Query 016575
Match_columns 387
No_of_seqs 155 out of 1221
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:52:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3so4_A Methionine-adenosyltran 100.0 2E-186 8E-191 1373.3 31.8 375 4-383 17-403 (415)
2 3iml_A S-adenosylmethionine sy 100.0 2E-184 5E-189 1357.0 32.1 368 7-382 6-385 (399)
3 3s82_A S-adenosylmethionine sy 100.0 3E-184 1E-188 1358.6 26.7 368 8-382 8-402 (407)
4 2p02_A S-adenosylmethionine sy 100.0 7E-183 2E-187 1345.7 30.3 368 8-382 17-396 (396)
5 1p7l_A S-adenosylmethionine sy 100.0 4E-182 1E-186 1336.2 29.3 362 9-382 2-375 (383)
6 4hpv_A S-adenosylmethionine sy 98.3 6.2E-06 2.1E-10 83.1 13.0 274 17-319 28-355 (407)
7 2gjh_A Designed protein; oblig 50.8 13 0.00045 27.8 3.3 38 70-107 18-55 (62)
8 1mp9_A Tata-binding protein; t 40.2 1.2E+02 0.004 27.6 8.6 104 192-328 13-125 (198)
9 1qys_A TOP7; alpha-beta, novel 35.5 15 0.00052 29.9 1.7 39 70-108 62-100 (106)
10 1x4q_A U4/U6 small nuclear rib 30.0 67 0.0023 25.9 4.7 57 274-347 3-59 (92)
11 3kxy_T EXSE; type-three secret 29.2 33 0.0011 25.9 2.5 21 275-299 17-37 (66)
12 2w42_A PIWI, putative uncharac 29.2 37 0.0013 34.0 3.6 25 142-166 385-409 (427)
13 1ais_A TBP, protein (tata-bind 25.2 50 0.0017 29.6 3.4 105 191-328 8-121 (182)
14 3pvv_A Chromosomal replication 20.9 56 0.0019 26.6 2.6 27 319-345 2-28 (101)
15 2z8u_A Tata-box-binding protei 20.6 73 0.0025 28.7 3.6 80 192-304 13-96 (188)
No 1
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=100.00 E-value=2.5e-186 Score=1373.35 Aligned_cols=375 Identities=61% Similarity=0.991 Sum_probs=353.9
Q ss_pred cccccceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhC
Q 016575 4 LDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIG 83 (387)
Q Consensus 4 ~~~~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IG 83 (387)
+.++++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++||
T Consensus 17 ~~~~~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IG 96 (415)
T 3so4_A 17 QGPGSRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIG 96 (415)
T ss_dssp -----CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHT
T ss_pred hhcccceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccC
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016575 84 FVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRK 163 (387)
Q Consensus 84 Y~~~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk 163 (387)
|+++++|||++||+|+++|++|||||+|||+.+ +..+++|||||||||||||||||+||||||+|||+|++||+++||
T Consensus 97 Y~~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk 174 (415)
T 3so4_A 97 YDDTNKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECRE 174 (415)
T ss_dssp CEEGGGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999963 234579999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCC
Q 016575 164 NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGR 243 (387)
Q Consensus 164 ~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~ 243 (387)
+|.+||||||+||||||+|++++|.++|+||+|||||+||++++++++|+++|+|+||++++|++|++++|+||||||||
T Consensus 175 ~g~l~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGr 254 (415)
T 3so4_A 175 KGILPWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGR 254 (415)
T ss_dssp HSSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCC
T ss_pred cCCCCeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCC
Confidence 99999999999999999998766778999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcch
Q 016575 244 FVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLS 323 (387)
Q Consensus 244 FviGGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvs 323 (387)
||||||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+|
T Consensus 255 FViGGP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvS 334 (415)
T 3so4_A 255 FVIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLS 334 (415)
T ss_dssp CCSCTTTTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSE
T ss_pred eEECCCcccccccCceEEEEccCCcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH------------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCcC
Q 016575 324 VF------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 383 (387)
Q Consensus 324 i~------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~~ 383 (387)
|+ +|.++|+++|||||++||++|+|+|| ||++||+||||||++++||||++|+|++.
