDIa~gV~~~--~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~L~~~l~~~Rk~~~ 165 (398)
T PTZ00104 88 TEKGLDYKTCNVLVAIEQQSPDIAQGVHVG--KKEEDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKNGI 165 (398)
T ss_pred cccCcCCCceEEEecCCCCChhHhhccccc--cccccCCCCccceeeeeecCCCcccCCcHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999842 112458999999999999999999999999999999999999999999
Q ss_pred CCcccCCcceeEEEEEecCC-CceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeE
Q 016575 167 CSWLRPDGKTQVTVEYYNDN-GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFV 245 (387)
Q Consensus 167 ~~~l~pD~KtQVtv~Y~~~~-g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~Fv 245 (387)
+|||||||||||||+|+++. +.++|+||++||+|+||++++++++|+++|+++||+|++|.+|++++|+||||||||||
T Consensus 166 ~~~L~PD~KsQVtv~Y~~~~~~~~~P~~i~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrFv 245 (398)
T PTZ00104 166 LPWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQHDEGVSNEEIREDLMEHVIKPVIPAKLLDEETKYHLNPSGRFV 245 (398)
T ss_pred CCeeccCCceEEEEEeccCCCCCccceeEEEEEEccccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeE
Confidence 99999999999999996531 11589999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH
Q 016575 246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF 325 (387)
Q Consensus 246 iGGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~ 325 (387)
+|||.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+|+||||+
T Consensus 246 iGGP~gDtGLTGRKIiVDTYGG~a~HGGGAFSGKDptKVDRSaAY~ARyiAKniVAAGlA~~ceVQlsYAIGva~Pvsi~ 325 (398)
T PTZ00104 246 IGGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVAAGLCKRCLVQVSYAIGVAEPLSIH 325 (398)
T ss_pred eCCCcccccccCceEEEEcCCCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhccccceEEEEEEEcccCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCcCCCC
Q 016575 326 --------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 386 (387)
Q Consensus 326 --------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~~~~~ 386 (387)
+|.++|+++|||||++||++|+|++| +|++||+||||||++++||||++|++++++.-
T Consensus 326 V~TfGT~~~~~~~~~i~~~v~~~Fdl~P~~II~~L~L~~P---iY~~ta~yGHFGr~~~~f~WE~~d~~~~~~~~ 397 (398)
T PTZ00104 326 VNTYGTGKKGYDDEDLLEIVQKNFDLRPGDIIKELDLRRP---IFQKTASYGHFGRSDPEFTWEVPKDLEHEKDV 397 (398)
T ss_pred EecCCCcccCCCHHHHHHHHHHHcCCCHHHHHHHhCCCCh---hhhhhhccCccCCCCCCCCccccchhcccccC
Confidence 78999999999999999999999999 99999999999999888999999999999864
No 4
>PRK05250 S-adenosylmethionine synthetase; Validated
Probab=100.00 E-value=2.8e-178 Score=1314.37 Aligned_cols=364 Identities=62% Similarity=0.997 Sum_probs=355.0
Q ss_pred ceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 016575 9 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 88 (387)
Q Consensus 9 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 88 (387)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||++++
T Consensus 2 ~~lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~a~vD~~~ivR~~i~~IGY~~~~ 81 (384)
T PRK05250 2 RYLFTSESVSEGHPDKIADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYVDIEEIVRETIKEIGYTSSE 81 (384)
T ss_pred CceEeecCCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEeCCccCCHHHHHHHHHHHcCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 016575 89 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 168 (387)
Q Consensus 89 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~~ 168 (387)
+|||+++|.|+++|++|||||+|||+.. ..+++|||||||||||||||||+|||||++|||+|+++|+++||+|.+|
T Consensus 82 ~gfd~~~~~v~~~i~~QSpdIa~gV~~~---~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~~~~~ 158 (384)
T PRK05250 82 YGFDANTCAVLVSIGEQSPDIAQGVDRD---ELDEIGAGDQGIMFGYACNETPELMPLPITLAHRLVRRLAEVRKSGTLP 158 (384)
T ss_pred cCcCCCceEEEeecCCCChhHHhhhCcc---ccccCCCCCceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999852 2356899999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 016575 169 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 248 (387)
Q Consensus 169 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG 248 (387)
||||||||||||+|++ | +|+||++||||+||++++++++++++|+|+||+|++|++|++++|+||||||||||+||
T Consensus 159 ~l~PD~KtQVtv~Y~~--~--~p~~i~tiviS~QH~~~~~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 234 (384)
T PRK05250 159 YLRPDAKSQVTVEYEN--G--KPVRIDTIVVSTQHDPDVSQEQLREDVIEEVIKPVLPAELLDEDTKFLINPTGRFVIGG 234 (384)
T ss_pred eecCCCceEEEEEEEC--C--ceeeEEEEEEeccCCCCCCHHHHHHHHHHHHhHHhcccccCCCCeEEEECCCCCeEeCC
Confidence 9999999999999974 5 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH---
Q 016575 249 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF--- 325 (387)
Q Consensus 249 P~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~--- 325 (387)
|.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+
T Consensus 235 P~gDtGLTGRKIiVDTYGG~a~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~~ceVQlsYAIGva~Pvsi~Vdt 314 (384)
T PRK05250 235 PQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSIYVDT 314 (384)
T ss_pred CcccccccCceEEEEcCCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCceEEEEEEeeccccCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCc
Q 016575 326 ---------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 382 (387)
Q Consensus 326 ---------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~ 382 (387)
+|.++|+++|||||++||++|+|++| +|++||+||||||++++|||||+|+++.
T Consensus 315 fGt~~~~~~~i~~~v~~~Fdl~P~~Ii~~L~L~~p---iY~~ta~yGHFGr~~~~fpWE~~d~v~~ 377 (384)
T PRK05250 315 FGTGKVSDEKIEEAVREVFDLRPAGIIKMLDLRRP---IYRKTAAYGHFGREDLDFPWEKTDKVEA 377 (384)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCHHHHHHHhCCCCc---cchhhcccCCCCCCCCCCCCcccchHHH
Confidence 89999999999999999999999999 9999999999999988899999998763
No 5
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=100.00 E-value=4.8e-178 Score=1313.40 Aligned_cols=365 Identities=59% Similarity=0.955 Sum_probs=351.6
Q ss_pred ccceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 016575 7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS 86 (387)
Q Consensus 7 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 86 (387)
|++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+
T Consensus 1 m~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vdi~~ivR~~i~~IGY~- 79 (386)
T PRK12459 1 MSTFLFTSESVTEGHPDKLCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSSAKVDIEKIVRNVIKEIGYD- 79 (386)
T ss_pred CCceeEEecCCCCCCccHHHhhHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEccCccCCHHHHHHHHHHHhCCC-
Confidence 4469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeeccCChhhhcccCCCCC--CCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHc
Q 016575 87 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFT--KRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKN 164 (387)
Q Consensus 87 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~--~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~ 164 (387)
++|||+++|.|+++|++|||||+|||+...+ +..+++|||||||||||||||||+||||||+|||+|+++|+++||+
T Consensus 80 -~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~l~~~l~~~Rk~ 158 (386)
T PRK12459 80 -ELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARKD 158 (386)
T ss_pred -CCCCCCCceEEEeccccCChhHhcccccccccccccccCCCCcceEeeeeecCCCcccCChHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999974321 1124689999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCe
Q 016575 165 STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 244 (387)
Q Consensus 165 g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~F 244 (387)
|.+|||||||||||||+|++ + +|+||++||||+||++++++++++++|+|+||+|++|++|++++|+|||||||||
T Consensus 159 g~~~~l~PD~KsQVtv~Y~~--~--~P~rv~tivvS~QH~~~v~~~~~~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrF 234 (386)
T PRK12459 159 GLLPGLLPDGKTQVTVEYED--G--RPVRVDTIVVSAQHDESVDLETLRRDVIENVIKPVFEDFWLDDETRILINPTGRF 234 (386)
T ss_pred CCCCeecCCCceEEEEEeeC--C--ceeEEEEEEEeeccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCe
Confidence 99999999999999999964 5 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchH
Q 016575 245 VIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSV 324 (387)
Q Consensus 245 viGGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi 324 (387)
|+|||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||
T Consensus 235 viGGP~gD~GLTGRKIiVDTYGG~~~HGGGAFSGKDptKVDRSaAY~AR~iAKniVaAGlA~~ceVQlsYAIGva~Pvsi 314 (386)
T PRK12459 235 VVGGPAADTGLTGRKIMVDTYGGYARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLAKRCEVQLSYAIGKARPVSV 314 (386)
T ss_pred EeCCCcccccccCceEEEEcCCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCccceEEEEEEeecccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H------------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCc
Q 016575 325 F------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 382 (387)
Q Consensus 325 ~------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~ 382 (387)
+ +|.++|+++|||||++||++|+|++| +|++||+||||||+ +||||++|+++.
