Query 016576
Match_columns 387
No_of_seqs 279 out of 2586
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0462 PrsA Phosphoribosylpyr 100.0 3E-97 7E-102 717.6 36.8 312 68-386 2-314 (314)
2 PRK04923 ribose-phosphate pyro 100.0 2.8E-86 6E-91 652.2 37.4 314 68-387 4-319 (319)
3 PRK02269 ribose-phosphate pyro 100.0 1.7E-85 3.6E-90 647.8 36.7 312 69-386 4-317 (320)
4 PRK00553 ribose-phosphate pyro 100.0 4.5E-85 9.8E-90 646.8 37.5 314 66-386 5-322 (332)
5 PTZ00145 phosphoribosylpyropho 100.0 1.3E-84 2.7E-89 657.0 36.3 312 68-386 117-436 (439)
6 KOG1448 Ribose-phosphate pyrop 100.0 1.3E-85 2.7E-90 624.3 22.9 312 69-386 2-314 (316)
7 PRK02458 ribose-phosphate pyro 100.0 1.4E-83 3E-88 634.3 36.5 313 66-386 5-317 (323)
8 PRK02812 ribose-phosphate pyro 100.0 6.7E-83 1.4E-87 630.5 38.8 314 66-386 17-330 (330)
9 PRK03092 ribose-phosphate pyro 100.0 8.8E-81 1.9E-85 610.3 34.1 299 82-386 1-301 (304)
10 PRK01259 ribose-phosphate pyro 100.0 1.7E-79 3.6E-84 602.7 37.1 308 71-386 1-309 (309)
11 PRK07199 phosphoribosylpyropho 100.0 2.2E-79 4.8E-84 599.7 37.2 292 70-374 2-297 (301)
12 PRK06827 phosphoribosylpyropho 100.0 1.9E-79 4.1E-84 614.3 36.7 310 68-386 6-368 (382)
13 PLN02369 ribose-phosphate pyro 100.0 5.8E-79 1.2E-83 597.0 35.7 302 80-386 1-302 (302)
14 PLN02297 ribose-phosphate pyro 100.0 1.8E-76 3.8E-81 581.9 35.9 299 63-368 9-325 (326)
15 TIGR01251 ribP_PPkin ribose-ph 100.0 5.1E-76 1.1E-80 578.3 37.5 306 71-386 1-308 (308)
16 PRK00934 ribose-phosphate pyro 100.0 1.5E-74 3.2E-79 562.2 35.5 284 72-368 1-284 (285)
17 KOG1503 Phosphoribosylpyrophos 100.0 1.3E-69 2.8E-74 500.6 27.3 317 64-387 2-349 (354)
18 PF13793 Pribosyltran_N: N-ter 100.0 5.3E-41 1.2E-45 285.7 14.4 116 71-187 1-116 (116)
19 PF14572 Pribosyl_synth: Phosp 100.0 2.9E-40 6.3E-45 299.3 12.7 152 229-386 2-184 (184)
20 PRK13811 orotate phosphoribosy 99.8 5.2E-20 1.1E-24 166.8 15.1 153 177-334 3-156 (170)
21 PRK13812 orotate phosphoribosy 99.7 9.5E-16 2.1E-20 139.7 14.6 153 175-334 2-159 (176)
22 PRK08525 amidophosphoribosyltr 99.7 4.6E-16 1E-20 160.4 13.9 146 217-365 263-426 (445)
23 PRK13809 orotate phosphoribosy 99.7 2.2E-15 4.8E-20 140.5 15.1 153 177-332 11-168 (206)
24 PLN02293 adenine phosphoribosy 99.6 9.4E-15 2E-19 134.4 15.7 109 230-339 62-183 (187)
25 PRK13810 orotate phosphoribosy 99.5 1.2E-13 2.6E-18 127.0 15.3 155 175-334 15-174 (187)
26 PRK00129 upp uracil phosphorib 99.5 1.5E-13 3.2E-18 128.5 13.6 114 230-345 70-186 (209)
27 PRK02304 adenine phosphoribosy 99.5 3.1E-13 6.8E-18 122.8 14.5 127 211-338 28-171 (175)
28 TIGR00336 pyrE orotate phospho 99.5 1.9E-13 4.1E-18 124.1 12.7 145 183-331 3-158 (173)
29 PRK00455 pyrE orotate phosphor 99.5 6.9E-13 1.5E-17 123.3 15.9 156 175-334 4-165 (202)
30 TIGR01203 HGPRTase hypoxanthin 99.5 1.9E-13 4.1E-18 123.4 11.8 101 215-317 12-120 (166)
31 TIGR01367 pyrE_Therm orotate p 99.5 8.1E-13 1.8E-17 121.6 15.2 134 179-319 2-143 (187)
32 PRK05793 amidophosphoribosyltr 99.5 2.6E-13 5.7E-18 140.8 13.2 145 217-364 276-438 (469)
33 PRK09162 hypoxanthine-guanine 99.5 3.6E-13 7.9E-18 123.2 12.5 102 214-317 25-133 (181)
34 PRK07322 adenine phosphoribosy 99.5 4.2E-13 9.1E-18 122.5 12.7 116 200-316 19-155 (178)
35 PRK12560 adenine phosphoribosy 99.5 1E-12 2.2E-17 120.9 13.6 151 190-345 11-181 (187)
36 PRK02277 orotate phosphoribosy 99.4 7E-13 1.5E-17 123.2 12.2 106 230-339 85-195 (200)
37 COG0461 PyrE Orotate phosphori 99.4 3.4E-12 7.3E-17 118.2 16.5 156 176-335 3-165 (201)
38 PF00156 Pribosyltran: Phospho 99.4 1.2E-12 2.6E-17 111.0 12.4 101 215-318 14-125 (125)
39 PRK05500 bifunctional orotidin 99.4 3.4E-12 7.3E-17 132.3 15.0 188 131-332 248-443 (477)
40 PRK15423 hypoxanthine phosphor 99.4 4.5E-12 9.8E-17 115.8 13.6 107 214-324 17-132 (178)
41 TIGR01090 apt adenine phosphor 99.4 4.5E-12 9.8E-17 114.6 13.4 113 218-331 34-159 (169)
42 TIGR01091 upp uracil phosphori 99.4 4.4E-12 9.6E-17 118.4 13.1 114 230-345 68-184 (207)
43 PRK05205 bifunctional pyrimidi 99.3 8.1E-12 1.7E-16 113.7 11.7 103 215-317 16-132 (176)
44 COG1926 Predicted phosphoribos 99.3 1.1E-11 2.4E-16 114.3 11.9 147 212-363 8-205 (220)
45 PLN02238 hypoxanthine phosphor 99.3 1.4E-11 3.1E-16 113.5 12.6 108 215-327 21-140 (189)
46 PRK11595 DNA utilization prote 99.3 1.4E-12 3.1E-17 123.3 5.3 146 151-317 63-223 (227)
47 PRK09219 xanthine phosphoribos 99.3 4.4E-11 9.4E-16 110.3 14.9 127 218-345 38-183 (189)
48 TIGR01744 XPRTase xanthine pho 99.3 4.7E-11 1E-15 110.3 14.1 128 216-344 36-182 (191)
49 COG0634 Hpt Hypoxanthine-guani 99.3 4.3E-11 9.3E-16 107.7 12.6 105 215-324 21-133 (178)
50 PRK08558 adenine phosphoribosy 99.2 1E-09 2.2E-14 104.8 15.4 112 218-331 99-225 (238)
51 TIGR00201 comF comF family pro 99.1 6.9E-10 1.5E-14 102.2 13.4 141 153-317 36-188 (190)
52 PTZ00271 hypoxanthine-guanine 99.1 4.2E-10 9.2E-15 105.4 11.8 108 214-324 36-158 (211)
53 TIGR01743 purR_Bsub pur operon 99.1 1.1E-09 2.4E-14 105.8 14.3 124 218-345 116-255 (268)
54 COG1040 ComFC Predicted amidop 99.1 2.9E-10 6.2E-15 107.6 9.9 143 151-317 67-220 (225)
55 PTZ00149 hypoxanthine phosphor 99.1 6.7E-10 1.5E-14 105.9 12.5 106 215-324 67-190 (241)
56 PRK06031 phosphoribosyltransfe 99.1 2E-09 4.3E-14 102.4 15.1 127 217-345 71-220 (233)
57 COG0503 Apt Adenine/guanine ph 99.1 1.5E-09 3.2E-14 99.4 13.7 89 231-320 54-155 (179)
58 PRK09123 amidophosphoribosyltr 99.1 1.3E-09 2.9E-14 113.5 14.1 138 217-364 283-445 (479)
59 COG0856 Orotate phosphoribosyl 99.1 5.1E-10 1.1E-14 100.4 8.8 87 229-316 85-176 (203)
60 PRK09213 pur operon repressor; 99.0 2.2E-09 4.8E-14 104.0 13.0 124 218-345 118-257 (271)
61 PRK07272 amidophosphoribosyltr 99.0 7.3E-10 1.6E-14 115.4 9.1 147 216-365 272-436 (484)
62 PRK08341 amidophosphoribosyltr 99.0 2E-09 4.3E-14 111.1 11.0 101 217-319 259-372 (442)
63 PLN02440 amidophosphoribosyltr 99.0 3.4E-09 7.4E-14 110.6 12.6 99 216-317 262-376 (479)
64 PRK09246 amidophosphoribosyltr 98.9 6.8E-09 1.5E-13 108.9 11.2 100 217-317 280-394 (501)
65 KOG1712 Adenine phosphoribosyl 98.9 1.5E-08 3.2E-13 89.9 9.7 121 215-337 45-178 (183)
66 TIGR01134 purF amidophosphorib 98.8 1.3E-08 2.8E-13 105.3 10.3 139 216-364 260-423 (442)
67 PRK07349 amidophosphoribosyltr 98.8 2.4E-08 5.3E-13 104.4 11.7 99 216-316 299-412 (500)
68 PRK06781 amidophosphoribosyltr 98.8 1.5E-08 3.3E-13 105.4 10.1 101 217-319 271-386 (471)
69 PRK09177 xanthine-guanine phos 98.8 3.9E-08 8.4E-13 88.1 10.7 87 215-306 19-109 (156)
70 PRK07631 amidophosphoribosyltr 98.8 2.6E-08 5.6E-13 103.7 9.8 101 217-319 271-386 (475)
71 PRK06388 amidophosphoribosyltr 98.7 1.7E-07 3.6E-12 97.7 12.4 101 217-319 279-394 (474)
72 PF14681 UPRTase: Uracil phosp 98.7 1.6E-07 3.4E-12 87.9 10.9 114 230-345 67-185 (207)
73 COG0035 Upp Uracil phosphoribo 98.7 2E-07 4.3E-12 86.7 11.3 114 230-345 70-187 (210)
74 PLN02541 uracil phosphoribosyl 98.7 2.4E-07 5.2E-12 88.7 11.9 113 231-345 103-221 (244)
75 COG2236 Predicted phosphoribos 98.7 1.1E-07 2.4E-12 87.8 9.1 97 215-313 16-119 (192)
76 PRK07847 amidophosphoribosyltr 98.5 4.1E-07 8.8E-12 95.6 10.9 101 217-319 290-405 (510)
77 TIGR01251 ribP_PPkin ribose-ph 98.5 2.6E-06 5.7E-11 84.3 15.9 134 71-225 162-297 (308)
78 KOG3367 Hypoxanthine-guanine p 98.5 5.4E-07 1.2E-11 80.9 8.2 106 216-325 47-166 (216)
79 COG2065 PyrR Pyrimidine operon 98.5 9.3E-07 2E-11 79.0 9.6 102 215-316 16-132 (179)
80 COG0034 PurF Glutamine phospho 98.1 9.7E-06 2.1E-10 82.9 7.9 100 216-317 270-384 (470)
81 KOG0572 Glutamine phosphoribos 97.5 0.00019 4E-09 72.0 6.1 84 232-316 293-391 (474)
82 PRK02812 ribose-phosphate pyro 97.2 0.019 4.2E-07 57.5 17.2 138 230-370 20-176 (330)
83 PRK02269 ribose-phosphate pyro 97.1 0.021 4.6E-07 57.0 15.5 136 230-370 4-160 (320)
84 PRK00934 ribose-phosphate pyro 97.0 0.023 5E-07 55.7 15.3 125 71-223 157-284 (285)
85 PRK07199 phosphoribosylpyropho 97.0 0.03 6.5E-07 55.4 16.1 129 71-225 163-293 (301)
86 PRK02458 ribose-phosphate pyro 96.9 0.051 1.1E-06 54.4 16.8 136 230-370 8-164 (323)
87 PRK00553 ribose-phosphate pyro 96.9 0.054 1.2E-06 54.4 16.6 135 230-369 8-163 (332)
88 PRK03092 ribose-phosphate pyro 96.8 0.034 7.4E-07 55.1 14.8 122 245-370 2-144 (304)
89 PTZ00145 phosphoribosylpyropho 96.8 0.033 7.1E-07 57.8 14.7 137 230-369 118-275 (439)
90 COG0462 PrsA Phosphoribosylpyr 96.8 0.048 1E-06 54.2 15.2 135 232-371 5-160 (314)
91 PRK01259 ribose-phosphate pyro 96.8 0.052 1.1E-06 54.0 15.4 129 238-370 6-155 (309)
92 PRK04923 ribose-phosphate pyro 96.6 0.073 1.6E-06 53.2 15.1 139 69-225 167-307 (319)
93 PF13793 Pribosyltran_N: N-ter 96.3 0.098 2.1E-06 44.6 12.2 85 235-323 3-91 (116)
94 PF15609 PRTase_2: Phosphoribo 96.2 0.024 5.1E-07 52.4 8.6 103 212-317 37-157 (191)
95 PLN02369 ribose-phosphate pyro 96.2 0.19 4.1E-06 49.9 15.7 136 69-225 151-291 (302)
96 PLN02297 ribose-phosphate pyro 96.2 0.26 5.6E-06 49.4 16.4 139 230-370 15-179 (326)
97 PRK06827 phosphoribosylpyropho 96.0 0.27 5.9E-06 50.3 16.0 136 230-370 7-198 (382)
98 KOG1017 Predicted uracil phosp 92.9 0.37 8E-06 44.9 7.1 69 274-345 182-254 (267)
99 PRK09162 hypoxanthine-guanine 92.9 1.1 2.3E-05 41.0 10.2 85 70-158 42-134 (181)
100 TIGR01203 HGPRTase hypoxanthin 91.7 2.3 4.9E-05 38.4 10.8 84 71-158 29-121 (166)
101 PRK15423 hypoxanthine phosphor 91.3 3.9 8.4E-05 37.4 11.9 83 71-157 37-128 (178)
102 PRK00129 upp uracil phosphorib 90.1 3.8 8.3E-05 38.2 11.0 85 70-158 71-161 (209)
103 TIGR01091 upp uracil phosphori 88.9 4.8 0.0001 37.6 10.7 85 70-158 69-159 (207)
104 PF14572 Pribosyl_synth: Phosp 87.2 2.3 4.9E-05 39.3 7.2 99 109-225 75-173 (184)
105 PLN02238 hypoxanthine phosphor 86.3 11 0.00023 34.8 11.2 85 70-158 37-134 (189)
106 PLN02440 amidophosphoribosyltr 85.2 10 0.00022 40.1 11.7 120 69-195 276-419 (479)
107 PF00156 Pribosyltran: Phospho 83.7 11 0.00024 31.2 9.3 78 76-157 35-124 (125)
108 PRK08525 amidophosphoribosyltr 83.1 7.3 0.00016 40.8 9.6 85 70-158 277-377 (445)
109 PRK09123 amidophosphoribosyltr 83.1 15 0.00033 38.8 12.0 83 70-156 297-395 (479)
110 PRK07272 amidophosphoribosyltr 82.8 6.9 0.00015 41.4 9.3 120 70-196 287-430 (484)
111 PRK13811 orotate phosphoribosy 82.8 7.9 0.00017 35.0 8.5 79 76-160 64-142 (170)
112 PRK02304 adenine phosphoribosy 82.6 16 0.00035 32.9 10.6 73 76-152 59-145 (175)
113 TIGR01090 apt adenine phosphor 82.3 8.5 0.00018 34.5 8.6 76 77-156 55-144 (169)
114 TIGR01367 pyrE_Therm orotate p 81.9 21 0.00045 32.9 11.1 78 70-154 60-138 (187)
115 PRK00455 pyrE orotate phosphor 81.5 17 0.00037 33.6 10.5 81 70-155 66-147 (202)
116 PRK05205 bifunctional pyrimidi 81.3 17 0.00036 32.9 10.2 84 71-158 34-133 (176)
117 COG2179 Predicted hydrolase of 80.4 21 0.00046 32.6 10.2 111 180-300 20-150 (175)
118 PF15610 PRTase_3: PRTase ComF 79.9 2 4.3E-05 41.9 3.7 39 278-316 135-173 (274)
119 PRK02277 orotate phosphoribosy 79.9 13 0.00028 34.5 9.1 83 70-156 87-175 (200)
120 PTZ00271 hypoxanthine-guanine 79.6 23 0.00049 33.4 10.7 83 70-156 58-153 (211)
121 PRK05793 amidophosphoribosyltr 78.5 15 0.00033 38.7 10.1 85 70-158 290-390 (469)
122 PRK08341 amidophosphoribosyltr 77.6 15 0.00032 38.6 9.6 84 69-156 272-369 (442)
123 PRK13812 orotate phosphoribosy 76.5 15 0.00032 33.5 8.2 72 76-152 66-138 (176)
124 PLN02501 digalactosyldiacylgly 76.1 34 0.00074 38.2 12.1 174 70-253 278-460 (794)
125 PLN02293 adenine phosphoribosy 75.6 43 0.00093 30.8 11.1 76 76-155 70-159 (187)
126 TIGR01134 purF amidophosphorib 75.0 31 0.00066 36.1 11.2 116 69-194 274-416 (442)
127 TIGR00336 pyrE orotate phospho 74.2 16 0.00035 32.9 7.9 78 77-159 63-145 (173)
128 TIGR02990 ectoine_eutA ectoine 72.3 33 0.0007 32.9 9.8 101 138-258 109-210 (239)
129 PRK07349 amidophosphoribosyltr 72.2 24 0.00053 37.5 9.7 83 70-156 314-412 (500)
130 PTZ00149 hypoxanthine phosphor 71.0 46 0.001 32.1 10.5 86 69-158 81-187 (241)
131 COG0634 Hpt Hypoxanthine-guani 70.5 54 0.0012 30.2 10.2 84 69-156 35-128 (178)
132 PF01488 Shikimate_DH: Shikima 66.8 13 0.00029 31.9 5.4 37 276-316 7-43 (135)
133 PRK09246 amidophosphoribosyltr 66.0 34 0.00074 36.4 9.3 83 70-156 295-393 (501)
134 cd05014 SIS_Kpsf KpsF-like pro 64.6 38 0.00082 28.1 7.7 79 70-154 2-80 (128)
135 COG0034 PurF Glutamine phospho 64.2 19 0.00042 37.7 6.7 117 70-197 285-429 (470)
136 PRK06781 amidophosphoribosyltr 64.0 36 0.00077 36.0 8.9 84 69-156 284-383 (471)
137 PRK11595 DNA utilization prote 60.2 30 0.00066 32.6 6.9 72 80-155 135-221 (227)
138 PRK12560 adenine phosphoribosy 59.8 59 0.0013 29.8 8.6 73 77-153 60-146 (187)
139 KOG0814 Glyoxylase [General fu 57.5 9.6 0.00021 35.2 2.8 43 274-319 24-66 (237)
140 PF06300 Tsp45I: Tsp45I type I 56.8 33 0.00071 32.9 6.3 159 131-322 53-228 (261)
141 PF01972 SDH_sah: Serine dehyd 56.5 1.1E+02 0.0023 30.3 10.0 97 177-299 38-137 (285)
142 PF01380 SIS: SIS domain SIS d 56.5 7.1 0.00015 32.4 1.8 83 67-154 4-86 (131)
143 PRK07322 adenine phosphoribosy 55.9 1.5E+02 0.0033 26.8 10.5 85 76-165 60-163 (178)
144 PRK13809 orotate phosphoribosy 53.0 76 0.0017 29.7 8.2 72 78-153 77-150 (206)
145 PRK07631 amidophosphoribosyltr 52.9 67 0.0015 34.0 8.7 83 70-156 285-383 (475)
146 TIGR01143 murF UDP-N-acetylmur 50.3 1.1E+02 0.0023 31.4 9.6 108 79-201 258-369 (417)
147 PRK11930 putative bifunctional 49.5 1.8E+02 0.0039 32.8 11.9 241 79-343 290-540 (822)
148 smart00450 RHOD Rhodanese Homo 49.5 30 0.00065 26.5 4.3 35 279-316 54-88 (100)
149 PF14681 UPRTase: Uracil phosp 49.5 1.8E+02 0.0038 27.0 10.1 82 70-155 68-157 (207)
150 cd00158 RHOD Rhodanese Homolog 49.0 33 0.00071 25.9 4.4 35 279-316 48-82 (89)
151 PRK03803 murD UDP-N-acetylmura 49.0 67 0.0015 33.1 7.9 154 79-250 277-434 (448)
152 PRK07847 amidophosphoribosyltr 48.9 1.3E+02 0.0028 32.3 10.0 82 71-156 305-402 (510)
153 COG2185 Sbm Methylmalonyl-CoA 48.5 37 0.0008 30.2 5.0 46 296-342 79-124 (143)
154 COG0856 Orotate phosphoribosyl 48.1 1E+02 0.0022 28.6 7.8 75 77-155 95-175 (203)
155 PRK14093 UDP-N-acetylmuramoyla 47.7 1.9E+02 0.0042 30.2 11.2 108 79-199 295-412 (479)
156 COG0771 MurD UDP-N-acetylmuram 47.4 2.2E+02 0.0049 30.0 11.4 164 68-239 7-222 (448)
157 cd01529 4RHOD_Repeats Member o 47.0 34 0.00073 27.0 4.3 33 280-315 55-87 (96)
158 PF02006 DUF137: Protein of un 46.9 36 0.00078 31.1 4.7 82 140-224 49-149 (178)
159 KOG1503 Phosphoribosylpyrophos 46.2 2.9E+02 0.0063 26.9 12.5 135 232-369 9-161 (354)
160 PF02875 Mur_ligase_C: Mur lig 45.9 1.1E+02 0.0025 23.9 7.2 63 283-345 13-83 (91)
161 PF04914 DltD_C: DltD C-termin 45.1 68 0.0015 27.9 6.1 73 132-213 33-112 (130)
162 cd01444 GlpE_ST GlpE sulfurtra 44.8 31 0.00068 26.9 3.7 33 280-315 55-87 (96)
163 PRK13810 orotate phosphoribosy 43.8 1.5E+02 0.0031 27.3 8.4 79 77-160 82-160 (187)
164 TIGR00640 acid_CoA_mut_C methy 42.8 54 0.0012 28.4 5.1 49 293-342 66-114 (132)
165 PF06574 FAD_syn: FAD syntheta 42.1 53 0.0011 29.3 5.1 77 173-261 61-144 (157)
166 PF01012 ETF: Electron transfe 41.3 2.4E+02 0.0052 24.6 9.4 106 130-258 13-118 (164)
167 cd05710 SIS_1 A subgroup of th 41.2 62 0.0013 27.0 5.2 80 72-157 3-82 (120)
168 PF02142 MGS: MGS-like domain 41.2 31 0.00067 27.7 3.2 47 290-340 16-67 (95)
169 KOG1448 Ribose-phosphate pyrop 40.9 1.3E+02 0.0028 30.0 7.9 115 242-364 13-147 (316)
170 PRK08558 adenine phosphoribosy 39.6 3.1E+02 0.0068 26.1 10.3 79 70-152 113-207 (238)
171 PRK03815 murD UDP-N-acetylmura 38.9 2.4E+02 0.0052 29.0 10.1 151 79-250 236-389 (401)
172 cd04814 PA_M28_1 PA_M28_1: Pro 37.7 59 0.0013 28.7 4.7 40 278-317 45-98 (142)
173 TIGR00393 kpsF KpsF/GutQ famil 37.4 1.3E+02 0.0027 28.5 7.3 80 70-155 2-81 (268)
174 COG0784 CheY FOG: CheY-like re 37.1 1.5E+02 0.0032 23.8 6.8 57 279-344 3-62 (130)
175 cd05008 SIS_GlmS_GlmD_1 SIS (S 36.8 1.3E+02 0.0029 24.6 6.6 76 71-152 2-77 (126)
176 PF10662 PduV-EutP: Ethanolami 36.6 52 0.0011 29.2 4.1 40 289-331 100-139 (143)
177 TIGR01809 Shik-DH-AROM shikima 36.5 63 0.0014 31.5 5.2 35 278-316 122-156 (282)
178 cd04820 PA_M28_1_1 PA_M28_1_1: 36.4 66 0.0014 28.3 4.7 39 278-316 47-93 (137)
179 smart00851 MGS MGS-like domain 36.0 48 0.001 26.3 3.5 45 290-341 16-63 (90)
180 PRK08564 5'-methylthioadenosin 35.7 46 0.001 32.5 4.0 79 69-156 8-91 (267)
181 PRK06242 flavodoxin; Provision 35.5 2.8E+02 0.006 23.6 10.5 96 78-196 14-111 (150)
182 cd01518 RHOD_YceA Member of th 35.0 67 0.0015 25.5 4.3 33 280-315 60-92 (101)
183 PRK08105 flavodoxin; Provision 34.7 2.8E+02 0.006 24.2 8.5 111 69-193 2-121 (149)
184 COG3473 Maleate cis-trans isom 34.3 3E+02 0.0066 26.3 8.9 97 140-258 109-208 (238)
185 PRK06388 amidophosphoribosyltr 34.2 2.7E+02 0.006 29.5 9.7 75 78-156 301-391 (474)
186 cd01523 RHOD_Lact_B Member of 33.7 62 0.0013 25.7 3.9 31 280-314 60-90 (100)
187 TIGR01740 pyrF orotidine 5'-ph 33.6 52 0.0011 30.6 3.9 103 234-343 2-112 (213)
188 TIGR01470 cysG_Nterm siroheme 33.2 1.1E+02 0.0024 28.4 6.0 40 278-324 6-45 (205)
189 PRK15482 transcriptional regul 33.1 85 0.0018 30.3 5.4 80 68-153 135-214 (285)
190 PRK12769 putative oxidoreducta 32.2 1.5E+02 0.0032 32.5 7.6 55 279-337 466-524 (654)
191 cd01519 RHOD_HSP67B2 Member of 31.8 76 0.0016 25.2 4.1 34 280-316 65-98 (106)
192 cd01080 NAD_bind_m-THF_DH_Cycl 31.6 2.6E+02 0.0056 25.2 7.9 58 277-344 40-98 (168)
193 PRK13671 hypothetical protein; 31.5 2.3E+02 0.0049 28.2 8.1 68 121-196 4-71 (298)
194 PRK06756 flavodoxin; Provision 31.3 2.6E+02 0.0056 23.9 7.7 109 71-192 4-119 (148)
195 cd01528 RHOD_2 Member of the R 31.2 82 0.0018 25.0 4.2 34 280-316 57-90 (101)
196 PF13399 LytR_C: LytR cell env 31.0 2E+02 0.0043 22.5 6.4 44 69-114 43-87 (90)
197 PRK00676 hemA glutamyl-tRNA re 30.7 94 0.002 31.5 5.3 38 276-317 169-206 (338)
198 PRK09271 flavodoxin; Provision 30.6 3.3E+02 0.0071 23.9 8.4 54 71-125 3-59 (160)
199 PRK05562 precorrin-2 dehydroge 30.5 1.2E+02 0.0026 28.9 5.7 39 278-324 22-61 (223)
200 KOG4203 Armadillo/beta-Catenin 29.6 90 0.002 33.1 5.2 75 235-310 338-415 (473)
201 PRK06031 phosphoribosyltransfe 28.7 3.8E+02 0.0081 25.6 8.9 77 71-151 87-184 (233)
202 COG1184 GCD2 Translation initi 28.7 58 0.0013 32.4 3.4 51 293-343 128-180 (301)
203 PRK05568 flavodoxin; Provision 28.4 3.6E+02 0.0078 22.7 9.6 102 74-192 9-115 (142)
204 cd01480 vWA_collagen_alpha_1-V 27.8 1.4E+02 0.003 26.8 5.5 58 281-340 110-170 (186)
205 COG1922 WecG Teichoic acid bio 27.6 1.8E+02 0.004 28.3 6.5 66 279-347 106-175 (253)
206 COG0287 TyrA Prephenate dehydr 27.5 46 0.001 32.7 2.5 50 293-344 97-146 (279)
207 COG2820 Udp Uridine phosphoryl 27.4 2.7E+02 0.0058 27.0 7.5 97 231-345 18-114 (248)
208 PRK11557 putative DNA-binding 27.4 1.4E+02 0.003 28.5 5.8 82 67-154 127-208 (278)
209 COG1751 Uncharacterized conser 27.3 1.2E+02 0.0025 27.6 4.7 78 292-373 36-123 (186)
210 cd05013 SIS_RpiR RpiR-like pro 27.0 1.4E+02 0.0031 24.3 5.2 82 69-157 14-95 (139)
211 cd04234 AAK_AK AAK_AK: Amino A 26.9 5.2E+02 0.011 24.0 9.8 48 117-191 30-77 (227)
212 TIGR00201 comF comF family pro 26.9 2.6E+02 0.0056 25.3 7.2 38 114-155 149-186 (190)
213 PRK10637 cysG siroheme synthas 26.6 1.3E+02 0.0029 31.4 5.9 40 278-325 9-49 (457)
214 PRK13374 purine nucleoside pho 26.5 4E+02 0.0087 25.1 8.7 83 230-323 14-97 (233)
215 PRK09177 xanthine-guanine phos 26.4 3.2E+02 0.0069 24.2 7.5 59 70-128 33-95 (156)
216 PLN02160 thiosulfate sulfurtra 26.3 98 0.0021 26.6 4.1 34 280-316 80-113 (136)
217 cd01965 Nitrogenase_MoFe_beta_ 26.3 1.2E+02 0.0027 31.1 5.5 38 278-319 296-333 (428)
218 cd01532 4RHOD_Repeat_1 Member 26.1 84 0.0018 24.7 3.4 33 280-315 49-83 (92)
219 COG3947 Response regulator con 25.5 1.1E+02 0.0023 30.8 4.5 54 283-344 2-55 (361)
220 cd01524 RHOD_Pyr_redox Member 25.3 1.2E+02 0.0027 23.5 4.2 31 281-315 51-81 (90)
221 cd01527 RHOD_YgaP Member of th 24.9 99 0.0022 24.3 3.6 33 280-315 53-85 (99)
222 PF14502 HTH_41: Helix-turn-he 24.8 75 0.0016 23.0 2.5 20 293-312 19-38 (48)
223 cd00532 MGS-like MGS-like doma 24.6 1.5E+02 0.0032 24.5 4.8 48 291-342 29-77 (112)
224 PRK11543 gutQ D-arabinose 5-ph 24.6 2.1E+02 0.0045 27.9 6.6 81 68-154 42-122 (321)
225 cd04725 OMP_decarboxylase_like 24.2 62 0.0014 30.2 2.6 105 234-343 2-112 (216)
226 PRK05320 rhodanese superfamily 24.1 1.3E+02 0.0027 29.2 4.8 34 279-315 173-206 (257)
227 cd01525 RHOD_Kc Member of the 24.0 1.3E+02 0.0027 23.9 4.1 32 281-315 65-96 (105)
228 TIGR01744 XPRTase xanthine pho 23.5 4.9E+02 0.011 23.9 8.4 72 75-150 57-146 (191)
229 PRK11337 DNA-binding transcrip 23.2 1.5E+02 0.0032 28.6 5.2 81 68-154 140-220 (292)
230 cd06375 PBP1_mGluR_groupII Lig 23.1 8.4E+02 0.018 25.2 11.2 145 172-323 114-270 (458)
231 PRK09219 xanthine phosphoribos 23.0 4.7E+02 0.01 24.0 8.2 70 77-150 59-146 (189)
232 PRK04537 ATP-dependent RNA hel 23.0 2.5E+02 0.0053 30.4 7.2 59 280-344 256-318 (572)
233 cd02071 MM_CoA_mut_B12_BD meth 22.7 2.1E+02 0.0045 24.0 5.4 49 294-343 64-112 (122)
234 cd01533 4RHOD_Repeat_2 Member 22.7 1.4E+02 0.0031 24.0 4.2 33 280-315 65-98 (109)
235 PF11382 DUF3186: Protein of u 22.4 2.7E+02 0.0058 27.6 6.9 56 275-330 77-133 (308)
236 COG1926 Predicted phosphoribos 22.4 1.8E+02 0.0039 27.6 5.2 64 114-198 121-184 (220)
237 cd01474 vWA_ATR ATR (Anthrax T 22.1 2.5E+02 0.0054 24.9 6.1 59 282-343 105-167 (185)
238 cd05009 SIS_GlmS_GlmD_2 SIS (S 22.1 2.5E+02 0.0054 23.6 5.9 85 68-157 13-97 (153)
239 cd05017 SIS_PGI_PMI_1 The memb 22.0 3.9E+02 0.0084 22.0 6.9 74 71-153 2-75 (119)
240 TIGR02981 phageshock_pspE phag 22.0 1.8E+02 0.0038 23.8 4.6 31 281-314 58-88 (101)
241 PRK02472 murD UDP-N-acetylmura 22.0 4.4E+02 0.0094 26.9 8.6 142 79-243 279-425 (447)
242 PRK00258 aroE shikimate 5-dehy 21.9 1.7E+02 0.0038 28.2 5.3 36 278-317 120-155 (278)
243 PRK13940 glutamyl-tRNA reducta 21.9 1.3E+02 0.0029 31.2 4.7 38 276-317 176-213 (414)
244 PRK07823 5'-methylthioadenosin 21.8 1.5E+02 0.0032 28.9 4.8 79 68-155 5-87 (264)
245 PF12641 Flavodoxin_3: Flavodo 21.5 3.4E+02 0.0073 24.3 6.7 63 80-158 12-76 (160)
246 PRK08373 aspartate kinase; Val 21.5 7.4E+02 0.016 25.1 9.8 32 164-196 102-133 (341)
247 cd01447 Polysulfide_ST Polysul 21.5 91 0.002 24.5 2.8 33 280-315 60-92 (103)
248 TIGR01743 purR_Bsub pur operon 21.4 5.5E+02 0.012 25.1 8.6 71 76-150 136-223 (268)
249 COG1402 Uncharacterized protei 21.4 3.1E+02 0.0067 26.6 6.8 70 130-201 39-117 (250)
250 TIGR01752 flav_long flavodoxin 21.3 5.7E+02 0.012 22.5 9.2 99 79-195 13-119 (167)
251 cd01715 ETF_alpha The electron 21.3 3.1E+02 0.0067 24.1 6.5 67 180-257 44-110 (168)
252 PLN02469 hydroxyacylglutathion 21.2 1.2E+02 0.0026 29.2 4.0 43 275-322 16-58 (258)
253 PRK11382 frlB fructoselysine-6 21.0 2.2E+02 0.0049 28.3 6.1 82 68-154 44-125 (340)
254 PF03612 EIIBC-GUT_N: Sorbitol 20.9 1.5E+02 0.0032 27.4 4.3 45 67-111 23-67 (183)
255 cd04821 PA_M28_1_2 PA_M28_1_2: 20.7 1.8E+02 0.004 26.0 4.8 40 278-317 47-101 (157)
256 cd04822 PA_M28_1_3 PA_M28_1_3: 20.7 1.7E+02 0.0036 26.1 4.5 39 278-316 45-97 (151)
257 PRK02006 murD UDP-N-acetylmura 20.6 4.1E+02 0.0088 27.8 8.2 148 81-250 326-478 (498)
258 PLN02962 hydroxyacylglutathion 20.4 1.8E+02 0.0039 28.0 5.0 41 280-323 34-74 (251)
259 PF02225 PA: PA domain; Inter 20.4 1.7E+02 0.0037 22.9 4.2 36 277-316 30-65 (101)
260 TIGR03127 RuMP_HxlB 6-phospho 20.3 6E+02 0.013 22.4 8.8 76 68-154 30-105 (179)
261 cd01537 PBP1_Repressors_Sugar_ 20.3 6.1E+02 0.013 22.5 12.7 70 180-252 72-144 (264)
262 PRK06703 flavodoxin; Provision 20.2 5.5E+02 0.012 21.9 9.0 109 71-192 4-118 (151)
263 TIGR01564 S_layer_MJ S-layer p 20.2 2.1E+02 0.0044 31.1 5.7 60 63-128 498-557 (571)
264 PF08410 DUF1737: Domain of un 20.1 2.7E+02 0.0059 20.6 4.7 34 71-104 6-41 (54)
265 cd06295 PBP1_CelR Ligand bindi 20.1 6.8E+02 0.015 22.9 13.2 43 208-252 106-151 (275)
266 TIGR01697 PNPH-PUNA-XAPA inosi 20.1 1.9E+02 0.0042 27.5 5.1 66 275-346 44-114 (248)
No 1
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=3e-97 Score=717.59 Aligned_cols=312 Identities=57% Similarity=0.916 Sum_probs=301.4
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhc
Q 016576 68 DTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRA 147 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~ 147 (387)
.++|++|+|++|++||++||++||+++++++.++|||||++|+++|+|||+||||+||+|+|+||+|||||+|+|||||+
T Consensus 2 ~~~~~if~g~s~~~La~~ia~~l~~~l~~~~~~rF~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~a 81 (314)
T COG0462 2 MNNMKIFSGSSNPELAEKIAKRLGIPLGKVEVKRFPDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRA 81 (314)
T ss_pred CCceEEEECCCCHHHHHHHHHHhCCCcccceeEEcCCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcC
Q 016576 148 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAI 227 (387)
Q Consensus 148 ~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~ 227 (387)
||++||+|+||||||||||++++||||+||++|+||+.+|+|+|+|+|||++|+||||++|++||++.|.+++|+.+++
T Consensus 82 sA~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~- 160 (314)
T COG0462 82 SAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKY- 160 (314)
T ss_pred CCceEEEEeecchhhccCcccCCCCCEeHHHHHHHHHHcCCCeEEEEcCCchhhcccCCCccccccchHHHHHHHHHhc-
Confidence 9999999999999999998889999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeec-CCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHH
Q 016576 228 SSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQ-GHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQ 306 (387)
Q Consensus 228 ~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~-~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~ 306 (387)
+.++++||+||.||++||+.+|+.|+ .++++++|+|+ ..+..+.+.+.|||+||+|+||||||+||||+.+|++.||+
T Consensus 161 ~~~d~vVVSPD~Ggv~RAr~~A~~L~-~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~ 239 (314)
T COG0462 161 DLDDPVVVSPDKGGVKRARALADRLG-APLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKE 239 (314)
T ss_pred CCCCcEEECCCccHHHHHHHHHHHhC-CCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHH
Confidence 55679999999999999999999996 89999999995 78888888999999999999999999999999999999999
Q ss_pred cCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCcccCCCCCceEEehHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 016576 307 EGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 386 (387)
Q Consensus 307 ~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~~ 386 (387)
+||++|+++||||+|+++|.++++++.+++|++|||||+++.+.++|++++||+++|||+|+|+|+++| +|.||.