T Consensus 335 i~V~TfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~l~~~ 403 (415)
T 3so4_A 335 INVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP---IFQKTAVGGHFGRNDPDFKWEFPKELEIP 403 (415)
T ss_dssp EEEEECSCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CCTGGGSSCSSSCCCTTCTTSSCCCCCCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcccccCCCCCCCCCCcCCcccCCC
Confidence 98 89999999999999999999999999 99999999999999989999999999876
No 2
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.6e-184 Score=1356.95 Aligned_cols=368 Identities=55% Similarity=0.881 Sum_probs=340.1
Q ss_pred ccceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 016575 7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS 86 (387)
Q Consensus 7 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 86 (387)
+++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||++
T Consensus 6 ~~~~lFTSESVseGHPDKicDqISDaILDa~L~~Dp~arVAcEt~~~tg~V~v~GEItt~a~vd~~~ivR~~i~~IGY~~ 85 (399)
T 3iml_A 6 ANDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDN 85 (399)
T ss_dssp CCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCC-
T ss_pred ccCceEeccccCCCCCcHHHHHHhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEecccccCHHHHHHHHHhccCCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 016575 87 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNST 166 (387)
Q Consensus 87 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~ 166 (387)
+++|||++||+|+++|++|||||+|||+.+. ++.+++|||||||||||||||||+||||||+|||+|++||+++||+|+
T Consensus 86 ~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~-~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rl~~~Rk~g~ 164 (399)
T 3iml_A 86 TDYGIDYRGCAVLVAYDKQSPDIAQGVDRAH-DNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGR 164 (399)
T ss_dssp --------CCEEEEEEEEECC-------------CTTCCBSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred cccCccCCceEEEEecccCChhHhhhhcccc-cchhhcCcCcceeEEEEecCCccccCCcHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999521 123579999999999999999999999999999999999999999999
Q ss_pred CCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEE
Q 016575 167 CSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246 (387)
Q Consensus 167 ~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~Fvi 246 (387)
+||||||+||||||+|++ | +|+||+|||||+||++++++++|+++|+|+||++++|++|++++|+|||||||||||
T Consensus 165 l~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~l~~~i~e~vi~~vip~~~l~~~t~~~INPtGrFVi 240 (399)
T 3iml_A 165 LPWLRPDAKSQVTVRYVD--G--KPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVI 240 (399)
T ss_dssp STTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTCCCCS
T ss_pred CCeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEe
Confidence 999999999999999974 5 899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH-
Q 016575 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF- 325 (387)
Q Consensus 247 GGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~- 325 (387)
|||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 241 GGP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~P~Si~V 320 (399)
T 3iml_A 241 GGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMV 320 (399)
T ss_dssp CGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCSSCSEEEE
T ss_pred CCCcccccccccceeeecCCcccCCCCccccCCCccccchHHHHHHHHHHHHHHhhcccceeEEEEEEecCcccceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -----------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCc
Q 016575 326 -----------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 382 (387)
Q Consensus 326 -----------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~ 382 (387)
+|.++|+++|||||++||++|+|++| ||++||+||||||++++||||++|+++.