T Consensus 315 ~V~TfGT~~~~~~~i~~~i~~~Fdl~P~~Ii~~L~L~~p---iY~~ta~yGHFGr~--~f~WE~~d~~~~ 379 (386)
T PRK12459 315 QVNTFGTGTVSDEELTRAVREHFDLRPAGIIEKLNLRNP---IYRKTAAYGHFGRT--LFPWEKTDKAAL 379 (386)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHcCCCHHHHHHHcCCCCc---hhhhhcccCCCCCC--CCCcccccHHHH
Confidence 9 89999999999999999999999999 99999999999997 599999998763
No 6
>TIGR01034 metK S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX.
Probab=100.00 E-value=1.3e-177 Score=1306.06 Aligned_cols=360 Identities=62% Similarity=1.017 Sum_probs=350.6
Q ss_pred eeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCCCC
Q 016575 11 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVG 90 (387)
Q Consensus 11 lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~g 90 (387)
|||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++++|
T Consensus 1 lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~~~vd~~~ivR~~i~~IGY~~~~~g 80 (377)
T TIGR01034 1 LFTSESVSEGHPDKIADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVDIQEVARNTIKDIGYTDSDYG 80 (377)
T ss_pred CCccCcCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcCCccCCHHHHHHHHHHHhCCCCcccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 016575 91 LDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWL 170 (387)
Q Consensus 91 fd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~~~l 170 (387)
||+++|.|+++|++|||||+|||+++ ..+++|||||||||||||||||+||||||+|||+|+++|+++||+|.+|||
T Consensus 81 fd~~t~~v~~~i~~QSpDIa~gV~~~---~~~~iGAGDQGimfGYA~~ET~e~MPl~i~lAh~l~~~l~~~Rk~g~~~~l 157 (377)
T TIGR01034 81 FDAKTCAVLVAIGNQSPDIAQGVDKA---NPEEQGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRKSGTLPWL 157 (377)
T ss_pred CCCCceEEEecCCCCChHHHhccccC---ccccCCCCcceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCCee
Confidence 99999999999999999999999853 123589999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcCCC
Q 016575 171 RPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPH 250 (387)
Q Consensus 171 ~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~ 250 (387)
||||||||||+|++ + +|+||++||||+||++++++++++++|+++||+|++|+++++++|+||||||||||+|||.
T Consensus 158 ~PD~KtQVtveY~~--~--~P~rv~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrFviGGP~ 233 (377)
T TIGR01034 158 RPDGKSQVTVQYED--N--KPVRVDTIVLSTQHDPDISQKDLREAIIEEIIKPVLPAEYLDEKTKFFINPTGRFVIGGPM 233 (377)
T ss_pred cCCCceEEEEEEEC--C--ceeEEEEEEEecCCCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEeCCCc
Confidence 99999999999964 5 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH-----
Q 016575 251 GDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF----- 325 (387)
Q Consensus 251 ~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~----- 325 (387)
||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+
T Consensus 234 gDtGLTGRKIiVDTYGG~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaAgla~~c~VQlsYaIGva~Pvsi~V~tfG 313 (377)
T TIGR01034 234 GDTGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLADRCEVQLSYAIGVAEPVSIMIETFG 313 (377)
T ss_pred cccccccceEEEeccCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCcceeEEEEEEEcCcCCCceEEEEcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCc
Q 016575 326 -------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 382 (387)
Q Consensus 326 -------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~ 382 (387)
+|.++|+++|||||++||++|+|++| +|++||+||||||+ +||||++|+++.
T Consensus 314 T~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~p---iY~~ta~yGHFGr~--~~~WE~~d~~~~ 372 (377)
T TIGR01034 314 TSKKSEEELLNVVKENFDLRPGGIIEKLDLLKP---IYRKTAVYGHFGRE--EFPWEKPDKLEE 372 (377)
T ss_pred CccCCHHHHHHHHHHhcCCCHHHHHHHhCCCCc---hhhhhcccCCCCCC--CCCccccchHHH
Confidence 89999999999999999999999999 99999999999997 599999998764
No 7
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.4e-171 Score=1223.99 Aligned_cols=370 Identities=74% Similarity=1.177 Sum_probs=362.3
Q ss_pred cccceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCC
Q 016575 6 KMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFV 85 (387)
Q Consensus 6 ~~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~ 85 (387)
++.+||||||||+||||||||||||||||||||+|||+|+|||||..++|||+++|||||+|.|||+++||++++.|||+
T Consensus 2 ~~~tFLFTSESVgEGHPDKmCDQISDAiLDAhLkqDP~aKVACETv~KTgMiml~GEITska~vDYqkvVR~tik~IGyd 81 (383)
T KOG1506|consen 2 DMETFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMIMLCGEITSKAVVDYQKVVRDTIKKIGYD 81 (383)
T ss_pred CCceeEEeeccccCCCchHHHHHHHHHHHHHHhhcCCCceeeeeeccccceEEEeeeccchhhhhHHHHHHHHHHHhCCc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcC
Q 016575 86 SDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNS 165 (387)
Q Consensus 86 ~~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g 165 (387)
++..|||++||+|+++|++|||||||||+- ++..+++||||||+|||||||||||+|||++.|||+|..+|+++|++|
T Consensus 82 dsskGfD~ktcnvLvaieQQSPdIAqgvH~--~k~~edvGAGDQgimfGYATdet~e~mplt~~lahkln~~l~~~rr~g 159 (383)
T KOG1506|consen 82 DSSKGFDYKTCNVLVAIEQQSPDIAQGVHV--DKDEEDVGAGDQGIMFGYATDETPECMPLTIVLAHKLNAKLAELRRNG 159 (383)
T ss_pred ccccCccccccceeeeecccCchhhhcccc--cCCHhHcCCCcceeEeeeecCCCccccchHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999994 456679999999999999999999999999999999999999999999
Q ss_pred CCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeE
Q 016575 166 TCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFV 245 (387)
Q Consensus 166 ~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~Fv 245 (387)
++||||||+|||||++|.+++|++.|.||||||||+||+++|++++||++++|+||++|+|++++|++|.|||||+||||
T Consensus 160 ~l~WlRpdsktqVTvey~~~~Ga~vP~rVhtvviS~QH~~~is~~~lr~~l~e~vik~viPa~~lDe~Tiyhl~PsGrFv 239 (383)
T KOG1506|consen 160 TLPWLRPDSKTQVTVEYMNDNGAMVPLRVHTVVISTQHSEDITLDDLRAELKEKVIKPVIPAKYLDEKTIYHLNPSGRFV 239 (383)
T ss_pred cccccccCCcceEEEEEecCCCceeeeEEEEEEEecccCccccHHHHHHHHHHhhhhhcCcHhhcCccceEEecCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH
Q 016575 246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF 325 (387)
Q Consensus 246 iGGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~ 325 (387)
||||+||+|||||||||||||||+.||||||||||||||||||||+|||+||++|+||||+||+||+|||||+++|+|++
T Consensus 240 iGGP~GDAGlTGRKIIvDtYGGwgahGGGAFSGKD~tKVDRSaAYaaRwvAkSlV~aGl~rR~lVQvSYAIGvaePlSv~ 319 (383)
T KOG1506|consen 240 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLCRRCLVQVSYAIGVAEPLSVF 319 (383)
T ss_pred ecCCCcccccccceEEEeccCcccccCCcccCCCCccccchHHHHHHHHHHHHHHHhhhhhheeeEEeeeecCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCc
Q 016575 326 ------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 382 (387)
Q Consensus 326 ------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~ 382 (387)
+|.++|++||||||+.|+++|+|+|| ||.+||+|||||+. +||||+..+|++
T Consensus 320 v~~ygTs~~s~~ell~iv~~nFDlrPG~ivk~LdLkrp---iy~~Ta~yGHFg~~--~f~WE~pk~Lk~ 383 (383)
T KOG1506|consen 320 VFTYGTSTKSDKELLEIVKKNFDLRPGMIVKNLDLKRP---IYLKTAAYGHFGDQ--EFPWEVPKPLKI 383 (383)
T ss_pred EEeccCCCCCHHHHHHHHHhccCCCCceEEeecccccc---cccccccccccCCC--CCCccccccCCC
Confidence 89999999999999999999999999 99999999999975 599999998874
No 8
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the C-terminal domain of S=adenosylmethionine synthetase and is found in association with PF00438 from PFAM and PF02772 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3IML_B 1QM4_B 1O9T_B 1O93_A 1O92_B 1O90_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C ....