T Consensus 240 ~GAk~V~a~~tH~vfs~~a~~~l~~~~i~~vivTnTi~~~~~~~~~~~~~isva~liaeaI~ri~~~~s-----vs~lf~ 314 (314)
T COG0462 240 RGAKKVYAAATHGVFSGAALERLEASAIDEVIVTDTIPLPEKKKIPKVSVISVAPLIAEAIRRIHNGES-----VSSLFD 314 (314)
T ss_pred CCCCeEEEEEEchhhChHHHHHHhcCCCCEEEEeCCcccccccccCceEEEEhHHHHHHHHHHHHcCCC-----hhHhhC
Confidence 999999999999999999999999988999999999999855678899999999999999999999999 999984
No 2
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.8e-86 Score=652.20 Aligned_cols=314 Identities=52% Similarity=0.821 Sum_probs=297.4
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhc
Q 016576 68 DTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRA 147 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~ 147 (387)
.++|+||+|++|++||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+||++||||++++|||++
T Consensus 4 ~~~~~i~~g~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~ 83 (319)
T PRK04923 4 QRNLLVFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRA 83 (319)
T ss_pred CCceEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCccccchhhcc-CCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhc
Q 016576 148 SAKNITAVIPYFGYARADRKTQ-GRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKA 226 (387)
Q Consensus 148 ~a~~it~viPY~~YsRqDr~~~-~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~ 226 (387)
||++||+|+|||||+||||++. +|+|+++|.+|+||+.+|+|+|+++|+|++++++||++|++|+++.+++++|+.+..
T Consensus 84 ~a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~ 163 (319)
T PRK04923 84 SAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISAMGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAY 163 (319)
T ss_pred CCcEEEEEeeccccccccccccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCceeeeChHHHHHHHHHhc
Confidence 9999999999999999999995 578999999999999999999999999999999999999999999999999997642
Q ss_pred CCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHH
Q 016576 227 ISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQ 306 (387)
Q Consensus 227 ~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~ 306 (387)
+.++++||+||.||++||+.+|+.|+++++++++|+|...+..+.+.+.|+++||+|||||||+|||+|+.++++.||+
T Consensus 164 -~~~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~ 242 (319)
T PRK04923 164 -GTDNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQ 242 (319)
T ss_pred -CCCCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCchHHHHHHHHHHHH
Confidence 3468899999999999999999999547999999999766655566778999999999999999999999999999999
Q ss_pred cCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCccc-CCCCCceEEehHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 016576 307 EGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLG 385 (387)
Q Consensus 307 ~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~-~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~ 385 (387)
+||++|+++||||+|+++|.++|.++++++|++|||||++++ +.++|++++||+++||++|+++|+++| +|++|
T Consensus 243 ~GA~~V~~~~THgvfs~~a~~~l~~s~i~~iv~Tdtip~~~~~~~~~k~~~isva~lla~~i~~~~~~~s-----~~~l~ 317 (319)
T PRK04923 243 RGALKVVAYITHPVLSGPAVDNINNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRIAFGES-----VSSLY 317 (319)
T ss_pred CCCCEEEEEEECcccCchHHHHHhhCCCCEEEEeCCccCchhhcccCCeEEEEhHHHHHHHHHHHHcCCC-----HHHhc
Confidence 999999999999999999999999999999999999999765 457899999999999999999999999 99999
Q ss_pred CC
Q 016576 386 ID 387 (387)
Q Consensus 386 ~~ 387 (387)
+|
T Consensus 318 ~~ 319 (319)
T PRK04923 318 VD 319 (319)
T ss_pred CC
Confidence 97
No 3
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.7e-85 Score=647.80 Aligned_cols=312 Identities=47% Similarity=0.833 Sum_probs=296.2
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcC
Q 016576 69 TRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRAS 148 (387)
Q Consensus 69 ~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~ 148 (387)
++|+||+|++|+.||++||++||++++++++++|||||++|++.++|||+|||||||++.|+||++||||++++|||++|
T Consensus 4 ~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~ 83 (320)
T PRK02269 4 SDLKLFALSSNKELAEKVAQEIGIELGKSSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRAS 83 (320)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCC
Q 016576 149 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAIS 228 (387)
Q Consensus 149 a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~ 228 (387)
|++||+|+|||||+||||++++|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++|+++.|++++|+.+..++
T Consensus 84 a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~~g~d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~ 163 (320)
T PRK02269 84 AESINVVMPYYGYARQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLV 163 (320)
T ss_pred CCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhhcCCCEEEEECCChHHHhccccCCchhhhhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876555
Q ss_pred CCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecC--CCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHH
Q 016576 229 SDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQG--HNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQ 306 (387)
Q Consensus 229 ~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~--~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~ 306 (387)
.++++||+||.||++||+.+|+.|+ .|+.+++|+|.. .+..+.+.+.|+++||+|||||||+|||+|+.++++.|++
T Consensus 164 ~~~~vvVsPd~G~~~~A~~lA~~lg-~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~ 242 (320)
T PRK02269 164 GDDVVVVSPDHGGVTRARKLAQFLK-TPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAE 242 (320)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhC-CCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHHHHHHHHHHHH
Confidence 6789999999999999999999996 999999998863 2444455778999999999999999999999999999999
Q ss_pred cCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCcccCCCCCceEEehHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 016576 307 EGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 386 (387)
Q Consensus 307 ~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~~ 386 (387)
+||++|+++||||+|+++|.++|.++++++|++|||||++++..++|++++||+++|||+|+++|+++| ++.+|.
T Consensus 243 ~GA~~V~~~~tHglf~~~a~~~l~~~~i~~iv~Tdti~~~~~~~~~k~~~isva~~la~~i~~~~~~~s-----~~~~~~ 317 (320)
T PRK02269 243 AGATEVYASCTHPVLSGPALDNIQKSAIEKLVVLDTIYLPEERLIDKIEQISIADLLGEAIIRIHEKRP-----LSPLFE 317 (320)
T ss_pred CCCCEEEEEEECcccCchHHHHHHhCCCCEEEEeCCCCCccccccCCeEEEEhHHHHHHHHHHHHcCCC-----HHHHhc
Confidence 999999999999999999999999999999999999998766567899999999999999999999999 998884
No 4
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=4.5e-85 Score=646.76 Aligned_cols=314 Identities=44% Similarity=0.709 Sum_probs=297.9
Q ss_pred CCCCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHH
Q 016576 66 KNDTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACR 145 (387)
Q Consensus 66 ~~~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r 145 (387)
..+++++||+|++|+.||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+||++||||++++|||
T Consensus 5 ~~~~~~~i~~~~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr 84 (332)
T PRK00553 5 IDKSNHVIFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALK 84 (332)
T ss_pred cCCCCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhh
Q 016576 146 RASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASK 225 (387)
Q Consensus 146 ~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~ 225 (387)
++||++||+|+|||||+||||++.+|||+++|++|+||+.+|+|+|+++|+|++++++||++|++|+++.+++++|+.+.
T Consensus 85 ~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~~g~d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~~~~ 164 (332)
T PRK00553 85 RGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLEL 164 (332)
T ss_pred HcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCcceeechHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHH
Q 016576 226 AISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLH 305 (387)
Q Consensus 226 ~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk 305 (387)
.+.++++||+||.||++||+.+|+.++ .++++++|+|...+..+.+.+.|+++||+|||||||+|||+|+.++++.|+
T Consensus 165 -~~~~~~vvVsPD~gg~~rA~~lA~~lg-~~~~vi~K~r~~~~~~~~~~~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk 242 (332)
T PRK00553 165 -LGKKDLVVVSPDYGGVKRARLIAESLE-LPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLK 242 (332)
T ss_pred -cCCCCeEEEEECCCcHHHHHHHHHHhC-CCEEEEEEecCCcceEeeEEeeccCCCCEEEEEeccccchHHHHHHHHHHH
Confidence 245788999999999999999999996 999999999987766666677899999999999999999999999999999
Q ss_pred HcCCcEEEEEEEcccCChhHHHHHhcC----CCCEEEEeCCCCCcccCCCCCceEEehHHHHHHHHHHHHcCCCCCCCCC
Q 016576 306 QEGAREVYACSTHAVFSPPAIERLSSG----LFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPY 381 (387)
Q Consensus 306 ~~GA~~V~v~~tHgvfs~~A~e~L~~s----~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~ 381 (387)
++||++|+++||||+|+++|.++|.++ ++++|++|||+|+++...++|++++|++++||++|+++|+++| +
T Consensus 243 ~~GA~~V~~~atHglf~~~a~~~l~~~~~~~~i~~iv~Tntip~~~~~~~~~~~~vsva~~la~~i~~~~~~~s-----~ 317 (332)
T PRK00553 243 KQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNSIPQTKFEKKPQFKVVDLAHLYEEVLLCYANGGS-----I 317 (332)
T ss_pred HcCCcEEEEEEEeeecCchHHHHHHhccccCCCCEEEEeCCccCcccccCCCeEEEEhHHHHHHHHHHHhcCCC-----H
Confidence 999999999999999999999999654 8999999999998765557899999999999999999999999 9
Q ss_pred CCCCC
Q 016576 382 SSLGI 386 (387)
Q Consensus 382 ~~~~~ 386 (387)
|++|.
T Consensus 318 ~~~~~ 322 (332)
T PRK00553 318 SAIYT 322 (332)
T ss_pred HHHHh
Confidence 99885
No 5
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=1.3e-84 Score=657.01 Aligned_cols=312 Identities=47% Similarity=0.761 Sum_probs=296.7
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhc
Q 016576 68 DTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRA 147 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~ 147 (387)
.++|+||+|++|+.||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+||+|||||+|++|||++
T Consensus 117 ~~~m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDGE~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~a 196 (439)
T PTZ00145 117 MENAILFSGSSNPLLSKNIADHLGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRA 196 (439)
T ss_pred cCCeEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHh
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccC--cccccccchHHHHHHHHhh
Q 016576 148 SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFD--IPVDHVYGQPVILDYLASK 225 (387)
Q Consensus 148 ~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~--ipvd~L~a~~~la~~L~~~ 225 (387)
||++||+|+|||||+||||++.+|||+++|++|+||+++|+|+|++||+|+.++++||+ +|++|+.+.+.+++|+.+.
T Consensus 197 gAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~~fF~~~iPvdnl~a~~~~a~~i~~~ 276 (439)
T PTZ00145 197 SAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDYFTKK 276 (439)
T ss_pred ccCeEEEEeecccchheecccCCCCChhHHHHHHHHHHcCCCeEEEEecChHHHHhhcCCCcccccccccHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999996 8999999999999999764
Q ss_pred cCCCCCeEEEecCCCchHHHHHHHHHcC-----CCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHH
Q 016576 226 AISSDDLVVVSPDVGGVARARAFAKKLS-----DAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKG 300 (387)
Q Consensus 226 ~~~~~~~vVVspd~Ggv~rA~~lA~~L~-----~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~a 300 (387)
+..+++||+||.||++||+.+|+.|+ ++++++++|+|...+..+.+.+.|||+||+|||||||||||+|+.+|
T Consensus 277 --~l~~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~a 354 (439)
T PTZ00145 277 --DLYKPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMIDTSGTLCEA 354 (439)
T ss_pred --CCCccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceEEEeccCCCCCCEEEEEcceeCcHHHHHHH
Confidence 34678999999999999999999995 26899999999877766667788999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCccc-CCCCCceEEehHHHHHHHHHHHHcCCCCCCC
Q 016576 301 AALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWRVHDDCSDGYE 379 (387)
Q Consensus 301 a~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~-~~~~kl~vlsva~lla~~I~~~~~~~s~~~~ 379 (387)
++.|+++||++|+++||||+|+++|.++|.++++++||+|||||++++ +.++|++++||+++||++|+++|+++|
T Consensus 355 a~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~IvvTdTIp~~~~~~~~~k~~visVA~llAeaI~~i~~~~s---- 430 (439)
T PTZ00145 355 AKQLKKHGARRVFAFATHGLFSGPAIERIEASPLEEVVVTDTVKSNKNIDSCKKITKLSVSVLVADAIRRIHQKES---- 430 (439)
T ss_pred HHHHHHcCCCEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCcCchhhcccCCeEEEEhHHHHHHHHHHHhcCCC----
Confidence 999999999999999999999999999999999999999999999765 457899999999999999999999999
Q ss_pred CCCCCCC
Q 016576 380 PYSSLGI 386 (387)
Q Consensus 380 ~~~~~~~ 386 (387)
+|.+|.
T Consensus 431 -~s~lf~ 436 (439)
T PTZ00145 431 -LNDLFN 436 (439)
T ss_pred -HHHHhC
Confidence 998884
No 6
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-85 Score=624.27 Aligned_cols=312 Identities=47% Similarity=0.813 Sum_probs=299.4
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcC
Q 016576 69 TRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRAS 148 (387)
Q Consensus 69 ~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~ 148 (387)
++++||+|++||+||++||++||++++++.+++|+|||++|++.++|||+|||++||.|.|.||+|||||+||+|||+++
T Consensus 2 ~~i~lf~g~shp~La~~I~~~lgi~l~~v~~kkf~nge~~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~~as 81 (316)
T KOG1448|consen 2 KNIKLFSGDSHPELAERIAARLGIELGKVNLKKFSNGETSVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACKRAS 81 (316)
T ss_pred CceEEEcCCCCHHHHHHHHHHhCCCcceeeeEEccCCcEEEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcchhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCC
Q 016576 149 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAIS 228 (387)
Q Consensus 149 a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~ 228 (387)
|++||+|||||||+||||+.+.+.+++||++|+||..+|+|+||++|+|..|.+|||++|+||+++.|.+.+|+++...+
T Consensus 82 a~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls~aG~dhvItmDlHa~Q~qgfF~ipVdnly~~p~~l~~ir~~~~~ 161 (316)
T KOG1448|consen 82 ASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSSAGADHVITMDLHASQIQGFFDIPVDNLYAEPAVLNYIRENIPD 161 (316)
T ss_pred hheeEEeccCCccccchhhhhhhhhHHHHHHHhhhhccCCceEEEecccchhhCceeeccchhhccchHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred CCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeE-EEeeecCCCCCEEEEEecccCchHHHHHHHHHHHHc
Q 016576 229 SDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAE-VMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQE 307 (387)
Q Consensus 229 ~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e-~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~ 307 (387)
+++.++|+||.||.+|+..+|++|+ ..++.++|.|+..+... .+.++|||+||.+||||||++|+||+.+|++.|+++
T Consensus 162 ~~~~vivSPdaGgaKR~~s~ad~l~-~~fali~ker~k~~~v~~~m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~ 240 (316)
T KOG1448|consen 162 SENAVIVSPDAGGAKRVTSLADRLN-LDFALIHKERRKANEVDIRMVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEH 240 (316)
T ss_pred ccceEEECCCcchhhhhHHHHHhhc-chhhhhhhhhhcccccceEEEEEeccCCcEEEEecccccccchHHHHHHHHHhc
Confidence 9999999999999999999999996 78888888876655544 678999999999999999999999999999999999
Q ss_pred CCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCcccCCCCCceEEehHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 016576 308 GAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 386 (387)
Q Consensus 308 GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~~ 386 (387)
||++||+++|||+|+++|+||+.++.++++++|||+|+.+....||+.++++++.+||+|+|.|+|+| +|.+|.
T Consensus 241 GA~kV~a~~THgVfs~~a~er~~~s~~~~~vvtnt~p~~~~~~~~~~~~Idvs~~~ae~irr~h~ges-----vS~lf~ 314 (316)
T KOG1448|consen 241 GAKKVYAIVTHGVFSGPAIERLNESALDRVVVTNTIPIDDSCLEPKLTTIDVSPVLAEAIRRTHNGES-----VSYLFS 314 (316)
T ss_pred CCceEEEEEcceeccccHHHHhhhcccceEEEEEeecccccccCCcccEEeeccccchheEEecCCee-----eeeecc
Confidence 99999999999999999999999999999999999999876556899999999999999999999999 999985
No 7
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.4e-83 Score=634.31 Aligned_cols=313 Identities=40% Similarity=0.708 Sum_probs=294.5
Q ss_pred CCCCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHH
Q 016576 66 KNDTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACR 145 (387)
Q Consensus 66 ~~~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r 145 (387)
..+++|+||+|++|++||++||+.||++++++++++|||||+++++.++|||+|||||||++.|+||+|||||+|++|||
T Consensus 5 ~~~~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr 84 (323)
T PRK02458 5 YADKQIKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACK 84 (323)
T ss_pred cCCCCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhh
Q 016576 146 RASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASK 225 (387)
Q Consensus 146 ~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~ 225 (387)
++||++|++|+|||||+||||++++|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++|+++.|++++|+.+.
T Consensus 85 ~~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~i~~~F~~p~~nl~~~p~~~~~l~~~ 164 (323)
T PRK02458 85 RASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKK 164 (323)
T ss_pred HcCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHhhcCCCeEEEEecCcHHhhccccCCceEEEEHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred cCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHH
Q 016576 226 AISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLH 305 (387)
Q Consensus 226 ~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk 305 (387)
.++.++++||+||.||++||+.+++.|+ .++.+++|+|..... +...+.|+|+||+|||||||+|||+|+.++++.|+
T Consensus 165 ~~~~~~~vvV~pd~Ga~~~A~~la~~L~-~~~~~~~~~r~~~~~-~~~~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk 242 (323)
T PRK02458 165 GLSGSDVVVVSPKNSGIKRARSLAEYLD-APIAIIDYAQDDSER-EEGYIIGDVAGKKAILIDDILNTGKTFAEAAKIVE 242 (323)
T ss_pred CCCCCceEEEEECCChHHHHHHHHHHhC-CCEEEEEEecCCCcc-eeeccccccCCCEEEEEcceeCcHHHHHHHHHHHH
Confidence 4555789999999999999999999996 999999987754332 22356789999999999999999999999999999
Q ss_pred HcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCcccCCCCCceEEehHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 016576 306 QEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLG 385 (387)
Q Consensus 306 ~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~ 385 (387)
++||++|+++||||+|+++|.++|.++++++|++|||||+++ +.++|++++|++++||++|+++|+++| +|++|
T Consensus 243 ~~GA~~V~~~~tHgif~~~a~~~l~~s~i~~iv~TdTi~~~~-~~~~k~~~isva~lla~~i~~~~~~~s-----~~~~~ 316 (323)
T PRK02458 243 REGATEIYAVASHGLFAGGAAEVLENAPIKEILVTDSVATKE-RVPKNVTYLSASELIADAIIRIHERKP-----LSPLF 316 (323)
T ss_pred hCCCCcEEEEEEChhcCchHHHHHhhCCCCEEEEECCcCCch-hcCCCcEEEEhHHHHHHHHHHHHcCCC-----HHHHh
Confidence 999999999999999999999999999999999999999853 346799999999999999999999999 99988
Q ss_pred C
Q 016576 386 I 386 (387)
Q Consensus 386 ~ 386 (387)
+
T Consensus 317 ~ 317 (323)
T PRK02458 317 A 317 (323)
T ss_pred C
Confidence 5
No 8
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=6.7e-83 Score=630.49 Aligned_cols=314 Identities=73% Similarity=1.191 Sum_probs=298.1
Q ss_pred CCCCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHH
Q 016576 66 KNDTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACR 145 (387)
Q Consensus 66 ~~~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r 145 (387)
...++|+||+|++|+.||++||++||++++++++++|||||++|++.++|||+|||||||++.|+||++||||+|++|||
T Consensus 17 ~~~~~~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~FpDGE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr 96 (330)
T PRK02812 17 SDNNRLRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACR 96 (330)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHH
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhh
Q 016576 146 RASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASK 225 (387)
Q Consensus 146 ~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~ 225 (387)
++||++||+|+|||||+||||++++|||+++|++|+||+.+|+|+|+++|+|+.++++||++|++|+++.+.+++||.+.
T Consensus 97 ~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ipv~nl~~~~~l~~~i~~~ 176 (330)
T PRK02812 97 RASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLASK 176 (330)
T ss_pred HhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHcCccCCCceeeeChHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred cCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHH
Q 016576 226 AISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLH 305 (387)
Q Consensus 226 ~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk 305 (387)
+.+++++|+||.||.+||+.+|+.|++.++.+++|+|...+..+.+.+.|+++||+||||||+++||+|+.++++.|+
T Consensus 177 --~~~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~ 254 (330)
T PRK02812 177 --NLEDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLR 254 (330)
T ss_pred --CCCCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEccccCcHHHHHHHHHHHh
Confidence 356899999999999999999999955899999999986665555677889999999999999999999999999999
Q ss_pred HcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCcccCCCCCceEEehHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 016576 306 QEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLG 385 (387)
Q Consensus 306 ~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~ 385 (387)
++||++|++++|||+|+++|.++|.++++++|++|||+|++....++|++.++|+++||++|+++|+++| +|.+|
T Consensus 255 ~~Ga~~v~~~~tH~v~s~~a~~~l~~~~id~iv~tnti~~~~~~~~~~~~~~~va~lla~~i~~~~~~~s-----~~~l~ 329 (330)
T PRK02812 255 KEGAKQVYACATHAVFSPPAIERLSSGLFEEVIVTNTIPVPEERRFPQLKVLSVANMLGEAIWRIHEESS-----VSSMF 329 (330)
T ss_pred ccCCCeEEEEEEcccCChHHHHHHhhCCCCEEEEeCCCCChhhcccCCceEEEHHHHHHHHHHHHHcCCC-----HHHhc
Confidence 9999999999999999999999999889999999999998765568999999999999999999999999 99988
Q ss_pred C
Q 016576 386 I 386 (387)
Q Consensus 386 ~ 386 (387)
.
T Consensus 330 ~ 330 (330)
T PRK02812 330 R 330 (330)
T ss_pred C
Confidence 4
No 9
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=8.8e-81 Score=610.29 Aligned_cols=299 Identities=45% Similarity=0.749 Sum_probs=282.4
Q ss_pred HHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEeecCcc
Q 016576 82 LSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGY 161 (387)
Q Consensus 82 La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~viPY~~Y 161 (387)
||++||+.||++++++++++|||||++|++.++|||+|||||||++.|+||++||||++++|||++||++||+|+|||||
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~DGE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~Y 80 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPY 80 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCCCCCeEEEecCCCc
Q 016576 162 ARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGG 241 (387)
Q Consensus 162 sRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~~~~~vVVspd~Gg 241 (387)
+||||++++|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++|+++.+.+++||.+.+ +.+++++|+||.||
T Consensus 81 aRQDr~~~~~e~isak~va~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~~-~~~~~vvVspd~Ga 159 (304)
T PRK03092 81 ARQDKKHRGREPISARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKY-DLDNVTVVSPDAGR 159 (304)
T ss_pred cccccccCCCCCccHHHHHHHHHhcCCCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHhc-CCCCcEEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999997653 45788999999999
Q ss_pred hHHHHHHHHHcCCCCEEEEEEeecCC--CeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc
Q 016576 242 VARARAFAKKLSDAPLAIVDKRRQGH--NVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA 319 (387)
Q Consensus 242 v~rA~~lA~~L~~~~~~~v~K~R~~~--~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 319 (387)
++||+.+++.|+++++.+++|+|+.. +..+...+.|+++||+|||||||++||+|+.++++.|+++||++|+++||||
T Consensus 160 ~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~ 239 (304)
T PRK03092 160 VRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHG 239 (304)
T ss_pred HHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 99999999999548999999999643 3344456789999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHhcCCCCEEEEeCCCCCcccCCCCCceEEehHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 016576 320 VFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 386 (387)
Q Consensus 320 vfs~~A~e~L~~s~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~~ 386 (387)
+|++++.++|.++++++|++|||+|++++..++|++++|++++||++|+++|+++| +|++|.
T Consensus 240 v~~~~a~~~l~~~~~~~i~~t~tip~~~~~~~~~~~~~sva~~la~~i~~~~~~~s-----~~~l~~ 301 (304)
T PRK03092 240 VLSGPAAERLKNCGAREVVVTDTLPIPEEKRFDKLTVLSIAPLLARAIREVFEDGS-----VTSLFD 301 (304)
T ss_pred cCChHHHHHHHHCCCCEEEEeeeeccchhhcCCCeEEEEhHHHHHHHHHHHHcCCC-----HHHHhC
Confidence 99999999999999999999999998765557899999999999999999999999 999885
No 10
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.7e-79 Score=602.68 Aligned_cols=308 Identities=55% Similarity=0.905 Sum_probs=293.4
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCC
Q 016576 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAK 150 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 150 (387)
|+||+|++++.||++||+.||++++++++++|||||+++++.++|||+||||+||++.|+||++|||+++++|||++||+
T Consensus 1 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~ 80 (309)
T PRK01259 1 MKLFAGNANPELAEKIAKYLGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAG 80 (309)
T ss_pred CEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCc
Confidence 58999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred eEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCCCC
Q 016576 151 NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSD 230 (387)
Q Consensus 151 ~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~~~ 230 (387)
+||+|+|||||+||||++++|||+++|.+|+||+.+|+|+|+++|+|+.++++||++|++|+.+.+++++|+.+. +.+
T Consensus 81 ~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~--~~~ 158 (309)
T PRK01259 81 RITAVIPYFGYARQDRKARSRVPITAKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQK--NLE 158 (309)
T ss_pred eEEEEeeccccchhhhhhccCCCchHHHHHHHHhhcCCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999775 356
Q ss_pred CeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCc
Q 016576 231 DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAR 310 (387)
Q Consensus 231 ~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~ 310 (387)
+++||+||.||.+||+.+|+.|+ +++.+++|.|...+..+.+.+.|+++||+|+|||||+|||+|+.++++.|+++||+
T Consensus 159 ~~vvv~pd~Gg~~~A~~la~~Lg-~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~ 237 (309)
T PRK01259 159 NLVVVSPDVGGVVRARALAKRLD-ADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKERGAK 237 (309)
T ss_pred CcEEEEECCCcHHHHHHHHHHhC-CCEEEEEeecccceeEEEEeecccCCCCEEEEEecccCcHHHHHHHHHHHHccCCC
Confidence 88999999999999999999996 99999999987666555556778999999999999999999999999999999999
Q ss_pred EEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCccc-CCCCCceEEehHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 016576 311 EVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSER-NYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 386 (387)
Q Consensus 311 ~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~-~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~~ 386 (387)
+|+++||||+|++++.++|.+++++++++|||+|++.+ ..++|++++|++++||++|+++|+++| ++++|.
T Consensus 238 ~v~~~~tH~i~~~~a~~~l~~~~~~~iv~t~ti~~~~~~~~~~k~~~isva~~ia~~i~~~~~~~s-----~~~l~~ 309 (309)
T PRK01259 238 SVYAYATHPVLSGGAIERIENSVIDELVVTDSIPLSEEAKKCDKIRVLSVAPLLAEAIRRISNEES-----VSSLFD 309 (309)
T ss_pred EEEEEEEeeeCChHHHHHHhcCCCCEEEEecCcccchhhccCCCeEEEEcHHHHHHHHHHHhcCCC-----hHHhcC
Confidence 99999999999999999999889999999999998765 457899999999999999999999999 999874
No 11
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=2.2e-79 Score=599.66 Aligned_cols=292 Identities=28% Similarity=0.444 Sum_probs=273.1
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCC
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 149 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a 149 (387)
.++||+|++|+.||++||+.||++++++++++|||||++|++.++|||+||||+||++.| ||++||||+|++|||++||
T Consensus 2 ~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~F~dGE~~v~i~~~v~g~~V~ivqs~~~~-n~~l~elll~~~alr~~~a 80 (301)
T PRK07199 2 QPLLLALPGNEAAAGRLAAALGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRP-DEKLLPLLFAAEAARELGA 80 (301)
T ss_pred ceEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEECCCCCC-cHHHHHHHHHHHHHHHcCC
Confidence 368999999999999999999999999999999999999999999999999999999888 9999999999999999999
Q ss_pred CeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCc---hhcccccCcccccccchHHHHHHHHhhc
Q 016576 150 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHS---GQSMGYFDIPVDHVYGQPVILDYLASKA 226 (387)
Q Consensus 150 ~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs---~~~~g~F~ipvd~L~a~~~la~~L~~~~ 226 (387)
++||+|+||||||||||++++|||+++|.+|+||+. |+|+|+++|+|+ .++++||++|++|+++.+.+++||.+.
