BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016576
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 310 bits (794), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 211/311 (67%), Gaps = 3/311 (0%)
Query: 68 DTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSC 127
D L+IFS +NP L++EI+ +G+ LGK + RF+DGE+ + ++ES+RGC +++Q +
Sbjct: 7 DKNLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTS 66
Query: 128 PPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAG 187
P NE+IMELL+M+DA +RASAK I VIPY+GYAR DRK + RE I AKL ANL+ AG
Sbjct: 67 DPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAG 126
Query: 188 ANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARA 247
A RV+A DLH+ Q G+FDIP+DH+ G P++ +Y K + RAR
Sbjct: 127 ATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKNL--EDIVIVSPDHGGVTRARK 184
Query: 248 FAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQE 307
A +L AP+AI+DKRR NVAEVMN++G+++GK A+++DD+IDTAGTI+ A L +
Sbjct: 185 LADRLK-APIAIIDKRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLAANALVEN 243
Query: 308 GAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETI 367
GA+EVYAC TH V S PA+ER+++ +E+++TN+I + E + LSV LL E I
Sbjct: 244 GAKEVYACCTHPVLSGPAVERINNSTIKELVVTNSIKLPEEKKIERFKQLSVGPLLAEAI 303
Query: 368 WRVHDDCSDGY 378
RVH+ S Y
Sbjct: 304 IRVHEQQSVSY 314
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 209/303 (68%), Gaps = 5/303 (1%)
Query: 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPA 130
L +F+G ANPAL+QE+ +G+ LGK + RF+DGEI V++QE+VRG VF++Q +C P
Sbjct: 8 LMVFTGNANPALAQEVVKILGIPLGKAMVSRFSDGEIQVEIQENVRGKDVFVLQSTCAPT 67
Query: 131 NENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQ-GRESIAAKLVANLITEAGAN 189
N+N+MEL++M+DA +RASA ITA IPYFGYAR DR+ + R +I+AK+VAN++ AG
Sbjct: 68 NDNLMELMIMVDALKRASAGRITAAIPYFGYARQDRRPRSARVAISAKVVANMLEIAGVE 127
Query: 190 RVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARAFA 249
R++ DLH+ Q G+FDIPVD++Y P++L L + RARA A
Sbjct: 128 RIITMDLHADQIQGFFDIPVDNIYATPILLGDLRKQ--NYPDLLVVSPDVGGVVRARALA 185
Query: 250 KKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGA 309
K+L + LAI+DKRR NVAEVMN+IG+V+G+ V++DDM+DTAGT+ K A +L + GA
Sbjct: 186 KQL-NCDLAIIDKRRPKANVAEVMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGA 244
Query: 310 REVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERNYF-PQLTILSVANLLGETIW 368
++V+A +TH V S A +R+++ E+++T+TIP+S + P++ LS A LL ET
Sbjct: 245 KQVFAYATHPVLSGGAADRIAASALDELVVTDTIPLSAESLACPKIRALSSAGLLAETFS 304
Query: 369 RVH 371
R+
Sbjct: 305 RIR 307
>pdb|2H06|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2H06|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2HCR|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|2HCR|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|3EFH|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3EFH|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3S5J|B Chain B, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
pdb|3S5J|A Chain A, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
Length = 326
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 2/309 (0%)
Query: 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPA 130
++IFSG+++ LSQ+I+ +GL+LGK+ K+F++ E V++ ESVRG V++VQ C
Sbjct: 4 IKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEI 63
Query: 131 NENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANR 190
N+N+MELL+MI+AC+ ASA +TAVIP F YAR D+K + R I+AKLVAN+++ AGA+
Sbjct: 64 NDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADH 123
Query: 191 VLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARAFAK 250
++ DLH+ Q G+FDIPVD++Y +P +L ++ R + A
Sbjct: 124 IITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIAD 183
Query: 251 KLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAR 310
+L + A++ K R+ N + M L+GDVK +VA++VDDM DT GTI A L GA
Sbjct: 184 RL-NVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGAT 242
Query: 311 EVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWR 369
VYA TH +FS PAI R+++ F+ V++TNTIP ++ + ++ ++ ++ +L E I R
Sbjct: 243 RVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRR 302
Query: 370 VHDDCSDGY 378
H+ S Y
Sbjct: 303 THNGESVSY 311
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 2/309 (0%)
Query: 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPA 130
++IFSG+++ LSQ+I+ +GL+LGK+ K+F++ E V++ ESVRG V++VQ C