Probab=100.00 E-value=1.7e-76 Score=518.93 Aligned_cols=126 Identities=71% Similarity=1.236 Sum_probs=111.5
Q ss_pred EcCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH
Q 016575 246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF 325 (387)
Q Consensus 246 iGGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~ 325 (387)
||||+|||||||||||||||||+++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 1 iGGp~~D~GlTGRKiivDtYGg~~~hGGGafSGKD~tKvDRsaaY~aR~iAKniVaagla~~c~vqlsYaIGv~~P~si~ 80 (138)
T PF02773_consen 1 IGGPQGDTGLTGRKIIVDTYGGWARHGGGAFSGKDPTKVDRSAAYMARYIAKNIVAAGLAKRCEVQLSYAIGVAEPVSIY 80 (138)
T ss_dssp S-TTTTSEEETTSSTTTTTTTTSSB-BS---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEE
T ss_pred CCCCccccccccceEEEecccCceecCCccccCCChhhhhccHHHHHHHHHHHHHHccchHHHHhhceeeeccccCcccE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccc
Q 016575 326 ------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV 376 (387)
Q Consensus 326 ------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~ 376 (387)
+|.++|+++|||||++||++|+|++| +|++||+||||||++ |||||
T Consensus 81 v~tfgT~~~~d~~i~~~I~~~Fdl~P~~II~~L~L~~P---iY~~TA~yGHFGr~~--~~WE~ 138 (138)
T PF02773_consen 81 VDTFGTGKISDEEILEIIKENFDLRPAGIIKELDLRRP---IYRKTAAYGHFGRED--FPWEK 138 (138)
T ss_dssp EEETT-BSS-HHHHHHHHHHHS--SHHHHHHHCTTTSS---THGGGGSS-SSSSTT--SGGG-
T ss_pred EEeCCCccchHHHHHHHHHHHhCCcHHHHHHHhCcCCc---hhHhhhCcCCCCCCC--CCCCC
Confidence 89999999999999999999999999 999999999999986 99997
No 9
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=100.00 E-value=2.3e-56 Score=385.73 Aligned_cols=119 Identities=64% Similarity=1.034 Sum_probs=108.0
Q ss_pred CCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeee
Q 016575 123 DIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQ 202 (387)
Q Consensus 123 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~Q 202 (387)
++|||||||||||||||||+||||||+|||+|++||+++|++|.++||||||||||||+|+++ + +|+||++||||+|
T Consensus 2 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~~~~~~~l~PD~KsQVtveY~~~-~--~P~ri~tivvS~Q 78 (120)
T PF02772_consen 2 EIGAGDQGIMFGYACDETPELMPLPIVLAHRLARRLAEVRKNGELPWLRPDGKSQVTVEYDEN-G--KPVRIDTIVVSTQ 78 (120)
T ss_dssp CCSBSS-EEEEEEEETTSTTSS-HHHHHHHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEEET-T--EEEEEEEEEEEEE
T ss_pred CcCcCcceEEEeeEcCCCCccCChHHHHHHHHHHHHHHHHhcccCcccCCCcceeEEEeeccC-C--ceeeeeEEEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999654 5 9999999999999
Q ss_pred cCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCe
Q 016575 203 HDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 244 (387)
Q Consensus 203 H~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~F 244 (387)
|+++++++++|++|+++||+|++++++++++|+|||||||||
T Consensus 79 H~~~i~~~~ir~~i~e~Vi~~v~~~~~~~~~t~~~INPtGrF 120 (120)
T PF02772_consen 79 HDEDISLEEIREDIKEKVIKPVIPEYLLDEDTKILINPTGRF 120 (120)
T ss_dssp E-TTS-HHHHHHHHHHHTHHHHSHGGG-BTT-EEEESTTS--
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcccccCCCCcEEEECCCCCC
Confidence 999999999999999999999999999999999999999998
No 10
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the N-terminal domain of S-adenosylmethionine synthetase and is found in association with PF02772 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3RV2_A 3TDE_B 3S82_B 3IML_B 2P02_A 2OBV_A 1QM4_B 1O9T_B 1O93_A 1O92_B ....
Probab=100.00 E-value=3.5e-49 Score=331.66 Aligned_cols=100 Identities=61% Similarity=1.034 Sum_probs=93.2
Q ss_pred cceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016575 8 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 87 (387)
Q Consensus 8 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 87 (387)
++||||||||++||||||||||||||||+||++||+|||||||++++|+|+|+|||++++++|+++|||++|++|||+++
T Consensus 1 ~~~lfTSESV~~GHPDKicDqISDailD~~l~~dp~arVA~E~~~~~~~v~i~GEi~~~~~vd~~~ivR~~i~~IGY~~~ 80 (100)
T PF00438_consen 1 KKYLFTSESVSEGHPDKICDQISDAILDACLKQDPNARVACETLVSTGMVIIAGEITSRAYVDIEKIVREVIKDIGYDDS 80 (100)
T ss_dssp -EEEEEEEEE-TTSHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEETTEEEEEEEEESSHHHTHHHHHHHHHHHHT-EEG
T ss_pred CceEEeeccccCCCchhhhceeeeccchHHHhcCCCCeEEEEEEeeccEEEEEEEeccchhhhHHHHHHHHHHHhCCCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCCh
Q 016575 88 DVGLDADHCKVLVNIEQQSP 107 (387)
Q Consensus 88 ~~gfd~~~~~v~~~i~~QS~ 107 (387)
++|||+++|+|+++|++|||
T Consensus 81 ~~gfd~~tc~V~~~i~~QSp 100 (100)
T PF00438_consen 81 EYGFDYDTCEVLVAIHEQSP 100 (100)
T ss_dssp GGTEETTTSEEEEEEEEE-H
T ss_pred cCCCCCCcceEEEeecccCc
Confidence 99999999999999999998
No 11
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=98.80 E-value=3.2e-07 Score=93.71 Aligned_cols=279 Identities=23% Similarity=0.293 Sum_probs=171.8
Q ss_pred cCCCCCChhhhhhhHHHHHHH----Hhhc---------CCCCeEEEEEEee--eC------eEEEEEEeeeee---eccH
Q 016575 16 SVNEGHPDKLCDQISDAVLDA----CLEQ---------DPESKVACETCTK--TN------MVMVFGEITTKA---KVDY 71 (387)
Q Consensus 16 SV~eGHPDKicDqISDaILDa----~L~~---------Dp~arVA~E~~v~--~~------~v~i~GEitt~a---~vd~ 71 (387)
==+-||||-|||-|++++=-+ ||++ |+---||-++.-+ .| .++++|..|+.. .+++
T Consensus 24 RKGiGHPDticD~iaE~~S~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~g~~iPv 103 (399)
T PRK04439 24 RKGIGHPDTICDGIAEAVSRALSRYYLEKFGAILHHNTDKVLLVGGRSAPKFGGGEVIEPIYIILGGRATKEVGGEEIPV 103 (399)
T ss_pred ecCCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEccEEeccCCCceEEeeEEEEEecceeeeECCeEecH
Confidence 346799999999999987544 3332 6666666665433 22 357899988764 4888
Q ss_pred HHHHHHHHHhhCCCC-CCCCCCCCc-eEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHH
Q 016575 72 EKIVRDTCRSIGFVS-DDVGLDADH-CKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHV 149 (387)
Q Consensus 72 ~~ivR~~i~~IGY~~-~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~ 149 (387)
++|+.++.|+ |=. .--.+|.+. ..|...+.+-|+|+..-..+. ..-.+|-|.....|||-=.