T Consensus 81 ~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~-~~d~vit~DlH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~- 158 (301)
T PRK07199 81 RRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSG-SFDRLVTVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAH- 158 (301)
T ss_pred CeEEEEeecccccccccccCCCCCccHHHHHHHHHh-hcCeEEEEeccchhhHHhcCcccCCccccchHHHHHHHHHhc-
Confidence 999999999999999999999999999999999985 899999999998 678999999999999999999999764
Q ss_pred CCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEee-ecCCCCCEEEEEecccCchHHHHHHHHHHH
Q 016576 227 ISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNL-IGDVKGKVAVMVDDMIDTAGTISKGAALLH 305 (387)
Q Consensus 227 ~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l-~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk 305 (387)
.++++||+||.||.+|++.+++.++ .++.+++|+|.+.+..+.... .++++||+|||||||+|||+|+.++++.||
T Consensus 159 --~~~~vVVsPd~g~~~~a~~la~~l~-~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk 235 (301)
T PRK07199 159 --VPRPLLIGPDEESEQWVAAVAERAG-APHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRTLIEAARQLR 235 (301)
T ss_pred --CCCcEEEEeCCChHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHHHHHHHHHHH
Confidence 3578999999999999999999996 999999999987655443323 357899999999999999999999999999
Q ss_pred HcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCcccCCCCCceEEehHHHHHHHHHHHHcCC
Q 016576 306 QEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDC 374 (387)
Q Consensus 306 ~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla~~I~~~~~~~ 374 (387)
++||++|+++||||+|+++|.++|.++++++|++|||||++. .++||+++||++|+++|++.
T Consensus 236 ~~GA~~V~~~~tHgvfs~~a~~~l~~~~i~~iv~Tdti~~~~-------~~~sva~lla~~i~~~~~~~ 297 (301)
T PRK07199 236 AAGAASPDCVVVHALFAGDAYSALAAAGIARVVSTDTVPHPS-------NAISLAPLLAEALRREFDDP 297 (301)
T ss_pred HCCCcEEEEEEEeeeCChHHHHHHHhCCCCEEEEeCCccCCC-------CEEehHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999862 37999999999999999863
No 12
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=1.9e-79 Score=614.28 Aligned_cols=310 Identities=27% Similarity=0.433 Sum_probs=284.8
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHh--------------------C--CceeceEEeecCCCcEEEEeCCCcCCceEEEEec
Q 016576 68 DTRLRIFSGTANPALSQEISCYM--------------------G--LDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQP 125 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~~ia~~l--------------------g--~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs 125 (387)
.++|+||+|++|++||++||++| | ++++++++++|||||++|++.++|||+|||||||
T Consensus 6 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~vri~~~Vrg~dV~ivqs 85 (382)
T PRK06827 6 VGSLGIIALPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAKGEILESVRGKDIYILQD 85 (382)
T ss_pred CCceEEEECCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEEEEECCCCCCCeEEEEec
Confidence 45699999999999999999999 6 4599999999999999999999999999999999
Q ss_pred CCC--------------CChhhHHHHHHHHHHHHhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEE
Q 016576 126 SCP--------------PANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRV 191 (387)
Q Consensus 126 ~~~--------------~~nd~lmeLll~i~a~r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~V 191 (387)
++. |+||+|||||+|+|||| +||++||+|+|||||+||||+ .+|||+++|++|+||+.+|+|+|
T Consensus 86 ~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr~-~~~e~itak~vA~lL~~~G~d~v 163 (382)
T PRK06827 86 VGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHKR-KGRESLDCALALQELEELGVDNI 163 (382)
T ss_pred CCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeecccccccccc-cCCCCccHHHHHHHHHHcCCCeE
Confidence 974 88999999999999999 999999999999999999999 79999999999999999999999
Q ss_pred EEecCCchhcccccC-cccccccchHHHHHHHHhhc--C--CCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecC
Q 016576 192 LACDLHSGQSMGYFD-IPVDHVYGQPVILDYLASKA--I--SSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQG 266 (387)
Q Consensus 192 itvDlHs~~~~g~F~-ipvd~L~a~~~la~~L~~~~--~--~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~ 266 (387)
+++|+|+.++++||+ .|++|+++.+.+++|+.+.. + +.++++||+||.||++||+.+|+.|+ .++++++|+|..
T Consensus 164 itvDlHs~~i~~~F~~~pvdnl~a~~~l~~~i~~~i~~l~~d~~~~VVVsPD~Gg~~rA~~~A~~Lg-~~~ai~~K~R~~ 242 (382)
T PRK06827 164 ITFDAHDPRIENAIPLMGFENLYPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASVLG-VDLGLFYKRRDY 242 (382)
T ss_pred EEecCChHHhcccCCCCCcCCcCchHHHHHHHHHhcccccccCCCcEEEEECccchHHHHHHHHHhC-CCEEEEEcccCC
Confidence 999999999999998 48999999999999997542 1 23688999999999999999999996 999999999964
Q ss_pred CCee------EEEeeec-CCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhc----CCCC
Q 016576 267 HNVA------EVMNLIG-DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS----GLFQ 335 (387)
Q Consensus 267 ~~~~------e~~~l~g-dV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~----s~i~ 335 (387)
.+.. ..+...| +++||+|||||||+|||+|+.++++.|+++||++|+++||||+|+ +|+++|.+ ++++
T Consensus 243 ~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~ 321 (382)
T PRK06827 243 SRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFD 321 (382)
T ss_pred cccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCC
Confidence 3221 2345678 899999999999999999999999999999999999999999999 99999965 3699
Q ss_pred EEEEeCCCCCccc-CCCCCceEEehHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 016576 336 EVIITNTIPVSER-NYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 386 (387)
Q Consensus 336 ~IvvTnTi~~~~~-~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~~ 386 (387)
+|++|||||++++ +.++|++++||+++||++|+++|+++| +|++|.
T Consensus 322 ~iv~TdTi~~~~~~~~~~~~~~isva~llA~~I~~~~~~~s-----~s~l~~ 368 (382)
T PRK06827 322 RIIGTNLVYHPEELLSKPWYIEVDMSKLIARIIDALNHDVS-----LSKLLD 368 (382)
T ss_pred EEEEeCCCcCchhhcccCCeEEEEcHHHHHHHHHHHHcCCC-----HHHHhC
Confidence 9999999999765 356899999999999999999999999 999885
No 13
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=5.8e-79 Score=596.96 Aligned_cols=302 Identities=93% Similarity=1.380 Sum_probs=286.0
Q ss_pred HHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q 016576 80 PALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYF 159 (387)
Q Consensus 80 ~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~viPY~ 159 (387)
++||++||++||++++++++++|||||+++++.++|||+|||||||+++|+||+|||||++++|||++||++||+|+|||
T Consensus 1 ~~lA~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl 80 (302)
T PLN02369 1 PALSQEIACYLGLELGKITIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYF 80 (302)
T ss_pred ChHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCCCCCeEEEecCC
Q 016576 160 GYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDV 239 (387)
Q Consensus 160 ~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~~~~~vVVspd~ 239 (387)
||+||||++.+|||+++|.+|+||+.+|+|+|+++|+|++++++||++|++|+++.+.+++||.+.....+++++|+||.
T Consensus 81 ~YsRQDr~~~~~e~isak~va~lL~~~g~d~vi~vDlHs~~i~~~F~ip~~~l~~~~~~~~~i~~~~~~~~~~vvVspd~ 160 (302)
T PLN02369 81 GYARADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVSPDV 160 (302)
T ss_pred cccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHhhccCCceecccchHHHHHHHHHhCCCCCceEEEEECc
Confidence 99999999999999999999999999999999999999999999999999999999999999977533346789999999
Q ss_pred CchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc
Q 016576 240 GGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA 319 (387)
Q Consensus 240 Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 319 (387)
||++||+.+++.++++++.+++|+|++.+..+.+.+.|+++||+|||||||++||+|+.++++.|++.||++|++++|||
T Consensus 161 gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~ 240 (302)
T PLN02369 161 GGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHA 240 (302)
T ss_pred ChHHHHHHHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEee
Confidence 99999999999995589999999998766655566789999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHhcCCCCEEEEeCCCCCcccCCCCCceEEehHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 016576 320 VFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 386 (387)
Q Consensus 320 vfs~~A~e~L~~s~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~~ 386 (387)
+|++++.++|.++++++|++|||+|++....++|++++|++++||++|+++|+++| ++++|.
T Consensus 241 v~~~~a~~~l~~~~~~~iv~t~ti~~~~~~~~~~~~~~~v~~~la~~i~~~~~~~s-----~~~~~~ 302 (302)
T PLN02369 241 VFSPPAIERLSSGLFQEVIVTNTIPVSEKNYFPQLTVLSVANLLGETIWRVHDDCS-----VSSIFD 302 (302)
T ss_pred eeCHHHHHHHHhCCCCEEEEeCCCCChhhcccCCceEEEHHHHHHHHHHHHhcCCC-----hHHhcC
Confidence 99999999999989999999999998765567899999999999999999999999 998874
No 14
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=1.8e-76 Score=581.94 Aligned_cols=299 Identities=25% Similarity=0.392 Sum_probs=271.2
Q ss_pred cccCCCCcEEEEeCCCCHHHHHHHHHHh-CCceeceEEeecCCCcEEEEe--CCCcCCceEEEEecCCCCChhhHHHHHH
Q 016576 63 TMIKNDTRLRIFSGTANPALSQEISCYM-GLDLGKIKIKRFADGEIYVQL--QESVRGCHVFLVQPSCPPANENIMELLV 139 (387)
Q Consensus 63 ~~~~~~~~~~ifsg~~~~~La~~ia~~l-g~~l~~~~~~~F~DGE~~v~i--~~~vrg~dV~iiqs~~~~~nd~lmeLll 139 (387)
+..++.++|+||+|++|+.||++||+.| |++++++++++|||||.++++ +++|||+|||||||++.| |+|||||+
T Consensus 9 ~~~~~~~~~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p--d~lmELLl 86 (326)
T PLN02297 9 SSKKNKKQVHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP--AVIFEQLS 86 (326)
T ss_pred cccccCCCeEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC--hHHHHHHH
Confidence 4556678899999999999999999996 899999999999999655554 699999999999999876 78999999
Q ss_pred HHHHHHhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHH-----hCCCEEEEecCCchhcccccCcccccc--
Q 016576 140 MIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITE-----AGANRVLACDLHSGQSMGYFDIPVDHV-- 212 (387)
Q Consensus 140 ~i~a~r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~-----~G~d~VitvDlHs~~~~g~F~ipvd~L-- 212 (387)
|++|||++||++||+|+|||||+||||++++|||+++|.+|+||+. +|+|+|++||+|+.++++||++|++++
T Consensus 87 ~~dAlr~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l 166 (326)
T PLN02297 87 VIYALPKLFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFE 166 (326)
T ss_pred HHHHHHHcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCCccCCcccchhh
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999998866
Q ss_pred cchHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccC
Q 016576 213 YGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMID 292 (387)
Q Consensus 213 ~a~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIId 292 (387)
++.|.+++|+.+.. +.++++||+||.||.+|+..++ + +.++++++|+|.+... ......|+++||+|+|||||+|
T Consensus 167 ~a~~~l~~~i~~~~-~~~~~vvVsPD~Ga~~ra~~~a--~-~~~~~~~~K~R~g~~~-~~~~~~~dv~gr~vlIVDDIid 241 (326)
T PLN02297 167 SGIPLLKKRLQQLP-DSDNIVIAFPDDGAWKRFHKQF--E-HFPMVVCTKVREGDKR-IVRIKEGNPAGRHVVIVDDLVQ 241 (326)
T ss_pred ccHHHHHHHHHhcc-ccCCcEEEecCccHHHHHHHHc--C-CCCEEEEEeEECCCce-EEEecccccCCCeEEEEecccC
Confidence 89999999997531 2468899999999999988877 4 4899999999975432 2345678999999999999999
Q ss_pred chHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhc------CCCCEEEEeCCCCCccc--CCCCCceEEehHHHHH
Q 016576 293 TAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS------GLFQEVIITNTIPVSER--NYFPQLTILSVANLLG 364 (387)
Q Consensus 293 TG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~------s~i~~IvvTnTi~~~~~--~~~~kl~vlsva~lla 364 (387)
||+|+.++++.|+++||++|+++||||+|+++|.++|.+ +++++|++|||||+++. ..++|++++|++++||
T Consensus 242 TG~Tl~~aa~~L~~~Ga~~V~~~~THglfs~~a~~~l~~~~~~~~~~i~~iv~TdTip~~~~~~~~~~k~~~isva~llA 321 (326)
T PLN02297 242 SGGTLIECQKVLAAHGAAKVSAYVTHGVFPNESWERFTHDNGGPEAGFAYFWITDSCPQTVKAVRGKAPFEVLSLAGSIA 321 (326)
T ss_pred cHHHHHHHHHHHHHCCCcEEEEEEECcccChhHHHHHHhcccccccCcCEEEEcCCccCChhhcccCCCcEEEEcHHHHH
Confidence 999999999999999999999999999999999999986 48999999999998755 3468999999999999
Q ss_pred HHHH
Q 016576 365 ETIW 368 (387)
Q Consensus 365 ~~I~ 368 (387)
++|.
T Consensus 322 e~i~ 325 (326)
T PLN02297 322 DALQ 325 (326)
T ss_pred HHhc
Confidence 9984
No 15
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=5.1e-76 Score=578.26 Aligned_cols=306 Identities=56% Similarity=0.889 Sum_probs=290.1
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEE-ecCCCCChhhHHHHHHHHHHHHhcCC
Q 016576 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLV-QPSCPPANENIMELLVMIDACRRASA 149 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~ii-qs~~~~~nd~lmeLll~i~a~r~~~a 149 (387)
|+||+|++|+.||++||+.||++++++++++|||||++|++.++|||+||||+ ||+++|+||++|||+++++|||++||
T Consensus 1 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga 80 (308)
T TIGR01251 1 MKIFSGSSNQELAQKVAKNLGLPLGDVEVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASA 80 (308)
T ss_pred CEEEECCCCHHHHHHHHHHhCCeeeeeEEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999999999999999999999999 99998899999999999999999999
Q ss_pred CeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCCC
Q 016576 150 KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISS 229 (387)
Q Consensus 150 ~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~~ 229 (387)
++||+|+|||||+||||++++|||+++|.+|+||+.+|+|+++++|+|+.++++||++|++++++.+.+++|+.+.. .
T Consensus 81 ~~i~~v~PYl~Y~RqDr~~~~ge~is~~~~a~ll~~~g~d~vit~DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~~~--~ 158 (308)
T TIGR01251 81 KSITAVIPYYGYARQDKKFKSREPISAKLVANLLETAGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKI--L 158 (308)
T ss_pred CeEEEEEEecccchhccccCCCCCchHHHHHHHHHHcCCCEEEEecCChHHhcCcCCCceecccCHHHHHHHHHhhC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998763 4
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeec-CCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHHcC
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQ-GHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEG 308 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~-~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~G 308 (387)
+++++|+||.||.+||..+|+.|+ +|+.+++|+|. ..+......+.|+++||+|+|||||++||+|+.++++.|+++|
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg-~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~Tl~~a~~~l~~~g 237 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALG-CPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAG 237 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhC-CCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHHHHHHHHHHHHhcC
Confidence 678999999999999999999996 99999999997 4444444566789999999999999999999999999999999
Q ss_pred CcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCcccCCCCCceEEehHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 016576 309 AREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIWRVHDDCSDGYEPYSSLGI 386 (387)
Q Consensus 309 A~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~~ 386 (387)
|++|++++|||+|++++.++|.++++++|++|||+|++ +.++|+..+|++++||++|+++|+++| ++.+|.
T Consensus 238 a~~v~~~~th~v~~~~a~~~l~~~~~~~iv~tdt~~~~--~~~~~~~~v~va~~la~~i~~~~~~~s-----~~~~~~ 308 (308)
T TIGR01251 238 AKRVIAAATHGVFSGPAIERIANAGVEEVIVTNTIPHE--KHKPKVSVISVAPLIAEAIRRIHNNES-----VSSLFD 308 (308)
T ss_pred CCEEEEEEEeeecCcHHHHHHHhCCCCEEEEeCCCCcc--ccCCCcEEEEhHHHHHHHHHHHhcCCC-----hHHhcC
Confidence 99999999999999999999999899999999999985 467899999999999999999999999 988873
No 16
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.5e-74 Score=562.22 Aligned_cols=284 Identities=33% Similarity=0.587 Sum_probs=265.8
Q ss_pred EEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCe
Q 016576 72 RIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKN 151 (387)
Q Consensus 72 ~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~ 151 (387)
+||+|++|+.||++||+.||++++++++++|||||++|++.++|||+||||+|++ .|+||+|||||+|++|||++||++
T Consensus 1 ~i~~~~~~~~la~~ia~~l~~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~i~~~~-~~~~d~l~ell~~~~alr~~ga~~ 79 (285)
T PRK00934 1 MIIGGSASQLLASEVARLLNTELALVETKRFPDGELYVRILGEIDGEDVVIISTT-YPQDENLVELLLLIDALRDEGAKS 79 (285)
T ss_pred CeEeCCCCHHHHHHHHHHHCCceEeeEEEECCCCCEEEEECCCcCCCEEEEEeCC-CCCcHHHHHHHHHHHHHHHcCCCe
Confidence 4899999999999999999999999999999999999999999999999999996 467999999999999999999999
Q ss_pred EEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCCCCC
Q 016576 152 ITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDD 231 (387)
Q Consensus 152 it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~~~~ 231 (387)
||+|+|||||+||||++++|||+++|++|+||+.+| |+|+++|+|+.++++||++|++|+++.+.+++++.+. .++
T Consensus 80 i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~~~~-d~vitvD~H~~~~~~~f~~~~~~l~a~~~la~~i~~~---~~~ 155 (285)
T PRK00934 80 ITLVIPYLGYARQDKRFKPGEPISARAIAKIISAYY-DRIITINIHEPSILEFFPIPFINLDAAPLIAEYIGDK---LDD 155 (285)
T ss_pred EEEEecCCcccccccccCCCCCccHHHHHHHHHHhc-CEEEEEcCChHHHcCcCCCcEeEeecHHHHHHHHHhc---CCC
Confidence 999999999999999999999999999999999998 9999999999999999999999999999999999542 357
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcE
Q 016576 232 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGARE 311 (387)
Q Consensus 232 ~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~ 311 (387)
++||+||.||.+||..+|+.++ +|+.+++|.|...+..+.....++++||+|+|||||+|||+|+.++++.|+++||++
T Consensus 156 ~vvv~pd~Ga~~~a~~lA~~l~-~~~~~i~k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~ 234 (285)
T PRK00934 156 PLVLAPDKGALELAKEAAEILG-CEYDYLEKTRISPTEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKILKEQGAKK 234 (285)
T ss_pred CEEEEeCCchHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEeccccccCCCEEEEEcCccccHHHHHHHHHHHHHCCCCE
Confidence 7999999999999999999996 999999999976544433334468999999999999999999999999999999999
Q ss_pred EEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCcccCCCCCceEEehHHHHHHHHH
Q 016576 312 VYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLGETIW 368 (387)
Q Consensus 312 V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla~~I~ 368 (387)
|+++|+||+|++++.++|.++++++|++|||+|+ +++++|++++||++|+
T Consensus 235 V~~~~~H~i~~~~a~~~l~~~~i~~i~~tnti~~-------~~~~~~va~~la~~i~ 284 (285)
T PRK00934 235 VYVACVHPVLVGDAILKLYNAGVDEIIVTDTLES-------EVSKISVAPLIADLLK 284 (285)
T ss_pred EEEEEEeeccCcHHHHHHHhCCCCEEEEcCCCCC-------CceEEEcHHHHHHHHh
Confidence 9999999999999999999999999999999975 4779999999999995
No 17
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-69 Score=500.62 Aligned_cols=317 Identities=32% Similarity=0.581 Sum_probs=293.3
Q ss_pred ccCCCCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHH
Q 016576 64 MIKNDTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDA 143 (387)
Q Consensus 64 ~~~~~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a 143 (387)
++....++.+|+|||+++||+.|+++||+++|+..+.+-+|+|+.|+|.++|||+||||+|+.+..+|.++||||+|+.|
T Consensus 2 ~n~a~sg~vl~s~ns~~elak~vaerlgi~~g~~~vy~~tnret~vei~~svrgkdvfiiqt~skdvn~~vmellim~ya 81 (354)
T KOG1503|consen 2 MNDASSGMVLFSGNSHPELAKMVAERLGIELGKATVYQKTNRETRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYA 81 (354)
T ss_pred CCcccCCeEEEcCCCCHHHHHHHHHHhcccccceEEEecCCCceEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHH
Q 016576 144 CRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLA 223 (387)
Q Consensus 144 ~r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~ 223 (387)
||.++|++|+.|||||||++|- |++.|.+|..|++|.|+..+|..+++++|||...+||||++|+|||.+.|.+.+|+.
T Consensus 82 ckts~aksiigvipy~pyskqc-kmrkrgsiv~klla~mmckaglthlitmdlhqkeiqgff~~pvdnlraspfllqyiq 160 (354)
T KOG1503|consen 82 CKTSCAKSIIGVIPYLPYSKQC-KMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFSIPVDNLRASPFLLQYIQ 160 (354)
T ss_pred HhhhhhhceEEEeecCccchhh-hhhhcccHHHHHHHHHHHhcccceEEeehhhhHhhcceecccccccccCHHHHHHHH
Confidence 9999999999999999999995 456788999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCC-------------Ce---------------eE--EE
Q 016576 224 SKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGH-------------NV---------------AE--VM 273 (387)
Q Consensus 224 ~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~-------------~~---------------~e--~~ 273 (387)
+...+++|.++|+-..|..++|..+|++|. +.+++++-+.+.. .. .+ -.
T Consensus 161 e~ipdyrnavivaksp~~akka~syaerlr-lglavihge~k~~e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kppl 239 (354)
T KOG1503|consen 161 EEIPDYRNAVIVAKSPGVAKKAQSYAERLR-LGLAVIHGEQKDTESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPL 239 (354)
T ss_pred HhCccccceEEEecCcchhhHHHhHHHHHh-hceeEeeccccccccccccCCcCCCCccccccCccccCchhhcccCCCe
Confidence 988889999999999999999999999996 7777776433210 00 00 13
Q ss_pred eeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCcccC-CCC
Q 016576 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSERN-YFP 352 (387)
Q Consensus 274 ~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~~-~~~ 352 (387)
.+.|||.||-.|+|||+||.-.++.+|++.||+.||-+||+++|||++|.+|..+|++++|++|++|||+|+.-++ +|+
T Consensus 240 tvvgdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lees~idevvvtntvphevqklqc~ 319 (354)
T KOG1503|consen 240 TVVGDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEESPIDEVVVTNTVPHEVQKLQCH 319 (354)
T ss_pred EEEeccCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchhhhhcCCCceEEEecCCcHHHHhhcCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999997654 799
Q ss_pred CceEEehHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 016576 353 QLTILSVANLLGETIWRVHDDCSDGYEPYSSLGID 387 (387)
Q Consensus 353 kl~vlsva~lla~~I~~~~~~~s~~~~~~~~~~~~ 387 (387)
|++.+||+-+|+|+|+||||||| +|.||.+
T Consensus 320 kiktvdislii~eairrihn~es-----m~ylfrn 349 (354)
T KOG1503|consen 320 KIKTVDISLIISEAIRRIHNGES-----MSYLFRN 349 (354)
T ss_pred ccceeehhhHHHHHHHHHhCCch-----HHHHHhh
Confidence 99999999999999999999999 9999864
No 18
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=100.00 E-value=5.3e-41 Score=285.69 Aligned_cols=116 Identities=53% Similarity=0.904 Sum_probs=102.6
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCC
Q 016576 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAK 150 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 150 (387)
|+||+|+++++||++||++||++++++++++|||||++|++.+++||+||||||++++|+||++||||++++|||++||+
T Consensus 1 m~I~~g~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 80 (116)
T PF13793_consen 1 MVIFSGSSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAK 80 (116)
T ss_dssp EEEEESSSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBS
T ss_pred CEEEECCCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCccccchhhccCCccchHHHHHHHHHHhC
Q 016576 151 NITAVIPYFGYARADRKTQGRESIAAKLVANLITEAG 187 (387)
Q Consensus 151 ~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G 187 (387)
+||+|+|||||+||||+ .+|||+++|.+|+||+++|
T Consensus 81 ~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~~~G 116 (116)
T PF13793_consen 81 RITLVIPYLPYARQDRR-KPGEPISAKVVAKLLSAAG 116 (116)
T ss_dssp EEEEEESS-TTTTSSSS-STTC--HHHHHHHHHHHHT
T ss_pred EEEEeccchhhhhhccC-CCCCcchHHHHHHHHHhcC
Confidence 99999999999999999 9999999999999999987
No 19
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=100.00 E-value=2.9e-40 Score=299.31 Aligned_cols=152 Identities=43% Similarity=0.690 Sum_probs=123.1
Q ss_pred CCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCC------------------------------CeeEEEeeecC
Q 016576 229 SDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGH------------------------------NVAEVMNLIGD 278 (387)
Q Consensus 229 ~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~------------------------------~~~e~~~l~gd 278 (387)
++|.|||+||.||.+||..||+.|+ +.+++++++|... +....+.++||
T Consensus 2 y~naVIVa~~~g~akRAts~Ad~L~-l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vVGD 80 (184)
T PF14572_consen 2 YRNAVIVAKDPGGAKRATSFADRLR-LGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVVGD 80 (184)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHCT--EEEEE------------------------------------------EEEES-
T ss_pred CCCCEEEeCCCCchHhHHHHHHHhC-CCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEEEE
Confidence 5688999999999999999999997 8999998877410 00112578899
Q ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCccc-CCCCCceEE
Q 016576 279 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSER-NYFPQLTIL 357 (387)
Q Consensus 279 V~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~-~~~~kl~vl 357 (387)
|+||+|||||||||||+|+.++++.||++||++||+++|||+|+++|.++|+++.|++||+|||||++.+ .+++|++++
T Consensus 81 V~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~vvvTnTIp~~~~~~~~~Ki~vl 160 (184)
T PF14572_consen 81 VKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEVVVTNTIPQEEQKLQCPKIKVL 160 (184)
T ss_dssp -TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEEEEETTS--HHHHHH-TTEEEE
T ss_pred ccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEEEEeccccCchhhhcCCCEeEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999764 469999999
Q ss_pred ehHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 016576 358 SVANLLGETIWRVHDDCSDGYEPYSSLGI 386 (387)
Q Consensus 358 sva~lla~~I~~~~~~~s~~~~~~~~~~~ 386 (387)
||+++|||+|+|+|+|+| +|.||.
T Consensus 161 dis~llaeaI~rih~~eS-----vs~LFr 184 (184)
T PF14572_consen 161 DISPLLAEAIRRIHNGES-----VSYLFR 184 (184)
T ss_dssp --HHHHHHHHHHHHHTHT-----SCCGGS
T ss_pred ehHHHHHHHHHHHHcCCC-----HHHhcC
Confidence 999999999999999999 999994
No 20
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.84 E-value=5.2e-20 Score=166.78 Aligned_cols=153 Identities=28% Similarity=0.320 Sum_probs=123.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCC-CCCeEEEecCCCchHHHHHHHHHcCCC
Q 016576 177 KLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAIS-SDDLVVVSPDVGGVARARAFAKKLSDA 255 (387)
Q Consensus 177 k~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~-~~~~vVVspd~Ggv~rA~~lA~~L~~~ 255 (387)
..++++|.+.|++++..++|||++.++|| +++..+...|.+.+++.+.... .+..+|++|+.||+++|..+|..++ .
T Consensus 3 ~~~~~~l~~~ga~~~g~f~L~SG~~s~~y-~d~~~l~~~p~~~~~l~~~l~~~~~~d~Vvg~~~gGi~~A~~~a~~l~-~ 80 (170)
T PRK13811 3 NTIAELLISYKAIEFGDFTLASGAKSRYY-IDIKTAITHPALLKEIAAEVAKRYDFDVVAGVAVGGVPLAVAVSLAAG-K 80 (170)
T ss_pred HHHHHHHHHCCCEEECCEEEccCCcCCEE-EeCchhccCHHHHHHHHHHHHhhCCCCEEEecCcCcHHHHHHHHHHHC-C
Confidence 46899999999999999999999999988 4555677778777777654311 2345899999999999999999996 9
Q ss_pred CEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCC
Q 016576 256 PLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLF 334 (387)
Q Consensus 256 ~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i 334 (387)
|+.+++|+++.++... ...|+++||+|+||||+++||+|+.++++.|+++||+-+.+++.-..- .++.+++++.++
T Consensus 81 p~~~~rK~~k~~g~~~--~~~g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~-~g~~~~l~~~gv 156 (170)
T PRK13811 81 PYAIIRKEAKDHGKAG--LIIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDRE-QGAEELLAELGI 156 (170)
T ss_pred CEEEEecCCCCCCCcc--eEEcccCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECC-ccHHHHHHhcCC
Confidence 9999999876655432 346789999999999999999999999999999999988887754432 356777765443
No 21
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.67 E-value=9.5e-16 Score=139.73 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccc----hHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHH
Q 016576 175 AAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYG----QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAK 250 (387)
Q Consensus 175 sak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a----~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~ 250 (387)
+.+.+.+.|...|+-+.-.+.|-|++.+.|| +....+.. .+.+++++.+.. . +..+|++|+.||+++|..+|.
T Consensus 2 ~~~~l~~~l~~~~a~~~g~f~l~SG~~S~~y-id~~~~~~~p~~~~~i~~~l~~~i-~-~~d~ivg~~~ggi~lA~~lA~ 78 (176)
T PRK13812 2 ATDDLIAALRDADAVQFGEFELSHGGTSEYY-VDKYLFETDPDCLRLIAEAFADRI-D-EDTKLAGVALGAVPLVAVTSV 78 (176)
T ss_pred cHHHHHHHHHHCCCEEeCCEEECcCCcCCEE-EeCeeccCCHHHHHHHHHHHHHHh-c-cCCEEEEeecchHHHHHHHHH
Confidence 3466788888888877777888888887665 33333333 345666666553 2 236999999999999999999
Q ss_pred HcCCCCEEEEEEeecCCCeeEEEeeecCC-CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHH
Q 016576 251 KLSDAPLAIVDKRRQGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 329 (387)
Q Consensus 251 ~L~~~~~~~v~K~R~~~~~~e~~~l~gdV-~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L 329 (387)
.|+ .|+.+.+|+++.++..+. ..|++ +|++|+||||+++||+|+.++++.|+++||+.+.+++.-..- .++.+++
T Consensus 79 ~l~-~p~~~~rk~~k~yg~~~~--~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~-~~~~~~l 154 (176)
T PRK13812 79 ETG-VPYVIARKQAKEYGTGNR--IEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDRE-EGARENL 154 (176)
T ss_pred HHC-CCEEEEeccCCcCCCCCe--EEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECC-cchHHHH
Confidence 996 999999998876554322 35677 899999999999999999999999999999988888743322 3456677
Q ss_pred hcCCC
Q 016576 330 SSGLF 334 (387)
Q Consensus 330 ~~s~i 334 (387)
++.++
T Consensus 155 ~~~g~ 159 (176)
T PRK13812 155 ADHDV 159 (176)
T ss_pred HhcCC
Confidence 65543
No 22
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.67 E-value=4.6e-16 Score=160.38 Aligned_cols=146 Identities=28% Similarity=0.334 Sum_probs=109.0
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCE--EEEEEeecCC-----C-----eeEEE--eeecC-CCC
Q 016576 217 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPL--AIVDKRRQGH-----N-----VAEVM--NLIGD-VKG 281 (387)
Q Consensus 217 ~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~--~~v~K~R~~~-----~-----~~e~~--~l~gd-V~G 281 (387)
.+.+.|.+......+.++..|| +|..+|..+|+.|+ +|+ .+++|++.+. . ....+ ...++ ++|
T Consensus 263 ~~G~~La~~~~~~~d~Vv~vPd-~g~~~A~~~A~~lg-ip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~g 340 (445)
T PRK08525 263 KMGEELAKKFPIKADFVVPVPD-SGVPAAIGYAQESG-IPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEG 340 (445)
T ss_pred HHHHHHHHHhcccCCeEEECCc-hHHHHHHHHHHHhC-CCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCC
Confidence 3555555543223456777777 56999999999996 887 5666654221 1 00112 23344 899
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCccc---CCCCCceEEe
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSER---NYFPQLTILS 358 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~~---~~~~kl~vls 358 (387)
|+|+||||+++||+|+.++++.|+++||++|+++++||+|..++.+.|..+.++++++||.-. .+- ...+-|..+|
T Consensus 341 K~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~~~~~~~li~~~~~~-~ei~~~~~adsl~~ls 419 (445)
T PRK08525 341 KRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEELISANKSV-EEVRKYIGADSLSFLS 419 (445)
T ss_pred CeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCcCCChhhEEEcCCCH-HHHHHHhCCCeEeccC
Confidence 999999999999999999999999999999999999999999999999988999999999732 211 2356688888
Q ss_pred hHHHHHH
Q 016576 359 VANLLGE 365 (387)
Q Consensus 359 va~lla~ 365 (387)
+..|..-
T Consensus 420 ~~~l~~~ 426 (445)
T PRK08525 420 IDELTRS 426 (445)
T ss_pred HHHHHHH
Confidence 8766543
No 23
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.65 E-value=2.2e-15 Score=140.53 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=114.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHH----HHhhcCCCCCeEEEecCCCchHHHHHHHHHc
Q 016576 177 KLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDY----LASKAISSDDLVVVSPDVGGVARARAFAKKL 252 (387)
Q Consensus 177 k~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~----L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L 252 (387)
+.+..+|.+.|+-++-.+-|-|++.+.+| +....+...|.+.+. +.+.....+..+|++|+.||+++|..+|.++
T Consensus 11 ~~l~~~l~~~gal~~g~F~L~SG~~S~~y-~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l 89 (206)
T PRK13809 11 DQAVAILYQIGAIKFGKFILASGEETPIY-VDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKY 89 (206)
T ss_pred HHHHHHHHHcCCEEECCEEECCcCCCCEE-EEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHh
Confidence 34666777788888888888888877665 334444444444433 4333222345689999999999999999999
Q ss_pred CCCCEEEEEEeecCCCeeEEEeeecC-CCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhc
Q 016576 253 SDAPLAIVDKRRQGHNVAEVMNLIGD-VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS 331 (387)
Q Consensus 253 ~~~~~~~v~K~R~~~~~~e~~~l~gd-V~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~ 331 (387)
+ +|+.+++|+++.++..+.+.+.|. .+|++|+||||+++||+|+.++++.|+++|++.+.++|.-... .++.+++.+
T Consensus 90 ~-~p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~-~~~~~~l~~ 167 (206)
T PRK13809 90 N-IPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQ-KGACQPLGP 167 (206)
T ss_pred C-CCEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECc-ccHHHHHHh
Confidence 6 999999998877665544444554 4899999999999999999999999999999988888754432 356777765
Q ss_pred C
Q 016576 332 G 332 (387)
Q Consensus 332 s 332 (387)
.