Sbjct: 4 IKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEI 63
Query: 131 NENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANR 190
N+N+MELL+MI+AC+ ASA +TAVIP F YAR D+K + R I+AKLVAN+++ AGA+
Sbjct: 64 NDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADH 123
Query: 191 VLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARAFAK 250
++ DLH+ Q G+FDIPVD++Y +P +L ++ R + A
Sbjct: 124 IITMDLHAAQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIAD 183
Query: 251 KLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAR 310
+L + A++ K R+ N + M L+GDVK +VA++VDDM DT GTI A L GA
Sbjct: 184 RL-NVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGAT 242
Query: 311 EVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWR 369
VYA TH +FS PAI R+++ F+ V++TNTIP ++ + ++ ++ ++ +L E I R
Sbjct: 243 RVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRR 302
Query: 370 VHDDCSDGY 378
H+ S Y
Sbjct: 303 THNGESVSY 311
>pdb|2H08|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
pdb|2H08|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
Length = 326
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 196/309 (63%), Gaps = 2/309 (0%)
Query: 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPA 130
++IFSG+++ LSQ+I+ +GL+LGK+ K+F++ E V++ ESVRG V++VQ C
Sbjct: 4 IKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEI 63
Query: 131 NENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANR 190
N+N+MELL+MI+AC+ ASA +TAVIP F YAR D+K + R I+AKLVAN+++ AGA+
Sbjct: 64 NDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADH 123
Query: 191 VLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARAFAK 250
++ DLH+ Q G+FDIPVD++ +P +L ++ R + A
Sbjct: 124 IITMDLHASQIQGFFDIPVDNLMAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIAD 183
Query: 251 KLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAR 310
+L + A++ K R+ N + M L+GDVK +VA++VDDM DT GTI A L GA
Sbjct: 184 RL-NVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGAT 242
Query: 311 EVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWR 369
VYA TH +FS PAI R+++ F+ V++TNTIP ++ + ++ ++ ++ +L E I R
Sbjct: 243 RVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRR 302
Query: 370 VHDDCSDGY 378
H+ S Y
Sbjct: 303 THNGESVSY 311
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 188/351 (53%), Gaps = 36/351 (10%)
Query: 71 LRIFSGTANPA---LSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSC 127
L +FS +N + LS++I+ +G+++GK+++ + + E VQ+QESVRG VF++Q
Sbjct: 30 LVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDVFIIQTVS 89
Query: 128 PPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAG 187
N IMELL+M+ AC+ + AK+I VIPYF Y++ K + R SI +KL+A+++ +AG
Sbjct: 90 KDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSK-QCKMRKRGSIVSKLLASMMCKAG 148
Query: 188 ANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARARA 247
++ DLH + G+F+IPVD++ P +L Y+ + RA++
Sbjct: 149 LTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQS 208
Query: 248 FAKKL-----------SDAPLAIVDKRRQGHNVAEV-------------------MNLIG 277
FA++L DA +VD R V V + ++G
Sbjct: 209 FAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVG 268
Query: 278 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEV 337
DV G++A++VDD+ID + A L + GA +++ +TH + S A R+ EV
Sbjct: 269 DVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAPRRIEESAIDEV 328
Query: 338 IITNTIPVS-ERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGID 387
++TNTIP ++ P++ + ++ +L E I R+H+ S Y + ++G+D
Sbjct: 329 VVTNTIPHEVQKLQCPKIKTVDISMILSEAIRRIHNGESMSYL-FRNIGLD 378
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 173/343 (50%), Gaps = 34/343 (9%)
Query: 69 TRLRIFSGTANPA---LSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQP 125
T R+FS + A L++ I+ +G +LGK + + +GE V+++ESVRG +F++Q
Sbjct: 25 TGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQT 84
Query: 126 SCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITE 185
N +MELL+M A + A A+NI VIPYF Y++ K + R SI KL+A+++ +
Sbjct: 85 IPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQS-KMRKRGSIVCKLLASMLAK 143
Query: 186 AGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAIXXXXXXXXXXXXXXXARA 245
AG ++ DLH + G+F PVD++ P +L Y+ + RA
Sbjct: 144 AGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRA 203
Query: 246 RAFAKKL--------SDAPLAIVDKRRQGHNVAEVMN---------------------LI 276