T Consensus 104 ~~Ia~~Aak~--~L~~~l~~lD~e~hv~i~~~i~~GS~dL~~vF~r~----~~vp~ANDTS~gVGyAPlS---------- 167 (399)
T PRK04439 104 GEIAIEAAKE--YLRENLRNLDPERHVIIDVRLGPGSTDLVDVFERE----SIVPLANDTSFGVGYAPLS---------- 167 (399)
T ss_pred HHHHHHHHHH--HHHHhCccCCccccEEEEEeeCCCcHHHHHHhCCC----CCccccccccceeecCCCC----------
Confidence 8887555544 111 112345544 567788899999998655431 1134899999999998422
Q ss_pred HHHHHHHHHHHHHHc----CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEee----ecCCCCC-hHHHHHHHHHhh
Q 016575 150 LATKLGARLTEVRKN----STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLIST----QHDETVT-NDEIAADLKEHV 220 (387)
Q Consensus 150 lAh~L~~~l~~~Rk~----g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~----QH~~~v~-~~~l~~~i~e~V 220 (387)
--.+|+..++..-.+ ..+|+.+.|-|.-- +++. . -+ ++.|.+ .|-.+++ -.+.++.+++.|
T Consensus 168 ~~E~~Vl~~E~~lns~~~k~~~P~~GeDiKVMG---~R~g-~---~i---~lTVa~a~v~r~v~~~~~Y~~~k~~v~~~v 237 (399)
T PRK04439 168 ETERLVLETERYLNSEEFKKRFPEVGEDIKVMG---LRNG-D---EI---TLTIAMALVDRYVNDVDEYFEVKEEVKEKV 237 (399)
T ss_pred HHHHHHHHHHHHhcCcchhhcCCCcCCCeEEEE---EEcC-C---EE---EEEEEhHHhhhhcCCHHHHHHHHHHHHHHH
Confidence 123344444433322 46899999999752 3332 1 12 222221 3333222 124444555544
Q ss_pred cccccCCCCCCCCcEEEECCCCCe-------EEcC---CCCCcccCCceeEEecc-CCccccccccCcCCCC-Cccchhh
Q 016575 221 IKPVIPEKYLDEKTIFHLNPSGRF-------VIGG---PHGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDRSG 288 (387)
Q Consensus 221 i~~v~~~~~~~~~t~~~INPtG~F-------viGG---P~~DtGLTGRKiiVDTY-Gg~~~HGGGAfSGKDp-tKVDRSa 288 (387)
-.- + +++.+.+..++||..-.- ++=| =+||.|.+||=.=|--- -++-|-+==|-+||.| +-|=.-=
T Consensus 238 ~~~-a-~~~~~~~v~v~iNt~D~~~~~~~YLTVtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIY 315 (399)
T PRK04439 238 EDL-A-QKYTDRDVEVHINTADDPDEGGVYLTVTGTSAEMGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIY 315 (399)
T ss_pred HHH-H-HhhCCCceEEEEeCCCCCCCCcEEEEeceeehhccCCcccCcCcccCcccCCCCCccccccCCCCCcccchHHH
Confidence 432 2 334555778999996642 2223 26899999995543311 1333445568899998 4566666
Q ss_pred hhHHHHHHHHHHHh-ccccccEEEEEEeecCC--Ccc
Q 016575 289 AYIVRQAAKSIVAN-GLARRCIVQVSYAIGVP--EPL 322 (387)
Q Consensus 289 AY~AR~iAKniVaa-GlA~~ceVqlsYAIGva--~Pv 322 (387)
..+|..+|+.|++. .=.++|.|.|---||.| +|.
T Consensus 316 NvlA~~iA~~i~~~v~gv~ev~V~llSqIG~PId~P~ 352 (399)
T PRK04439 316 NVLANRIAREIYEEVEGVKEVYVRLLSQIGKPIDEPL 352 (399)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEEeccCCCcCCCCe
Confidence 78899999999984 22679999988889976 563
No 12
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=98.72 E-value=1e-06 Score=89.93 Aligned_cols=281 Identities=22% Similarity=0.253 Sum_probs=173.4
Q ss_pred cCCCCCChhhhhhhHHHHHHHH----hhc---------CCCCeEEEEEEee--------eCeEEEEEEeeeee---eccH
Q 016575 16 SVNEGHPDKLCDQISDAVLDAC----LEQ---------DPESKVACETCTK--------TNMVMVFGEITTKA---KVDY 71 (387)
Q Consensus 16 SV~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~--------~~~v~i~GEitt~a---~vd~ 71 (387)
==+-||||-|||-||+++=-++ |++ |+---||-++.-+ .=.|+++|..|+.. .+++
T Consensus 24 RKGiGHPDtIcD~iaE~vS~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~~~~iPv 103 (396)
T PF01941_consen 24 RKGIGHPDTICDGIAEAVSRALSRYYLERFGAILHHNTDKVLLVGGRSEPKFGGGEVIEPIYIILGGRATKEVGGEKIPV 103 (396)
T ss_pred ecCCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEEeccCCCceeeeeEEEEEecceeeccCCeeccH
Confidence 3467999999999999875443 322 6666666665443 22478899988864 6888
Q ss_pred HHHHHHHHHhhCCCC-CCCCCCCC-ceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHH
Q 016575 72 EKIVRDTCRSIGFVS-DDVGLDAD-HCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHV 149 (387)
Q Consensus 72 ~~ivR~~i~~IGY~~-~~~gfd~~-~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~ 149 (387)
.+|+.++.|+ |=. .--.+|.+ ...|...+.+-|+|+..-..+.. .-.+|-|..+..|||-=.
T Consensus 104 ~~Ia~~aak~--~l~~~l~~lD~e~hv~i~~~i~~GS~dL~dvf~r~~----~vp~ANDTS~gVGyAPlS---------- 167 (396)
T PF01941_consen 104 DEIAIEAAKE--WLRENLRFLDPERHVIIDCRIGPGSPDLVDVFERGK----KVPLANDTSFGVGYAPLS---------- 167 (396)
T ss_pred HHHHHHHHHH--HHHHhcccCCccccEEEEEeeCCCChHHHHHhcccc----cccccCCccceeccCCcc----------
Confidence 8886666554 211 11235555 36788889999999987666421 135899999999998422
Q ss_pred HHHHHHHHHHHHHHc----CCCCcccCCcceeEEEEEecCCCceeeeEEe--EEEEeeecCCCCC-hHHHHHHHHHhhcc
Q 016575 150 LATKLGARLTEVRKN----STCSWLRPDGKTQVTVEYYNDNGAMVPVRVH--TVLISTQHDETVT-NDEIAADLKEHVIK 222 (387)
Q Consensus 150 lAh~L~~~l~~~Rk~----g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~--tivvS~QH~~~v~-~~~l~~~i~e~Vi~ 222 (387)
-..+|+..+++.-.+ ..+|+.+.|-|.-- +++. . -+.+. .-.|+ .|-.+.+ --+.++.+++.+-
T Consensus 168 ~~E~~Vl~~Er~lns~~fk~~~p~~GeDiKVMG---~R~g-~---~i~LTvA~a~v~-r~v~~~~~Y~~~k~~v~~~v~- 238 (396)
T PF01941_consen 168 ETEKLVLETERYLNSPEFKKKFPEVGEDIKVMG---LREG-D---KITLTVAMAFVD-RYVSSLDEYFERKEEVKEEVE- 238 (396)
T ss_pred HHHHHHHHHHHHhccccccccCCCcCCCeEEEE---EEeC-C---EEEEEEEhhhhh-hhcCCHHHHHHHHHHHHHHHH-
Confidence 233444444443222 35899999999753 2332 1 12211 11111 2222221 1234444444433
Q ss_pred cccCCCCCCCCcEEEECCCCCeEEcCC----------CCCcccCCceeEEecc-CCccccccccCcCCCC-Cccchhhhh
Q 016575 223 PVIPEKYLDEKTIFHLNPSGRFVIGGP----------HGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDRSGAY 290 (387)
Q Consensus 223 ~v~~~~~~~~~t~~~INPtG~FviGGP----------~~DtGLTGRKiiVDTY-Gg~~~HGGGAfSGKDp-tKVDRSaAY 290 (387)
..+.+. .+.+..++||..-.--.||+ +||.|.+||=.=|--- -++-|-+==|-+||.| +-|=.-=..
T Consensus 239 ~~a~~~-~~~~v~v~iNt~D~~~~~~~YLTvtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIYNv 317 (396)
T PF01941_consen 239 DYAAKY-TDRDVEVHINTADDPEEGGVYLTVTGTSAEMGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNV 317 (396)
T ss_pred HHHHHh-cCCceEEEEECCCCCCCCcEEEEeceeeccccCCcccCcccccccccCCCCCCcccccCCCCCcchhhHHHHH
Confidence 233332 35667899998764323332 6899999996544321 1344556678899998 456666688
Q ss_pred HHHHHHHHHHHh-ccccccEEEEEEeecCC--Ccc
Q 016575 291 IVRQAAKSIVAN-GLARRCIVQVSYAIGVP--EPL 322 (387)
Q Consensus 291 ~AR~iAKniVaa-GlA~~ceVqlsYAIGva--~Pv 322 (387)
+|..+|+.|++. .=.++|.|.|---||.| +|.