T Consensus 168 ~ 168 (206)
T PRK13809 168 Q 168 (206)
T ss_pred c
Confidence 4
No 24
>PLN02293 adenine phosphoribosyltransferase
Probab=99.62 E-value=9.4e-15 Score=134.40 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=91.3
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCee-----------EEEe-eecCC-CCCEEEEEecccCchHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVA-----------EVMN-LIGDV-KGKVAVMVDDMIDTAGT 296 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~-----------e~~~-l~gdV-~Gk~VIIVDDIIdTG~T 296 (387)
+..+|++|+.||+.+|..+|..|+ +|+.+++|.|+..+.. ..+. ..|.+ +|++|+||||+++||+|
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg-~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T 140 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIG-AKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGT 140 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHC-CCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHH
Confidence 446899999999999999999996 9999999987532111 1111 13667 79999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEE
Q 016576 297 ISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVII 339 (387)
Q Consensus 297 l~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~Ivv 339 (387)
+.++++.|+++||+.+.++|.|+++..++.+++.+.++..++.
T Consensus 141 ~~~~~~~l~~~Ga~~v~~~~~~~~~~~~g~~~l~~~~~~sl~~ 183 (187)
T PLN02293 141 LCAAINLLERAGAEVVECACVIELPELKGREKLNGKPLFVLVE 183 (187)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEEcCCccHHHHhcCCceEEEEe
Confidence 9999999999999999999999999999999998766666663
No 25
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.55 E-value=1.2e-13 Score=127.04 Aligned_cols=155 Identities=23% Similarity=0.311 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHH----HhhcCCCCCeEEEecCCCchHHHHHHHH
Q 016576 175 AAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYL----ASKAISSDDLVVVSPDVGGVARARAFAK 250 (387)
Q Consensus 175 sak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L----~~~~~~~~~~vVVspd~Ggv~rA~~lA~ 250 (387)
..+.+.++|...|+-+.-.+-|-|++...+| +....+...|.+.+.+ .+...+.+-..|+++..||++.|..+|.
T Consensus 15 ~~~~l~~~l~~~ga~~~g~F~L~SG~~s~~y-iD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~ 93 (187)
T PRK13810 15 QKQELIAALKACGAVRYGDFTLSSGKKSKYY-IDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSL 93 (187)
T ss_pred HHHHHHHHHHHCCCeEecCEEEcCCCcCCEE-EECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHH
Confidence 4455788888888877777888888887665 3444555555544443 3332223445899999999999999999
Q ss_pred HcCCCCEEEEEEeecCCCeeEEEeeecCC-CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHH
Q 016576 251 KLSDAPLAIVDKRRQGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL 329 (387)
Q Consensus 251 ~L~~~~~~~v~K~R~~~~~~e~~~l~gdV-~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L 329 (387)
.++ +|+.+++|..+.++.... ..|.+ +|++|+||||+++||+|+.++++.++++||..+.+++.-..- .++.++|
T Consensus 94 ~l~-~p~v~vRK~~k~~g~~~~--~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~-~g~~~~l 169 (187)
T PRK13810 94 ETG-LPLLIVRKSVKDYGTGSR--FVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDRE-EGAEENL 169 (187)
T ss_pred HhC-CCEEEEecCCCccCCCce--EEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECC-cChHHHH
Confidence 996 999999998766654332 35655 799999999999999999999999999999988888755533 4678888
Q ss_pred hcCCC
Q 016576 330 SSGLF 334 (387)
Q Consensus 330 ~~s~i 334 (387)
++.++
T Consensus 170 ~~~gi 174 (187)
T PRK13810 170 KEADV 174 (187)
T ss_pred HHcCC
Confidence 76554
No 26
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.52 E-value=1.5e-13 Score=128.54 Aligned_cols=114 Identities=23% Similarity=0.319 Sum_probs=98.8
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCee--E-EEeeecCCCCCEEEEEecccCchHHHHHHHHHHHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVA--E-VMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQ 306 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~--e-~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~ 306 (387)
+++++|+++.||..++..+++.++.+++.++.++|+..+.. . ...+.++++||+|||||||++||+|+..+++.|++
T Consensus 70 ~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 149 (209)
T PRK00129 70 KKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKK 149 (209)
T ss_pred CeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHH
Confidence 46899999999999999999999767888888888643211 1 23567789999999999999999999999999999
Q ss_pred cCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCC
Q 016576 307 EGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 345 (387)
Q Consensus 307 ~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~ 345 (387)
+|+++|.++|+ ++++.+++++.+...+--++|.+|..
T Consensus 150 ~G~~~I~~~~l--l~~~~gl~~l~~~~p~v~i~~~~iD~ 186 (209)
T PRK00129 150 RGAKNIKVLCL--VAAPEGIKALEEAHPDVEIYTAAIDE 186 (209)
T ss_pred cCCCEEEEEEE--ecCHHHHHHHHHHCCCcEEEEEeecC
Confidence 99999999997 88999999998887888888888864
No 27
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.51 E-value=3.1e-13 Score=122.76 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=90.5
Q ss_pred cccchHHHHHHHHh----hcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCe-----------eEEEee
Q 016576 211 HVYGQPVILDYLAS----KAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-----------AEVMNL 275 (387)
Q Consensus 211 ~L~a~~~la~~L~~----~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~-----------~e~~~l 275 (387)
++...|.+.+++.+ .+.+.+..+|++|+.||+.+|..+|..|+ +|+.+++|.++.... .+.+.+
T Consensus 28 ~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l 106 (175)
T PRK02304 28 PLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLG-IGFVPVRKPGKLPRETISESYELEYGTDTLEI 106 (175)
T ss_pred hHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhC-CCEEEEEcCCCCCCceEeEEEecccCceEEEE
Confidence 44445555444433 32223457999999999999999999996 999988876542111 112233
Q ss_pred ecC--CCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEE
Q 016576 276 IGD--VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVI 338 (387)
Q Consensus 276 ~gd--V~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~Iv 338 (387)
.++ ++|++|+||||+++||+|+.++++.|+++||+.|.++|.+..-..++.+++..-.+..++
T Consensus 107 ~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~l~~~~~~sl~ 171 (175)
T PRK02304 107 HKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREKLEGYPVKSLV 171 (175)
T ss_pred chhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccccchhhcCCCceEEEE
Confidence 333 799999999999999999999999999999999999997665443456776522344443
No 28
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.51 E-value=1.9e-13 Score=124.12 Aligned_cols=145 Identities=22% Similarity=0.321 Sum_probs=99.5
Q ss_pred HHHhCCCEEEEecCCchhcccccCcccccccchHHHHHH----HHhhcCC-CCCeEEEecCCCchHHHHHHHHHcCCCC-
Q 016576 183 ITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDY----LASKAIS-SDDLVVVSPDVGGVARARAFAKKLSDAP- 256 (387)
Q Consensus 183 L~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~----L~~~~~~-~~~~vVVspd~Ggv~rA~~lA~~L~~~~- 256 (387)
|...|+-+.--+.+-|++...+| +....+...|.+.+. +.+...+ .+..+|++|+.||+++|..+|..|+ .|
T Consensus 3 l~~~~a~~~g~f~l~SG~~s~~y-~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~-~~~ 80 (173)
T TIGR00336 3 LLEVQALKFGEFTLSSGRKSPYY-FNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLA-KPG 80 (173)
T ss_pred hhhcCCEEeCcEEECCCCcCCEE-EECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhc-CcC
Confidence 33445544445667777766554 223333333333322 2222111 3567999999999999999999996 88
Q ss_pred ----EEEEEEeecCCCeeEEEeeecCC-CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhc
Q 016576 257 ----LAIVDKRRQGHNVAEVMNLIGDV-KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS 331 (387)
Q Consensus 257 ----~~~v~K~R~~~~~~e~~~l~gdV-~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~ 331 (387)
+.+++|.++.++... ...|.+ +|++|+||||+++||+|+.++++.|+++||+.+.++|.-..-..++.+++.+
T Consensus 81 ~~~~~~~~rk~~k~~g~~~--~~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~ 158 (173)
T TIGR00336 81 GDIPLCFNRKEAKDHGEGG--NIEGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEK 158 (173)
T ss_pred CCceEEEEcCCcccCCCCC--ceecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHH
Confidence 888888776544322 234555 8999999999999999999999999999999888888544333246777754
No 29
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.50 E-value=6.9e-13 Score=123.25 Aligned_cols=156 Identities=24% Similarity=0.296 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhCCCEEEEecCCchhccccc-Ccc-c-ccccchHHHHHHHHhhcCC--CCCeEEEecCCCchHHHHHHH
Q 016576 175 AAKLVANLITEAGANRVLACDLHSGQSMGYF-DIP-V-DHVYGQPVILDYLASKAIS--SDDLVVVSPDVGGVARARAFA 249 (387)
Q Consensus 175 sak~vA~lL~~~G~d~VitvDlHs~~~~g~F-~ip-v-d~L~a~~~la~~L~~~~~~--~~~~vVVspd~Ggv~rA~~lA 249 (387)
..+.+++.|..+|+-+...+-+-|++...+| |.. . .+-.....+++.+.++..+ .+..+|++++.||+++|..+|
T Consensus 4 ~~~~~~~~~~~~~a~~~G~f~l~SG~~s~~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la 83 (202)
T PRK00455 4 YAREFIEFLLEIGALLFGHFTLSSGRKSPYYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVA 83 (202)
T ss_pred HHHHHHHHHHHcCCeeCCCEEECCCCcCCeeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHH
Confidence 4567888898888855444556666655443 422 1 1111223333333332211 134589999999999999999
Q ss_pred HHcCCCCEEEEEEeecCCCeeEEEeeec-CCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHH
Q 016576 250 KKLSDAPLAIVDKRRQGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIER 328 (387)
Q Consensus 250 ~~L~~~~~~~v~K~R~~~~~~e~~~l~g-dV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~ 328 (387)
..|+ +|+.+++|.++.++... .+.+ .++||+|+||||+++||+|+.++++.|+++||+.+.+++....- .+..++
T Consensus 84 ~~L~-~~~~~~rk~~~~~g~~~--~~~~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~-~~~~~~ 159 (202)
T PRK00455 84 RALD-LPAIFVRKEAKDHGEGG--QIEGRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ-SAAQEV 159 (202)
T ss_pred HHhC-CCEEEEecccCCCCCCc--eEEccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECc-chHHHH
Confidence 9996 99999988765443221 2234 35899999999999999999999999999999999999865542 234556
Q ss_pred HhcCCC
Q 016576 329 LSSGLF 334 (387)
Q Consensus 329 L~~s~i 334 (387)
+++.++
T Consensus 160 ~~~~g~ 165 (202)
T PRK00455 160 FADAGV 165 (202)
T ss_pred HHhcCC
Confidence 655444
No 30
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.50 E-value=1.9e-13 Score=123.42 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=77.6
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCC--EEEEEEe--ecCC---CeeEE-EeeecCCCCCEEEE
Q 016576 215 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKR--RQGH---NVAEV-MNLIGDVKGKVAVM 286 (387)
Q Consensus 215 ~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~--~~~v~K~--R~~~---~~~e~-~~l~gdV~Gk~VII 286 (387)
...+++.|.+.. ..+++++|+|+.||+.+|..+++.|+ .+ +.++.-. |++. +.... ..+.++++||+|+|
T Consensus 12 i~~lA~~I~~~~-~~~~~vvv~i~~GG~~~a~~l~~~L~-~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vli 89 (166)
T TIGR01203 12 IAELAKQITEDY-AGKPLVLLCVLKGSFPFFADLIRYIA-VPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLI 89 (166)
T ss_pred HHHHHHHHHHHc-CCCCeEEEEEccCCHHHHHHHHHhcC-CCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEE
Confidence 456777776653 34678999999999999999999996 65 4445433 2111 11221 23456899999999
Q ss_pred EecccCchHHHHHHHHHHHHcCCcEEEEEEE
Q 016576 287 VDDMIDTAGTISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 287 VDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
||||+|||+|+.++++.|++.||++|+++|.
T Consensus 90 vDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l 120 (166)
T TIGR01203 90 VEDIVDTGLTLQYLLDLLKARKPKSLKIVTL 120 (166)
T ss_pred EeeeeCcHHHHHHHHHHHHHCCCCEEEEEEE
Confidence 9999999999999999999999999999993
No 31
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.48 E-value=8.1e-13 Score=121.59 Aligned_cols=134 Identities=22% Similarity=0.290 Sum_probs=94.6
Q ss_pred HHHHHHHhCCCEEEEecCCchhcccccCcccccccchHH----HHHHHHhhc--CCCCCeEEEecCCCchHHHHHHHHHc
Q 016576 179 VANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPV----ILDYLASKA--ISSDDLVVVSPDVGGVARARAFAKKL 252 (387)
Q Consensus 179 vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~----la~~L~~~~--~~~~~~vVVspd~Ggv~rA~~lA~~L 252 (387)
+++++...|+-....+.+-|+....+| +....+...+. +++.+.++. .+.+..+|++++.||+.+|..++..|
T Consensus 2 ~~~~~~~~~~~~~g~f~l~sg~~s~~y-id~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L 80 (187)
T TIGR01367 2 VLDIYKQAGALHEGHFLLSSGKHSPYF-LQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQL 80 (187)
T ss_pred HHHHHHHcCCeeeceEEecCCCcCCee-EechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHh
Confidence 567777888877777777777665443 22223332222 222232222 12356799999999999999999999
Q ss_pred CCCCEEEEEEeecCCCeeEEEeeec-C-CCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc
Q 016576 253 SDAPLAIVDKRRQGHNVAEVMNLIG-D-VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA 319 (387)
Q Consensus 253 ~~~~~~~v~K~R~~~~~~e~~~l~g-d-V~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 319 (387)
+ +|+.+.+|.+. .... ..+ . .+||+|+||||+++||+|+.++++.|+++||+.|.+++...
T Consensus 81 ~-~~~i~~~k~~~---~~~~--~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid 143 (187)
T TIGR01367 81 S-VRSIFAEREGG---GMKL--RRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIID 143 (187)
T ss_pred C-CCeEEEEEeCC---cEEE--eecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEE
Confidence 6 89887776552 1111 122 2 48999999999999999999999999999999998888433
No 32
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.48 E-value=2.6e-13 Score=140.83 Aligned_cols=145 Identities=26% Similarity=0.248 Sum_probs=104.3
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeec--------------CCCeeEEEeeecCCCC
Q 016576 217 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQ--------------GHNVAEVMNLIGDVKG 281 (387)
Q Consensus 217 ~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~--------------~~~~~e~~~l~gdV~G 281 (387)
.+++.|.+......+.++..|| +|..+|..+|+.++ +|+.. +.|.|. .....+.....++++|
T Consensus 276 ~~G~~La~~~~~~~D~Vv~vPd-sg~~~A~~~A~~lg-ip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~g 353 (469)
T PRK05793 276 RAGRQLYKEYPVDADIVIGVPD-SGIPAAIGYAEASG-IPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEG 353 (469)
T ss_pred HHHHHHHHhcCCCCCEEEEcCc-cHHHHHHHHHHHhC-CCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCC
Confidence 3555665543222344444455 56999999999996 99864 233321 0001111123467899
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCcc---cCCCCCceEEe
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSE---RNYFPQLTILS 358 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~---~~~~~kl~vls 358 (387)
|+||||||+|+||+|+.++++.|+++||++|+++++||.|..++...+..+..++++..+-- .++ .....-|..+|
T Consensus 354 k~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p~~~gid~~~~~elia~~~~-~~ei~~~~g~dsl~~ls 432 (469)
T PRK05793 354 KRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYPCYFGIDTPYRKELIGANMS-VEEIREMIGADSLGYLS 432 (469)
T ss_pred CEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcchhhhccCCChhhEEEcCCC-HHHHHHHhCCCeEeccC
Confidence 99999999999999999999999999999999999999999999999988889999987752 211 11345688888
Q ss_pred hHHHHH
Q 016576 359 VANLLG 364 (387)
Q Consensus 359 va~lla 364 (387)
+..++.
T Consensus 433 ~~~l~~ 438 (469)
T PRK05793 433 IEGLLE 438 (469)
T ss_pred HHHHHH
Confidence 866654
No 33
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.48 E-value=3.6e-13 Score=123.20 Aligned_cols=102 Identities=21% Similarity=0.314 Sum_probs=80.1
Q ss_pred chHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCE--EEEEEeecCCCee--E---EEeeecCCCCCEEEE
Q 016576 214 GQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPL--AIVDKRRQGHNVA--E---VMNLIGDVKGKVAVM 286 (387)
Q Consensus 214 a~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~--~~v~K~R~~~~~~--e---~~~l~gdV~Gk~VII 286 (387)
....++++|.+.. ..++.++|+++.||..+|+.+++.|+ +++ .++.+.|...... . .....++++||+|||
T Consensus 25 ~i~~la~~i~~~~-~~~~~viV~i~~gg~~~A~~La~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLI 102 (181)
T PRK09162 25 AIDRMADEITADL-ADENPLVLCVMGGGLVFTGQLLPRLD-FPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLV 102 (181)
T ss_pred HHHHHHHHHHHHc-CCCCeEEEEECCCcHHHHHHHHHHcC-CCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEE
Confidence 4566777777653 34567999999999999999999996 775 4666665432111 1 123346799999999
Q ss_pred EecccCchHHHHHHHHHHHHcCCcEEEEEEE
Q 016576 287 VDDMIDTAGTISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 287 VDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
||||+|||.|+.++++.|++.||++|++++.
T Consensus 103 VDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL 133 (181)
T PRK09162 103 VDDILDEGHTLAAIRDRCLEMGAAEVYSAVL 133 (181)
T ss_pred EccccCcHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 9999999999999999999999999999983
No 34
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.48 E-value=4.2e-13 Score=122.49 Aligned_cols=116 Identities=22% Similarity=0.377 Sum_probs=88.6
Q ss_pred hcccccCcccccccchHHHHHHHHhhc---CCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCe------e
Q 016576 200 QSMGYFDIPVDHVYGQPVILDYLASKA---ISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV------A 270 (387)
Q Consensus 200 ~~~g~F~ipvd~L~a~~~la~~L~~~~---~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~------~ 270 (387)
++++.|+++..++...+.+++.+.+.. +..+..+|++++.||+++|..+|..++ +|+.+++|.+..... .
T Consensus 19 ~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~~~d~Iv~v~~gGiplA~~lA~~L~-~p~~~~~k~~~~~~~~~~~~~~ 97 (178)
T PRK07322 19 RVGPDLAIALFVILGDTELTEAAAEALAKRLPTEVDVLVTPETKGIPLAHALSRRLG-KPYVVARKSRKPYMQDPIIQEV 97 (178)
T ss_pred EeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCCCCCEEEEeccCCHHHHHHHHHHHC-CCEEEEEEeCCCCCCCceEEEE
Confidence 456677788888888777766665432 222456999999999999999999996 999888776642110 0
Q ss_pred --------EEEee----ecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE
Q 016576 271 --------EVMNL----IGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 271 --------e~~~l----~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
+...+ ..+++||+|+||||+++||+|+.++++.|+++||+.|.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~ 155 (178)
T PRK07322 98 VSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAA 155 (178)
T ss_pred EEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEE
Confidence 01111 12478999999999999999999999999999999999888
No 35
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.45 E-value=1e-12 Score=120.95 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=103.2
Q ss_pred EEEEecCCchhcccccCcccccccchHHH----HHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeec
Q 016576 190 RVLACDLHSGQSMGYFDIPVDHVYGQPVI----LDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQ 265 (387)
Q Consensus 190 ~VitvDlHs~~~~g~F~ipvd~L~a~~~l----a~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~ 265 (387)
+++.--+|++...+|+++ ..+.. |.+ ++.+.+.. +.+-.+|++|+.||+++|..+|..++ .|+.+++|.|.
T Consensus 11 ~~~~~~~~~~~~~~~~D~--~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~-~p~~~~rk~~~ 85 (187)
T PRK12560 11 RVVNSGKALTTVNEFTDQ--LPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSG-KPLAMARWYPY 85 (187)
T ss_pred CccCCCCCCCcceeEEeC--hhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhC-CCEEEeccCCC
Confidence 666666677665566653 23333 433 33444433 44456999999999999999999996 99999988764
Q ss_pred CCCe------------eE-EEeeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHH-hc
Q 016576 266 GHNV------------AE-VMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERL-SS 331 (387)
Q Consensus 266 ~~~~------------~e-~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L-~~ 331 (387)
.... .+ .+...+..+|++|+||||+++||+|+.++++.|+++||..+.++|.-..-..++.+.+ ++
T Consensus 86 ~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~ 165 (187)
T PRK12560 86 SLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQ 165 (187)
T ss_pred cccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchHHHHhhc
Confidence 3210 11 1223345689999999999999999999999999999999888875443322456666 32
Q ss_pred C--CCCEEEEeCCCCC
Q 016576 332 G--LFQEVIITNTIPV 345 (387)
Q Consensus 332 s--~i~~IvvTnTi~~ 345 (387)
. ++..++..+..++
T Consensus 166 ~gv~v~sl~~~~~~~~ 181 (187)
T PRK12560 166 TGINVKSLVKIDVKPH 181 (187)
T ss_pred cCCcEEEEEEEEEecC
Confidence 2 4556665555443
No 36
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.45 E-value=7e-13 Score=123.18 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=81.1
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeE----EE-eeecCCCCCEEEEEecccCchHHHHHHHHHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAE----VM-NLIGDVKGKVAVMVDDMIDTAGTISKGAALL 304 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e----~~-~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~L 304 (387)
+..+|++++.||+++|..+|..|+ .++.+.++++..++... .+ ...++++||+|+||||+++||+|+.++++.|
T Consensus 85 ~~D~Ivgi~~gG~~~A~~lA~~L~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l 163 (200)
T PRK02277 85 EVDVVVGIAKSGVPLATLVADELG-KDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYL 163 (200)
T ss_pred CCCEEEeeccCCHHHHHHHHHHhC-CCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHHHHHHH
Confidence 346899999999999999999996 89888776653222111 11 1225689999999999999999999999999
Q ss_pred HHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEE
Q 016576 305 HQEGAREVYACSTHAVFSPPAIERLSSGLFQEVII 339 (387)
Q Consensus 305 k~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~Ivv 339 (387)
+++||+.+.++| ++..++.+.+...++..++.
T Consensus 164 ~~~Ga~~v~v~v---lvdk~g~~~~~~vpv~sl~~ 195 (200)
T PRK02277 164 KEHGGKPVAVVV---LIDKSGIDEIDGVPVYSLIR 195 (200)
T ss_pred HHcCCEEEEEEE---EEECcchhhhcCCCeEEEEE
Confidence 999999999998 55555555554444555553
No 37
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.45 E-value=3.4e-12 Score=118.16 Aligned_cols=156 Identities=28% Similarity=0.353 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHh----hcCC-CCCeEEEecCCCchHHHHHHHH
Q 016576 176 AKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLAS----KAIS-SDDLVVVSPDVGGVARARAFAK 250 (387)
Q Consensus 176 ak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~----~~~~-~~~~vVVspd~Ggv~rA~~lA~ 250 (387)
.+.+++++-..|+-+..-+.|-|++.+.|| +....+...|.+.+.+.. ...+ .+..+|++|..||++.|..+|.
T Consensus 3 ~~~~~~~l~~~~a~~fG~f~LsSG~~SpyY-~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~ 81 (201)
T COG0461 3 KRELAELLLEKGALKFGEFTLSSGRKSPYY-VDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATAL 81 (201)
T ss_pred hHHHHHHHHHcCCeecCceeecCCCcCCeE-EecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHH
Confidence 356777776688888888889898887665 333344445554444432 2222 2456999999999999999999
Q ss_pred HcCCCC-EEEEEEeecCCCeeEEEeeec-CCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHH
Q 016576 251 KLSDAP-LAIVDKRRQGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIER 328 (387)
Q Consensus 251 ~L~~~~-~~~v~K~R~~~~~~e~~~l~g-dV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~ 328 (387)
+|.+.+ +.+++|+.++|+... .+.| ..+|++|+||||++|||+++.++++.|+++|+..+.++|.-..- .++.+.
T Consensus 82 ~l~~~~~~~~~Rke~K~hG~~~--~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~-~~~~~~ 158 (201)
T COG0461 82 ALAHLPPMAYVRKEAKDHGTGG--LIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQ-SGAKEV 158 (201)
T ss_pred HhccCCcEEEEeceeccCCCcc--eeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecc-hhHHHH
Confidence 983013 888999888887642 2343 44899999999999999999999999999999987777732211 345666
Q ss_pred HhcCCCC
Q 016576 329 LSSGLFQ 335 (387)
Q Consensus 329 L~~s~i~ 335 (387)
+.+.++.
T Consensus 159 ~~~~g~~ 165 (201)
T COG0461 159 LKEYGVK 165 (201)
T ss_pred HHhcCCc
Confidence 6665544
No 38
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.44 E-value=1.2e-12 Score=110.98 Aligned_cols=101 Identities=33% Similarity=0.445 Sum_probs=77.2
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeec----------CCCeeEE-EeeecCCCCCE
Q 016576 215 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQ----------GHNVAEV-MNLIGDVKGKV 283 (387)
Q Consensus 215 ~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~----------~~~~~e~-~~l~gdV~Gk~ 283 (387)
...++++|.+.. .+...++++..||+.+|..++..|+ .|+.+..+... ..+.... ......++||+
T Consensus 14 ~~~la~~i~~~~--~~~~~ivgi~~~G~~~a~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 90 (125)
T PF00156_consen 14 AERLAEQIKESG--FDFDVIVGIPRGGIPLAAALARALG-IPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKR 90 (125)
T ss_dssp HHHHHHHHHHHT--TTSSEEEEETTTTHHHHHHHHHHHT-HEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSE
T ss_pred HHHHHHHHHHhC--CCCCEEEeehhccHHHHHHHHHHhC-CCccceeeeecccccchhhhhccCceEEeeccccccccee
Confidence 455677776653 3444699999999999999999996 78776654321 1111111 13345789999
Q ss_pred EEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEc
Q 016576 284 AVMVDDMIDTAGTISKGAALLHQEGAREVYACSTH 318 (387)
Q Consensus 284 VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tH 318 (387)
|+||||+++||+|+..+++.|+++|++.|.+++.|
T Consensus 91 vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 91 VLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred EEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 99999999999999999999999999999999864
No 39
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.40 E-value=3.4e-12 Score=132.27 Aligned_cols=188 Identities=17% Similarity=0.198 Sum_probs=134.5
Q ss_pred hhhHHHHHHHHHHHHhc---CCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCc
Q 016576 131 NENIMELLVMIDACRRA---SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDI 207 (387)
Q Consensus 131 nd~lmeLll~i~a~r~~---~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~i 207 (387)
.+...+|---++..|.. +..+..+..|-.+...|+.+ +.++..|-..|+-+..-+-|-|++.+.+| +
T Consensus 248 ~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~l~~~~al~fG~F~L~SG~~S~~Y-i 317 (477)
T PRK05500 248 KEQVKSLREEINQIRQQIVQESSSCDLWTPDVCLLNQHPH---------QDLILQLYDIGCLLFGEYVQASGATFSYY-I 317 (477)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccCccccccccCcH---------HHHHHHHHHCCCeEeCcEEECCcCcCCEE-E
Confidence 44555565555655542 23467788888777766433 24677777788877777888888887666 4
Q ss_pred ccccccchHHHHHH----HHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCC-CCC
Q 016576 208 PVDHVYGQPVILDY----LASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDV-KGK 282 (387)
Q Consensus 208 pvd~L~a~~~la~~----L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV-~Gk 282 (387)
....+...|.+.+. +.+...+.+-..|++|..||++.|..+|..++ .|+.+++|+.+.+++.. .+.|.+ +|+
T Consensus 318 D~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg-~p~v~vRKe~K~~G~~~--~ieG~~~~G~ 394 (477)
T PRK05500 318 DLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLH-HPMIFPRKEVKAHGTRR--LIEGNFHPGE 394 (477)
T ss_pred EChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhC-CCEEEEecCcCccCCCc--eEecCCCCcC
Confidence 45555445554443 33332222345899999999999999999996 99999999887776544 346776 899
Q ss_pred EEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcC
Q 016576 283 VAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSG 332 (387)
Q Consensus 283 ~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s 332 (387)
+|+||||+++||+|+.++++.|+++|++.+.+++.-..- .++.++|++.
T Consensus 395 rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~-~g~~~~L~~~ 443 (477)
T PRK05500 395 TVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHE-QGVKDKLQSH 443 (477)
T ss_pred EEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECC-cchHHHHHhc
Confidence 999999999999999999999999999987777743322 2556777553
No 40
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.40 E-value=4.5e-12 Score=115.80 Aligned_cols=107 Identities=18% Similarity=0.351 Sum_probs=83.0
Q ss_pred chHHHHHHHHhhcCC-CCCeEEEecCCCchHHHHHHHHHcCCCC--EEEEEEeecCCC-----eeEEE-eeecCCCCCEE
Q 016576 214 GQPVILDYLASKAIS-SDDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKRRQGHN-----VAEVM-NLIGDVKGKVA 284 (387)
Q Consensus 214 a~~~la~~L~~~~~~-~~~~vVVspd~Ggv~rA~~lA~~L~~~~--~~~v~K~R~~~~-----~~e~~-~l~gdV~Gk~V 284 (387)
....+|..|.+.+.+ ..++++|+++.||+.+|..+++.|+ .| +.++++.+.+.+ ...+. ....+++||+|
T Consensus 17 ~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~-~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~V 95 (178)
T PRK15423 17 RIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQ-VSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDV 95 (178)
T ss_pred HHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhC-CCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEE
Confidence 345677777765422 2468999999999999999999996 66 557877765321 12222 23457999999
Q ss_pred EEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChh
Q 016576 285 VMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPP 324 (387)
Q Consensus 285 IIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~ 324 (387)
||||||+|||.|+.++.+.|++.|+++|.+++ ++.++
T Consensus 96 LlVDDIiDTG~TL~~l~~~l~~~~~~~v~~av---L~~K~ 132 (178)
T PRK15423 96 LIVEDIIDSGNTLSKVREILSLREPKSLAICT---LLDKP 132 (178)
T ss_pred EEEeeecCchHHHHHHHHHHHhCCCCEEEEEE---EEECC
Confidence 99999999999999999999999999999998 55554
No 41
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.40 E-value=4.5e-12 Score=114.58 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=82.3
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCC-----------eeEEEeee--cCCCCCEE
Q 016576 218 ILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHN-----------VAEVMNLI--GDVKGKVA 284 (387)
Q Consensus 218 la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~-----------~~e~~~l~--gdV~Gk~V 284 (387)
+++.+.++..+.+..+|++++.+|+.+|..+++.|+ +|+..++|++.... ..+.+.+. ...+||+|
T Consensus 34 ~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~-~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V 112 (169)
T TIGR01090 34 LIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLG-VGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRV 112 (169)
T ss_pred HHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHC-CCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEE
Confidence 444444443233456999999999999999999996 99887776543111 00112221 13599999
Q ss_pred EEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhc
Q 016576 285 VMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS 331 (387)
Q Consensus 285 IIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~ 331 (387)
|||||+++||+|+.++++.|+++||+.|.+++.-..-..++.+.+.+
T Consensus 113 LIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~ 159 (169)
T TIGR01090 113 LIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEP 159 (169)
T ss_pred EEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccChHHHhcc
Confidence 99999999999999999999999999999888655544456777754
No 42
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.39 E-value=4.4e-12 Score=118.44 Aligned_cols=114 Identities=23% Similarity=0.317 Sum_probs=95.7
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCe--eE-EEeeecCCCCCEEEEEecccCchHHHHHHHHHHHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV--AE-VMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQ 306 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~--~e-~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~ 306 (387)
+++++|+...||..++..+.+.++.+++.++.++|+.... .. ...+..+++||+|||||||++||+|+..+++.|++
T Consensus 68 ~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 147 (207)
T TIGR01091 68 KKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKK 147 (207)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHH
Confidence 4689999999999999999999976788888888864321 11 23566789999999999999999999999999999
Q ss_pred cCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCC
Q 016576 307 EGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 345 (387)
Q Consensus 307 ~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~ 345 (387)
.|+++|.+++. +.++.+++++.+...+--++|-.|..
T Consensus 148 ~G~~~I~v~~l--l~~~~gl~~l~~~~p~v~i~~~~id~ 184 (207)
T TIGR01091 148 RGAKKIKVLSI--VAAPEGIEAVEKAHPDVDIYTAAIDE 184 (207)
T ss_pred cCCCEEEEEEE--ecCHHHHHHHHHHCCCCEEEEEEECC
Confidence 99999999996 88999999998766666666766654
No 43
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.34 E-value=8.1e-12 Score=113.72 Aligned_cols=103 Identities=25% Similarity=0.336 Sum_probs=76.6
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcC---CC--CEEEEEEe--ecCC---Ce-eEE--EeeecCCCC
Q 016576 215 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLS---DA--PLAIVDKR--RQGH---NV-AEV--MNLIGDVKG 281 (387)
Q Consensus 215 ~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~---~~--~~~~v~K~--R~~~---~~-~e~--~~l~gdV~G 281 (387)
...+++++.+.+.+.+++++++++.||+.+|..+++.|+ +. ++.++++. |.+. +. ... ..+.++++|
T Consensus 16 i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~g 95 (176)
T PRK05205 16 LTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEG 95 (176)
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCCC
Confidence 455666666543233578999999999999999999994 23 35565543 3221 11 111 245568999
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcC-CcEEEEEEE
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEG-AREVYACST 317 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~G-A~~V~v~~t 317 (387)
|+|||||||+|||+|+.++++.|++.| +++|.+++.