T Consensus 321 ~tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~v~~ 385 (399)
T 3iml_A 321 NTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRP---IYEKTAAYGHFGREEPEFSWEAADKALA 385 (399)
T ss_dssp ECTTCCSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCCCTTCGGGCCTTHHH
T ss_pred EeCCCcccCHHHHHHHHHHHcCCCHHHHHHHcCCCCC---chhhhcCcCCCCCCCCCCCccCccHHHH
Confidence 89999999999999999999999999 9999999999999988999999999764
No 3
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=100.00 E-value=3.5e-184 Score=1358.64 Aligned_cols=368 Identities=55% Similarity=0.875 Sum_probs=342.4
Q ss_pred cceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeee---eeccHHHHHHHHHHhhCC
Q 016575 8 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK---AKVDYEKIVRDTCRSIGF 84 (387)
Q Consensus 8 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~---a~vd~~~ivR~~i~~IGY 84 (387)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+ ++||+++|||++|++|||
T Consensus 8 ~~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~vttg~V~v~GEItt~~~~a~vd~~~ivR~~i~~IGY 87 (407)
T 3s82_A 8 KGRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGY 87 (407)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCHHHHHTHHHHHHHHHHHHTC
T ss_pred CceEEeeccccCCCCcHHHhhhhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEeeCCcccccCHHHHHHHHHHhcCC
Confidence 46999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCCCCCCCceEEEEeeccCChhhhcccCCCCC-------CCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHH
Q 016575 85 VSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFT-------KRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGAR 157 (387)
Q Consensus 85 ~~~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~-------~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~ 157 (387)
+++++|||++||+|+++|++|||||+|||+.+.+ +..+++|||||||||||||||||+||||||+|||+|++|
T Consensus 88 ~~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~e~r~~~~~~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~r 167 (407)
T 3s82_A 88 DSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRR 167 (407)
T ss_dssp EEGGGTEETTTSEEEEEEEEECC--------------------------CCCEEEEEEEETTSTTSSCHHHHHHHHHHHH
T ss_pred CCcccCcCCCceEEEEecccCChHHHhhhcchhhcccccccchhhhcCCccceeEEEEecCCCcccCchHHHHHHHHHHH
Confidence 9999999999999999999999999999996421 112579999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHH-HHHHHHHhhcccccCC----CCCCC
Q 016575 158 LTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPE----KYLDE 232 (387)
Q Consensus 158 l~~~Rk~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~-l~~~i~e~Vi~~v~~~----~~~~~ 232 (387)
|+++||+|++||||||+||||||+|++ | +|+||+|||||+||++++++++ |+++|+|+||++++|+ +|+++
T Consensus 168 la~~Rk~g~l~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~~l~~~i~e~VI~~vip~~~~~~~~~~ 243 (407)
T 3s82_A 168 LTEVRKNGVLPYLRPDGKTQVTIEFED--D--VPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTS 243 (407)
T ss_dssp HHHHHHTSSSTTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTCCTTTTHHHHHHHHTHHHHHHHHCCSSCBCT
T ss_pred HHHHHHcCCCCeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 999999999999999999999999974 6 8999999999999999999999 9999999999999998 88999
Q ss_pred CcEEEECCCCCeEEcCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEE
Q 016575 233 KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQV 312 (387)
Q Consensus 233 ~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVql 312 (387)
+|+||||||||||||||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+||||||
T Consensus 244 ~t~~~INPtGrFViGGP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQl 323 (407)
T 3s82_A 244 STRLLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQV 323 (407)
T ss_dssp TCEEEESTTCCCCSCTTTTSEEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred CeEEEECCCCCeEECCCcccccccCceEEEecCCCcccCCCccccCCCccccchhHHHHHHHHHHHHHHcccccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCcchHH------------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccC
Q 016575 313 SYAIGVPEPLSVF------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 380 (387)
Q Consensus 313 sYAIGva~Pvsi~------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~ 380 (387)
|||||+++|+||+ +|.++|+++|||||++||++|+|+|| ||++||+||||||++++||||+||++
T Consensus 324 sYAIGva~PvSi~V~tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~dkv 400 (407)
T 3s82_A 324 AYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRP---IYAQTAAYGHFGRTDVELPWEQLNKV 400 (407)
T ss_dssp EECTTCSSCSEEEEECTTCCSSCHHHHHHHHHHHSCCSHHHHHHHTTCSSS---CCGGGSSSCSSSCSSSCCGGGCCTTH
T ss_pred EEecccccceEEEEEeCCCCCCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcCcCCCCCCCCCCCccCCcHH
Confidence 9999999999998 79999999999999999999999999 99999999999999889999999997
Q ss_pred Cc
Q 016575 381 KW 382 (387)
Q Consensus 381 ~~ 382 (387)
+.