T Consensus 318 lA~~iA~~I~~~v~gv~ev~V~llSqIG~PId~P~ 352 (396)
T PF01941_consen 318 LANEIAQRIYEEVDGVEEVYVRLLSQIGKPIDEPQ 352 (396)
T ss_pred HHHHHHHHHHHhcCCcceEEEEEccccCCCCCCCe
Confidence 899999999984 23568999988889954 564
No 13
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism]
Probab=97.84 E-value=0.00043 Score=70.40 Aligned_cols=282 Identities=22% Similarity=0.275 Sum_probs=158.6
Q ss_pred ccCCCCCChhhhhhhHHHHHHHH----hhc---------CCCCeEEEEE--------EeeeCeEEEEEEeeee---eecc
Q 016575 15 ESVNEGHPDKLCDQISDAVLDAC----LEQ---------DPESKVACET--------CTKTNMVMVFGEITTK---AKVD 70 (387)
Q Consensus 15 ESV~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~--------~v~~~~v~i~GEitt~---a~vd 70 (387)
|-=+-||||-|||-||.+|=-++ |++ |.---|+-+. ++..=.+++.|.-|.. ..++
T Consensus 23 ERKGlGHPDsiaDgiAE~vsr~Ls~~YlerfG~IlHHN~Dk~~ivgG~s~p~FGGGevi~PIyIll~GRAt~~~~g~~ip 102 (400)
T COG1812 23 ERKGLGHPDSIADGIAEAVSRALSKYYLERFGVILHHNTDKVQIVGGQSAPKFGGGEVIEPIYILLSGRATKEVEGVEIP 102 (400)
T ss_pred eecCCCCChhHHHHHHHHHHHHHHHHHHHHhCceeccccceeEEEcccccccCCCcceeeeEEEEEecceeeeecCeecc
Confidence 33467999999999988875543 222 2211122211 1122236677776643 3466
Q ss_pred HHHHHHHHHHhhCCCC-CCCCCCCCce-EEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHH
Q 016575 71 YEKIVRDTCRSIGFVS-DDVGLDADHC-KVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSH 148 (387)
Q Consensus 71 ~~~ivR~~i~~IGY~~-~~~gfd~~~~-~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i 148 (387)
+..|+-++.|+ |=. .---+|.+++ .|-..|.+-|.|+..--.+.. .+--.|-|...+.|||- |+.
T Consensus 103 ~~~ia~~AAk~--yLr~~~r~LD~E~~Viid~rig~GS~dL~dvf~~~~---~~VplANDTSfgVG~AP--------Ls~ 169 (400)
T COG1812 103 VGSIAIKAAKE--YLRENLRNLDVENHVIIDVRIGQGSVDLVDVFERAK---EEVPLANDTSFGVGFAP--------LSE 169 (400)
T ss_pred chHHHHHHHHH--HHHhhcccCCccccEEEEeeccCCchhHHHHHhhcc---cCCcccccccceeccCC--------CcH
Confidence 66665444333 111 1123566644 566778899999876544321 12358999999999984 221
Q ss_pred HHHHHHHHHHHHHH----HcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCCh-HHHHHHHHHhhccc
Q 016575 149 VLATKLGARLTEVR----KNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTN-DEIAADLKEHVIKP 223 (387)
Q Consensus 149 ~lAh~L~~~l~~~R----k~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~-~~l~~~i~e~Vi~~ 223 (387)
..+|+...+..- -...+|..+.|-|.-. ++ +++. --.+|..-+||-. -++++. -+.++.++++|-+
T Consensus 170 --tErlV~etEr~lns~~~k~~~P~vGeDIKVMg-lR--~~~~--i~LTIa~a~V~~~-v~~~~~Y~~~ke~v~~~Ved- 240 (400)
T COG1812 170 --TERLVLETERYLNSPEFKKKLPAVGEDIKVMG-LR--EGDE--ISLTIAAALVDKY-VEDIDEYIEVKEEVRKHVED- 240 (400)
T ss_pred --HHHHHHHHHHHhcChhhcccCCCcCCceEEEE-Ee--cCCe--EEEEEehHHHHHh-hcCHHHHHHHHHHHHHHHHH-
Confidence 233333333222 2256899999999864 33 2111 2245555555533 343321 2344444444432
Q ss_pred ccCCCCCCCCcEEEECCCCCeEEc-------C---CCCCcccCCceeEEecc-CCccccccccCcCCCCC-ccchhhhhH
Q 016575 224 VIPEKYLDEKTIFHLNPSGRFVIG-------G---PHGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDPT-KVDRSGAYI 291 (387)
Q Consensus 224 v~~~~~~~~~t~~~INPtG~FviG-------G---P~~DtGLTGRKiiVDTY-Gg~~~HGGGAfSGKDpt-KVDRSaAY~ 291 (387)
+..+.-+.+.+.+||-.-...-| | -+||.|.+||=.=+--- -++-|-.==|-+||.|. -|=.-=...
T Consensus 241 -lA~~it~~~v~v~iNtaD~~e~~~~YlTvTGTSaE~GDdGsVGRGNR~nGLITp~RpmSmEAaaGKNPvnHVGKiYN~L 319 (400)
T COG1812 241 -LASEITDREVEVYINTADDPERGSVYLTVTGTSAEQGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNVL 319 (400)
T ss_pred -HHhhhhccceEEEEecccccccCeEEEEeccchhhhCCCcccccccccccccCCCCCcccccccCCCchhhhHHHHHHH
Confidence 12222234456777765443222 2 47899999995533211 13334455688999995 355555667
Q ss_pred HHHHHHHHHHhc-cccccEEEEEEeecCC
Q 016575 292 VRQAAKSIVANG-LARRCIVQVSYAIGVP 319 (387)
Q Consensus 292 AR~iAKniVaaG-lA~~ceVqlsYAIGva 319 (387)
|-.||+.|+.+= =.++|.|+|-=-||.|
T Consensus 320 a~~iA~~I~~ev~~v~evyv~ilsqIGkP 348 (400)
T COG1812 320 ANQIANEIVEEVPGVEEVYVRILSQIGKP 348 (400)
T ss_pred HHHHHHHHHHhcCCcceEEEehhhhcCCc
Confidence 888888888653 2678988887788854
No 14
>PRK11023 outer membrane lipoprotein; Provisional
Probab=50.88 E-value=26 Score=32.68 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=38.7
Q ss_pred hhhhhh-hHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhC
Q 016575 23 DKLCDQ-ISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIG 83 (387)
Q Consensus 23 DKicDq-ISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IG 83 (387)
+...|. |+..|-.+++..+.-.--.++|-+.+|.|++.|+++. .. . +-+.++.+.+.
T Consensus 121 ~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~-~e--~-~~a~~iA~~v~ 178 (191)
T PRK11023 121 TASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQ-RE--A-KAAADIASRVS 178 (191)
T ss_pred cccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCH-HH--H-HHHHHHHhcCC
Confidence 455554 7778888888776655666777788999999999964 22 1 23445555543
No 15
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=48.08 E-value=32 Score=30.78 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=39.3
Q ss_pred ceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeee
Q 016575 9 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66 (387)
Q Consensus 9 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~ 66 (387)
+.||.++.-- ++ ..+|+|+|+.++-++...+.- +.|-+.+|.|.+.|.+.+.
T Consensus 12 ~~~~~~~~~~---~~--~~~~~~~i~~~i~~~~~~~~~-i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 12 EKLFDAVTAQ---AD--NEDAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred HHhcCCCCcc---cc--hHHHHHHHHHHHHhcCCCcCC-ceEEEeCCEEEEEEEeCCH
Confidence 4677654432 33 489999999998888766544 6788889999999998874
No 16
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.74 E-value=1.1e+02 Score=29.81 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH
Q 016575 287 SGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF 325 (387)
Q Consensus 287 SaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~ 325 (387)
++.|..||+-+-.-|+++|+++++. +|...|+.+.