T Consensus 96 r~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL 132 (176)
T PRK05205 96 KRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVL 132 (176)
T ss_pred CEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999999999999999999999999999 788988884
No 44
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=114.29 Aligned_cols=147 Identities=24% Similarity=0.317 Sum_probs=111.4
Q ss_pred ccchHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCC--------------C-e-------
Q 016576 212 VYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGH--------------N-V------- 269 (387)
Q Consensus 212 L~a~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~--------------~-~------- 269 (387)
-.+...|++.|.... +..+.+|.+...||++.|..+|+.|+ +|+.++-.+.-+. + .
T Consensus 8 ~dAGr~La~~l~~~~-~~~~~iVlaLpRGGvpva~evA~~lg-a~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~ 85 (220)
T COG1926 8 TDAGRKLAQELAALR-DLKDVIVLALPRGGVPVAFEVAQALG-APLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVV 85 (220)
T ss_pred HHHHHHHHHHHHhhc-cCCCcEEEEecCCCchHHHHHHHHhC-CCeeEEEEeecCCCCCchhceeeeccCCcEecchhhh
Confidence 346778888887652 24678999999999999999999996 8886554333211 0 0
Q ss_pred ------------------eEE---------EeeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCC
Q 016576 270 ------------------AEV---------MNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFS 322 (387)
Q Consensus 270 ------------------~e~---------~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs 322 (387)
.|+ .+-.-+++||+||||||-+.||.|+..|++.++++|+++|++++ |+++
T Consensus 86 ~~~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAV--PV~p 163 (220)
T COG1926 86 RSLGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV--PVAP 163 (220)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEc--ccCC
Confidence 000 01122679999999999999999999999999999999999999 8999
Q ss_pred hhHHHHHhcCCCCEEEEeCCCCCccc--CCCCCceEEehHHHH
Q 016576 323 PPAIERLSSGLFQEVIITNTIPVSER--NYFPQLTILSVANLL 363 (387)
Q Consensus 323 ~~A~e~L~~s~i~~IvvTnTi~~~~~--~~~~kl~vlsva~ll 363 (387)
.++.+.|+. ..|++||..+-..... ..|..++.+|-.+.+
T Consensus 164 ~~a~~~l~s-~~D~vvc~~~P~~F~AVg~~Y~dF~q~sdeEV~ 205 (220)
T COG1926 164 EDAAAELES-EADEVVCLYMPAPFEAVGEFYRDFRQVSDEEVR 205 (220)
T ss_pred HHHHHHHHh-hcCeEEEEcCCccHHHHHHHHHHHhhcCHHHHH
Confidence 999999974 6899999887544322 346667777766544
No 45
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.33 E-value=1.4e-11 Score=113.54 Aligned_cols=108 Identities=27% Similarity=0.368 Sum_probs=82.6
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCC---CE--EEEEEeecCCC-----eeEEE--eeecCCCCC
Q 016576 215 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDA---PL--AIVDKRRQGHN-----VAEVM--NLIGDVKGK 282 (387)
Q Consensus 215 ~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~---~~--~~v~K~R~~~~-----~~e~~--~l~gdV~Gk 282 (387)
...+|+.|.+.+ ...+++++++..||+.+|..+++.|+ . ++ .+++..+.+.+ ..+.. .+..+++||
T Consensus 21 i~~lA~~I~~~~-~~~~~vivgi~~Gg~~fa~~L~~~L~-~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk 98 (189)
T PLN02238 21 VAELAAQIASDY-AGKSPVVLGVATGAFMFLADLVRAIQ-PLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGK 98 (189)
T ss_pred HHHHHHHHHHHc-CCCCcEEEEEccCCHHHHHHHHHHhC-ccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCC
Confidence 345777777653 33568999999999999999999996 6 54 46665554321 12221 233578999
Q ss_pred EEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHH
Q 016576 283 VAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIE 327 (387)
Q Consensus 283 ~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e 327 (387)
+|+|||||+|||.|+.++++.|++.||++|.++| ++.++...
T Consensus 99 ~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~av---L~dK~~~r 140 (189)
T PLN02238 99 HVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCA---LLDKRARR 140 (189)
T ss_pred EEEEEecccchHHHHHHHHHHHHhCCCCEEEEEE---EEECCccc
Confidence 9999999999999999999999999999999998 66666433
No 46
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.32 E-value=1.4e-12 Score=123.31 Aligned_cols=146 Identities=24% Similarity=0.266 Sum_probs=93.3
Q ss_pred eEEEEeecCccccchh---hccCCccchHHHHHHHHHH-----------hCCCEEEEecCCchhc-ccccCcccccccch
Q 016576 151 NITAVIPYFGYARADR---KTQGRESIAAKLVANLITE-----------AGANRVLACDLHSGQS-MGYFDIPVDHVYGQ 215 (387)
Q Consensus 151 ~it~viPY~~YsRqDr---~~~~~e~isak~vA~lL~~-----------~G~d~VitvDlHs~~~-~g~F~ipvd~L~a~ 215 (387)
+..++.+|=+..|+-- |+. +..-.++.++++|.. ...|.|++|++|..+. ++-|| +.
T Consensus 63 ~~~a~~~Y~g~~r~lI~~~Ky~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfn-------q~ 134 (227)
T PRK11595 63 RLVFVSDYAPPLSGLIHQLKFS-RRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFN-------QS 134 (227)
T ss_pred heeeeeecccHHHHHHHHHHHC-ccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCC-------HH
Confidence 5667777877777643 333 445556666666632 1458899999999764 45577 67
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchH
Q 016576 216 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG 295 (387)
Q Consensus 216 ~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~ 295 (387)
.++++.+.+.. +. .++.+.+.+.+..+.+.+ +. .++|. .+....+.+.++++||+|+|||||+|||.
T Consensus 135 ~~la~~la~~~-~~------~~~~~~l~r~~~~~~q~~-l~----~~~R~-~n~~~~f~~~~~~~~~~vllvDDv~tTG~ 201 (227)
T PRK11595 135 DLLCRPLARWL-GC------DYDSEALTRTRATATQHF-LS----ARLRK-RNLKNAFRLELPVQGQHMAIVDDVVTTGS 201 (227)
T ss_pred HHHHHHHHHHH-CC------CCcccceEEecCCCCccc-CC----HHHHh-hhhhhhhccCCCCCCCEEEEEeeeecchH
Confidence 88888887653 11 112222223222222111 10 11221 12222334567899999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEEEE
Q 016576 296 TISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 296 Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
|+.++++.|+++|+++|++++.
T Consensus 202 Tl~~~~~~L~~~g~~~V~~~~l 223 (227)
T PRK11595 202 TVAEIAQLLLRNGAASVQVWCL 223 (227)
T ss_pred HHHHHHHHHHHcCCcEEEEEEE
Confidence 9999999999999999999983
No 47
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.32 E-value=4.4e-11 Score=110.33 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=89.6
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCC--e-e------------EEEeeec-CC-C
Q 016576 218 ILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHN--V-A------------EVMNLIG-DV-K 280 (387)
Q Consensus 218 la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~--~-~------------e~~~l~g-dV-~ 280 (387)
+++.+.+...+.+..+|++++.+|++.|..+|.+|+ +|+.+++|+.+.+. . . ..+.+.+ .+ +
T Consensus 38 i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~ 116 (189)
T PRK09219 38 IGKEFARRFKDEGITKILTIEASGIAPAVMAALALG-VPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSE 116 (189)
T ss_pred HHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCC
Confidence 334444333233445899999999999999999996 99999998865421 1 0 1122333 33 7
Q ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCC--CCEEEEeCCCCC
Q 016576 281 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGL--FQEVIITNTIPV 345 (387)
Q Consensus 281 Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~--i~~IvvTnTi~~ 345 (387)
|++|+||||+++||+|+.++++.++++||.-+.+++.-..-..++.+++.+.+ +..++....++.
T Consensus 117 G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~g~~~l~~~g~~~~sl~~~~~~~~ 183 (189)
T PRK09219 117 GDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEKGYRVESLARIASLEN 183 (189)
T ss_pred CCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCccHHHHHHhcCCcEEEEEEeeeccC
Confidence 99999999999999999999999999999988877743221224567775543 556666666554
No 48
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.30 E-value=4.7e-11 Score=110.29 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=91.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCC-----e----------eEEEeeecC-C
Q 016576 216 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHN-----V----------AEVMNLIGD-V 279 (387)
Q Consensus 216 ~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~-----~----------~e~~~l~gd-V 279 (387)
..+++.+.++..+.+-.+|++|+.+|++.|..+|..|+ +|+.+++|..+... . ...+.+.++ +
T Consensus 36 ~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l 114 (191)
T TIGR01744 36 QEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLG-VPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFL 114 (191)
T ss_pred HHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhC
Confidence 34445555543233445899999999999999999996 99999998864321 0 011233443 4
Q ss_pred -CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcC--CCCEEEEeCCCC
Q 016576 280 -KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSG--LFQEVIITNTIP 344 (387)
Q Consensus 280 -~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s--~i~~IvvTnTi~ 344 (387)
+|++|+||||+++||+|+.++++.++++||.-+.++|.-..-..++.++|.+. ++..++.-+.+.
T Consensus 115 ~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv~sL~~~~~l~ 182 (191)
T TIGR01744 115 SDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRVESLARIQSLE 182 (191)
T ss_pred CCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCCcEEEEEEEeeEe
Confidence 89999999999999999999999999999998888885433223467777653 455666555554
No 49
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.28 E-value=4.3e-11 Score=107.75 Aligned_cols=105 Identities=22% Similarity=0.358 Sum_probs=84.6
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCC--EEEEEEeecCCCe-----eEE-EeeecCCCCCEEEE
Q 016576 215 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAP--LAIVDKRRQGHNV-----AEV-MNLIGDVKGKVAVM 286 (387)
Q Consensus 215 ~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~--~~~v~K~R~~~~~-----~e~-~~l~gdV~Gk~VII 286 (387)
...++++|.+.+ ..+++++|+...|++.++..+.+++. .| +.++...+.+.++ .++ ..+..+++||+|+|
T Consensus 21 i~ela~~I~~~y-~g~~~~vv~iLkGs~~F~~dL~r~i~-~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLi 98 (178)
T COG0634 21 IKELAAQITEDY-GGKDPLVVGVLKGSFPFMADLIRAID-FPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLI 98 (178)
T ss_pred HHHHHHHHHHhh-CCCceEEEEEcccchhhHHHHHHhcC-CCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEE
Confidence 456777887764 45889999999999999999999985 54 4677666543322 222 24567899999999
Q ss_pred EecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChh
Q 016576 287 VDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPP 324 (387)
Q Consensus 287 VDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~ 324 (387)
||||+|||.||..+.+.|+..||+++.+++ ++.++
T Consensus 99 VeDIiDsG~TLs~i~~~l~~r~a~sv~i~t---LldK~ 133 (178)
T COG0634 99 VEDIIDSGLTLSKVRDLLKERGAKSVRIAT---LLDKP 133 (178)
T ss_pred EecccccChhHHHHHHHHHhCCCCeEEEEE---EeeCc
Confidence 999999999999999999999999999998 66554
No 50
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.15 E-value=1e-09 Score=104.76 Aligned_cols=112 Identities=25% Similarity=0.228 Sum_probs=80.2
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCC-------------eeEEEeee-cC-CCCC
Q 016576 218 ILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHN-------------VAEVMNLI-GD-VKGK 282 (387)
Q Consensus 218 la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~-------------~~e~~~l~-gd-V~Gk 282 (387)
+++.+.+.+.+.+..+|++++.+|+++|..+|..|+ +|+.+++|.++... ....+.+. .. .+|+
T Consensus 99 v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~-~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~ 177 (238)
T PRK08558 99 IAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFG-ADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGD 177 (238)
T ss_pred HHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHC-cCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcC
Confidence 344444443233346899999999999999999996 99999887653110 11112222 23 4899
Q ss_pred EEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhc
Q 016576 283 VAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS 331 (387)
Q Consensus 283 ~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~ 331 (387)
+|+||||+++||+|+..+++.++++||..+.+++.-..- ..+.+++.+
T Consensus 178 rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~-~~~~~~l~~ 225 (238)
T PRK08558 178 RVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVG-EVGIDRARE 225 (238)
T ss_pred EEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecC-chHHHHHhH
Confidence 999999999999999999999999999988888843432 234666653
No 51
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.14 E-value=6.9e-10 Score=102.16 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=82.7
Q ss_pred EEEeecCccccchh---hccCCccchHHHHHHHHHH----h---CCCEEEEecCCchhc-ccccCcccccccchHHHHHH
Q 016576 153 TAVIPYFGYARADR---KTQGRESIAAKLVANLITE----A---GANRVLACDLHSGQS-MGYFDIPVDHVYGQPVILDY 221 (387)
Q Consensus 153 t~viPY~~YsRqDr---~~~~~e~isak~vA~lL~~----~---G~d~VitvDlHs~~~-~g~F~ipvd~L~a~~~la~~ 221 (387)
.++..|-+..|+-- |+ .|+.--++.+|++|.. . ..|.|++|++|..+. ++.|| +..++++.
T Consensus 36 ~~~~~Y~~~~~~li~~~K~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfn-------q~~~la~~ 107 (190)
T TIGR00201 36 VSVYTYNEPLKELISRFKF-RGQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFN-------QADLLAQC 107 (190)
T ss_pred EEEEECchHHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCC-------HHHHHHHH
Confidence 34445555444432 33 2444445566665532 1 247899999999754 45577 67788888
Q ss_pred HHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeec-CCCCCEEEEEecccCchHHHHHH
Q 016576 222 LASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIG-DVKGKVAVMVDDMIDTAGTISKG 300 (387)
Q Consensus 222 L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~g-dV~Gk~VIIVDDIIdTG~Tl~~a 300 (387)
+.+......+.+ .+.+. ..+-+ + -.++|. .|....+.+.+ +++||+|+|||||+|||.|+.++
T Consensus 108 l~~~~~~~~~~l---------~r~~~-~~Q~~-l----~~~~R~-~n~~~~f~~~~~~~~~~~vllvDDV~TTGaTl~~~ 171 (190)
T TIGR00201 108 LSRWLFNYHNIV---------IRLNN-ETQSK-L----KATLRF-LNLENAFDLKNNSFQGRNIVLVDDVVTTGATLHEI 171 (190)
T ss_pred HHHHhCCCcceE---------EEecc-ccccc-C----CHHHHH-HHHhCcEEccCCCCCCCEEEEEeeeeccHHHHHHH
Confidence 865421111111 11111 00000 0 001111 01111233333 48899999999999999999999
Q ss_pred HHHHHHcCCcEEEEEEE
Q 016576 301 AALLHQEGAREVYACST 317 (387)
Q Consensus 301 a~~Lk~~GA~~V~v~~t 317 (387)
++.|+++||.+|++++.
T Consensus 172 ~~~L~~~Ga~~V~~~~l 188 (190)
T TIGR00201 172 ARLLLELGAASVQVWTL 188 (190)
T ss_pred HHHHHHcCCCEEEEEEE
Confidence 99999999999999983
No 52
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.13 E-value=4.2e-10 Score=105.40 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=80.5
Q ss_pred chHHHHHHHHhhcCC-----CCCeEEEecCCCchHHHHHHHHHcC--CCC--EEEEEEeecCC-----CeeEEE-eeecC
Q 016576 214 GQPVILDYLASKAIS-----SDDLVVVSPDVGGVARARAFAKKLS--DAP--LAIVDKRRQGH-----NVAEVM-NLIGD 278 (387)
Q Consensus 214 a~~~la~~L~~~~~~-----~~~~vVVspd~Ggv~rA~~lA~~L~--~~~--~~~v~K~R~~~-----~~~e~~-~l~gd 278 (387)
....+|++|.+.+.+ .+++++++...||+.+|..+++.|+ +.+ +.+++-.+.+. +..... .+..+
T Consensus 36 ~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~ 115 (211)
T PTZ00271 36 ATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDS 115 (211)
T ss_pred HHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCC
Confidence 345577777665321 2467899999999999999999985 234 45665444321 112222 34458
Q ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChh
Q 016576 279 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPP 324 (387)
Q Consensus 279 V~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~ 324 (387)
++||+|||||||+|||.|+.++.+.|++.|+++|..++ ++.+.
T Consensus 116 i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~av---L~dK~ 158 (211)
T PTZ00271 116 VENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVV---LLDKP 158 (211)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEE---EEEcc
Confidence 99999999999999999999999999999999999999 56664
No 53
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.12 E-value=1.1e-09 Score=105.83 Aligned_cols=124 Identities=23% Similarity=0.234 Sum_probs=89.5
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecC-CC-------------eeEEEeeec-CC-CC
Q 016576 218 ILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQG-HN-------------VAEVMNLIG-DV-KG 281 (387)
Q Consensus 218 la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~-~~-------------~~e~~~l~g-dV-~G 281 (387)
+++.+.+...+.+-.+|+++..+|++.|..+|..|+ +|+.+++|..+. .+ ..+.+.+.. .+ +|
T Consensus 116 ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~-vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G 194 (268)
T TIGR01743 116 IGKILASVFAEREIDAVMTVATKGIPLAYAVASVLN-VPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTG 194 (268)
T ss_pred HHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHC-CCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCc
Confidence 333344333233445999999999999999999996 999999987653 11 112233322 34 79
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCC
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 345 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~ 345 (387)
++|+||||+++||+|+.++++.++++||.-+.+++.-.. .+..+++.. .+..++..+.+..
T Consensus 195 ~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~--~~~~~~l~~-~~~SL~~~~~~~~ 255 (268)
T TIGR01743 195 SKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDN--EGVDEKLVD-DYMSLLTLSNINE 255 (268)
T ss_pred CEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEEC--CCChHHcCC-CceEEEEEeeccc
Confidence 999999999999999999999999999998888874332 234566644 5677777777754
No 54
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.12 E-value=2.9e-10 Score=107.63 Aligned_cols=143 Identities=22% Similarity=0.307 Sum_probs=90.6
Q ss_pred eEEEEeecCccccchh---hccCCccchHHHHHHHHHHh------CCCEEEEecCCchh-cccccCcccccccchHHHHH
Q 016576 151 NITAVIPYFGYARADR---KTQGRESIAAKLVANLITEA------GANRVLACDLHSGQ-SMGYFDIPVDHVYGQPVILD 220 (387)
Q Consensus 151 ~it~viPY~~YsRqDr---~~~~~e~isak~vA~lL~~~------G~d~VitvDlHs~~-~~g~F~ipvd~L~a~~~la~ 220 (387)
+...+-.|-+-.|+-. |++ ++..-++.+|++|... ..|.|++|++|..+ .+..|| +...+++
T Consensus 67 ~~~~~~~Y~~~l~~~i~~~Kf~-~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFN-------Q~~~la~ 138 (225)
T COG1040 67 RLRSLGSYNGPLRELISQLKFQ-GDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFN-------QSELLAR 138 (225)
T ss_pred eEEEEEEccHHHHHHHHHhhhC-CchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCC-------HHHHHHH
Confidence 4555566655555433 222 3444556666655432 45799999999765 567788 7888999
Q ss_pred HHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCC-CEEEEEecccCchHHHHH
Q 016576 221 YLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKG-KVAVMVDDMIDTAGTISK 299 (387)
Q Consensus 221 ~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~G-k~VIIVDDIIdTG~Tl~~ 299 (387)
.+...+ + ... ...+.+.-..+-+ . -.++|. .|....+.+.+.++. |+|+|||||+|||.|+.+
T Consensus 139 ~l~~~~-~--~~~-------~~~r~k~~~~q~~-l----~~~~rr-~nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~~ 202 (225)
T COG1040 139 ALARRL-G--KPI-------ALRRVKDTSPQQG-L----KALERR-RNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKE 202 (225)
T ss_pred HHHHHh-C--chH-------HHHHHhccccccc-c----chHHHH-HhccCCeecCCCCCCCCeEEEEecccccHHHHHH
Confidence 887653 1 111 2222222222211 1 112221 123334556666665 999999999999999999
Q ss_pred HHHHHHHcCCcEEEEEEE
Q 016576 300 GAALLHQEGAREVYACST 317 (387)
Q Consensus 300 aa~~Lk~~GA~~V~v~~t 317 (387)
+++.|+++||++|.+++.
T Consensus 203 ~~~~L~~~Ga~~v~~~~l 220 (225)
T COG1040 203 AAKLLREAGAKRVFVLTL 220 (225)
T ss_pred HHHHHHHcCCceEEEEEE
Confidence 999999999999999983
No 55
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.12 E-value=6.7e-10 Score=105.91 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=78.9
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCC----------CCE---EEEEEeecC--C--CeeEEE-eee
Q 016576 215 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSD----------APL---AIVDKRRQG--H--NVAEVM-NLI 276 (387)
Q Consensus 215 ~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~----------~~~---~~v~K~R~~--~--~~~e~~-~l~ 276 (387)
...+|.+|.+.+ ..+++++++...||+.++..+.+.|.. .+. .+++-.+.. . +...+. ...
T Consensus 67 I~~LA~~I~~dy-~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~~ 145 (241)
T PTZ00149 67 VEKLAYDIKQVY-GNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDDL 145 (241)
T ss_pred HHHHHHHHHHHc-CCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEecccc
Confidence 455777777653 457889999999999999999988851 123 555543321 1 112221 233
Q ss_pred cCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChh
Q 016576 277 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPP 324 (387)
Q Consensus 277 gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~ 324 (387)
.+++||+|||||||+|||.|+.++++.|++.|+++|.++| ++.+.
T Consensus 146 ~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~---L~~K~ 190 (241)
T PTZ00149 146 SCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIAT---LFEKR 190 (241)
T ss_pred cccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEE---EEecC
Confidence 4789999999999999999999999999999999999998 55444
No 56
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.10 E-value=2e-09 Score=102.40 Aligned_cols=127 Identities=22% Similarity=0.208 Sum_probs=86.2
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCC-EEEEEEeecC---C------------CeeEEEeee----
Q 016576 217 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAP-LAIVDKRRQG---H------------NVAEVMNLI---- 276 (387)
Q Consensus 217 ~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~-~~~v~K~R~~---~------------~~~e~~~l~---- 276 (387)
.+++.|.++....+..+||++..+|+..|..+|..|+ .+ +.-+.|.|+. . +..+.+.+.
T Consensus 71 ~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg-~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~ 149 (233)
T PRK06031 71 ALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLG-HTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRML 149 (233)
T ss_pred HHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHC-CCCceEEEEccccccccccccceeeeeccCccceEEeccccc
Confidence 4556666554333456999999999999999999996 43 2223332221 0 011111121
Q ss_pred cCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCC---CCEEEEeCCCCC
Q 016576 277 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGL---FQEVIITNTIPV 345 (387)
Q Consensus 277 gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~---i~~IvvTnTi~~ 345 (387)
..++||+|+||||+++||+|+.++++.|+++||+.+.+.+.-- -..+..++|.+.+ .+.++..-++|.
T Consensus 150 ~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~-~g~~~~~~l~~~~~~~~~~~~~~~~~p~ 220 (233)
T PRK06031 150 PLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAML-QSERWRESLAAAGPQWPARVVGVFATPI 220 (233)
T ss_pred ccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEE-ccccHHHHHHhcCCCcccceEEEeeccc
Confidence 2368999999999999999999999999999998766655322 2345677887655 467777777775
No 57
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.10 E-value=1.5e-09 Score=99.39 Aligned_cols=89 Identities=29% Similarity=0.338 Sum_probs=72.0
Q ss_pred CeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCe-----------eEEEeeecC-C-CCCEEEEEecccCchHHH
Q 016576 231 DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-----------AEVMNLIGD-V-KGKVAVMVDDMIDTAGTI 297 (387)
Q Consensus 231 ~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~-----------~e~~~l~gd-V-~Gk~VIIVDDIIdTG~Tl 297 (387)
-..||++..+|+..|..+|.+|+ +|+++++|.++.... .+.+.+..+ + +|++|+||||+++||+|+
T Consensus 54 id~Iv~iea~Gi~~a~~vA~~Lg-vp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~ 132 (179)
T COG0503 54 IDKIVTIEARGIPLAAAVALELG-VPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTA 132 (179)
T ss_pred CCEEEEEccccchhHHHHHHHhC-CCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHH
Confidence 45899999999999999999996 999999997753210 122233333 3 799999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEEccc
Q 016576 298 SKGAALLHQEGAREVYACSTHAV 320 (387)
Q Consensus 298 ~~aa~~Lk~~GA~~V~v~~tHgv 320 (387)
.+..+++.++|+.-+.+++.-..
T Consensus 133 ~a~~~Ll~~~ga~vvg~~~~ie~ 155 (179)
T COG0503 133 LALIELLEQAGAEVVGAAFVIEL 155 (179)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEc
Confidence 99999999999999888885333
No 58
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.08 E-value=1.3e-09 Score=113.50 Aligned_cols=138 Identities=28% Similarity=0.279 Sum_probs=95.5
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEE--EEEEeecC-C-----------CeeEE-Eeeec-CCC
Q 016576 217 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLA--IVDKRRQG-H-----------NVAEV-MNLIG-DVK 280 (387)
Q Consensus 217 ~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~--~v~K~R~~-~-----------~~~e~-~~l~g-dV~ 280 (387)
.+.+.|.+.. ..+..+||+...+|...|..+++.++ +|+. +++ .|.. . ...+. .+..+ .++
T Consensus 283 ~~g~~La~~~-~~~~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~lir-~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~ 359 (479)
T PRK09123 283 NIGRELARES-PVDADVVVPVPDSGVPAAIGYAQESG-IPFELGIIR-NHYVGRTFIQPTQQIRNLGVKLKHNANRAVIE 359 (479)
T ss_pred HHHHHHHHhC-CCCCeEEEEcCccHHHHHHHHHHhcC-CCeeheEEE-EeecCccccccccccccccEEEEecccccccC
Confidence 4556666543 23456889999999999999999996 8885 343 3321 0 01111 12223 379
Q ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE-----EcccCCh---hHHHHHhcCCCCEEEEeCCCCC-cccCCC
Q 016576 281 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS-----THAVFSP---PAIERLSSGLFQEVIITNTIPV-SERNYF 351 (387)
Q Consensus 281 Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~-----tHgvfs~---~A~e~L~~s~i~~IvvTnTi~~-~~~~~~ 351 (387)
||+|+||||+++||.|+.++++.|+++||++|++.+ +|+.|.+ ++.++|..+.. ++.. .+....
T Consensus 360 gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~~~~~-------~~~ei~~~iga 432 (479)
T PRK09123 360 GKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAATH-------SLEEMAEYIGA 432 (479)
T ss_pred CCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHHHcCC-------CHHHHHHHhCC
Confidence 999999999999999999999999999999999999 9999998 77777654321 1110 001123
Q ss_pred CCceEEehHHHHH
Q 016576 352 PQLTILSVANLLG 364 (387)
Q Consensus 352 ~kl~vlsva~lla 364 (387)
.-|..+|+..|+.
T Consensus 433 dsl~yls~~~l~~ 445 (479)
T PRK09123 433 DSLAFLSIDGLYR 445 (479)
T ss_pred CeEeccCHHHHHH
Confidence 4477888877654
No 59
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.07 E-value=5.1e-10 Score=100.37 Aligned_cols=87 Identities=32% Similarity=0.412 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCchHHHHHHHHHcCCCCEEEEE--EeecCCCee--EEE-eeecCCCCCEEEEEecccCchHHHHHHHHH
Q 016576 229 SDDLVVVSPDVGGVARARAFAKKLSDAPLAIVD--KRRQGHNVA--EVM-NLIGDVKGKVAVMVDDMIDTAGTISKGAAL 303 (387)
Q Consensus 229 ~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~--K~R~~~~~~--e~~-~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~ 303 (387)
.+-.+||+....|++.|.-+|..|+ .++++.+ |.|...+.. ..+ ..-+.|+||+|+||||+++||.|+.++++.
T Consensus 85 ~evDvVvGIa~sGvPlAtmvA~elg-~elaiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~ 163 (203)
T COG0856 85 FEVDVVVGIAISGVPLATMVAYELG-KELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVITTGSTIKETIEQ 163 (203)
T ss_pred ceeEEEEEEeecCccHHHHHHHHhC-CceEEEecccccccccCCcCceeecccccccCceEEEEecccccChhHHHHHHH
Confidence 4556999999999999999999996 8887654 445432211 111 334679999999999999999999999999
Q ss_pred HHHcCCcEEEEEE
Q 016576 304 LHQEGAREVYACS 316 (387)
Q Consensus 304 Lk~~GA~~V~v~~ 316 (387)
|++.|++-+.+.+
T Consensus 164 lke~g~kpv~v~V 176 (203)
T COG0856 164 LKEEGGKPVLVVV 176 (203)
T ss_pred HHHcCCCcEEEEE
Confidence 9999999888777
No 60
>PRK09213 pur operon repressor; Provisional
Probab=99.05 E-value=2.2e-09 Score=103.99 Aligned_cols=124 Identities=23% Similarity=0.251 Sum_probs=88.1
Q ss_pred HHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecC-CC-------------eeEEEeeec-CC-CC
Q 016576 218 ILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQG-HN-------------VAEVMNLIG-DV-KG 281 (387)
Q Consensus 218 la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~-~~-------------~~e~~~l~g-dV-~G 281 (387)
+++.+.+...+.+-.+|+++..+|+++|..+|..|+ +|+.+++|..+. .+ ..+.+.+.. .+ +|
T Consensus 118 i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~-vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G 196 (271)
T PRK09213 118 IGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLN-VPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEG 196 (271)
T ss_pred HHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHC-CCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCc
Confidence 333444333223345899999999999999999996 999999986642 11 111222222 34 79
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCC
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 345 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~ 345 (387)
++|+||||+++||+|+.++++.++++||.-+.+++.-..- +..+++.. .+..++..+.+..
T Consensus 197 ~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd~~--~~~~~l~~-~~~SL~~~~~vd~ 257 (271)
T PRK09213 197 SRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVETK--EPEERLVD-DYVSLLKLSEVDE 257 (271)
T ss_pred CEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEECC--CChhhcCC-ceEEEEEEehhcc
Confidence 9999999999999999999999999999988877743322 23455543 5677777777654
No 61
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.02 E-value=7.3e-10 Score=115.42 Aligned_cols=147 Identities=27% Similarity=0.270 Sum_probs=102.5
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeecCC-------------CeeEEEe-eecCCC
Q 016576 216 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQGH-------------NVAEVMN-LIGDVK 280 (387)
Q Consensus 216 ~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~~~-------------~~~e~~~-l~gdV~ 280 (387)
..+++.|.+... .+..+|++....|...|..+|+.++ +|+.. +.|.|... +....+. ..+.++
T Consensus 272 ~~lg~~La~~~~-~~~D~VvpVPnqa~~lA~~la~~lg-ip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~ 349 (484)
T PRK07272 272 KRMGKRLAQEFP-HDADIVIGVPNSSLSAASGYAEESG-LPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVK 349 (484)
T ss_pred HHHHHHHHhhcC-CCCCEEEEecHHHHHHHHHHHHHHC-CCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccC
Confidence 356666766532 2345777877888999999999996 88732 22332110 1111222 245689
Q ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCcc---cCCCCCceEE
Q 016576 281 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVSE---RNYFPQLTIL 357 (387)
Q Consensus 281 Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~~---~~~~~kl~vl 357 (387)
||+|+||||+++||.|+.++++.|+++||++|+++++||.+..++.--|.....++++..+. ...+ ....+-+.++
T Consensus 350 gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~-~~~ei~~~~~~dsl~~~ 428 (484)
T PRK07272 350 GKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANH-SVEEICDIIGADSLTYL 428 (484)
T ss_pred CCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCC-CHHHHHHHhCCCEEEEe
Confidence 99999999999999999999999999999999999999999988877765544555554433 1111 1235668899
Q ss_pred ehHHHHHH
Q 016576 358 SVANLLGE 365 (387)
Q Consensus 358 sva~lla~ 365 (387)
|+..++.-
T Consensus 429 ~~~~l~~~ 436 (484)
T PRK07272 429 SVDGLIES 436 (484)
T ss_pred cHHHHHHH
Confidence 99776543
No 62
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=98.99 E-value=2e-09 Score=111.13 Aligned_cols=101 Identities=27% Similarity=0.310 Sum_probs=71.5
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeecC------CC---e---eEEEeeecCCCCCE
Q 016576 217 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQG------HN---V---AEVMNLIGDVKGKV 283 (387)
Q Consensus 217 ~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~~------~~---~---~e~~~l~gdV~Gk~ 283 (387)
.+.+.|.+......+.++..||.|. ..|..+|+.++ +|+.. +.|.|.. .+ . .+...+.+.++||+
T Consensus 259 ~~G~~La~~~~~~~D~Vv~VPdsg~-~~A~~~a~~lg-ip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~ 336 (442)
T PRK08341 259 RMGVELARESPAEGDVVIAVPDSGR-TAALGFAHESG-IPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKR 336 (442)
T ss_pred HHHHHhhcccCCCCceEEEecCchH-HHHHHHHHHhC-CCchheEEEeccccccccCcCchhhhheeeecccccccCCCE
Confidence 4556666543222345555566654 79999999996 89863 5665521 00 0 01112355689999
Q ss_pred EEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc
Q 016576 284 AVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA 319 (387)
Q Consensus 284 VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 319 (387)
|+||||+|+||.|+.++++.|+++||++|++.+.-|
T Consensus 337 VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~sp 372 (442)
T PRK08341 337 VVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASP 372 (442)
T ss_pred EEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcCC
Confidence 999999999999999999999999999999987433
No 63
>PLN02440 amidophosphoribosyltransferase
Probab=98.99 E-value=3.4e-09 Score=110.57 Aligned_cols=99 Identities=27% Similarity=0.263 Sum_probs=72.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEE--EEEEeecC-C-----------CeeE-EEee-ecCC
Q 016576 216 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLA--IVDKRRQG-H-----------NVAE-VMNL-IGDV 279 (387)
Q Consensus 216 ~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~--~v~K~R~~-~-----------~~~e-~~~l-~gdV 279 (387)
..+++.|.+... .+..+||+...+|...|..+++.++ +|+. +++ .|.. . ...+ .... ...+
T Consensus 262 ~~~g~~La~~~~-~~~d~vvpVP~s~~~~A~~la~~lg-iP~~~~lvr-~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v 338 (479)
T PLN02440 262 LEFGEILATEIP-VDCDVVIPVPDSGRVAALGYAAKLG-VPFQQGLIR-SHYVGRTFIEPSQKIRDFSVKLKLNPVRSVL 338 (479)
T ss_pred HHHHHHHHHhcC-CCCCEEEEeCCcHHHHHHHHHHHhC-CCchhheEE-EeeccccccCcchhhhhhhheeeeecccccc
Confidence 446666666532 2344777777888999999999996 8875 333 3321 0 0001 1122 2568
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEE
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
+||+|+||||+++||.|+.++++.|+++||++|++++.