T Consensus 401 ~~ 402 (407)
T 3s82_A 401 DD 402 (407)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 4
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=100.00 E-value=7.1e-183 Score=1345.71 Aligned_cols=368 Identities=67% Similarity=1.095 Sum_probs=356.5
Q ss_pred cceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016575 8 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 87 (387)
Q Consensus 8 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 87 (387)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus 17 ~~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~ 96 (396)
T 2p02_A 17 GTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDS 96 (396)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred cceEEeeccccCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcccccCCHHHHHHHHHHHhCCCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 016575 88 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 167 (387)
Q Consensus 88 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~ 167 (387)
++|||++||+|+++|++|||||+|||+... ..+++||||||||||||||||||||||||+|||+|++||+++||+|++
T Consensus 97 ~~gfd~~tc~Vl~~i~~QSpDIaqGV~~~~--~~~e~GAGDQGiMFGYAt~ET~elMPlpi~lAh~L~~rla~~Rk~g~l 174 (396)
T 2p02_A 97 SKGFDYKTCNVLVALEQQSPDIAQGVHLDR--NEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTL 174 (396)
T ss_dssp GGTEETTTSEEEEEEECCCHHHHHHHTTTC--CGGGCCBSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCCCCCceEEEEecccCChhhhhcccccc--cccccCCCCcceEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999531 113699999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEc
Q 016575 168 SWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 247 (387)
Q Consensus 168 ~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG 247 (387)
|||||||||||||+|++++|.|+|+||+|||||+||++++++++||++|+|+||++++|++|++++|+||||||||||||
T Consensus 175 ~~lrPD~KtQVTveY~~~~~~~~P~rv~tvviS~QH~~~v~~~~lr~~i~e~vi~~v~p~~~ld~~t~~~INPtGrFviG 254 (396)
T 2p02_A 175 PWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIG 254 (396)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSSCCHHHHHHHHHHTTHHHHSCGGGCCTTCEEEESTTSCCCSC
T ss_pred CccCCCcceEEEEEEEcCCCCcCceEEeEEEEeecCCCCCCHHHHHHHHHHHHHHHhcChhhcCCCeEEEECCCCCcccC
Confidence 99999999999999985446678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH--
Q 016575 248 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF-- 325 (387)
Q Consensus 248 GP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~-- 325 (387)
||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 255 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vd 334 (396)
T 2p02_A 255 GPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIF 334 (396)
T ss_dssp GGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEEEE
T ss_pred CCcccccccCceEEEEcCCCccCCCCcccCCCCccccchhhHHHHHHHHHHHHhhccCCeeEEEEEeecCcccccEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCc
Q 016575 326 ----------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 382 (387)
Q Consensus 326 ----------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~ 382 (387)
+|.++|+++|||||++||++|+|+|| ||++||+||||||+ +||||++|+++.
T Consensus 335 tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~~ 396 (396)
T 2p02_A 335 HYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IYQRTAAYGHFGRD--SFPWEVPKKLKY 396 (396)
T ss_dssp CTTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CGGGGSSSCSSSST--TCGGGSCCCCCC
T ss_pred ecCCCCCCHHHHHHHHHHHcCCCHHHHHHhcCCCCC---cchhhccccCcCCC--CCCcccccccCC
Confidence 89999999999999999999999999 99999999999997 699999999863
No 5
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=100.00 E-value=3.8e-182 Score=1336.18 Aligned_cols=362 Identities=57% Similarity=0.921 Sum_probs=353.2
Q ss_pred ceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 016575 9 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 88 (387)