T Consensus 204 ~~~y~l~YL~~~~Ka~~ls~~V~l~----~~~~~Pl~l~ 238 (259)
T TIGR00590 204 TLTFAIKYLNLFTKATPLSDRVTLS----MSNDVPLVVE 238 (259)
T ss_pred eeeeeHHHHHHhhhhccCCCeEEEE----EcCCCCEEEE
Confidence 5789999998777788999987764 5667776543
No 17
>PF02980 FokI_C: Restriction endonuclease FokI, catalytic domain; InterPro: IPR004233 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition (IPR004234 from INTERPRO) and cleavage functions, respectively. The catalytic domain contains only a single catalytic centre, raising the question of how monomeric FokI manages to cleave both DNA strands. The catalytic domain is sequestered in a 'piggyback' fashion by the recognition domain [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=46.45 E-value=20 Score=32.81 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=27.1
Q ss_pred cchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCC
Q 016575 284 VDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPE 320 (387)
Q Consensus 284 VDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~ 320 (387)
++=++==||||||.-++..||+.+-...+.+-+|..+
T Consensus 77 ~EgTSDKYaR~I~~wL~k~glv~~~~k~vt~~~~~~~ 113 (142)
T PF02980_consen 77 WEGTSDKYARMICGWLKKVGLVEQKTKKVTRTIGGRK 113 (142)
T ss_dssp ---HHHHHHHHHHHHHHHTTSEEE--EEEE-BTTBTT
T ss_pred cccchHHHHHHHHHHHHHhchheecceEEEeeccCcc
Confidence 3456777899999999999999999999988777554
No 18
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=45.20 E-value=6.1 Score=30.57 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=26.6
Q ss_pred cCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHH
Q 016575 104 QQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSH 148 (387)
Q Consensus 104 ~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i 148 (387)
+.++|+-+-||- . + ----|+++|||.+-|+-++=|-++|
T Consensus 11 ~~~~dlYKvVDf-L-N----ktLK~~~lmFGLs~d~~~~k~vitI 49 (52)
T PF14084_consen 11 EYNDDLYKVVDF-L-N----KTLKDKNLMFGLSKDEKEEKMVITI 49 (52)
T ss_pred cCCccHHHHHHH-H-h----hhhhhccEEEEEeecCcCCEEEEEE
Confidence 456777777762 1 1 1244899999999988777665544
No 19
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=38.62 E-value=26 Score=35.93 Aligned_cols=50 Identities=36% Similarity=0.566 Sum_probs=34.1
Q ss_pred EEeccCCcc----ccccccCcCCCCCccchhhhhHHHHH----HHHHHHhccccccEEEEEEeecCCCcchHH
Q 016575 261 IIDTYGGWG----AHGGGAFSGKDPTKVDRSGAYIVRQA----AKSIVANGLARRCIVQVSYAIGVPEPLSVF 325 (387)
Q Consensus 261 iVDTYGg~~----~HGGGAfSGKDptKVDRSaAY~AR~i----AKniVaaGlA~~ceVqlsYAIGva~Pvsi~ 325 (387)
|||.|||.+ --||||. |--.||+--.. -|.++-.| --+|.-|+.-|.++.
T Consensus 185 IVDGmgGttgf~gylg~g~M--------D~ElAYaLa~~~~~fsK~~lf~g-------Ga~~i~gv~sp~ef~ 242 (374)
T COG2441 185 IVDGMGGTTGFTGYLGGGAM--------DGELAYALANYLERFSKSLLFEG-------GAAYIAGVDSPEEFV 242 (374)
T ss_pred EEeccCCccCcccccccccc--------cHHHHHHHHHhhhhccHhheecc-------cccccccCCCHHHHH
Confidence 689998854 5567776 44688875533 36665433 346888999998887
No 20
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=33.80 E-value=49 Score=31.41 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=32.9
Q ss_pred cCCCCeEEEEEEeeeCe-------EEEEEEeeeeeeccHHHHHHHHHHh
Q 016575 40 QDPESKVACETCTKTNM-------VMVFGEITTKAKVDYEKIVRDTCRS 81 (387)
Q Consensus 40 ~Dp~arVA~E~~v~~~~-------v~i~GEitt~a~vd~~~ivR~~i~~ 81 (387)
-||+|+||+=||.++.. .-|+|-..|. ++=+++++++++.+
T Consensus 18 Gdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TE-NlGIEKvI~NvisN 65 (176)
T PF04208_consen 18 GDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTE-NLGIEKVIANVISN 65 (176)
T ss_pred CCCCCCEEEEECccccchhhhhcCceeeeccccc-ccCHHHHHHHHhcC
Confidence 48999999999988765 4566766665 78899999999765
No 21
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=31.26 E-value=55 Score=26.54 Aligned_cols=57 Identities=25% Similarity=0.415 Sum_probs=38.9
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhc-ccc-cCC---CCCCCCcEEEECCCCCeEEcCC
Q 016575 192 VRVHTVLISTQHDETVTNDEIAADLKEHVI-KPV-IPE---KYLDEKTIFHLNPSGRFVIGGP 249 (387)
Q Consensus 192 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi-~~v-~~~---~~~~~~t~~~INPtG~FviGGP 249 (387)
.+|.+||-|..=.-++++++|...+ +.+- +|- +|. .+-+++..++|=+||++++-|-
T Consensus 4 ~~i~NIva~~~l~~~idL~~la~~~-~~~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 4 FKIVNIVASFDLPFEIDLEELAEEL-ENVEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEEEEEEEEEE-SSEB-HHHHHHHS-TTEEEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred cEEEEEEEEEECCCccCHHHHHhhc-cCcEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 6899999999989999999998777 3322 221 121 1124567899999999987653
No 22
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=30.80 E-value=1.5e+02 Score=26.98 Aligned_cols=82 Identities=24% Similarity=0.306 Sum_probs=48.0
Q ss_pred EEEEEEeeeeeeccHHHHHHHHHHhhCCCCCCCCCCCCceEEEEe---eccCChhhhcccCCCCCCCCCCCCCCcce---
Q 016575 57 VMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVN---IEQQSPDIAQGVHGHFTKRPEDIGAGDQG--- 130 (387)
Q Consensus 57 v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~---i~~QS~dIa~gV~~~~~~~~~~~GAGDQG--- 130 (387)
|+..|.+|-..+--.+.++++.|++.++.+....-+.+|...++. +.-.|||=.+-+.. ....+|--==||
T Consensus 6 ~~~~~~~~~~~~~~~~~li~e~I~K~~~~~~~kr~~nrtm~~~I~~~~v~lispdtK~vl~~---k~f~dISsC~qg~~~ 82 (129)
T cd01269 6 VLYCGRVTVTHKKAPSSLIDDCIEKFSLHEQQRLKDNRTMLFQVGRFEINLISPDTKSVVLE---KNFKDISSCSQGIKH 82 (129)
T ss_pred EEEEeeEEEeeccCChHHHHHHHHHhhhhhhhhccCCcEEEEEEeccceEEEcCCcceEEEe---cCccccchhhcCCCC
Confidence 667788876545556899999999999998777777776433322 12234443333321 111111111111
Q ss_pred -eeeeeecCCCC
Q 016575 131 -HMFGYATDETS 141 (387)
Q Consensus 131 -imfGYA~~ET~ 141 (387)
=-|||=|.||.