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~ 376 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIA 376 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 99999999999999999999999999999999999985
No 64
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.91 E-value=6.8e-09 Score=108.92 Aligned_cols=100 Identities=25% Similarity=0.285 Sum_probs=69.3
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeec-CCC------------eeEEEe-eecCCCC
Q 016576 217 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQ-GHN------------VAEVMN-LIGDVKG 281 (387)
Q Consensus 217 ~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~-~~~------------~~e~~~-l~gdV~G 281 (387)
.|++++.+.....+..+|++....+...|..+++.++ +|+.. +.|.|. +.. ....+. ....++|
T Consensus 280 ~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lg-ip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~g 358 (501)
T PRK09246 280 KLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILG-VPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKG 358 (501)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHC-CCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccC
Confidence 3444444332212234677777778999999999996 88742 222221 110 111222 2346899
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEE
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
|+|+||||+++||.|+.++++.|+++||++|++++.
T Consensus 359 K~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ 394 (501)
T PRK09246 359 KNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASA 394 (501)
T ss_pred CeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEE
Confidence 999999999999999999999999999999999986
No 65
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=98.85 E-value=1.5e-08 Score=89.93 Aligned_cols=121 Identities=20% Similarity=0.221 Sum_probs=91.0
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCee-------E----EEe-eecCC-CC
Q 016576 215 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVA-------E----VMN-LIGDV-KG 281 (387)
Q Consensus 215 ~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~-------e----~~~-l~gdV-~G 281 (387)
..++++++++.. +..-.+|++.+..|..+.-.+|..+| +.++-++|..+-.+.. + .++ -.|-+ .|
T Consensus 45 idlf~~h~~~~~-~~~Id~iaGlEaRGFLFGP~iAlalG-~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g 122 (183)
T KOG1712|consen 45 IDLFVDHYRETF-EMKIDVIAGLEARGFLFGPSIALALG-AGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPG 122 (183)
T ss_pred HHHHHHHHHHHh-cCcceEEEeeeecceecCcHHHHHhC-CCeeecccCCCCCCceeEEEEeeecCccceeeeccccCCC
Confidence 345666666542 33456999999999999999999996 8999898876543321 0 011 13456 58
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEE
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEV 337 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~I 337 (387)
.+|+||||++.||||+.+|.+.+.+.||.-+-+.|.-.+-.-...++|..-++-.+
T Consensus 123 ~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~LkGr~kL~~~pl~~L 178 (183)
T KOG1712|consen 123 QRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPELKGREKLKGKPLFSL 178 (183)
T ss_pred CeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccccCCccccCCCccEEE
Confidence 99999999999999999999999999999999999877766566778765344333
No 66
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.84 E-value=1.3e-08 Score=105.28 Aligned_cols=139 Identities=24% Similarity=0.230 Sum_probs=89.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeecC-C-----C-------eeEEE-eeecCCC
Q 016576 216 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQG-H-----N-------VAEVM-NLIGDVK 280 (387)
Q Consensus 216 ~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~~-~-----~-------~~e~~-~l~gdV~ 280 (387)
..+++.|++.. ..+..+||+....|...|..+|+.++ +|+.. +.|.|.. . . ....+ ...+.++
T Consensus 260 ~~~g~~La~~~-~~~~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~ 337 (442)
T TIGR01134 260 KRMGEKLARES-PVEADVVIPVPDSGRSAALGFAQASG-IPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFR 337 (442)
T ss_pred HHHHHHHHHhc-CCCCEEEEEccCCHHHHHHHHHHHhC-CCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCC
Confidence 34667776653 23445666666668999999999996 88853 3333321 0 0 00112 2345689
Q ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEE---------cccCChhHHHHHhcCCCCEEEEeCCCCC-cccCC
Q 016576 281 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACST---------HAVFSPPAIERLSSGLFQEVIITNTIPV-SERNY 350 (387)
Q Consensus 281 Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t---------Hgvfs~~A~e~L~~s~i~~IvvTnTi~~-~~~~~ 350 (387)
||+|+||||+++||.|+.++++.|+++||++|++++. .|+..+.--|.+... -++.. .+...
T Consensus 338 gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~~--------~~~~~i~~~~~ 409 (442)
T TIGR01134 338 GKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANG--------RTVEEIAKEIG 409 (442)
T ss_pred CCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhcC--------CCHHHHHHHhC
Confidence 9999999999999999999999999999999998875 335444444444321 11110 00112
Q ss_pred CCCceEEehHHHHH
Q 016576 351 FPQLTILSVANLLG 364 (387)
Q Consensus 351 ~~kl~vlsva~lla 364 (387)
.+-+.++++..++.
T Consensus 410 ~~~l~~~~~~~l~~ 423 (442)
T TIGR01134 410 ADSLAYLSLEGLKE 423 (442)
T ss_pred CCEEEEecHHHHHH
Confidence 45688889877654
No 67
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.82 E-value=2.4e-08 Score=104.43 Aligned_cols=99 Identities=25% Similarity=0.242 Sum_probs=72.8
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeecC-C-----C-------eeEEE-eeecCCC
Q 016576 216 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQG-H-----N-------VAEVM-NLIGDVK 280 (387)
Q Consensus 216 ~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~~-~-----~-------~~e~~-~l~gdV~ 280 (387)
..++++|.+.. ..+..+||++...|...|..+|+.++ +|+.. +.|.|.. . . ....+ .+...++
T Consensus 299 ~~~G~~La~~~-~~~~DvVv~VP~sg~~~A~g~A~~lg-ip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~ 376 (500)
T PRK07349 299 QRLGQQLAKES-PVDADLVIGVPDSGIPAAIGFSQASG-IPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLA 376 (500)
T ss_pred HHHHHHHhhhc-ccCCcEEEEeccccHHHHHHHHHHHC-CCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccC
Confidence 45777776543 23445888888889999999999996 88852 3333321 0 0 00111 2234579
Q ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE
Q 016576 281 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 281 Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
||+|+||||+|+||.|+.++++.|+++||++|++..
T Consensus 377 gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i 412 (500)
T PRK07349 377 GKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRI 412 (500)
T ss_pred CCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEe
Confidence 999999999999999999999999999999999874
No 68
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.82 E-value=1.5e-08 Score=105.37 Aligned_cols=101 Identities=27% Similarity=0.293 Sum_probs=73.5
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeec-CC------------CeeEEEee-ecCCCC
Q 016576 217 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQ-GH------------NVAEVMNL-IGDVKG 281 (387)
Q Consensus 217 ~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~-~~------------~~~e~~~l-~gdV~G 281 (387)
.+.+.|++... .+..+|++....|...|..+|+.++ +|+.. +.|+|. +. +....+.. ...++|
T Consensus 271 ~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~g-ip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~g 348 (471)
T PRK06781 271 NMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEG 348 (471)
T ss_pred HHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhC-CCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCC
Confidence 46666766532 2344777777788999999999996 88853 333332 11 01112332 445799
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA 319 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 319 (387)
|+|+||||+++||.|+.++++.|+++||++|++..+-|
T Consensus 349 k~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sP 386 (471)
T PRK06781 349 KRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASP 386 (471)
T ss_pred ceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCC
Confidence 99999999999999999999999999999999998654
No 69
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.80 E-value=3.9e-08 Score=88.07 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=60.8
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEE-EEEEeec---CCCeeEEEeeecCCCCCEEEEEecc
Q 016576 215 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLA-IVDKRRQ---GHNVAEVMNLIGDVKGKVAVMVDDM 290 (387)
Q Consensus 215 ~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~-~v~K~R~---~~~~~e~~~l~gdV~Gk~VIIVDDI 290 (387)
...+++.+.+. .+..++|++..||+..|..++.+|+ .+.. ++.-.+. ..+..+... .-..+||+||||||+
T Consensus 19 i~~la~~I~~~---~~~d~vvgv~~GG~~fa~~L~~~L~-~~~v~~i~~ssY~~~~~~~~~~~~-~~~~~gk~VLIVDDI 93 (156)
T PRK09177 19 ARALAWRLLPA---GQWKGIIAVTRGGLVPAAILARELG-IRLVDTVCISSYDHDNQGELKVLK-RAEGDGEGFLVVDDL 93 (156)
T ss_pred HHHHHHHHHhh---CCCCEEEEEecCCeehHHHHHHHcC-CCceeEEEEEEECCCcCCcEEEec-CCCcCcCEEEEEeee
Confidence 34455555443 2357999999999999999999996 7753 3332221 112222211 114699999999999
Q ss_pred cCchHHHHHHHHHHHH
Q 016576 291 IDTAGTISKGAALLHQ 306 (387)
Q Consensus 291 IdTG~Tl~~aa~~Lk~ 306 (387)
+|||+|+.++.+.+++
T Consensus 94 iDTG~Tl~~v~~~l~~ 109 (156)
T PRK09177 94 VDTGGTARAVREMYPK 109 (156)
T ss_pred eCCHHHHHHHHHHHhh
Confidence 9999999999999974
No 70
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.77 E-value=2.6e-08 Score=103.69 Aligned_cols=101 Identities=28% Similarity=0.313 Sum_probs=72.8
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeec-CCC------------eeEEEe-eecCCCC
Q 016576 217 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQ-GHN------------VAEVMN-LIGDVKG 281 (387)
Q Consensus 217 ~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~-~~~------------~~e~~~-l~gdV~G 281 (387)
.+.+.|++.. ..+..+|++....|...|..+|+.++ +|+.. +.|+|. +.. ....+. ..+.++|
T Consensus 271 ~~G~~La~~~-~~~~D~VvpVP~s~~~~A~gla~~~g-ip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~g 348 (475)
T PRK07631 271 NLGKRLALEA-PVEADVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEG 348 (475)
T ss_pred HHHHHHHhhC-CCCCcEEEEechhHHHHHHHHHHHHC-CCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCC
Confidence 4666666643 23445777766678899999999996 88853 333332 110 011222 2456799
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA 319 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 319 (387)
|+|+||||+++||.|+.++++.|+++||++|++..+-|
T Consensus 349 k~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sP 386 (475)
T PRK07631 349 KRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSP 386 (475)
T ss_pred ceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence 99999999999999999999999999999999987644
No 71
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.68 E-value=1.7e-07 Score=97.72 Aligned_cols=101 Identities=24% Similarity=0.239 Sum_probs=69.2
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeecCC------C------eeEE-Ee-eecCCCC
Q 016576 217 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQGH------N------VAEV-MN-LIGDVKG 281 (387)
Q Consensus 217 ~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~~~------~------~~e~-~~-l~gdV~G 281 (387)
.+.+.|.+... .+..+||+....+...|..+|+.++ +|+.. +.|.|... . ..+. ++ ..+.++|
T Consensus 279 ~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~g-ip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~g 356 (474)
T PRK06388 279 RMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASG-IPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISG 356 (474)
T ss_pred HHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhC-CCchhheEEecccCCcccCCchhhhhhceeEEeccccccccC
Confidence 35666665432 2334566655556778999999996 88743 33433211 0 0111 11 2235789
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA 319 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 319 (387)
|+|+||||+++||.|+.++++.|+++||++|++..+-|
T Consensus 357 k~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sP 394 (474)
T PRK06388 357 KRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSP 394 (474)
T ss_pred ceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 99999999999999999999999999999999886544
No 72
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=98.67 E-value=1.6e-07 Score=87.89 Aligned_cols=114 Identities=21% Similarity=0.360 Sum_probs=92.5
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCe-eEE--EeeecCCCCCEEEEEecccCchHHHHHHHHHHHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-AEV--MNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQ 306 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~-~e~--~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~ 306 (387)
+++++|+...+|..+...+.+.+.++++..+.-+|+..+. ... .+++.++++++|||+|.|++||+|+.++++.|++
T Consensus 67 ~~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~ 146 (207)
T PF14681_consen 67 DKICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKE 146 (207)
T ss_dssp GCEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHH
T ss_pred ccEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHH
Confidence 4789999999999999999999988888888877765432 222 2677889999999999999999999999999999
Q ss_pred cCC--cEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCC
Q 016576 307 EGA--REVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 345 (387)
Q Consensus 307 ~GA--~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~ 345 (387)
+|+ ++|.+++. +-++.+++++.+...+--++|-.|..
T Consensus 147 ~G~~~~~I~~v~~--ias~~Gl~~l~~~~P~v~I~ta~iD~ 185 (207)
T PF14681_consen 147 HGVPEENIIIVSV--IASPEGLERLLKAFPDVRIYTAAIDP 185 (207)
T ss_dssp TTG-GGEEEEEEE--EEEHHHHHHHHHHSTTSEEEEEEEES
T ss_pred cCCCcceEEEEEE--EecHHHHHHHHHhCCCeEEEEEEEcc
Confidence 987 68888885 55788999998765676677777754
No 73
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.67 E-value=2e-07 Score=86.73 Aligned_cols=114 Identities=20% Similarity=0.307 Sum_probs=96.3
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEE---EeeecCCCCCEEEEEecccCchHHHHHHHHHHHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEV---MNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQ 306 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~---~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~ 306 (387)
.++++|+.-..|+.....+.+.+..+.+..+.-+|+.+...-. ..++.++++|.|+|+|-|+.||+|+..|++.|++
T Consensus 70 ~~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~ 149 (210)
T COG0035 70 KKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKK 149 (210)
T ss_pred CcEEEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHHH
Confidence 3489999999999999999999877888888888875432111 1456689999999999999999999999999999
Q ss_pred c-CCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCC
Q 016576 307 E-GAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 345 (387)
Q Consensus 307 ~-GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~ 345 (387)
. |+++|.++|. +-++.+++++.+...+--++|-.|..
T Consensus 150 ~G~~~~I~~v~~--vAapeGi~~v~~~~p~v~I~ta~iD~ 187 (210)
T COG0035 150 RGGPKNIKVVSL--VAAPEGIKAVEKAHPDVEIYTAAIDE 187 (210)
T ss_pred hCCCceEEEEEE--EecHHHHHHHHHhCCCCeEEEEEecc
Confidence 9 9999999985 66889999999877787788888764
No 74
>PLN02541 uracil phosphoribosyltransferase
Probab=98.66 E-value=2.4e-07 Score=88.72 Aligned_cols=113 Identities=21% Similarity=0.250 Sum_probs=89.4
Q ss_pred CeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCe-eEE--EeeecCCC-CCEEEEEecccCchHHHHHHHHHHHH
Q 016576 231 DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-AEV--MNLIGDVK-GKVAVMVDDMIDTAGTISKGAALLHQ 306 (387)
Q Consensus 231 ~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~-~e~--~~l~gdV~-Gk~VIIVDDIIdTG~Tl~~aa~~Lk~ 306 (387)
++++|+.-..|..+...+.+.+.++....+.-+|+..+. ... ..++.++. +++|||+|||+.||+|+..|++.|++
T Consensus 103 ~i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~ 182 (244)
T PLN02541 103 PVAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVS 182 (244)
T ss_pred cEEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHH
Confidence 489999999999999999888877777777777764321 111 14556675 78999999999999999999999999
Q ss_pred cCCc--EEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCC
Q 016576 307 EGAR--EVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 345 (387)
Q Consensus 307 ~GA~--~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~ 345 (387)
+|+. +|.+++. +-++.+++++.+...+--++|-.|..
T Consensus 183 ~Gv~~~~I~~v~~--ias~~Gl~~i~~~fP~v~I~ta~ID~ 221 (244)
T PLN02541 183 RGASVEQIRVVCA--VAAPPALKKLSEKFPGLHVYAGIIDE 221 (244)
T ss_pred cCCCcccEEEEEE--EECHHHHHHHHHHCcCCEEEEEEECc
Confidence 9998 7777774 66889999998766666667767754
No 75
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.65 E-value=1.1e-07 Score=87.76 Aligned_cols=97 Identities=24% Similarity=0.297 Sum_probs=69.2
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCC-----CeeEEE-eeecC-CCCCEEEEE
Q 016576 215 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGH-----NVAEVM-NLIGD-VKGKVAVMV 287 (387)
Q Consensus 215 ~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~-----~~~e~~-~l~gd-V~Gk~VIIV 287 (387)
...+|+.|.+. ++...+++++..||+..|+.++..|+-.++..+.-..-.. +...+. ...-+ +.||+||||
T Consensus 16 ~~~lA~kI~~s--~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIV 93 (192)
T COG2236 16 CRALAEKIRAS--GFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIV 93 (192)
T ss_pred HHHHHHHHHHc--CCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEE
Confidence 45567777654 3567799999999999999999999733665554332111 111111 12225 899999999
Q ss_pred ecccCchHHHHHHHHHHHHcCCcEEE
Q 016576 288 DDMIDTAGTISKGAALLHQEGAREVY 313 (387)
Q Consensus 288 DDIIdTG~Tl~~aa~~Lk~~GA~~V~ 313 (387)
|||.|||.||..|.+.|++.....+.
T Consensus 94 DDI~DTG~Tl~~a~~~l~~~~p~e~r 119 (192)
T COG2236 94 DDIVDTGETLELALEELKKLAPAEVR 119 (192)
T ss_pred ecccCchHhHHHHHHHHHhhCchhhh
Confidence 99999999999999999985444443
No 76
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.54 E-value=4.1e-07 Score=95.56 Aligned_cols=101 Identities=23% Similarity=0.231 Sum_probs=69.3
Q ss_pred HHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeecC--------CCe---eEEEe---eecCCCC
Q 016576 217 VILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQG--------HNV---AEVMN---LIGDVKG 281 (387)
Q Consensus 217 ~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~~--------~~~---~e~~~---l~gdV~G 281 (387)
.+.+.|.+... .+..+|++....|..-|..+|+.++ +|+.. +.|.|.. .+. ...+. +...++|
T Consensus 290 ~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~g-ip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~g 367 (510)
T PRK07847 290 EIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESG-IPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRG 367 (510)
T ss_pred HHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhC-CChhhceEeecccccCccCcchhhhhhceeeecCccccccCC
Confidence 46666766532 2344666644457999999999996 88743 3333210 000 00111 1234799
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA 319 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 319 (387)
|+||||||+++||.|+.++++.|+++||++|++...-|
T Consensus 368 k~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~sP 405 (510)
T PRK07847 368 KRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISSP 405 (510)
T ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 99999999999999999999999999999999886433
No 77
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.54 E-value=2.6e-06 Score=84.27 Aligned_cols=134 Identities=17% Similarity=0.189 Sum_probs=102.7
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCceeceEEeec-CCCcEEEE-eCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcC
Q 016576 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRF-ADGEIYVQ-LQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRAS 148 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F-~DGE~~v~-i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~ 148 (387)
+.+=.......+|..+|+.||+++..+...++ ++||..+. +.++++|++|+||..+..+.. .++..++++++.|
T Consensus 162 viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~----Tl~~a~~~l~~~g 237 (308)
T TIGR01251 162 VVVSPDAGGVERAKKVADALGCPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGG----TIAKAAEILKSAG 237 (308)
T ss_pred EEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHH----HHHHHHHHHHhcC
Confidence 44444556678999999999999999999999 88886655 356899999999998876643 5778889999999
Q ss_pred CCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhh
Q 016576 149 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASK 225 (387)
Q Consensus 149 a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~ 225 (387)
|++|.++.+.-- ..++ .+.+ |.+.|+++|++.|.|... .+|+ +...++..+++++.|.+.
T Consensus 238 a~~v~~~~th~v--------~~~~-----a~~~-l~~~~~~~iv~tdt~~~~--~~~~-~~~~v~va~~la~~i~~~ 297 (308)
T TIGR01251 238 AKRVIAAATHGV--------FSGP-----AIER-IANAGVEEVIVTNTIPHE--KHKP-KVSVISVAPLIAEAIRRI 297 (308)
T ss_pred CCEEEEEEEeee--------cCcH-----HHHH-HHhCCCCEEEEeCCCCcc--ccCC-CcEEEEhHHHHHHHHHHH
Confidence 999999998410 0111 2233 445689999999999764 3454 677788889999999765
No 78
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.47 E-value=5.4e-07 Score=80.90 Aligned_cols=106 Identities=14% Similarity=0.273 Sum_probs=76.0
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCC------CC--EEEEEEee--cCC--CeeEEE--eeecCCCC
Q 016576 216 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSD------AP--LAIVDKRR--QGH--NVAEVM--NLIGDVKG 281 (387)
Q Consensus 216 ~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~------~~--~~~v~K~R--~~~--~~~e~~--~l~gdV~G 281 (387)
+.+|+-+.+. .+..++++++...||-++-..+.+.|.+ .| +.+++-+. .+. +.++++ ....+++|
T Consensus 47 ~rlakDi~~~-~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~ltg 125 (216)
T KOG3367|consen 47 ERLAKDIMKE-IGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLTG 125 (216)
T ss_pred HHhhhhhhhc-cCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHhcC
Confidence 4455555444 2556789999999999999998888643 33 34554332 221 222222 11225799
Q ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhH
Q 016576 282 KVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPA 325 (387)
Q Consensus 282 k~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A 325 (387)
|+|+|||||++||.||......+++.+++.|.++. ++++..
T Consensus 126 K~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vas---LL~Krt 166 (216)
T KOG3367|consen 126 KNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVAS---LLVKRT 166 (216)
T ss_pred CcEEEEEeeccccchHHHHHHHHHhcCccceeeee---eccccc
Confidence 99999999999999999999999999999999998 666653
No 79
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.47 E-value=9.3e-07 Score=78.96 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=76.4
Q ss_pred hHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcC-----CCCEEEEEE--eecCCC-------eeEEEeeecCCC
Q 016576 215 QPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLS-----DAPLAIVDK--RRQGHN-------VAEVMNLIGDVK 280 (387)
Q Consensus 215 ~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~-----~~~~~~v~K--~R~~~~-------~~e~~~l~gdV~ 280 (387)
..-++..|.++..+.++++++|.-.+|+..|..+++++. .+|+..++- .|+.-. ......+..++.
T Consensus 16 itRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~ 95 (179)
T COG2065 16 ITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDIT 95 (179)
T ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCccCCcccCccCccccc
Confidence 444666777765567799999999999999999999874 245655542 343211 111124556899
Q ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCc-EEEEEE
Q 016576 281 GKVAVMVDDMIDTAGTISKGAALLHQEGAR-EVYACS 316 (387)
Q Consensus 281 Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~-~V~v~~ 316 (387)
||+||||||++-||.|+.+|.+.|.+.|-- +|..+|
T Consensus 96 ~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~Lav 132 (179)
T COG2065 96 GKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAV 132 (179)
T ss_pred CCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEE
Confidence 999999999999999999999999999854 677776
No 80
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.07 E-value=9.7e-06 Score=82.89 Aligned_cols=100 Identities=26% Similarity=0.233 Sum_probs=73.2
Q ss_pred HHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeecCCC-------------eeEEE-eeecCCC
Q 016576 216 PVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQGHN-------------VAEVM-NLIGDVK 280 (387)
Q Consensus 216 ~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~~~~-------------~~e~~-~l~gdV~ 280 (387)
..+.+.|.++.. .+-.+|++....|..-|-.+|+.++ +|+.. +-|.|.-.. ....+ .+...++
T Consensus 270 ~~mG~~La~e~~-~eaDvVipVPDSg~~aAig~A~~sG-iPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~ 347 (470)
T COG0034 270 KRMGEKLAEEIP-VEADVVIPVPDSGRPAAIGYARASG-IPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVK 347 (470)
T ss_pred HHHHHHHHHhCC-ccccEEEecCCCChHHHHHHHHHhC-CchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhC
Confidence 346667766542 3345888878888999999999996 88742 234442110 00011 2345689
Q ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEE
Q 016576 281 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 281 Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
||+|+||||-|-.|.|..+.++.|+++||++|++...
T Consensus 348 GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 348 GKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred CCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec
Confidence 9999999999999999999999999999999998864
No 81
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00019 Score=72.02 Aligned_cols=84 Identities=30% Similarity=0.313 Sum_probs=61.6
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCEEE-EEEeecC-C-----C-------eeEEE-eeecCCCCCEEEEEecccCchHH
Q 016576 232 LVVVSPDVGGVARARAFAKKLSDAPLAI-VDKRRQG-H-----N-------VAEVM-NLIGDVKGKVAVMVDDMIDTAGT 296 (387)
Q Consensus 232 ~vVVspd~Ggv~rA~~lA~~L~~~~~~~-v~K~R~~-~-----~-------~~e~~-~l~gdV~Gk~VIIVDDIIdTG~T 296 (387)
.+|.+....|..-|-.+|.+.+ +|+.- +.|.|.- . + ....+ .+..+++||+|+||||-|--|.|
T Consensus 293 DvVi~VPdS~~~aAlgyA~~sG-~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRGtT 371 (474)
T KOG0572|consen 293 DVVIPVPDSGTTAALGYAAKSG-LPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRGTT 371 (474)
T ss_pred ceEEecCCchhHHHHHHHHHhC-CchhhhhhhcccccceecCccHHHHHhhhhhhcccchhhcCCceEEEEecceeccCc
Confidence 3555555556677889999986 88852 3344421 1 1 01112 34568899999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEE
Q 016576 297 ISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 297 l~~aa~~Lk~~GA~~V~v~~ 316 (387)
+...++.||++||++|+...
T Consensus 372 s~~IVkmlreaGAkeVh~ri 391 (474)
T KOG0572|consen 372 SSPIVKMLREAGAKEVHIRI 391 (474)
T ss_pred hHHHHHHHHHcCCcEEEEEe
Confidence 99999999999999999875
No 82
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.23 E-value=0.019 Score=57.52 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=95.3
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCc-hHH---HHHHHHHHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---ISKGAALLH 305 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdT-G~T---l~~aa~~Lk 305 (387)
.+..+++ -.+....|+.+|+.|+ .++.-+..+|-..++.. ..+..+|.|++|+||-.+... ... +.-.+..||
T Consensus 20 ~~~~i~~-g~~~~~la~~ia~~lg-~~l~~~~~~~FpDGE~~-v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr 96 (330)
T PRK02812 20 NRLRLFS-GSSNPALAQEVARYLG-MDLGPMIRKRFADGELY-VQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACR 96 (330)
T ss_pred CCEEEEE-CCCCHHHHHHHHHHhC-CCceeeEEEECCCCCEE-EEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHH
Confidence 3445554 5677889999999996 88877777776555433 356678999999999997543 233 455788999
Q ss_pred HcCCcEEEEEEEcc-------cC------ChhHHH-HHhcCCCCEEEEeCCCCCcccCCCC-CceEEehHHHHHHHHHHH
Q 016576 306 QEGAREVYACSTHA-------VF------SPPAIE-RLSSGLFQEVIITNTIPVSERNYFP-QLTILSVANLLGETIWRV 370 (387)
Q Consensus 306 ~~GA~~V~v~~tHg-------vf------s~~A~e-~L~~s~i~~IvvTnTi~~~~~~~~~-kl~vlsva~lla~~I~~~ 370 (387)
++||++|.++.-+- .| +-..+- .|+..++++|++-|-.-...+..++ .+..++-++.+++.|++.
T Consensus 97 ~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~~fF~ipv~nl~~~~~l~~~i~~~ 176 (330)
T PRK02812 97 RASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKAGADRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLASK 176 (330)
T ss_pred HhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHcCccCCCceeeeChHHHHHHHHhc
Confidence 99999999887321 11 111222 3444589999999886432223332 567889999999998653
No 83
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.05 E-value=0.021 Score=57.01 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=93.7
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCc----hHHHHHHHHHHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT----AGTISKGAALLH 305 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdT----G~Tl~~aa~~Lk 305 (387)
.+..+++ -.+.-..|+.+|+.|+ .++.-+..+|-..++.. ..+..++.|++|+||-.+... =--+.-.+++||
T Consensus 4 ~~~~i~~-~~~~~~la~~ia~~lg-~~l~~~~~~~FpdGE~~-v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr 80 (320)
T PRK02269 4 SDLKLFA-LSSNKELAEKVAQEIG-IELGKSSVRQFSDGEIQ-VNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALK 80 (320)
T ss_pred CCeEEEE-CCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEE-EEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHH
Confidence 3445554 4566789999999996 88887777776555433 356678999999999876532 233556789999
Q ss_pred HcCCcEEEEEEEcccCCh---------------hHHH-HHhcCCCCEEEEeCCCCCcccCCCC-CceEEehHHHHHHHHH
Q 016576 306 QEGAREVYACSTHAVFSP---------------PAIE-RLSSGLFQEVIITNTIPVSERNYFP-QLTILSVANLLGETIW 368 (387)
Q Consensus 306 ~~GA~~V~v~~tHgvfs~---------------~A~e-~L~~s~i~~IvvTnTi~~~~~~~~~-kl~vlsva~lla~~I~ 368 (387)
++||++|.++. |-|.. ..+- .|+..++++|++.|-.-..-+..++ ++..++..+++++.++
T Consensus 81 ~~~a~~i~~V~--PYl~YaRQDr~~~~~e~isak~~a~ll~~~g~d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~ 158 (320)
T PRK02269 81 RASAESINVVM--PYYGYARQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFD 158 (320)
T ss_pred HhCCCeEEEEE--eccccchhhcccCCCCCchHHHHHHHHhhcCCCEEEEECCChHHHhccccCCchhhhhHHHHHHHHH
Confidence 99999999888 33322 1222 2344589999999986432222333 4566889999999997
Q ss_pred HH
Q 016576 369 RV 370 (387)
Q Consensus 369 ~~ 370 (387)
+.
T Consensus 159 ~~ 160 (320)
T PRK02269 159 RR 160 (320)
T ss_pred Hh
Confidence 54
No 84
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.02 E-value=0.023 Score=55.74 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=87.5
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEe-CCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCC
Q 016576 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQL-QESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 149 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i-~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a 149 (387)
+.+-.......+|+.+|+.||++..-+.-.+...++..+.. ..+++|++|+||........ . +.-.+++||+.||
T Consensus 157 vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~TG~-T---l~~aa~~Lk~~GA 232 (285)
T PRK00934 157 LVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTEVEIAPKNLDVKGKDVLIVDDIISTGG-T---MATAIKILKEQGA 232 (285)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCeEEEeccccccCCCEEEEEcCccccHH-H---HHHHHHHHHHCCC
Confidence 44444556789999999999999887776666666655543 24689999999977654332 2 4566788999999
Q ss_pred CeEEEEee--cCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHH
Q 016576 150 KNITAVIP--YFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLA 223 (387)
Q Consensus 150 ~~it~viP--Y~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~ 223 (387)
++|.++.- .|.- ...+-|...|+++|++.|-+.. +...++-.+++++.|.
T Consensus 233 ~~V~~~~~H~i~~~----------------~a~~~l~~~~i~~i~~tnti~~--------~~~~~~va~~la~~i~ 284 (285)
T PRK00934 233 KKVYVACVHPVLVG----------------DAILKLYNAGVDEIIVTDTLES--------EVSKISVAPLIADLLK 284 (285)
T ss_pred CEEEEEEEeeccCc----------------HHHHHHHhCCCCEEEEcCCCCC--------CceEEEcHHHHHHHHh
Confidence 99998874 3331 1223345678999999997642 2335667788888774
No 85
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.02 E-value=0.03 Score=55.43 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=90.2
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEe--CCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcC
Q 016576 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQL--QESVRGCHVFLVQPSCPPANENIMELLVMIDACRRAS 148 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i--~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~ 148 (387)
+.+-.......+|+.+|+.||+++.-+.-.|..+++..+.. .++|+|++|+||......... +.-.+++||++|
T Consensus 163 vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~T----l~~aa~~Lk~~G 238 (301)
T PRK07199 163 LLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRT----LIEAARQLRAAG 238 (301)
T ss_pred EEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHH----HHHHHHHHHHCC
Confidence 44444555678999999999999987777777666555433 357899999999876554322 556778999999
Q ss_pred CCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhh
Q 016576 149 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASK 225 (387)
Q Consensus 149 a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~ 225 (387)
|++|.++.-.-= ++.. ..+.|...|+++|++-|-+. .|...++-.+++++.|.+.
T Consensus 239 A~~V~~~~tHgv-------------fs~~-a~~~l~~~~i~~iv~Tdti~--------~~~~~~sva~lla~~i~~~ 293 (301)
T PRK07199 239 AASPDCVVVHAL-------------FAGD-AYSALAAAGIARVVSTDTVP--------HPSNAISLAPLLAEALRRE 293 (301)
T ss_pred CcEEEEEEEeee-------------CChH-HHHHHHhCCCCEEEEeCCcc--------CCCCEEehHHHHHHHHHHH
Confidence 999998874421 1112 23335567899999988642 1233466789999998664
No 86
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.91 E-value=0.051 Score=54.38 Aligned_cols=136 Identities=13% Similarity=0.149 Sum_probs=93.4
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCc-hHH---HHHHHHHHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---ISKGAALLH 305 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdT-G~T---l~~aa~~Lk 305 (387)
++.++++ -.+....|..+|+.|+ .++..+..+|-..++.. ..+..++.|++|+||-.+... -.. +.-.++.|+
T Consensus 8 ~~~~i~~-~~~~~~la~~ia~~lg-~~l~~~~~~~FpdGE~~-v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr 84 (323)
T PRK02458 8 KQIKLFS-LNSNLEIAEKIAQAAG-VPLGKLSSRQFSDGEIM-INIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACK 84 (323)
T ss_pred CCeEEEE-CCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEE-EEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHH
Confidence 3444444 4566889999999996 89887777776555533 356678999999999876432 223 445678999
Q ss_pred HcCCcEEEEEEEcccCCh---------------hHHHH-HhcCCCCEEEEeCCCCCcccCCCC-CceEEehHHHHHHHHH
Q 016576 306 QEGAREVYACSTHAVFSP---------------PAIER-LSSGLFQEVIITNTIPVSERNYFP-QLTILSVANLLGETIW 368 (387)
Q Consensus 306 ~~GA~~V~v~~tHgvfs~---------------~A~e~-L~~s~i~~IvvTnTi~~~~~~~~~-kl~vlsva~lla~~I~ 368 (387)
++||++|.++. |-|.. ...-+ |+..++++|++-|-.-..-+..++ .+..++..+++++.++
T Consensus 85 ~~~a~~i~lVi--PYl~YaRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~i~~~F~~p~~nl~~~p~~~~~l~ 162 (323)
T PRK02458 85 RASANTVNVVL--PYFGYARQDRIAKPREPITAKLVANMLVKAGVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYC 162 (323)
T ss_pred HcCCceEEEEE--eccccchhhcccCCCCCchHHHHHHHHhhcCCCeEEEEecCcHHhhccccCCceEEEEHHHHHHHHH
Confidence 99999999888 33322 12222 344589999999876432222232 4678899999999997
Q ss_pred HH
Q 016576 369 RV 370 (387)
Q Consensus 369 ~~ 370 (387)
..