Q Consensus 9 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 88 (387)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||++++
T Consensus 2 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 81 (383)
T 1p7l_A 2 KHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSD 81 (383)
T ss_dssp CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred CceeeccccCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCcEEEEEEEeccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 016575 89 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 168 (387)
Q Consensus 89 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~~ 168 (387)
+|||++||+|+++|++|||||+|||+... .+++||||||||||||||||||||||||+|||+|++||+++||+|++|
T Consensus 82 ~gfd~~tc~v~~~i~~QSpdIa~GV~~~~---~~e~GAGDQGiMFGYA~~ET~e~MPlpi~lAh~L~~rl~~~Rk~g~~~ 158 (383)
T 1p7l_A 82 MGFDANSCAVLSAIGKQSPDINQGVDRAD---PLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLP 158 (383)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHSCSS---TTTCCCSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCcCCCceEEEEecccCChHHhhhcCccc---ccccccCCCceeeEEecCCCcccCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999531 236999999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 016575 169 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 248 (387)
Q Consensus 169 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG 248 (387)
||||||||||||+|++ | +|+||+|||||+||++++++++||++|+|+||++++|++|++++|+|||||||||||||
T Consensus 159 ~lrPD~KtQVtveY~~--~--~P~rv~tvviS~QH~~~v~~~~l~~~i~e~vi~~v~p~~~ld~~t~~~iNPtGrFviGG 234 (383)
T 1p7l_A 159 WLRPDAKSQVTFQYDD--G--KIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGG 234 (383)
T ss_dssp TEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTSCCCSCH
T ss_pred ccCCCccceEEEEEeC--C--ceeEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCccccCCCeEEEECCCCCcccCC
Confidence 9999999999999984 5 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH---
Q 016575 249 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF--- 325 (387)
Q Consensus 249 P~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~--- 325 (387)
|+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 235 P~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vdt 314 (383)
T 1p7l_A 235 PMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVET 314 (383)
T ss_dssp HHHSCEETTCCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEECTTCCSCSEEEEEC
T ss_pred ccccccccCceEEEEccCCccCCCCcccCCCCCcccchhhhHHHHHHHHHHhhhccccceeeeeeeecccccccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCc
Q 016575 326 ---------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 382 (387)
Q Consensus 326 ---------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~ 382 (387)
+|.++|+++|||||++||++|+|+|| ||++||+||||||+ +||||++|+++.
T Consensus 315 fGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~~ 375 (383)
T 1p7l_A 315 FGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHP---IYKETAAYGHFGRE--HFPWEKTDKAQL 375 (383)
T ss_dssp TTCBSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCT--TSTTTCCSHHHH
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHhcCCCCC---chhhhccccCcCCC--CCCccccchHHH
Confidence 89999999999999999999999999 99999999999997 699999998764
No 6
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=98.28 E-value=6.2e-06 Score=83.14 Aligned_cols=274 Identities=20% Similarity=0.238 Sum_probs=158.4
Q ss_pred CCCCCChhhhhhhHHHHHHHH----hhc---------CCCCeEEEEEEee--------eCeEEEEEEeeeee---e----
Q 016575 17 VNEGHPDKLCDQISDAVLDAC----LEQ---------DPESKVACETCTK--------TNMVMVFGEITTKA---K---- 68 (387)
Q Consensus 17 V~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~--------~~~v~i~GEitt~a---~---- 68 (387)
=+-||||-|||-||+++=-++ |++ |+---||-+..-+ .=.|+++|..|+.. .
T Consensus 28 KGiGHPDsIcDgiaE~vS~aLs~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAT~~~~g~~~~~~ 107 (407)