T Consensus 83 ~dhFgFIcrEs~ 94 (129)
T cd01269 83 VDHFGFICRESP 94 (129)
T ss_pred cceEEEEeccCC
Confidence 14999999987
No 23
>KOG3447 consensus Mitochondrial/chloroplast ribosomal S17-like protein [Translation, ribosomal structure and biogenesis]
Probab=30.69 E-value=18 Score=33.12 Aligned_cols=12 Identities=50% Similarity=0.584 Sum_probs=11.2
Q ss_pred cCCceeEEeccC
Q 016575 255 LTGRKIIIDTYG 266 (387)
Q Consensus 255 LTGRKiiVDTYG 266 (387)
+||||+.+|||-
T Consensus 95 vTGkk~~~~ty~ 106 (150)
T KOG3447|consen 95 VTGKKCAGDTYL 106 (150)
T ss_pred CcCccccCcchh
Confidence 799999999995
No 24
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=29.91 E-value=2.4 Score=44.48 Aligned_cols=76 Identities=28% Similarity=0.380 Sum_probs=59.3
Q ss_pred cCCceeEEeccCCccccccccCcCCCCCccchhh-hhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHHHHHHHHHH
Q 016575 255 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSG-AYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKE 333 (387)
Q Consensus 255 LTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSa-AY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~~i~~~i~~ 333 (387)
|++|+-||||.| -|.| ||-..=.||.. .|+|=-|-|||=+..=|.+.|+++.--|....|-....+.+ +++
T Consensus 87 l~~Ry~i~~~lG------eGtF-GkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~-m~~ 158 (415)
T KOG0671|consen 87 LTNRYEIVDLLG------EGTF-GKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQ-MRD 158 (415)
T ss_pred cccceehhhhhc------CCcc-cceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEe-eeh
Confidence 699999999997 3555 88888888865 89999999999999889999999888888888876662222 134
Q ss_pred hcCCC
Q 016575 334 SFDFR 338 (387)
Q Consensus 334 ~Fdl~ 338 (387)
.||++
T Consensus 159 wFdyr 163 (415)
T KOG0671|consen 159 WFDYR 163 (415)
T ss_pred hhhcc
Confidence 45555
No 25
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=29.28 E-value=2.7e+02 Score=29.69 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=60.4
Q ss_pred CeEEEEEEeeeCeEE--EEEEeeeeeeccHH---HHHHHHHHhhCCCCCCCC--CCCCceEEEEeeccCChhhhcccCCC
Q 016575 44 SKVACETCTKTNMVM--VFGEITTKAKVDYE---KIVRDTCRSIGFVSDDVG--LDADHCKVLVNIEQQSPDIAQGVHGH 116 (387)
Q Consensus 44 arVA~E~~v~~~~v~--i~GEitt~a~vd~~---~ivR~~i~~IGY~~~~~g--fd~~~~~v~~~i~~QS~dIa~gV~~~ 116 (387)
..+-|++-.++|.++ +-..-..+..+|.+ +++++-|+++||.+-..- -.++...+++.+..|. ||.--
T Consensus 262 ~~~~~~vsk~GG~~i~~l~~R~v~~~~is~~eA~~kA~~fL~~~G~~nm~~ty~~~~d~~~~~~yv~~~~-----gV~iY 336 (435)
T TIGR02889 262 ARIYMNVSKKGGHPLWFLDNRPVSKPKISLNEAVNKAKKFLEKIGFKDMEPTESDKYDNVGVISYVYVQN-----DVRVY 336 (435)
T ss_pred ceEEEEEEcCCCEEEEEEcCCCCCCCCcCHHHHHHHHHHHHHHcCcccceehhhhccCCEEEEEEEEeeC-----CEEEc
Confidence 457899999999776 33332334667776 578999999999764321 1223345555666654 33210
Q ss_pred CCCCCCCC-CCCcceeeeee-----ecCCCCCCCCcH
Q 016575 117 FTKRPEDI-GAGDQGHMFGY-----ATDETSEFMPLS 147 (387)
Q Consensus 117 ~~~~~~~~-GAGDQGimfGY-----A~~ET~~~MPl~ 147 (387)
.+.-.+ -|-|.|=+.|| -+++++.=+|-|
T Consensus 337 --pd~IkVkVALDnGeIiGf~a~~Yl~~h~~R~ip~p 371 (435)
T TIGR02889 337 --PDQIKVKVALDDGDVVGFDARQYLTSHRKRTLPKP 371 (435)
T ss_pred --CCeEEEEEEccCCeEEEEecccchhhcccccCCCC
Confidence 010112 38899999999 778876656766
No 26
>PRK11023 outer membrane lipoprotein; Provisional
Probab=25.99 E-value=1e+02 Score=28.71 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=29.4
Q ss_pred hhhhh-hHHHHHHHHhhcCCCCe--EEEEEEeeeCeEEEEEEeeee
Q 016575 24 KLCDQ-ISDAVLDACLEQDPESK--VACETCTKTNMVMVFGEITTK 66 (387)
Q Consensus 24 KicDq-ISDaILDa~L~~Dp~ar--VA~E~~v~~~~v~i~GEitt~ 66 (387)
++-|+ |+-.|..+ |.+||..+ -.+.+-+.+|.|.+.|++.+.
T Consensus 44 ~~dD~~i~~~V~~a-L~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~ 88 (191)
T PRK11023 44 QVDDGTLELRVNNA-LSKDEQIKKEARINVTAYQGKVLLTGQSPNA 88 (191)
T ss_pred eehhHHHHHHHHHH-HhhCcccCcCceEEEEEECCEEEEEEEeCCH
Confidence 44444 44444444 45577554 468888999999999999885
No 27
>PRK04964 hypothetical protein; Provisional
Probab=25.98 E-value=56 Score=26.41 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=21.0
Q ss_pred CCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 016575 122 EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 167 (387)
Q Consensus 122 ~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~ 167 (387)
.+||.|||| |+|-+|..|-| .|.++..+..+
T Consensus 13 a~IgSGd~g------------YiP~Ai~ca~k---~L~~IAad~~L 43 (66)
T PRK04964 13 AEIGSGDLG------------YVPDALGCVLK---ALNEIAADEAL 43 (66)
T ss_pred HHhcCCccc------------cCcHHHHHHHH---HHHHHhccccC
Confidence 368999998 68999988765 44444443333
No 28
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=25.47 E-value=55 Score=31.58 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHH
Q 016575 140 TSEFMPLSHVLATKLGARLTEV 161 (387)
Q Consensus 140 T~~~MPl~i~lAh~L~~~l~~~ 161 (387)
.+--+|.|+.+||+|++|..+.
T Consensus 279 ~~~~lP~p~~yA~~~a~~~~~~ 300 (302)
T PF02171_consen 279 GPISLPAPLYYAHKLAKRGRNN 300 (302)
T ss_dssp S--SS-HHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHhh
Confidence 4566999999999999998653
No 29
>PRK10568 periplasmic protein; Provisional
Probab=24.65 E-value=1.3e+02 Score=28.42 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=31.0
Q ss_pred hHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCC
Q 016575 29 ISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGF 84 (387)
Q Consensus 29 ISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY 84 (387)
|+..|-.+++..+.-..-.+.+-+.+|.|.+.|++.+.+. .+.+.++.+.+-.
T Consensus 61 I~~~v~~~L~~~~~i~~~~I~V~v~~G~V~L~G~V~s~~~---~~~a~~ia~~v~G 113 (203)
T PRK10568 61 ITAKVKAALVDHDNIKSTDISVKTHQKVVTLSGFVESQAQ---AEEAVKVAKGVEG 113 (203)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEECCEEEEEEEeCCHHH---HHHHHHHHHhCCC
Confidence 4444555554433222345677778999999999987432 2334445555433
No 30
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=24.30 E-value=64 Score=26.07 Aligned_cols=32 Identities=31% Similarity=0.561 Sum_probs=21.6
Q ss_pred CCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 016575 122 EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 168 (387)
Q Consensus 122 ~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~~ 168 (387)
.+||.|||| |+|-+|..|-| .|.++..+..+|
T Consensus 13 a~IgSGd~g------------YiP~Ai~calk---~Ln~iAad~~Lp 44 (66)
T PF06786_consen 13 AQIGSGDQG------------YIPDAIGCALK---TLNDIAADEALP 44 (66)
T ss_pred HHhcCCccc------------cCcHHHHHHHH---HHHHHHcccccC
Confidence 368999998 68999988765 444444443333
No 31
>PRK14053 methyltransferase; Provisional
Probab=23.78 E-value=98 Score=29.80 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=33.8
Q ss_pred hcCCCCeEEEEEEeeeCe----EEEEEEeeeeeeccHHHHHHHHHHh
Q 016575 39 EQDPESKVACETCTKTNM----VMVFGEITTKAKVDYEKIVRDTCRS 81 (387)
Q Consensus 39 ~~Dp~arVA~E~~v~~~~----v~i~GEitt~a~vd~~~ivR~~i~~ 81 (387)
--||+|+||+=||.++-. .-|.|-..|. ++=+++++++++.+
T Consensus 17 vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TE-NlGIEKvI~NvisN 62 (194)
T PRK14053 17 VGNPESRIAVVTLASSIESFPEAAIWGSSKTE-NLGVEKIIVNVISN 62 (194)
T ss_pred eCCCCCcEEEEEccccccccCCceEEeecccc-ccCHHHHHHHhhcC
Confidence 348999999999999754 5677776665 78899999999764
No 32
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=22.39 E-value=93 Score=30.63 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=33.0
Q ss_pred cCCCCeEEEEEEeeeCe--------EEEEEEeeeeeeccHHHHHHHHHHh
Q 016575 40 QDPESKVACETCTKTNM--------VMVFGEITTKAKVDYEKIVRDTCRS 81 (387)
Q Consensus 40 ~Dp~arVA~E~~v~~~~--------v~i~GEitt~a~vd~~~ivR~~i~~ 81 (387)
-||+|.||+=||.++.. .-|+|-..|. ++=++++++++|.+
T Consensus 21 Gd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TE-NlGIEKvI~NvisN 69 (225)
T PRK00964 21 GDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTE-NLGIEKVIANVISN 69 (225)
T ss_pred CCCCCceEEEEccccccccchhhcCceeecccccc-cccHHHHHHHHhcC
Confidence 58999999999998766 3456766665 78899999999765
No 33
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=22.35 E-value=1.1e+02 Score=30.57 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=60.8
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHH
Q 016575 137 TDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADL 216 (387)
Q Consensus 137 ~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i 216 (387)
.++|+|--=+-+.++.+|.+-|+++ +|.+ |+..||++.-++++| ++..-.+.-|-+-|.++++++-+..+|
T Consensus 97 sSP~eEkaR~~~~~eQ~le~tLs~m--DGVi-----~ArV~I~lp~~~~~g--~~~~P~saSVfIky~~~~nl~~~v~~I 167 (246)
T COG4669 97 SSPTEEKARLNYAKEQQLEQTLSKM--DGVI-----SARVHISLPEDDDEG--KNALPSSASVFIKYSPDVNLSIYVSQI 167 (246)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhc--CceE-----EEEEEEEcCCCCccC--CCCCCceeEEEEEecCCCChhHhHHHH
Confidence 5677777777788888888888766 3543 455555544222334 444445666778999999999998888
Q ss_pred HHhhcccccCCCCCCCCcEEEECCC
Q 016575 217 KEHVIKPVIPEKYLDEKTIFHLNPS 241 (387)
Q Consensus 217 ~e~Vi~~v~~~~~~~~~t~~~INPt 241 (387)
|.-|-. .+|. +--++..+.+-|.