T Consensus 163 ~~ 164 (323)
T PRK02458 163 KK 164 (323)
T ss_pred Hh
Confidence 64
No 87
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.87 E-value=0.054 Score=54.42 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=92.2
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCc-hHH---HHHHHHHHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---ISKGAALLH 305 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdT-G~T---l~~aa~~Lk 305 (387)
.+..+++ -.+....|+.+|+.|+ .++.-+..+|-..++.. ..+..+|.|++|+||=++... ... +.-.+..|+
T Consensus 8 ~~~~i~~-~~~~~~La~~ia~~lg-~~l~~~~~~~FpdGE~~-v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr 84 (332)
T PRK00553 8 SNHVIFS-LSKAKKLVDSICRKLS-MKPGEIVIQKFADGETY-IRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALK 84 (332)
T ss_pred CCeEEEE-CCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEE-EEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHH
Confidence 4445554 3556789999999996 89887777776555543 356678999999999887643 222 455788999
Q ss_pred HcCCcEEEEEEEcccCCh---------------hHH-HHHhcCCCCEEEEeCCCCCcccCCCC-CceEEehHHHHHHHHH
Q 016576 306 QEGAREVYACSTHAVFSP---------------PAI-ERLSSGLFQEVIITNTIPVSERNYFP-QLTILSVANLLGETIW 368 (387)
Q Consensus 306 ~~GA~~V~v~~tHgvfs~---------------~A~-e~L~~s~i~~IvvTnTi~~~~~~~~~-kl~vlsva~lla~~I~ 368 (387)
++||++|.++. |-|.. ..+ +.|+..++++|++.|-.-..-+..++ ++.-++-.++|++.+.
T Consensus 85 ~~~a~~i~~Vi--PYl~YaRQDr~~~~~e~isak~vA~ll~~~g~d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~~ 162 (332)
T PRK00553 85 RGSAKSITAIL--PYYGYARQDRKTAGREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVL 162 (332)
T ss_pred HcCCCeEEEEe--eccccchhhcccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcCCCcceeechHHHHHHHH
Confidence 99999999887 33322 122 23445589999999876432222222 3556788889999886
Q ss_pred H
Q 016576 369 R 369 (387)
Q Consensus 369 ~ 369 (387)
.
T Consensus 163 ~ 163 (332)
T PRK00553 163 E 163 (332)
T ss_pred H
Confidence 4
No 88
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.84 E-value=0.034 Score=55.12 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=85.4
Q ss_pred HHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCc-hHH---HHHHHHHHHHcCCcEEEEEEEccc
Q 016576 245 ARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AGT---ISKGAALLHQEGAREVYACSTHAV 320 (387)
Q Consensus 245 A~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdT-G~T---l~~aa~~Lk~~GA~~V~v~~tHgv 320 (387)
|+.+|+.|+ .++.-+..+|-..++.. ..+..+|+|++|+||-..... ... +.-.+..||++||++|.++. |-
T Consensus 2 a~~ia~~l~-~~l~~~~~~~F~DGE~~-vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~Vi--PY 77 (304)
T PRK03092 2 AEEVAKELG-VEVTPTTAYDFANGEIY-VRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVL--PF 77 (304)
T ss_pred HHHHHHHhC-CceeeeEEEECCCCCEE-EEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEE--ec
Confidence 678899996 88887777776555432 356678999999999876643 222 45578999999999999887 32
Q ss_pred CCh---------------hH-HHHHhcCCCCEEEEeCCCCCcccCCCC-CceEEehHHHHHHHHHHH
Q 016576 321 FSP---------------PA-IERLSSGLFQEVIITNTIPVSERNYFP-QLTILSVANLLGETIWRV 370 (387)
Q Consensus 321 fs~---------------~A-~e~L~~s~i~~IvvTnTi~~~~~~~~~-kl~vlsva~lla~~I~~~ 370 (387)
|.. .. .+.|+..++++|++.|-....-+..++ .+.-++.+++|++.|+..
T Consensus 78 l~YaRQDr~~~~~e~isak~va~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~ 144 (304)
T PRK03092 78 YPYARQDKKHRGREPISARLVADLFKTAGADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDK 144 (304)
T ss_pred ccccccccccCCCCCccHHHHHHHHHhcCCCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHh
Confidence 222 12 233445589999999987432222232 467899999999999764
No 89
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.79 E-value=0.033 Score=57.80 Aligned_cols=137 Identities=11% Similarity=0.135 Sum_probs=93.1
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCc-hH---HHHHHHHHHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AG---TISKGAALLH 305 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdT-G~---Tl~~aa~~Lk 305 (387)
++.+|++ -.+....|..+|+.|+ +++.-+..+|-..++.. ..+..+|.|++|+||-++... -. -+.-.+++|+
T Consensus 118 ~~m~I~s-gs~~~~LA~~IA~~Lg-~~l~~~~~~rFpDGE~~-Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr 194 (439)
T PTZ00145 118 ENAILFS-GSSNPLLSKNIADHLG-TILGRVHLKRFADGEVS-MQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCR 194 (439)
T ss_pred CCeEEEE-CCCCHHHHHHHHHHhC-CCceeeEEEECCCCCEE-EEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHH
Confidence 4555554 4566889999999996 89888877776555543 256678999999999986543 22 2445788999
Q ss_pred HcCCcEEEEEEEcc-------cC------ChhHH-HHHhcCCCCEEEEeCCCCCcccCCCC---CceEEehHHHHHHHHH
Q 016576 306 QEGAREVYACSTHA-------VF------SPPAI-ERLSSGLFQEVIITNTIPVSERNYFP---QLTILSVANLLGETIW 368 (387)
Q Consensus 306 ~~GA~~V~v~~tHg-------vf------s~~A~-e~L~~s~i~~IvvTnTi~~~~~~~~~---kl~vlsva~lla~~I~ 368 (387)
++||++|.++.-+- .| +-..+ +.|+..+++.|++.|-....-+..++ .+.-++..+++++.|+
T Consensus 195 ~agAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~~fF~~~iPvdnl~a~~~~a~~i~ 274 (439)
T PTZ00145 195 RASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDYFT 274 (439)
T ss_pred HhccCeEEEEeecccchheecccCCCCChhHHHHHHHHHHcCCCeEEEEecChHHHHhhcCCCcccccccccHHHHHHHh
Confidence 99999999988321 11 11122 23445589999999876432222232 4556677888888886
Q ss_pred H
Q 016576 369 R 369 (387)
Q Consensus 369 ~ 369 (387)
.
T Consensus 275 ~ 275 (439)
T PTZ00145 275 K 275 (439)
T ss_pred h
Confidence 4
No 90
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=96.79 E-value=0.048 Score=54.15 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=95.0
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchH-H---HHHHHHHHHHc
Q 016576 232 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAG-T---ISKGAALLHQE 307 (387)
Q Consensus 232 ~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~-T---l~~aa~~Lk~~ 307 (387)
..+++. ...-.+|+.+|+.|+ .++.-+..+|-..++.. ..+..+|.|++|.|+........ . +.-.+++||++
T Consensus 5 ~~if~g-~s~~~La~~ia~~l~-~~l~~~~~~rF~DGE~~-V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~a 81 (314)
T COG0462 5 MKIFSG-SSNPELAEKIAKRLG-IPLGKVEVKRFPDGEIY-VRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRA 81 (314)
T ss_pred eEEEEC-CCCHHHHHHHHHHhC-CCcccceeEEcCCCcEE-EEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhc
Confidence 334433 556778999999996 88887777776555433 35677899999999998887444 3 34467899999
Q ss_pred CCcEEEEEEEcccCChh----------------HHHHHhcCCCCEEEEeCCCCCcccCCCC-CceEEehHHHHHHHHHHH
Q 016576 308 GAREVYACSTHAVFSPP----------------AIERLSSGLFQEVIITNTIPVSERNYFP-QLTILSVANLLGETIWRV 370 (387)
Q Consensus 308 GA~~V~v~~tHgvfs~~----------------A~e~L~~s~i~~IvvTnTi~~~~~~~~~-kl~vlsva~lla~~I~~~ 370 (387)
||++|.++. |-|... ..+.|...|+++|++.|-....-+..++ ++.-+.-.|+|++.++..
T Consensus 82 sA~~It~Vi--PY~gYARQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~ 159 (314)
T COG0462 82 SAKRITAVI--PYFGYARQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREK 159 (314)
T ss_pred CCceEEEEe--ecchhhccCcccCCCCCEeHHHHHHHHHHcCCCeEEEEcCCchhhcccCCCccccccchHHHHHHHHHh
Confidence 999999998 443321 1233455689999999987543333332 455667889999999876
Q ss_pred H
Q 016576 371 H 371 (387)
Q Consensus 371 ~ 371 (387)
.
T Consensus 160 ~ 160 (314)
T COG0462 160 Y 160 (314)
T ss_pred c
Confidence 4
No 91
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.75 E-value=0.052 Score=53.96 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=88.3
Q ss_pred CCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCc-hH---HHHHHHHHHHHcCCcEEE
Q 016576 238 DVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AG---TISKGAALLHQEGAREVY 313 (387)
Q Consensus 238 d~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdT-G~---Tl~~aa~~Lk~~GA~~V~ 313 (387)
-.+....|..+|+.|+ .++.-+..++-..++.. ..+..++.|++|+||=++... .. -+.-.++.|+++||++|.
T Consensus 6 ~~~~~~la~~ia~~lg-~~~~~~~~~~FpdGE~~-vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i~ 83 (309)
T PRK01259 6 GNANPELAEKIAKYLG-IPLGKASVGRFSDGEIS-VEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRIT 83 (309)
T ss_pred CCCCHHHHHHHHHHhC-CceeeeEEEECCCCCEE-EEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceEE
Confidence 3556789999999996 88877766665555432 355678999999999765322 22 245678999999999999
Q ss_pred EEEEcccCCh---------------hHH-HHHhcCCCCEEEEeCCCCCcccCCCC-CceEEehHHHHHHHHHHH
Q 016576 314 ACSTHAVFSP---------------PAI-ERLSSGLFQEVIITNTIPVSERNYFP-QLTILSVANLLGETIWRV 370 (387)
Q Consensus 314 v~~tHgvfs~---------------~A~-e~L~~s~i~~IvvTnTi~~~~~~~~~-kl~vlsva~lla~~I~~~ 370 (387)
++. |-|.. ..+ +.|+..++++|++-|-....-+..++ .+..++-.+++++.|++-
T Consensus 84 lVi--PYl~YsRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~ 155 (309)
T PRK01259 84 AVI--PYFGYARQDRKARSRVPITAKLVANLLETAGADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQK 155 (309)
T ss_pred EEe--eccccchhhhhhccCCCchHHHHHHHHhhcCCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhc
Confidence 887 33222 122 22344579999999887432222222 467788899999999753
No 92
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.59 E-value=0.073 Score=53.18 Aligned_cols=139 Identities=13% Similarity=0.108 Sum_probs=92.1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhC-CceeceEEeecCCCc-EEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHh
Q 016576 69 TRLRIFSGTANPALSQEISCYMG-LDLGKIKIKRFADGE-IYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRR 146 (387)
Q Consensus 69 ~~~~ifsg~~~~~La~~ia~~lg-~~l~~~~~~~F~DGE-~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~ 146 (387)
+.+.+-.-......|+.+|+.|| ++..-+.-.|..+++ ....+..+|+|++|+||......... |.-.+++||+
T Consensus 167 ~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~T----l~~aa~~Lk~ 242 (319)
T PRK04923 167 NLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGT----LCAAAAALKQ 242 (319)
T ss_pred CCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCchHH----HHHHHHHHHH
Confidence 33444445667799999999997 787766665654443 34456678999999999877654332 6667889999
Q ss_pred cCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhh
Q 016576 147 ASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASK 225 (387)
Q Consensus 147 ~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~ 225 (387)
+||++|.++.-.-=++ ...+-+ |...|+++|++-|-..........-+...++-.+++++.|...
T Consensus 243 ~GA~~V~~~~THgvfs-------------~~a~~~-l~~s~i~~iv~Tdtip~~~~~~~~~k~~~isva~lla~~i~~~ 307 (319)
T PRK04923 243 RGALKVVAYITHPVLS-------------GPAVDN-INNSQLDELVVTDTIPLSEAARACAKIRQLSVAELLAETIRRI 307 (319)
T ss_pred CCCCEEEEEEECcccC-------------chHHHH-HhhCCCCEEEEeCCccCchhhcccCCeEEEEhHHHHHHHHHHH
Confidence 9999999887652222 122233 3567999999988653111101111234566788999888664
No 93
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=96.31 E-value=0.098 Score=44.62 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=57.0
Q ss_pred EecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCc-hH---HHHHHHHHHHHcCCc
Q 016576 235 VSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT-AG---TISKGAALLHQEGAR 310 (387)
Q Consensus 235 Vspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdT-G~---Tl~~aa~~Lk~~GA~ 310 (387)
+-...+.-..|+.+++.|+ .++.-+.-+|-..++.. ..+.+++.|++|+||=++... -. -+.-.++++|+.||+
T Consensus 3 I~~g~~~~~La~~ia~~L~-~~~~~~~~~~F~dGE~~-v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 80 (116)
T PF13793_consen 3 IFSGSSSQDLAERIAEALG-IPLGKVETKRFPDGETY-VRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAK 80 (116)
T ss_dssp EEESSSGHHHHHHHHHHTT-S-EE-EEEEE-TTS-EE-EEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBS
T ss_pred EEECCCCHHHHHHHHHHhC-CceeeeEEEEcCCCCEE-EEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCc
Confidence 3345677889999999996 88887776665555443 356779999999999999875 12 345578999999999
Q ss_pred EEEEEEEcccCCh
Q 016576 311 EVYACSTHAVFSP 323 (387)
Q Consensus 311 ~V~v~~tHgvfs~ 323 (387)
+|.++. |-|..
T Consensus 81 ~i~~Vi--PYl~Y 91 (116)
T PF13793_consen 81 RITLVI--PYLPY 91 (116)
T ss_dssp EEEEEE--SS-TT
T ss_pred EEEEec--cchhh
Confidence 999998 66654
No 94
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=96.25 E-value=0.024 Score=52.43 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=68.7
Q ss_pred ccchHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCC-C--e-e-----------EEEeee
Q 016576 212 VYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGH-N--V-A-----------EVMNLI 276 (387)
Q Consensus 212 L~a~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~-~--~-~-----------e~~~l~ 276 (387)
+.....|++.+.+.+ .++.+++|-...+.-....+++.++. ...|++-.|..- + . . ......
T Consensus 37 ~~~~~~La~~~~~~~--~~~~lvIGfAETATgLG~~V~~~~~~-~~~ylhTTR~~v~~~~~~~~F~E~HSHAt~h~ly~~ 113 (191)
T PF15609_consen 37 RDAGRLLAAQVPEAL--PGPVLVIGFAETATGLGHGVFDALGA-ACLYLHTTREPVPGVPPLLEFEEEHSHATDHLLYPP 113 (191)
T ss_pred HHHHHHHHHHHHHhC--CCCeEEEEEhHHHHHHHHHHHHHhhh-ccceeeeccccCCCCccceeeeccccccccceecCC
Confidence 335566777776653 35678899888888889999998863 334676666421 1 0 0 001111
Q ss_pred -cC-C-CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEE
Q 016576 277 -GD-V-KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 277 -gd-V-~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
.+ + ..+.+|+|||=|+||.|+...++.|++.-..+=|++++
T Consensus 114 ~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvas 157 (191)
T PF15609_consen 114 DPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVAS 157 (191)
T ss_pred ChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEE
Confidence 11 2 46799999999999999999999999876665455443
No 95
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=96.24 E-value=0.19 Score=49.85 Aligned_cols=136 Identities=12% Similarity=0.109 Sum_probs=92.8
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHh-CCceeceEEeecCCCcE-EEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHH
Q 016576 69 TRLRIFS-GTANPALSQEISCYM-GLDLGKIKIKRFADGEI-YVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACR 145 (387)
Q Consensus 69 ~~~~ifs-g~~~~~La~~ia~~l-g~~l~~~~~~~F~DGE~-~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r 145 (387)
.++.+++ -.+.-.+|+.+++.| +.+.+-+...|..++.. ...+..++.|++|+|+........ -+.-.+++++
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~----Tl~~a~~~l~ 226 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAG----TITKGAALLH 226 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchH----HHHHHHHHHH
Confidence 3455555 445678999999999 78888777776554432 335667899999999977654332 2566778999
Q ss_pred hcCCCeEEEEe--ecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHH
Q 016576 146 RASAKNITAVI--PYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLA 223 (387)
Q Consensus 146 ~~~a~~it~vi--PY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~ 223 (387)
+.||++|.++. |.|+- .-.+.|...+++.|++.|-+.......|+ ....++..+++++.|.
T Consensus 227 ~~Ga~~v~~~~tH~v~~~----------------~a~~~l~~~~~~~iv~t~ti~~~~~~~~~-~~~~~~v~~~la~~i~ 289 (302)
T PLN02369 227 QEGAREVYACATHAVFSP----------------PAIERLSSGLFQEVIVTNTIPVSEKNYFP-QLTVLSVANLLGETIW 289 (302)
T ss_pred hCCCCEEEEEEEeeeeCH----------------HHHHHHHhCCCCEEEEeCCCCChhhcccC-CceEEEHHHHHHHHHH
Confidence 99999999988 54431 12234556789999998876422111232 3556777888988886
Q ss_pred hh
Q 016576 224 SK 225 (387)
Q Consensus 224 ~~ 225 (387)
+.
T Consensus 290 ~~ 291 (302)
T PLN02369 290 RV 291 (302)
T ss_pred HH
Confidence 54
No 96
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=96.19 E-value=0.26 Score=49.43 Aligned_cols=139 Identities=15% Similarity=0.113 Sum_probs=90.6
Q ss_pred CCeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEE-eeecCCCCCEEEEEecccCchHHH---HHHHHHHH
Q 016576 230 DDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVM-NLIGDVKGKVAVMVDDMIDTAGTI---SKGAALLH 305 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~-~l~gdV~Gk~VIIVDDIIdTG~Tl---~~aa~~Lk 305 (387)
++..+++ -.+....|+.+|+.+.+.++.-+..+|-..++.++. .+.+++.|++|+||=.+... .-+ .-.++.|+
T Consensus 15 ~~~~i~~-g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dAlr 92 (326)
T PLN02297 15 KQVHLFY-CEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYALP 92 (326)
T ss_pred CCeEEEE-CCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHHHH
Confidence 3444444 456688999999986238888888777666643332 34578999999999776544 333 34678999
Q ss_pred HcCCcEEEEEEEcc-------cCCh------hHH-HHHhc-----CCCCEEEEeCCCCCcccCCCC-Cce--EEehHHHH
Q 016576 306 QEGAREVYACSTHA-------VFSP------PAI-ERLSS-----GLFQEVIITNTIPVSERNYFP-QLT--ILSVANLL 363 (387)
Q Consensus 306 ~~GA~~V~v~~tHg-------vfs~------~A~-e~L~~-----s~i~~IvvTnTi~~~~~~~~~-kl~--vlsva~ll 363 (387)
++||++|.++.-+- .|.+ ... +.|+. .++++|++-|-....-+..++ .+. .++..++|
T Consensus 93 ~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l~a~~~l 172 (326)
T PLN02297 93 KLFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFESGIPLL 172 (326)
T ss_pred HcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCCccCCcccchhhccHHHH
Confidence 99999999988322 1221 123 23344 479999999887432222232 222 23778999
Q ss_pred HHHHHHH
Q 016576 364 GETIWRV 370 (387)
Q Consensus 364 a~~I~~~ 370 (387)
++.|+..
T Consensus 173 ~~~i~~~ 179 (326)
T PLN02297 173 KKRLQQL 179 (326)
T ss_pred HHHHHhc
Confidence 9999754
No 97
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=96.03 E-value=0.27 Score=50.31 Aligned_cols=136 Identities=13% Similarity=0.094 Sum_probs=86.8
Q ss_pred CCeEEEecCCCchHHHHHHHHHc---------------C----CCC--EEEEEEeecCCCeeEEEeeecCCCCCEEEEEe
Q 016576 230 DDLVVVSPDVGGVARARAFAKKL---------------S----DAP--LAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVD 288 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~~L---------------~----~~~--~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVD 288 (387)
.+..+++ -.++...|+.+|+.| + +++ +.-+..+|-..++.. ..+..+|.|++|+||-
T Consensus 7 ~~~~i~~-~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~-vri~~~Vrg~dV~ivq 84 (382)
T PRK06827 7 GSLGIIA-LPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAK-GEILESVRGKDIYILQ 84 (382)
T ss_pred CceEEEE-CCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEE-EEECCCCCCCeEEEEe
Confidence 3444554 455677888888888 2 233 555555554444432 3566789999999999
Q ss_pred cccC---------------chHHHHH---HHHHHHHcCCcEEEEEEEcccCCh--------------hHHH-HHhcCCCC
Q 016576 289 DMID---------------TAGTISK---GAALLHQEGAREVYACSTHAVFSP--------------PAIE-RLSSGLFQ 335 (387)
Q Consensus 289 DIId---------------TG~Tl~~---aa~~Lk~~GA~~V~v~~tHgvfs~--------------~A~e-~L~~s~i~ 335 (387)
++.. .-..+.+ .+++|+ +||++|.++. |-|.. ...- .|+..+++
T Consensus 85 s~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~Vi--PY~~YaRQDr~~~~e~itak~vA~lL~~~G~d 161 (382)
T PRK06827 85 DVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIM--PFLYESRQHKRKGRESLDCALALQELEELGVD 161 (382)
T ss_pred cCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEe--ecccccccccccCCCCccHHHHHHHHHHcCCC
Confidence 9752 2333444 889999 9999999887 33322 1222 23445799
Q ss_pred EEEEeCCCCCcccCCCC--CceEEehHHHHHHHHHHH
Q 016576 336 EVIITNTIPVSERNYFP--QLTILSVANLLGETIWRV 370 (387)
Q Consensus 336 ~IvvTnTi~~~~~~~~~--kl~vlsva~lla~~I~~~ 370 (387)
+|++-|-.-..-+..++ .+.-++-++.+++.++..
T Consensus 162 ~vitvDlHs~~i~~~F~~~pvdnl~a~~~l~~~i~~~ 198 (382)
T PRK06827 162 NIITFDAHDPRIENAIPLMGFENLYPSYQIIKALLKN 198 (382)
T ss_pred eEEEecCChHHhcccCCCCCcCCcCchHHHHHHHHHh
Confidence 99999876432222332 466677788888888643
No 98
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=92.91 E-value=0.37 Score=44.92 Aligned_cols=69 Identities=16% Similarity=0.358 Sum_probs=48.2
Q ss_pred eeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcE--EEEEEEcccCCh-hHHHHHhcCCCC-EEEEeCCCCC
Q 016576 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGARE--VYACSTHAVFSP-PAIERLSSGLFQ-EVIITNTIPV 345 (387)
Q Consensus 274 ~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~--V~v~~tHgvfs~-~A~e~L~~s~i~-~IvvTnTi~~ 345 (387)
....|+.-|+|++.=.+++||.|+++|++.|+++|... |+... +|.. -+.+.+.....+ .|++++-.|.
T Consensus 182 rfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~s---LF~tP~gak~i~~~fP~itiltseihpv 254 (267)
T KOG1017|consen 182 RFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVS---LFITPTGAKNITRKFPYITILTSEIHPV 254 (267)
T ss_pred ecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEE---eeecchhhHHHHHhCCeEEEEeecceec
Confidence 55678999999999999999999999999999999863 44433 4443 344444433333 4445554444
No 99
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=92.88 E-value=1.1 Score=41.03 Aligned_cols=85 Identities=14% Similarity=0.231 Sum_probs=58.6
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCce--eceEEeecCCCc----EEEE--eCCCcCCceEEEEecCCCCChhhHHHHHHHH
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDL--GKIKIKRFADGE----IYVQ--LQESVRGCHVFLVQPSCPPANENIMELLVMI 141 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l--~~~~~~~F~DGE----~~v~--i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i 141 (387)
.+.|=-.+....+|..+|+.||+++ .-+...++.+++ +... ...+++|++|+||....... . -|.-.+
T Consensus 42 ~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG-~---Tl~~~~ 117 (181)
T PRK09162 42 PLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEG-H---TLAAIR 117 (181)
T ss_pred eEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEEccccCcH-H---HHHHHH
Confidence 3444446778899999999999874 456666776643 2222 23578999999997654332 1 244567
Q ss_pred HHHHhcCCCeEEEEeec
Q 016576 142 DACRRASAKNITAVIPY 158 (387)
Q Consensus 142 ~a~r~~~a~~it~viPY 158 (387)
+.|++.||++|.+..-+
T Consensus 118 ~~Lk~~Ga~~V~~avL~ 134 (181)
T PRK09162 118 DRCLEMGAAEVYSAVLV 134 (181)
T ss_pred HHHHhCCCCEEEEEEEE
Confidence 77899999999887654
No 100
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=91.73 E-value=2.3 Score=38.36 Aligned_cols=84 Identities=13% Similarity=0.289 Sum_probs=57.5
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCc--eeceEEeecCCC-----cEEE--EeCCCcCCceEEEEecCCCCChhhHHHHHHHH
Q 016576 71 LRIFSGTANPALSQEISCYMGLD--LGKIKIKRFADG-----EIYV--QLQESVRGCHVFLVQPSCPPANENIMELLVMI 141 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~--l~~~~~~~F~DG-----E~~v--~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i 141 (387)
+.+=-..+.-.+|+.+++.|+.+ ++.+.+..|-|+ +..+ .+..++.|++|+||........ . +.-.+
T Consensus 29 vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~TG~-T---l~~~~ 104 (166)
T TIGR01203 29 VLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDTGL-T---LQYLL 104 (166)
T ss_pred EEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeCcHH-H---HHHHH
Confidence 33334667889999999999965 556777767544 2332 2456789999999976644322 2 45566
Q ss_pred HHHHhcCCCeEEEEeec
Q 016576 142 DACRRASAKNITAVIPY 158 (387)
Q Consensus 142 ~a~r~~~a~~it~viPY 158 (387)
++|+..++++|.++.-+
T Consensus 105 ~~l~~~g~~~i~~~~l~ 121 (166)
T TIGR01203 105 DLLKARKPKSLKIVTLL 121 (166)
T ss_pred HHHHHCCCCEEEEEEEE
Confidence 77888899998876644
No 101
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=91.28 E-value=3.9 Score=37.43 Aligned_cols=83 Identities=8% Similarity=0.115 Sum_probs=58.3
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCc--eeceEEeecC-----CCcEEEEe--CCCcCCceEEEEecCCCCChhhHHHHHHHH
Q 016576 71 LRIFSGTANPALSQEISCYMGLD--LGKIKIKRFA-----DGEIYVQL--QESVRGCHVFLVQPSCPPANENIMELLVMI 141 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~--l~~~~~~~F~-----DGE~~v~i--~~~vrg~dV~iiqs~~~~~nd~lmeLll~i 141 (387)
+.+=-.+.+-.+|..+++.|+.+ +.-+...+|- +|++.+.. ..+++|++|+||....... . - |..+.
T Consensus 37 vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG-~-T--L~~l~ 112 (178)
T PRK15423 37 VLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSG-N-T--LSKVR 112 (178)
T ss_pred EEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEEEeeecCch-H-H--HHHHH
Confidence 33333667889999999999986 5578888996 35555553 3579999999997764432 2 2 22566
Q ss_pred HHHHhcCCCeEEEEee
Q 016576 142 DACRRASAKNITAVIP 157 (387)
Q Consensus 142 ~a~r~~~a~~it~viP 157 (387)
+.++..+++++..+.-
T Consensus 113 ~~l~~~~~~~v~~avL 128 (178)
T PRK15423 113 EILSLREPKSLAICTL 128 (178)
T ss_pred HHHHhCCCCEEEEEEE
Confidence 6778888998854443
No 102
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=90.10 E-value=3.8 Score=38.24 Aligned_cols=85 Identities=24% Similarity=0.324 Sum_probs=62.7
Q ss_pred cEEEEe-CCCCHHHHHHHHHHhC-CceeceEEeecCCC-c---EEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHH
Q 016576 70 RLRIFS-GTANPALSQEISCYMG-LDLGKIKIKRFADG-E---IYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDA 143 (387)
Q Consensus 70 ~~~ifs-g~~~~~La~~ia~~lg-~~l~~~~~~~F~DG-E---~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a 143 (387)
++.+++ ..+...+++.+++.|+ .+.+.+...+.... + .+.+++.++.|++|+|+..+....+. +...++.
T Consensus 71 ~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~T----l~~ai~~ 146 (209)
T PRK00129 71 KLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGS----AIAAIDL 146 (209)
T ss_pred eEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHH----HHHHHHH
Confidence 355554 6778899999999998 57888777664321 2 36678889999999999876544332 5566788
Q ss_pred HHhcCCCeEEEEeec
Q 016576 144 CRRASAKNITAVIPY 158 (387)
Q Consensus 144 ~r~~~a~~it~viPY 158 (387)
+++.|+++|.++.-+
T Consensus 147 L~~~G~~~I~~~~ll 161 (209)
T PRK00129 147 LKKRGAKNIKVLCLV 161 (209)
T ss_pred HHHcCCCEEEEEEEe
Confidence 888899999877753
No 103
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=88.90 E-value=4.8 Score=37.55 Aligned_cols=85 Identities=14% Similarity=0.254 Sum_probs=63.2
Q ss_pred cEEEEe-CCCCHHHHHHHHHHhC-CceeceEEeecCC-Cc---EEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHH
Q 016576 70 RLRIFS-GTANPALSQEISCYMG-LDLGKIKIKRFAD-GE---IYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDA 143 (387)
Q Consensus 70 ~~~ifs-g~~~~~La~~ia~~lg-~~l~~~~~~~F~D-GE---~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a 143 (387)
++.+++ ..+...+++.+.+.|. .+.+.+...+... ++ .+.++++++.|++|+|+.++-...+. +...++.
T Consensus 69 ~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~T----l~~ai~~ 144 (207)
T TIGR01091 69 KIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGT----MIAALDL 144 (207)
T ss_pred cEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHH----HHHHHHH
Confidence 355554 6778899999999998 5777766655422 22 46778889999999999876554332 6677888
Q ss_pred HHhcCCCeEEEEeec
Q 016576 144 CRRASAKNITAVIPY 158 (387)
Q Consensus 144 ~r~~~a~~it~viPY 158 (387)
+++.|+++|.++...
T Consensus 145 L~~~G~~~I~v~~ll 159 (207)
T TIGR01091 145 LKKRGAKKIKVLSIV 159 (207)
T ss_pred HHHcCCCEEEEEEEe
Confidence 899999999888773
No 104
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=87.24 E-value=2.3 Score=39.33 Aligned_cols=99 Identities=10% Similarity=0.100 Sum_probs=61.3
Q ss_pred EEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCC
Q 016576 109 VQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGA 188 (387)
Q Consensus 109 v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~ 188 (387)
+.+-.+|.|++++||..+..... -+.-.++.||+.||++|.++.-+-=++- ...+.|+...+
T Consensus 75 ~~vVGDV~gk~~IIvDDiIdtg~----Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~--------------~A~~~l~~s~I 136 (184)
T PF14572_consen 75 MNVVGDVKGKICIIVDDIIDTGG----TLIKAAELLKERGAKKVYACATHGVFSG--------------DAPERLEESPI 136 (184)
T ss_dssp EEEES--TTSEEEEEEEEESSTH----HHHHHHHHHHHTTESEEEEEEEEE---T--------------THHHHHHHSSE
T ss_pred eEEEEEccCCeEeeecccccchH----HHHHHHHHHHHcCCCEEEEEEeCcccCc--------------hHHHHHhhcCC
Confidence 44567899999999987654432 3667788999999999999887633321 12355677889
Q ss_pred CEEEEecCCchhcccccCcccccccchHHHHHHHHhh
Q 016576 189 NRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASK 225 (387)
Q Consensus 189 d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~ 225 (387)
++|++-|-.-...+..-.-....++-.++|++.|.+.