T 4hpv_A 28 KGLGHPDYIADAVAEEASRKLSLYYLKKYGVILHHNLDKTLVVGGQATPRFKGGDIIQPIYIIVAGRATTEVKTESGIDQ 107 (407)
T ss_dssp ECTTSHHHHHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECCEEEEETTEEEEEECEEEEEEEEECCEEECSSCEEE
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEeeccCCCceeeeeEEEEEecceEEEECCcccccc
Confidence 367999999999999875543 322 4444444443322 22478889887652 2
Q ss_pred ccHHHHHH----HHHHh-hCCCCCCCCCCCCc-eEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCC
Q 016575 69 VDYEKIVR----DTCRS-IGFVSDDVGLDADH-CKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSE 142 (387)
Q Consensus 69 vd~~~ivR----~~i~~-IGY~~~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~ 142 (387)
+++.+|+. +.|++ +-+ +|.++ ..|...+.+-|+|+..-..+. ..-..|-|.....|||-=.+
T Consensus 108 iPv~~Ia~~AAk~~l~~~l~~------lD~e~~v~i~~~i~~GS~dL~~vf~r~----~~vp~ANDTS~gVGyAPlS~-- 175 (407)
T 4hpv_A 108 IPVGTIIIESVKEWIRNNFRY------LDAERHVIVDYKIGKGSSDLVGIFEAS----KRVPLSNDTSFGVGFAPLTK-- 175 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHCSS------CCTTTSEEEEEEEECCEEECC----------CCCCBCSSCCEEEEEESCCH--
T ss_pred cCHHHHHHHHHHHHHHHhccc------CCCCCcEEEEeeeCCCChhHHHHhcCC----CCCccccccCceeccCCCCH--
Confidence 78887764 44444 222 45443 567788999999988765431 11347999999999994321
Q ss_pred CCCcHHHHHHHHHHHHHHHHH----cCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCC-hHHHHHHHH
Q 016575 143 FMPLSHVLATKLGARLTEVRK----NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVT-NDEIAADLK 217 (387)
Q Consensus 143 ~MPl~i~lAh~L~~~l~~~Rk----~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~-~~~l~~~i~ 217 (387)
..+|+..+++.=. ...+|+.+.|-|.-- ++ +. ..+. +.|..-.|+ .|-.+.+ --+.++.++
T Consensus 176 --------~E~~Vl~~E~~Lns~~~k~~~P~~GeDIKVMG-~R--~g-~~i~-LTvA~a~v~-r~v~~~~~Y~~~K~~v~ 241 (407)
T 4hpv_A 176 --------LEKLVYETERHLNSKQFKAKLPEVGEDIKVMG-LR--RG-NEVD-LTIAMATIS-ELIEDVNHYINVKEQVR 241 (407)
T ss_dssp --------HHHHHHHHHHHHHSHHHHHHCTTEEEEEEEEE-EE--ET-TEEE-EEEEEEEEG-GGCCSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhcchhhhhhCcccCCceEEEE-Ee--eC-CeEE-EEEEhhhhh-hhhCCHHHHHHHHHHHH
Confidence 2233333332211 135899999999763 33 22 2111 222222222 3333222 123444444
Q ss_pred HhhcccccCCCCCCC-CcEEEECCCCC-------eEEcCC---CCCcccCCceeEEecc-CCccccccccCcCCCC-Ccc
Q 016575 218 EHVIKPVIPEKYLDE-KTIFHLNPSGR-------FVIGGP---HGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKV 284 (387)
Q Consensus 218 e~Vi~~v~~~~~~~~-~t~~~INPtG~-------FviGGP---~~DtGLTGRKiiVDTY-Gg~~~HGGGAfSGKDp-tKV 284 (387)
+.|-+ .+. ++-+. +..++||..-. +++=|. +||.|.+||=.=|--- -++-|-+==|-+||.| +-|
T Consensus 242 ~~v~~-~a~-~~~~~~~v~v~vNt~D~~~~g~~YLTvtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HV 319 (407)
T 4hpv_A 242 NQILD-LAS-KIAPGYNVRVYVNTGDKIDKNILYLTVTGTSAEHGDDGMTGRGNRGVGLITPMRPMSLEATAGKNPVNHV 319 (407)
T ss_dssp HHHHH-HHH-HHCTTSEEEEEECTTCBGGGTBCCEESSSCGGGGTCCEETTSSCCTTSSBCTTSCCCCCCCTTSCTTTCH
T ss_pred HHHHH-HHH-hcCCCCceEEEEecCCCcCCCceEEEecccccccCCCcccccCcccccccCCCCCccccccCCCCCccch
Confidence 43332 111 12222 56889998532 233343 6899999995433211 1334555678899998 456
Q ss_pred chhhhhHHHHHHHHHHHh--ccccccEEEEEEeecCC
Q 016575 285 DRSGAYIVRQAAKSIVAN--GLARRCIVQVSYAIGVP 319 (387)
Q Consensus 285 DRSaAY~AR~iAKniVaa--GlA~~ceVqlsYAIGva 319 (387)
=.-=..+|..||+.|++. | .++|.|.|---||.|
T Consensus 320 GKIYNvlA~~iA~~I~~~v~g-v~ev~V~llSqIG~P 355 (407)
T 4hpv_A 320 GKLYNVLANLIANKIAQEVKD-VKFSQVQVLGQIGRP 355 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-EEEEEEEEECCTTSB
T ss_pred hHHHHHHHHHHHHHHHHhcCC-cceEEEEEecccCCC
Confidence 666678899999999984 5 578999988889954
No 7
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=50.82 E-value=13 Score=27.80 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCceEEEEeeccCCh
Q 016575 70 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSP 107 (387)
Q Consensus 70 d~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~i~~QS~ 107 (387)
.+..|.-++..+.||++-...+|.+|.+|.-.+..-|.