T Consensus 168 K~LV~n-Sv~g-L~YenISVVl~~~ 190 (246)
T COG4669 168 KRLVAN-SVPG-LQYENISVVLVPA 190 (246)
T ss_pred HHHHHh-ccCC-CchhceEEEEeec
Confidence 876654 4553 2235555555553
No 34
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=21.70 E-value=49 Score=38.74 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=15.6
Q ss_pred CCCCCcHHHHHHHHHHHH
Q 016575 141 SEFMPLSHVLATKLGARL 158 (387)
Q Consensus 141 ~~~MPl~i~lAh~L~~~l 158 (387)
..|.||+|.||.+|.+..
T Consensus 325 ~~l~~~~~~~~~~l~~~f 342 (1012)
T TIGR03315 325 RALFPLSINLAAKLSREF 342 (1012)
T ss_pred CccccchHHHHHhhHHhh
Confidence 356799999999999987
No 35
>PF03769 Attacin_C: Attacin, C-terminal region; InterPro: IPR005521 This domain is found in attacin, sarcotoxin and diptericin. All members of these proteins are insect antibacterial proteins which are induced by the fat body and subsequently secreted into the hemolymph where they act synergistically to kill the invading microorganism [].; GO: 0005576 extracellular region
Probab=21.27 E-value=1.7e+02 Score=26.15 Aligned_cols=55 Identities=22% Similarity=0.465 Sum_probs=39.8
Q ss_pred eEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcCCCCCcccCCceeEEeccCCccccccc
Q 016575 195 HTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGG 274 (387)
Q Consensus 195 ~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg~~~HGGG 274 (387)
+..-++.+|.+.+...++. +.-+..++=+|+|+.. +|-.|||.+|=||
T Consensus 56 ~gas~g~~~~~~~g~td~~----------------~~G~~NL~~S~~g~t~----------------ld~~g~~~k~~~G 103 (122)
T PF03769_consen 56 HGASLGASHTPGFGRTDVS----------------ASGRANLWRSPNGNTS----------------LDANGGYSKHLGG 103 (122)
T ss_pred cceeeeecccCCCCcceee----------------ccceeeeeeCCCCcee----------------EeeccceeeeccC
Confidence 5666778887766533322 2223456788999888 8999999999999
Q ss_pred cCcCCCC
Q 016575 275 AFSGKDP 281 (387)
Q Consensus 275 AfSGKDp 281 (387)
-|.|+.+
T Consensus 104 p~~~~~~ 110 (122)
T PF03769_consen 104 PFGGSRW 110 (122)
T ss_pred CCCCCCC
Confidence 9998844
No 36
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=20.97 E-value=1.2e+02 Score=29.00 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=39.6
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEE
Q 016575 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVI 246 (387)
Q Consensus 192 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~Fvi 246 (387)
++|++||-|+.-..+++++++...+..---.| -+|. .+-++++.++|=-||+.|+
T Consensus 8 i~IeNIVAS~~L~~elDL~~~~~~l~~aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~Vc 66 (185)
T COG2101 8 ITIENIVASVDLGQELDLEEVALDLPGAEYNPEQFPGLVYRLEEPKTAALIFRSGKVVC 66 (185)
T ss_pred cEEEEEEEEechhhhccHHHHHhhCCCCccCHhHCCeeEEEecCCcceEEEEecCcEEE
Confidence 78999999999999999998876654422211 2232 1124678999999999996
No 37
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=20.60 E-value=1.5e+02 Score=27.61 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=41.4
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCC---CCCCCCcEEEECCCCCeEEcC
Q 016575 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE---KYLDEKTIFHLNPSGRFVIGG 248 (387)
Q Consensus 192 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~---~~~~~~t~~~INPtG~FviGG 248 (387)
++|.+||-|.+=...++++++...+..-.=+|.+|. .+-+.+...+|=.+|++++=|
T Consensus 3 ~~i~Nvvas~~l~~~idL~~la~~l~n~eYeP~fpgli~R~~~Pk~t~lIF~sGKiviTG 62 (174)
T cd04517 3 ILIVNVVCQFSLRCHIDLRKLALAGRNVEYNPRYPKVTMRLREPRATASVWSSGKITITG 62 (174)
T ss_pred cEEEEEEEEEEcCCcccHHHHHhhCCCCEEeCCCCEEEEEecCCcEEEEEECCCeEEEEc
Confidence 578999999998889999999766654444443343 122466788999999999644
No 38
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=20.48 E-value=83 Score=32.08 Aligned_cols=85 Identities=21% Similarity=0.357 Sum_probs=56.9
Q ss_pred ChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCCCCCCCCceEEEEe
Q 016575 22 PDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVN 101 (387)
Q Consensus 22 PDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~ 101 (387)
-|++.|-+.+.||-+++.+..-..|.- +.-+|-++-.++.|..--+++-.-||..|++.||+-+--- .++-.+...
T Consensus 110 tdd~~~~~~~til~ay~~~~~~d~v~~--v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T--~dsw~~~~~ 185 (305)
T COG5309 110 TDDIHDAVEKTILSAYLPYNGWDDVTT--VTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTT--VDSWNVVIN 185 (305)
T ss_pred ccchhhhHHHHHHHHHhccCCCCceEE--EEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceee--cccceeeeC
Confidence 478889999999999999876654432 2223445556777776666777779999999999876211 122222222
Q ss_pred eccCChhhhcccC
Q 016575 102 IEQQSPDIAQGVH 114 (387)
Q Consensus 102 i~~QS~dIa~gV~ 114 (387)
.||+.+..|
T Consensus 186 ----np~l~~~SD 194 (305)
T COG5309 186 ----NPELCQASD 194 (305)
T ss_pred ----ChHHhhhhh
Confidence 788888765
No 39
>PRK00394 transcription factor; Reviewed
Probab=20.45 E-value=1.6e+02 Score=27.57 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=55.8
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceeEEeccCC
Q 016575 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 267 (387)
Q Consensus 192 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 267 (387)
++|.+||-|++=...+++++|...+..---+| .+|. .+-+++..++|=.||++++=|-
T Consensus 1 i~i~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tGa------------------ 62 (179)
T PRK00394 1 IKIENIVASTDLGQELDLEKVAEDLPNAEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTGA------------------ 62 (179)
T ss_pred CEEEEEEEEEEcCCCcCHHHHHhhCCCceeCcccCceEEEEecCCceEEEEEcCCcEEEEcc------------------
Confidence 36889999999999999999976554322222 1221 1124577899999999996442
Q ss_pred ccccccccCcCCCCCccchhhhhHHHHHHHHHHHhcccc
Q 016575 268 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 306 (387)
Q Consensus 268 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~ 306 (387)
|--..+.-+++.+++.+-..|.-.
T Consensus 63 ---------------~S~~~a~~a~~~~~~~l~~~g~~~ 86 (179)
T PRK00394 63 ---------------KSVEDLHEAVKIIIKKLKELGIKV 86 (179)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHcCCCc
Confidence 112366677888888888888554
No 40
>KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism]
Probab=20.07 E-value=58 Score=33.38 Aligned_cols=21 Identities=43% Similarity=0.839 Sum_probs=17.7
Q ss_pred EEEECCCCCeE-EcCCCCCccc
Q 016575 235 IFHLNPSGRFV-IGGPHGDAGL 255 (387)
Q Consensus 235 ~~~INPtG~Fv-iGGP~~DtGL 255 (387)
+|.|||+|-+. -|=|.|-|||
T Consensus 334 kwvinpsggliskghplgatgl 355 (408)
T KOG1406|consen 334 KWVINPSGGLISKGHPLGATGL 355 (408)
T ss_pred eEEECCCCccccCCCcCccchH
Confidence 99999999875 5778888876
Done!