+++A++L +A +D H+ V N ++
Sbjct: 204 QSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVV 263
Query: 277 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQE 336
GDV G++A++VDD+ID + A +L + GA ++Y +TH + S A + E
Sbjct: 264 GDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESSVDE 323
Query: 337 VIITNTIPVS-ERNYFPQLTILSVANLLGETIWRVHDDCSDGY 378
V++TNT+P ++ P++ + ++ +L E I R+H+ S Y
Sbjct: 324 VVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAY 366
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 143/296 (48%), Gaps = 23/296 (7%)
Query: 73 IFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANE 132
+ SG+ + L+ +++ + L +++ KRF D EIYV++ + + ++ + N+
Sbjct: 3 VVSGSQSQNLAFKVAKLLNTKLTRVEYKRFPDNEIYVRIVDEINDDEAVIIN-TQKNQND 61
Query: 133 NIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVL 192
I+E +++ DA R K IT V PY YAR D+K E+I+ + +A + + ++++
Sbjct: 62 AIVETILLCDALRDEGVKKITLVAPYLAYARQDKKFNPGEAISIRALAKIYSNI-VDKLI 120
Query: 193 ACDLHSGQSMGYFDIPVDHVYGQ--PVILDYLASKAIXXXXXXXXXXXXXXXARARAFAK 250
+ H +F IP +YG P + +Y+ K A FAK
Sbjct: 121 TINPHETHIKDFFTIP--FIYGDAVPKLAEYVKDK-------LNDPIVLAPDKGALEFAK 171
Query: 251 ---KLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQE 307
K+ +A ++K R ++ D K + +VDD+I T GT++ LL ++
Sbjct: 172 TASKILNAEYDYLEKTRLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQ 231
Query: 308 GAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLL 363
GA+++ A H V A+ +L S +EV+ T+T Y +++ +SVA ++
Sbjct: 232 GAKKIIAACVHPVLIGDALNKLYSAGVEEVVGTDT-------YLSEVSKVSVAEVI 280
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 114/223 (51%), Gaps = 10/223 (4%)
Query: 100 KRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYF 159
+RF DGE+Y++ E + G ++F++ + A +ME+++ + A + K++ + PY+
Sbjct: 30 RRFPDGELYLRYDEDLTGHNIFIIGNTHSDAE--VMEMILTLSAIQDYRTKSVNIIAPYY 87
Query: 160 GYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVIL 219
GYAR ++ + E I+++++ I + +N + D+H +++ Y + ++ I+
Sbjct: 88 GYARQHQRYKNGEPISSQILTE-IYSSYSNSIATVDIHDEKTLSYSKVKFSDLHANDAIV 146
Query: 220 DYLASKAIXXXXXXXXXXXXXXXARARAFAKKLSDAPLAIVDKRRQGHNVA-EVMNLIGD 278
Y + + AR + KL I KR V +V N+ D
Sbjct: 147 RYYKNVDVDYVVSPDDGGL----ARVADISAKLGKKHFFIEKKRIDDRTVEMKVPNV--D 200
Query: 279 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVF 321
V GK ++VDD+I T GTI+K + LL ++GA ++Y + H +F
Sbjct: 201 VNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 243
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 114/223 (51%), Gaps = 10/223 (4%)
Query: 100 KRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYF 159
+RF DGE+Y++ E + G ++F++ + A +ME+++ + A + K++ + PY+
Sbjct: 32 RRFPDGELYLRYDEDLTGHNIFIIGNTHSDAE--VMEMILTLSAIQDYRTKSVNIIAPYY 89
Query: 160 GYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVIL 219
GYAR ++ + E I+++++ I + +N + D+H +++ Y + ++ I+
Sbjct: 90 GYARQHQRYKNGEPISSQILTE-IYSSYSNSIATVDIHDEKTLSYSKVKFSDLHANDAIV 148
Query: 220 DYLASKAIXXXXXXXXXXXXXXXARARAFAKKLSDAPLAIVDKRRQGHNVA-EVMNLIGD 278
Y + + AR + KL I KR V +V N+ D
Sbjct: 149 RYYKNVDVDYVVSPDDGGL----ARVADISAKLGKKHFFIEKKRIDDRTVEMKVPNV--D 202
Query: 279 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVF 321
V GK ++VDD+I T GTI+K + LL ++GA ++Y + H +F
Sbjct: 203 VNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLF 245
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 277 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQE 336
G V+GK VMVDD I T + +L + GA EV+ + + P + + +E
Sbjct: 334 GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHEE 393
Query: 337 VIITNTIPVSERNYF--PQLTILSVANLLGETIWRVHDDCSDG 377
+I ++ R L+ LSV LL + I R +DD + G
Sbjct: 394 LIASSHSVEEIRQEIGADTLSFLSVEGLL-KGIGRKYDDSNCG 435
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 277 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQE 336
G V+GK VMVDD I T + +L + GA EV+ + + P + + +E
Sbjct: 334 GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHEE 393
Query: 337 VIIT--NTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDG 377
+I + + + + L+ LSV LL + I R +DD + G
Sbjct: 394 LIASSHSVDEIRQEIGADTLSFLSVEGLL-KGIGRKYDDSNCG 435
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 252 LSDAPLAIVDKR------RQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLH 305
L D PL ++D + +G + + GD+K K V+VDD+ DT T+ +
Sbjct: 48 LGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVK 107
Query: 306 QEGAREV-YAC 315
+ GA+E+ AC