T Consensus 18 kfaailikvfaelgyndinvtwdgdtvtvegqleggsl 55 (62)
T 2gjh_A 18 KFAAILIKVFAELGYNDINVTWDGDTVTVEGQLEGGSL 55 (62)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEcCCcc
Confidence 35567889999999999999999999999888876654
No 8
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=40.23 E-value=1.2e+02 Score=27.60 Aligned_cols=104 Identities=14% Similarity=0.217 Sum_probs=66.6
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceeEEeccCC
Q 016575 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 267 (387)
Q Consensus 192 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 267 (387)
++|.+||-|+.=.-.+++++|...+..---.|- +|. .+-++++..+|-.+|++++=|-
T Consensus 13 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGa------------------ 74 (198)
T 1mp9_A 13 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGA------------------ 74 (198)
T ss_dssp EEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEECC------------------
T ss_pred eEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEecc------------------
Confidence 689999999999999999999876544222221 222 1124678999999999996442
Q ss_pred ccccccccCcCCCCCccchhhhhHHHHHHHHHHHhcc--ccccEEEEEEee---cCCCcchHHHHH
Q 016575 268 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL--ARRCIVQVSYAI---GVPEPLSVFEIL 328 (387)
Q Consensus 268 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl--A~~ceVqlsYAI---Gva~Pvsi~~i~ 328 (387)
|--..+..++|.+++.|-..|. ++.-.+++-=-. -.+.|+.+..|.
T Consensus 75 ---------------kS~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la 125 (198)
T 1mp9_A 75 ---------------KSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAA 125 (198)
T ss_dssp ---------------SSHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHHH
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHHH
Confidence 1123577778888888888887 343343322211 234566555554
No 9
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=35.52 E-value=15 Score=29.91 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCceEEEEeeccCChh
Q 016575 70 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPD 108 (387)
Q Consensus 70 d~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~i~~QS~d 108 (387)
.+..|.-++..+.||++-...||.+|.+|.-.+..-|.+
T Consensus 62 kfaailikvfaelgyndinvtfdgdtvtvegqleggsle 100 (106)
T 1qys_A 62 KFAAILIKVFAELGYNDINVTFDGDTVTVEGQLEGGSLE 100 (106)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEC------
T ss_pred HHHHHHHHHHHHhCCcceeEEEcCCeEEEEeEEcCCccc
Confidence 456788899999999999999999999998887766543
No 10
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.99 E-value=67 Score=25.87 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=45.4
Q ss_pred ccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHHHHHHHHHHhcCCChhhhhhhcc
Q 016575 274 GAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKESFDFRPGMMTINLD 347 (387)
Q Consensus 274 GAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~~i~~~i~~~Fdl~p~~Ii~~L~ 347 (387)
.+-|+=|.|||+... +-.||+|.|..- +|..+++-|.-|.+.+++. .+|..++.+|.
T Consensus 3 ~~~~~~d~~kv~l~~--lkpWI~kkv~e~-------------LG~eD~~lVd~i~~~l~~~--~dpk~l~~~L~ 59 (92)
T 1x4q_A 3 SGSSGMALSKRELDE--LKPWIEKTVKRV-------------LGFSEPTVVTAALNCVGKG--MDKKKAADHLK 59 (92)
T ss_dssp CCSSCCCCCHHHHHH--HHHHHHHHHHHH-------------HSSCCHHHHHHHHHHHHTT--CCHHHHHHHHT
T ss_pred CCCCCccchHHhHHH--HHHHHHHHHHHH-------------cCCCcHHHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 346889999999875 489999999743 8999998888677777754 57889988886
No 11
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=29.23 E-value=33 Score=25.92 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=15.2
Q ss_pred cCcCCCCCccchhhhhHHHHHHHHH
Q 016575 275 AFSGKDPTKVDRSGAYIVRQAAKSI 299 (387)
Q Consensus 275 AfSGKDptKVDRSaAY~AR~iAKni 299 (387)
|.-|.|-| |.|=+|||+|+|+
T Consensus 17 avrgedrs----svaglarwlarnv 37 (66)
T 3kxy_T 17 AVRGEDRS----SVAGLARWLARNV 37 (66)
T ss_dssp CCCCCCCS----CHHHHHHHHHHHT
T ss_pred HHhccchh----hHHHHHHHHHHhc
Confidence 44555543 4578899999998
No 12
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=29.22 E-value=37 Score=33.96 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=21.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCC
Q 016575 142 EFMPLSHVLATKLGARLTEVRKNST 166 (387)
Q Consensus 142 ~~MPl~i~lAh~L~~~l~~~Rk~g~ 166 (387)
.=+|.|+.+||+|++++.++..-+.
T Consensus 385 v~vPap~~YAhklA~l~~~~~~~~~ 409 (427)
T 2w42_A 385 RNLPVTVNYPKLVAGIIANVNRYGG 409 (427)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcCcchHhHHHHHHHHhhhhhcCC
Confidence 4589999999999999999987444
No 13
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=25.24 E-value=50 Score=29.63 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=65.2
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceeEEeccC
Q 016575 191 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG 266 (387)
Q Consensus 191 p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 266 (387)
.++|++||-|+.=...+++++|...+..---+|- +|. .+-++++..+|-.+|++++=|-
T Consensus 8 ~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGa----------------- 70 (182)
T 1ais_A 8 KLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGA----------------- 70 (182)
T ss_dssp EEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEEE-----------------
T ss_pred ceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEecC-----------------
Confidence 4689999999999999999998754433211121 221 1124678899999999986441
Q ss_pred CccccccccCcCCCCCccchhhhhHHHHHHHHHHHhcc--ccccEEEEEE---eecCCCcchHHHHH
Q 016575 267 GWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL--ARRCIVQVSY---AIGVPEPLSVFEIL 328 (387)
Q Consensus 267 g~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl--A~~ceVqlsY---AIGva~Pvsi~~i~ 328 (387)
|--..+.-++|.+++.+-..|+ ++.-.+++-= ..-.+.|+.+..|.
T Consensus 71 ----------------kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la 121 (182)
T 1ais_A 71 ----------------KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVA 121 (182)
T ss_dssp ----------------SSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHHHH
Confidence 1123566778888888888887 3433333221 12234566555554
No 14
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=20.95 E-value=56 Score=26.59 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=21.4
Q ss_pred CCcchHHHHHHHHHHhcCCChhhhhhh
Q 016575 319 PEPLSVFEILKIVKESFDFRPGMMTIN 345 (387)
Q Consensus 319 a~Pvsi~~i~~~i~~~Fdl~p~~Ii~~ 345 (387)
++.+++..|.+.|.+.|+++|..|.-.
T Consensus 2 ~~~it~~~I~~~Va~~f~v~~~dl~s~ 28 (101)
T 3pvv_A 2 PHMISAATIMAATAEYFDTTVEELRGP 28 (101)
T ss_dssp ---CCHHHHHHHHHHHTTCCHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHhCC
Confidence 456888899999999999999988643
No 15
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=20.62 E-value=73 Score=28.73 Aligned_cols=80 Identities=18% Similarity=0.315 Sum_probs=55.2
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceeEEeccCC
Q 016575 192 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 267 (387)
Q Consensus 192 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 267 (387)
..|.+||-|+.=.-.+++++|...+..---.|- +|. .+-++++..+|-.+|++++=|-
T Consensus 13 ~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGA------------------ 74 (188)
T 2z8u_A 13 IKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGA------------------ 74 (188)
T ss_dssp CEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEEE------------------
T ss_pred cEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecC------------------
Confidence 689999999998999999999866543222221 222 1134678899999999996431
Q ss_pred ccccccccCcCCCCCccchhhhhHHHHHHHHHHHhcc
Q 016575 268 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 304 (387)
Q Consensus 268 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 304 (387)
- --..+..++|.+|+.|-..|+
T Consensus 75 --------k-------S~e~a~~a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 75 --------K-------SKEEAEIAIKKIIKELKDAGI 96 (188)
T ss_dssp --------S-------SHHHHHHHHHHHHHHHHHTTC
T ss_pred --------C-------CHHHHHHHHHHHHHHHHhcCC
Confidence 1 124677778899998888887
Done!