Sbjct: 108 KLGAKEIKIAC 118
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 278 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEV 337
++KGK+ V++D M+ T GT+ AL + S HA+ +P ++R+ F+EV
Sbjct: 118 ELKGKIVVILDPMLATGGTLE--VALREILKHSPLKVKSVHAIAAPEGLKRIEEK-FKEV 174
Query: 338 II 339
I
Sbjct: 175 EI 176
>pdb|3OHP|A Chain A, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|B Chain B, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|C Chain C, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|D Chain D, Crystal Structure Of Hgprt From Vibrio Cholerae
Length = 177
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316
+L D+KGK ++V+D+IDT T++K +L + + C+
Sbjct: 84 DLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRICT 126
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 329
L D++ + +++D M TAG++ K +L + G +E + + +P IER+
Sbjct: 130 KLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERV 185
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 329
L D++ + +++D M TAG++ K +L + G +E + + +P IER+
Sbjct: 149 KLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERV 204
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 145 RRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSM 202
++ +A N+ + P + Y+ D K +G+ES A + A +R+ A D +G+ +
Sbjct: 34 KQVNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRL 91
>pdb|1J7J|A Chain A, Crystal Structure Of The Hprt From Salmonella Typhimurium
pdb|1J7J|B Chain B, Crystal Structure Of The Hprt From Salmonella Typhimurium
Length = 178
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 267 HNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPA 325
+V + +L D++GK ++V+D+ID+ T+SK +L G RE + + + P+
Sbjct: 78 RDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREIL---GLREPKSLAICTLLDKPS 133
>pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9S|B Chain B, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9T|A Chain A, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1G9T|B Chain B, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1GRV|A Chain A, Hypoxanthine Phosphoribosyltransferase From E. Coli
pdb|1GRV|B Chain B, Hypoxanthine Phosphoribosyltransferase From E. Coli
Length = 182
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316
+L D++GK ++V+D+ID+ T+SK +L + + C+
Sbjct: 89 DLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICT 131
>pdb|2GGV|B Chain B, Crystal Structure Of The West Nile Virus Ns2b-Ns3
Protease, His51ala Mutant
Length = 185
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316
L+G + VMV+ + T +KGAAL+ EG + Y S
Sbjct: 28 GLLGSYQAGAGVMVEGVFHTLWATTKGAALMSGEGRLDPYWGS 70
>pdb|2IJO|B Chain B, Crystal Structure Of The West Nile Virus Ns2b-Ns3 Protease
Complexed With Bovine Pancreatic Trypsin Inhibitor
Length = 192
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316
L+G + VMV+ + T +KGAAL+ EG + Y S
Sbjct: 29 GLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGS 71
>pdb|2FP7|B Chain B, West Nile Virus Ns2bNS3PROTEASE IN COMPLEX WITH
BZ-Nle-Lys-Arg-Arg-H
Length = 172
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316
L+G + VMV+ + T +KGAAL+ EG + Y S
Sbjct: 14 GLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGS 56
>pdb|3E90|B Chain B, West Nile Vi Rus Ns2b-Ns3protease In Complexed With
Inhibitor Naph-Kkr-H
pdb|3E90|D Chain D, West Nile Vi Rus Ns2b-Ns3protease In Complexed With
Inhibitor Naph-Kkr-H
Length = 198
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316
L+G + VMV+ + T +KGAAL+ EG + Y S
Sbjct: 33 GLLGSYQAGAGVMVEGVFHTLWHTTKGAALMSGEGRLDPYWGS 75
>pdb|1WD5|A Chain A, Crystal Structure Of Tt1426 From Thermus Thermophilus Hb8
Length = 208
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS 331
KG+ V+VDD + T + +++ QEG V SP A+ERL +
Sbjct: 119 KGRDVVLVDDGVATGASXEAALSVVFQEGP--RRVVVAVPVASPEAVERLKA 168
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 256 PLAIVDKRRQGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTISKGAALLHQEGA 309
PLA + + + H + G V KG+ V+++D+I T G++ A +EGA
Sbjct: 125 PLAYIRSKPKDHGAGNQIE--GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGA 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,132,171
Number of Sequences: 62578
Number of extensions: 376959
Number of successful extensions: 831
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 29
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)