T Consensus 137 d~vvvTnTIp~~~~~~~~~Ki~vldis~llaeaI~ri 173 (184)
T PF14572_consen 137 DEVVVTNTIPQEEQKLQCPKIKVLDISPLLAEAIRRI 173 (184)
T ss_dssp SEEEEETTS--HHHHHH-TTEEEE--HHHHHHHHHHH
T ss_pred eEEEEeccccCchhhhcCCCEeEeehHHHHHHHHHHH
Confidence 9999888533211111011345566778888888754
No 105
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=86.30 E-value=11 Score=34.79 Aligned_cols=85 Identities=15% Similarity=0.143 Sum_probs=58.5
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCC---ce--eceEEeecCC-----CcEEEEe---CCCcCCceEEEEecCCCCChhhHHH
Q 016576 70 RLRIFSGTANPALSQEISCYMGL---DL--GKIKIKRFAD-----GEIYVQL---QESVRGCHVFLVQPSCPPANENIME 136 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~---~l--~~~~~~~F~D-----GE~~v~i---~~~vrg~dV~iiqs~~~~~nd~lme 136 (387)
.+.+=-....-.+|..++++|+. ++ .-+...+|.+ |+..+.. ..+++|++|+||...... =--
T Consensus 37 ~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIidT----G~T 112 (189)
T PLN02238 37 PVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIVDT----GNT 112 (189)
T ss_pred cEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCEEEEEecccch----HHH
Confidence 33333355677899999999997 33 3566677755 4555554 357999999999765332 223
Q ss_pred HHHHHHHHHhcCCCeEEEEeec
Q 016576 137 LLVMIDACRRASAKNITAVIPY 158 (387)
Q Consensus 137 Lll~i~a~r~~~a~~it~viPY 158 (387)
|..+++++++.|++++.++.-+
T Consensus 113 l~~~~~~l~~~g~~~v~~avL~ 134 (189)
T PLN02238 113 LSALVAHLEAKGAASVSVCALL 134 (189)
T ss_pred HHHHHHHHHhCCCCEEEEEEEE
Confidence 5566788999999999877543
No 106
>PLN02440 amidophosphoribosyltransferase
Probab=85.20 E-value=10 Score=40.12 Aligned_cols=120 Identities=14% Similarity=0.188 Sum_probs=70.4
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCceece-EEeecC------------CCcEEEEeC---CCcCCceEEEEecCCCCChh
Q 016576 69 TRLRIFSGTANPALSQEISCYMGLDLGKI-KIKRFA------------DGEIYVQLQ---ESVRGCHVFLVQPSCPPANE 132 (387)
Q Consensus 69 ~~~~ifsg~~~~~La~~ia~~lg~~l~~~-~~~~F~------------DGE~~v~i~---~~vrg~dV~iiqs~~~~~nd 132 (387)
-.+.+---.+...+|..+|+.+|+++... .-.+|. ++....++. ..++|++|+||...-..-.
T Consensus 276 ~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~gk~VlLVDDiittGt- 354 (479)
T PLN02440 276 CDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVRGT- 354 (479)
T ss_pred CCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEeeccccccCcchhhhhhhheeeeecccccccCceEEEEeceeCcHH-
Confidence 34555555666789999999999987632 113332 233344432 4589999999965322211
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEee--------cCccccchhhccCCccchHHHHHHHHHHhCCCEEEEec
Q 016576 133 NIMELLVMIDACRRASAKNITAVIP--------YFGYARADRKTQGRESIAAKLVANLITEAGANRVLACD 195 (387)
Q Consensus 133 ~lmeLll~i~a~r~~~a~~it~viP--------Y~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvD 195 (387)
-|--+++.||++||++|.+.+- |++..=.||++.=+.-.+...+++ ..|+|.+.-+.
T Consensus 355 ---Tl~~i~~~L~~aGa~~V~v~v~~p~~~~p~~~G~d~p~~~~li~~~~~~~ei~~---~~~~dsl~~l~ 419 (479)
T PLN02440 355 ---TSSKIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIRK---FIGCDSLAFLP 419 (479)
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEECCcccccceeeccCCCHHHHhhcCCCHHHHHH---HhCCCEEEEec
Confidence 2445678899999999987764 333333334332122233334444 45778776543
No 107
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=83.72 E-value=11 Score=31.19 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEeec------------CCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHH
Q 016576 76 GTANPALSQEISCYMGLDLGKIKIKRF------------ADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDA 143 (387)
Q Consensus 76 g~~~~~La~~ia~~lg~~l~~~~~~~F------------~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a 143 (387)
..+.-.+|..+|..|+.++.-...... .+........+.++|++|+||.......+. +.-+++.
T Consensus 35 ~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~vliVDDvi~tG~T----l~~~~~~ 110 (125)
T PF00156_consen 35 PRGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRVLIVDDVIDTGGT----LKEAIEL 110 (125)
T ss_dssp TTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEEEEEEEEESSSHH----HHHHHHH
T ss_pred hhccHHHHHHHHHHhCCCccceeeeecccccchhhhhccCceEEeecccccccceeEEEEeeeEcccHH----HHHHHHH
Confidence 456779999999999988765543221 111233344678899999999765443332 5566788
Q ss_pred HHhcCCCeEEEEee
Q 016576 144 CRRASAKNITAVIP 157 (387)
Q Consensus 144 ~r~~~a~~it~viP 157 (387)
++++|++.+.++..
T Consensus 111 L~~~g~~~v~~~vl 124 (125)
T PF00156_consen 111 LKEAGAKVVGVAVL 124 (125)
T ss_dssp HHHTTBSEEEEEEE
T ss_pred HHhCCCcEEEEEEE
Confidence 89999998887654
No 108
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=83.12 E-value=7.3 Score=40.77 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=53.1
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEE-eecC-------C-------CcEEEEe-CCCcCCceEEEEecCCCCChhh
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKI-KRFA-------D-------GEIYVQL-QESVRGCHVFLVQPSCPPANEN 133 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~-~~F~-------D-------GE~~v~i-~~~vrg~dV~iiqs~~~~~nd~ 133 (387)
.+.+-.-.+...+|..+|+.||+++...-+ +++. + +...+.. .+.++||+|+||...-... ..
T Consensus 277 d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvitTG-~T 355 (445)
T PRK08525 277 DFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVRG-TT 355 (445)
T ss_pred CeEEECCchHHHHHHHHHHHhCCCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEecccCcH-HH
Confidence 344444445568999999999998742112 2221 1 1122222 3458999999996543221 12
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeec
Q 016576 134 IMELLVMIDACRRASAKNITAVIPY 158 (387)
Q Consensus 134 lmeLll~i~a~r~~~a~~it~viPY 158 (387)
|.-++++||++||++|.+.+-.
T Consensus 356 ---l~~a~~~Lr~aGA~~V~v~~~h 377 (445)
T PRK08525 356 ---SKKIVSLLRAAGAKEIHLRIAC 377 (445)
T ss_pred ---HHHHHHHHHhcCCCEEEEEEEC
Confidence 3457789999999999988744
No 109
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=83.05 E-value=15 Score=38.81 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=54.6
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEE-eecC------------CCcEEEEe---CCCcCCceEEEEecCCCCChhh
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKI-KRFA------------DGEIYVQL---QESVRGCHVFLVQPSCPPANEN 133 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~-~~F~------------DGE~~v~i---~~~vrg~dV~iiqs~~~~~nd~ 133 (387)
.+.+---.+...+|..+|+.+|++....-+ .+|- +..+.++. .+.++|++|++|........
T Consensus 297 D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~gk~vvlvDD~i~tG~-- 374 (479)
T PRK09123 297 DVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVRGT-- 374 (479)
T ss_pred eEEEEcCccHHHHHHHHHHhcCCCeeheEEEEeecCccccccccccccccEEEEecccccccCCCEEEEEeceeCchH--
Confidence 455544556678999999999999864222 2342 12233332 23478999999865432221
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEe
Q 016576 134 IMELLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 134 lmeLll~i~a~r~~~a~~it~vi 156 (387)
-|.-+++.||++||++|.+.+
T Consensus 375 --Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 375 --TSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred --HHHHHHHHHHHcCCCEEEEEE
Confidence 245688899999999999988
No 110
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=82.80 E-value=6.9 Score=41.43 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=70.5
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEE------eec--CCC---cEEEE-----eCCCcCCceEEEEecCCCCChhh
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKI------KRF--ADG---EIYVQ-----LQESVRGCHVFLVQPSCPPANEN 133 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~------~~F--~DG---E~~v~-----i~~~vrg~dV~iiqs~~~~~nd~ 133 (387)
.+.+---++...+|..+|+.+|+++..--+ ..| |.. +..++ +...++|++|+||...-... ..
T Consensus 287 D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~gk~vllVDDvittG-~T 365 (484)
T PRK07272 287 DIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRG-TT 365 (484)
T ss_pred CEEEEecHHHHHHHHHHHHHHCCCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccCCCEEEEEccccCch-HH
Confidence 455544566778999999999998743222 233 221 11111 24568899999986532211 11
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEee--------cCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecC
Q 016576 134 IMELLVMIDACRRASAKNITAVIP--------YFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDL 196 (387)
Q Consensus 134 lmeLll~i~a~r~~~a~~it~viP--------Y~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDl 196 (387)
+--.+.++|++||+.|.+.+- ||+..++.|..--..-.+.+.++ +..|+|.+.-+.+
T Consensus 366 ---~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~---~~~~~dsl~~~~~ 430 (484)
T PRK07272 366 ---SRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEIC---DIIGADSLTYLSV 430 (484)
T ss_pred ---HHHHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHH---HHhCCCEEEEecH
Confidence 335678899999999998886 67777766542101112223333 3456776655443
No 111
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=82.76 E-value=7.9 Score=35.00 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEE
Q 016576 76 GTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAV 155 (387)
Q Consensus 76 g~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~v 155 (387)
....-.+|..+|..||++..-+.-.+...|+..... ..++|++|+||......- . -+.-.++++|++|| +++.+
T Consensus 64 ~~gGi~~A~~~a~~l~~p~~~~rK~~k~~g~~~~~~-g~~~g~~VlIVDDvi~TG-~---T~~~~~~~l~~~Ga-~v~~~ 137 (170)
T PRK13811 64 AVGGVPLAVAVSLAAGKPYAIIRKEAKDHGKAGLII-GDVKGKRVLLVEDVTTSG-G---SALYGIEQLRAAGA-VVDDV 137 (170)
T ss_pred CcCcHHHHHHHHHHHCCCEEEEecCCCCCCCcceEE-cccCCCEEEEEEeccccc-H---HHHHHHHHHHHCCC-eEEEE
Confidence 334679999999999999876665555667655444 458999999997653322 1 25667788899997 44444
Q ss_pred eecCc
Q 016576 156 IPYFG 160 (387)
Q Consensus 156 iPY~~ 160 (387)
+-.+-
T Consensus 138 ~~~vd 142 (170)
T PRK13811 138 VTVVD 142 (170)
T ss_pred EEEEE
Confidence 44443
No 112
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=82.62 E-value=16 Score=32.87 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEee-cC-----------CCcEEEEeC--CCcCCceEEEEecCCCCChhhHHHHHHHH
Q 016576 76 GTANPALSQEISCYMGLDLGKIKIKR-FA-----------DGEIYVQLQ--ESVRGCHVFLVQPSCPPANENIMELLVMI 141 (387)
Q Consensus 76 g~~~~~La~~ia~~lg~~l~~~~~~~-F~-----------DGE~~v~i~--~~vrg~dV~iiqs~~~~~nd~lmeLll~i 141 (387)
..+.-.+|..+|..||+++.-+.-.+ ++ .|+-.+.+. ..++|++|+||........ -+.-++
T Consensus 59 ~~~Gi~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~----Tl~~~~ 134 (175)
T PRK02304 59 EARGFIFGAALAYKLGIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGG----TLEAAI 134 (175)
T ss_pred ccchHHHHHHHHHHhCCCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccH----HHHHHH
Confidence 45566999999999999976432211 11 133344443 3478999999977654332 256677
Q ss_pred HHHHhcCCCeE
Q 016576 142 DACRRASAKNI 152 (387)
Q Consensus 142 ~a~r~~~a~~i 152 (387)
+.++++||+.+
T Consensus 135 ~~l~~~Ga~~v 145 (175)
T PRK02304 135 KLLERLGAEVV 145 (175)
T ss_pred HHHHHcCCEEE
Confidence 88889999755
No 113
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=82.27 E-value=8.5 Score=34.53 Aligned_cols=76 Identities=9% Similarity=0.128 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeec------------CCCcEEEEe--CCCcCCceEEEEecCCCCChhhHHHHHHHHH
Q 016576 77 TANPALSQEISCYMGLDLGKIKIKRF------------ADGEIYVQL--QESVRGCHVFLVQPSCPPANENIMELLVMID 142 (387)
Q Consensus 77 ~~~~~La~~ia~~lg~~l~~~~~~~F------------~DGE~~v~i--~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~ 142 (387)
...-.+|..+|+.||++...+.-... .+|+-.+.+ ....+|++|+||........ -+.-+++
T Consensus 55 ~~G~~~A~~la~~L~~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~----Tl~~a~~ 130 (169)
T TIGR01090 55 ARGFIFGAALAYKLGVGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGG----TAEATDE 130 (169)
T ss_pred hccHHHHHHHHHHHCCCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchH----HHHHHHH
Confidence 44559999999999998764432222 123222333 33458999999976543322 2556778
Q ss_pred HHHhcCCCeEEEEe
Q 016576 143 ACRRASAKNITAVI 156 (387)
Q Consensus 143 a~r~~~a~~it~vi 156 (387)
.++++||+.+.++.
T Consensus 131 ~L~~~Ga~~v~~~~ 144 (169)
T TIGR01090 131 LIRKLGGEVVEAAF 144 (169)
T ss_pred HHHHcCCEEEEEEE
Confidence 88999998665443
No 114
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=81.87 E-value=21 Score=32.85 Aligned_cols=78 Identities=13% Similarity=0.062 Sum_probs=52.0
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCC-cCCceEEEEecCCCCChhhHHHHHHHHHHHHhcC
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQES-VRGCHVFLVQPSCPPANENIMELLVMIDACRRAS 148 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~-vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~ 148 (387)
.+.+=...+.-.+|..+|..||++..-. .+. .|+..+..... .+|++|+||...-... --+.-+++.++++|
T Consensus 60 d~Ivgi~~gGi~~A~~la~~L~~~~i~~--~k~-~~~~~~~~~~~l~~G~~VLIVDDIi~TG----~Tl~~a~~~l~~~G 132 (187)
T TIGR01367 60 DFIVGPAMGGVILGYEVARQLSVRSIFA--ERE-GGGMKLRRGFAVKPGEKFVAVEDVVTTG----GSLLEAIRAIEGQG 132 (187)
T ss_pred CEEEEEccCcHHHHHHHHHHhCCCeEEE--EEe-CCcEEEeecccCCCCCEEEEEEeeecch----HHHHHHHHHHHHcC
Confidence 3444345668899999999999886433 333 37766654433 5899999997653322 22555667789999
Q ss_pred CCeEEE
Q 016576 149 AKNITA 154 (387)
Q Consensus 149 a~~it~ 154 (387)
|+.+.+
T Consensus 133 a~vv~~ 138 (187)
T TIGR01367 133 GQVVGL 138 (187)
T ss_pred CeEEEE
Confidence 986643
No 115
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=81.48 E-value=17 Score=33.58 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=51.4
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcE-EEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcC
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEI-YVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRAS 148 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~-~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~ 148 (387)
++.+=.....-.+|..+|..||++..-..-.....|+. .+. ...++|++|+||...-.... -+.-+++.++++|
T Consensus 66 d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~~~~~~-~~~~~g~~VliVDDvi~tG~----Tl~~~~~~l~~~G 140 (202)
T PRK00455 66 DVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGEGGQIE-GRRLFGKRVLVVEDVITTGG----SVLEAVEAIRAAG 140 (202)
T ss_pred CEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCCCceEE-ccCCCCCEEEEEecccCCcH----HHHHHHHHHHHcC
Confidence 34333345678999999999998876554333333332 222 33568999999976543322 2555678888999
Q ss_pred CCeEEEE
Q 016576 149 AKNITAV 155 (387)
Q Consensus 149 a~~it~v 155 (387)
++.+.++
T Consensus 141 a~~v~~~ 147 (202)
T PRK00455 141 AEVVGVA 147 (202)
T ss_pred CEEEEEE
Confidence 8765533
No 116
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=81.29 E-value=17 Score=32.88 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=54.5
Q ss_pred EEEEeCCCCHHHHHHHHHHh----C--CceeceEEeecCCCc-----E-E---EEeCCCcCCceEEEEecCCCCChhhHH
Q 016576 71 LRIFSGTANPALSQEISCYM----G--LDLGKIKIKRFADGE-----I-Y---VQLQESVRGCHVFLVQPSCPPANENIM 135 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~l----g--~~l~~~~~~~F~DGE-----~-~---v~i~~~vrg~dV~iiqs~~~~~nd~lm 135 (387)
+.+--....-.+|..+++.| | ++++.+....|-|+. . . ..+..++.|++|+||........
T Consensus 34 viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~---- 109 (176)
T PRK05205 34 VLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGR---- 109 (176)
T ss_pred EEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcHH----
Confidence 33334566788999999999 4 345666666676542 1 1 22345799999999976644322
Q ss_pred HHHHHHHHHHhcC-CCeEEEEeec
Q 016576 136 ELLVMIDACRRAS-AKNITAVIPY 158 (387)
Q Consensus 136 eLll~i~a~r~~~-a~~it~viPY 158 (387)
-|...++.+++.| ++++.++.-+
T Consensus 110 Tl~~~~~~L~~~G~~~~v~~avL~ 133 (176)
T PRK05205 110 TIRAALDALFDYGRPARVQLAVLV 133 (176)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEEE
Confidence 2556678888888 6777655543
No 117
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=80.42 E-value=21 Score=32.64 Aligned_cols=111 Identities=25% Similarity=0.374 Sum_probs=70.6
Q ss_pred HHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEEE
Q 016576 180 ANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLAI 259 (387)
Q Consensus 180 A~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~~ 259 (387)
.+.|...|+.-|++ |+-+. . +|.++-++.|.+-+|+.+.....-..+|| .++.-.|+..+++.|+ +++.+
T Consensus 20 ~~~L~~~Gikgvi~-DlDNT-----L-v~wd~~~~tpe~~~W~~e~k~~gi~v~vv--SNn~e~RV~~~~~~l~-v~fi~ 89 (175)
T COG2179 20 PDILKAHGIKGVIL-DLDNT-----L-VPWDNPDATPELRAWLAELKEAGIKVVVV--SNNKESRVARAAEKLG-VPFIY 89 (175)
T ss_pred HHHHHHcCCcEEEE-eccCc-----e-ecccCCCCCHHHHHHHHHHHhcCCEEEEE--eCCCHHHHHhhhhhcC-Cceee
Confidence 46677888877764 55221 0 67888889999999998742122234555 4477889999999996 88765
Q ss_pred EEEeecC--------------CCeeEE----E--eeecCCCCCEEEEEecccCchHHHHHH
Q 016576 260 VDKRRQG--------------HNVAEV----M--NLIGDVKGKVAVMVDDMIDTAGTISKG 300 (387)
Q Consensus 260 v~K~R~~--------------~~~~e~----~--~l~gdV~Gk~VIIVDDIIdTG~Tl~~a 300 (387)
-.++-.+ .+..-+ + -+-|+..|-++|+|.-++.+.+-....
T Consensus 90 ~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d~~~t~~ 150 (175)
T COG2179 90 RAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAPDGWITKI 150 (175)
T ss_pred cccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEeccccchhhhh
Confidence 4332210 011101 1 123466788999999999999844433
No 118
>PF15610 PRTase_3: PRTase ComF-like
Probab=79.94 E-value=2 Score=41.94 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=34.5
Q ss_pred CCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE
Q 016576 278 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 278 dV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
-++||.||.+|||--||++=....+.+++.|++....+.
T Consensus 135 ~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~yl 173 (274)
T PF15610_consen 135 FLSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFIYL 173 (274)
T ss_pred HhCCcEEEEeccEEecCcHHHHHHHHHHHcCccccEEEE
Confidence 369999999999999999999999999999999755444
No 119
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=79.91 E-value=13 Score=34.48 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=54.0
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEE-----EEe-CCCcCCceEEEEecCCCCChhhHHHHHHHHHH
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIY-----VQL-QESVRGCHVFLVQPSCPPANENIMELLVMIDA 143 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~-----v~i-~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a 143 (387)
.+.+=...+.-.+|..+|..||.++....-.++..|+.. +.. ...++|++|+||....... .. +.-.+++
T Consensus 87 D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG-~T---l~~ai~~ 162 (200)
T PRK02277 87 DVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSG-TT---MKETIEY 162 (200)
T ss_pred CEEEeeccCCHHHHHHHHHHhCCCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCch-HH---HHHHHHH
Confidence 444444456779999999999999876655555333211 111 1357999999997653322 22 4556678
Q ss_pred HHhcCCCeEEEEe
Q 016576 144 CRRASAKNITAVI 156 (387)
Q Consensus 144 ~r~~~a~~it~vi 156 (387)
++++|++.+.++.
T Consensus 163 l~~~Ga~~v~v~v 175 (200)
T PRK02277 163 LKEHGGKPVAVVV 175 (200)
T ss_pred HHHcCCEEEEEEE
Confidence 8899998776544
No 120
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=79.62 E-value=23 Score=33.41 Aligned_cols=83 Identities=11% Similarity=0.279 Sum_probs=57.5
Q ss_pred cEEEEe-CCCCHHHHHHHHHHhC---C--ceeceEEeecCCC-----cEEEE--eCCCcCCceEEEEecCCCCChhhHHH
Q 016576 70 RLRIFS-GTANPALSQEISCYMG---L--DLGKIKIKRFADG-----EIYVQ--LQESVRGCHVFLVQPSCPPANENIME 136 (387)
Q Consensus 70 ~~~ifs-g~~~~~La~~ia~~lg---~--~l~~~~~~~F~DG-----E~~v~--i~~~vrg~dV~iiqs~~~~~nd~lme 136 (387)
.+.+++ .+..-.+|..++++|+ + ++..+.+..|-|| ++.+. +..+++|++|+||...-.. =.-
T Consensus 58 ~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDT----G~T 133 (211)
T PTZ00271 58 PLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDS----AIT 133 (211)
T ss_pred CeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCC----HHH
Confidence 444443 6778899999999996 3 4677888888654 34443 3468999999999765332 223
Q ss_pred HHHHHHHHHhcCCCeEEEEe
Q 016576 137 LLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 137 Lll~i~a~r~~~a~~it~vi 156 (387)
|..+++.|+..++++|....
T Consensus 134 L~~v~~~l~~~~p~svk~av 153 (211)
T PTZ00271 134 LQYLMRFMLAKKPASLKTVV 153 (211)
T ss_pred HHHHHHHHHhcCCCEEEEEE
Confidence 56667778878898885444
No 121
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=78.46 E-value=15 Score=38.72 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=54.2
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceece-EEeec-------CCCc-----EEEEe---CCCcCCceEEEEecCCCCChhh
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKI-KIKRF-------ADGE-----IYVQL---QESVRGCHVFLVQPSCPPANEN 133 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~-~~~~F-------~DGE-----~~v~i---~~~vrg~dV~iiqs~~~~~nd~ 133 (387)
++.+-.-.+...+|..+|+.+|+++... ...++ |+.+ ..+++ ...++|++|++|...-... .
T Consensus 290 D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~ItTG--t 367 (469)
T PRK05793 290 DIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRG--T 367 (469)
T ss_pred CEEEEcCccHHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccccCch--H
Confidence 4444444556789999999999998642 12222 1211 12222 2567999999996542221 1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeec
Q 016576 134 IMELLVMIDACRRASAKNITAVIPY 158 (387)
Q Consensus 134 lmeLll~i~a~r~~~a~~it~viPY 158 (387)
- +.-++.+||++||++|.+.+-.
T Consensus 368 T--l~~~~~~Lr~aGAk~V~~~~~~ 390 (469)
T PRK05793 368 T--SKRLVELLRKAGAKEVHFRVSS 390 (469)
T ss_pred H--HHHHHHHHHHcCCCEEEEEEEC
Confidence 2 3347889999999999988744
No 122
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=77.55 E-value=15 Score=38.56 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=54.1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecC---------CCcEEEEe-----CCCcCCceEEEEecCCCCChhhH
Q 016576 69 TRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFA---------DGEIYVQL-----QESVRGCHVFLVQPSCPPANENI 134 (387)
Q Consensus 69 ~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~---------DGE~~v~i-----~~~vrg~dV~iiqs~~~~~nd~l 134 (387)
..+.+-.-.+...+|..+|+.+|++....-+++.. .-+..++. ...++|++|+||...-..- .
T Consensus 272 ~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~VlLVDD~IttG--t- 348 (442)
T PRK08341 272 GDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVVLVDDSIVRG--T- 348 (442)
T ss_pred CceEEEecCchHHHHHHHHHHhCCCchheEEEeccccccccCcCchhhhheeeecccccccCCCEEEEEeeeeccH--H-
Confidence 34555555555689999999999998753333222 12222222 3557899999986432211 1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEe
Q 016576 135 MELLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 135 meLll~i~a~r~~~a~~it~vi 156 (387)
-+--++++||++||++|.+.+
T Consensus 349 -Tl~~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 349 -TMKRIVKMLRDAGAREVHVRI 369 (442)
T ss_pred -HHHHHHHHHHhcCCcEEEEEE
Confidence 244577999999999999887
No 123
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=76.51 E-value=15 Score=33.52 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCc-CCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeE
Q 016576 76 GTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESV-RGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNI 152 (387)
Q Consensus 76 g~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~v-rg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i 152 (387)
..+.-.+|..+|.+||+++.-..-.+-..|+-... ...+ +|++|+||...-.... -+.-++++++++|++-+
T Consensus 66 ~~ggi~lA~~lA~~l~~p~~~~rk~~k~yg~~~~~-~g~~~~g~~VlIVDDvitTG~----Tl~~~~~~l~~~Ga~vv 138 (176)
T PRK13812 66 ALGAVPLVAVTSVETGVPYVIARKQAKEYGTGNRI-EGRLDEGEEVVVLEDIATTGQ----SAVDAVEALREAGATVN 138 (176)
T ss_pred ecchHHHHHHHHHHHCCCEEEEeccCCcCCCCCeE-EecCCCcCEEEEEEEeeCCCH----HHHHHHHHHHHCCCeEE
Confidence 44566899999999999887666555555654332 2344 8999999976533222 25667788889998644
No 124
>PLN02501 digalactosyldiacylglycerol synthase
Probab=76.15 E-value=34 Score=38.20 Aligned_cols=174 Identities=13% Similarity=0.166 Sum_probs=90.0
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCC--ChhhHHHHHHHHHHHHhc
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPP--ANENIMELLVMIDACRRA 147 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~--~nd~lmeLll~i~a~r~~ 147 (387)
...+-..+++.+|--+||.-+...-.+.+-+-..|...+ .+.+ .+++|.|+-+-+.| .-..+.-|+-.+.-++ .
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~r~~~ivTtAslPWmTGtavnpL~rAayLa~-~ 353 (794)
T PLN02501 278 SSLLESDNHNDELDLRIASVLQSTGHCYDGGFWTDSSKH-ELSD--GKRHVAIVTTASLPWMTGTAVNPLFRAAYLAK-S 353 (794)
T ss_pred ccccccccccccchhhhhhhhhccCccccCCcccCcccc-cccc--CCCeEEEEEcccCcccccccccHHHHHHHhcc-c
Confidence 444555677788999999887643322222222222211 2222 36899999876544 1122334555555455 3
Q ss_pred CCCeEEEEeecCccccchhhccCCccc-----hHHHHHHHH-HHhCCCEEEEecCCchhcccccCcccccccchHHHHHH
Q 016576 148 SAKNITAVIPYFGYARADRKTQGRESI-----AAKLVANLI-TEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDY 221 (387)
Q Consensus 148 ~a~~it~viPY~~YsRqDr~~~~~e~i-----sak~vA~lL-~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~ 221 (387)
|-.+||+|+|+++-+-|.........+ --.++-++| +.+|+..-..+... .|-|.....-+.+...+.+.
T Consensus 354 ~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~~~~~i~fY----pg~~~~~~~SI~p~gdI~~~ 429 (794)
T PLN02501 354 AKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFKADFKISFY----PGKFSKERRSIIPAGDTSQF 429 (794)
T ss_pred CCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCCCCceEEee----cchhccCCccccchHHHHHH
Confidence 568999999999976554433222222 234677888 56676532222111 12233223344555566666
Q ss_pred HHhhcCCCCCeEEEecCCCchH-HHHHHHHHcC
Q 016576 222 LASKAISSDDLVVVSPDVGGVA-RARAFAKKLS 253 (387)
Q Consensus 222 L~~~~~~~~~~vVVspd~Ggv~-rA~~lA~~L~ 253 (387)
|.+. +-+-+.+..|..=|.. -|...|++++
T Consensus 430 L~~f--~PDVVHLatP~~LGw~~~Glr~ArKl~ 460 (794)
T PLN02501 430 IPSK--DADIAILEEPEHLNWYHHGKRWTDKFN 460 (794)
T ss_pred hhcc--CCCEEEECCchhhccHHHHHHHHHHcC
Confidence 6542 1122233445443433 2555566663
No 125
>PLN02293 adenine phosphoribosyltransferase
Probab=75.57 E-value=43 Score=30.81 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEeecCCCcE------------EEEeC-CCc-CCceEEEEecCCCCChhhHHHHHHHH
Q 016576 76 GTANPALSQEISCYMGLDLGKIKIKRFADGEI------------YVQLQ-ESV-RGCHVFLVQPSCPPANENIMELLVMI 141 (387)
Q Consensus 76 g~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~------------~v~i~-~~v-rg~dV~iiqs~~~~~nd~lmeLll~i 141 (387)
....-.||..+|..||.++.-+.-.+..+|+. .+.+. ..+ +|+.|+||...-.... -+.-++
T Consensus 70 e~~Gi~lA~~lA~~Lg~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~----T~~~~~ 145 (187)
T PLN02293 70 EARGFIFGPPIALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGG----TLCAAI 145 (187)
T ss_pred CCCchHHHHHHHHHHCCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchH----HHHHHH
Confidence 34566899999999999876555444333332 22221 345 7999999976543221 255667
Q ss_pred HHHHhcCCCeEEEE
Q 016576 142 DACRRASAKNITAV 155 (387)
Q Consensus 142 ~a~r~~~a~~it~v 155 (387)
+.++++|++.+-++
T Consensus 146 ~~l~~~Ga~~v~~~ 159 (187)
T PLN02293 146 NLLERAGAEVVECA 159 (187)
T ss_pred HHHHHCCCEEEEEE
Confidence 88999999755433
No 126
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=75.00 E-value=31 Score=36.10 Aligned_cols=116 Identities=22% Similarity=0.302 Sum_probs=67.5
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCceeceEEee------c--CCCc-------EEEE-eCCCcCCceEEEEecCCCCChh
Q 016576 69 TRLRIFSGTANPALSQEISCYMGLDLGKIKIKR------F--ADGE-------IYVQ-LQESVRGCHVFLVQPSCPPANE 132 (387)
Q Consensus 69 ~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~------F--~DGE-------~~v~-i~~~vrg~dV~iiqs~~~~~nd 132 (387)
..+.+-.-.+....|..+|+.+|++....-+++ | |+.+ .+.. +...++|++|+||...-..- .
T Consensus 274 ~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~gk~v~lvDD~ittG-~ 352 (442)
T TIGR01134 274 ADVVIPVPDSGRSAALGFAQASGIPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVRG-T 352 (442)
T ss_pred CEEEEEccCCHHHHHHHHHHHhCCCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCCCCEEEEEecccccc-H
Confidence 344444445567899999999999886422222 2 2221 1111 12457899999986532221 1
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEee--------cCcc---ccchhhccCCccchHHHHHHHHHHhCCCEEEEe
Q 016576 133 NIMELLVMIDACRRASAKNITAVIP--------YFGY---ARADRKTQGRESIAAKLVANLITEAGANRVLAC 194 (387)
Q Consensus 133 ~lmeLll~i~a~r~~~a~~it~viP--------Y~~Y---sRqDr~~~~~e~isak~vA~lL~~~G~d~Vitv 194 (387)
-+--++.+||++||+.|.+.+- ||+- .|++.-... .+ +-++-+..|+|.+.-+
T Consensus 353 ---T~~~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~~---~~---~~~i~~~~~~~~l~~~ 416 (442)
T TIGR01134 353 ---TSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANG---RT---VEEIAKEIGADSLAYL 416 (442)
T ss_pred ---HHHHHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhcC---CC---HHHHHHHhCCCEEEEe
Confidence 2445678899999999998886 5665 454433211 22 2233334567776543
No 127
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=74.23 E-value=16 Score=32.90 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHhCCc-----eeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCe
Q 016576 77 TANPALSQEISCYMGLD-----LGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKN 151 (387)
Q Consensus 77 ~~~~~La~~ia~~lg~~-----l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~ 151 (387)
...-.+|..+|..|+.+ +.-+.-.+...|+......+..+|+.|+||....... --+.-.++.++++|++
T Consensus 63 ~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~~~~~g~~~~g~~VlIVDDvi~TG----~Tl~~a~~~l~~~Ga~- 137 (173)
T TIGR00336 63 LGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGNIEGELLEGDKVVVVEDVITTG----TSILEAVEIIQAAGGQ- 137 (173)
T ss_pred cChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCCCceecCCCCCCEEEEEeccccCh----HHHHHHHHHHHHcCCe-
Confidence 44669999999999988 4333222223355444334455899999997654322 2356677889999974
Q ss_pred EEEEeecC
Q 016576 152 ITAVIPYF 159 (387)
Q Consensus 152 it~viPY~ 159 (387)
+..++-.+
T Consensus 138 v~~~~vlv 145 (173)
T TIGR00336 138 VAGVIIAV 145 (173)
T ss_pred EEEEEEEE
Confidence 44444343
No 128
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=72.30 E-value=33 Score=32.91 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHH
Q 016576 138 LVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPV 217 (387)
Q Consensus 138 ll~i~a~r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~ 217 (387)
.-+++||+..|++||-++-||.+. + ...+.+.|++.|++-+-..-+ ....-+. +-.+. ...
T Consensus 109 ~A~~~AL~alg~~RIalvTPY~~~------------v-~~~~~~~l~~~G~eV~~~~~~---~~~~~~~--ia~i~-p~~ 169 (239)
T TIGR02990 109 SAAVDGLAALGVRRISLLTPYTPE------------T-SRPMAQYFAVRGFEIVNFTCL---GLTDDRE--MARIS-PDC 169 (239)
T ss_pred HHHHHHHHHcCCCEEEEECCCcHH------------H-HHHHHHHHHhCCcEEeeeecc---CCCCCce--eeecC-HHH
Confidence 346789999999999999999763 2 235778888889654432111 0000001 11111 233
Q ss_pred HHHHHHhhc-CCCCCeEEEecCCCchHHHHHHHHHcCCCCEE
Q 016576 218 ILDYLASKA-ISSDDLVVVSPDVGGVARARAFAKKLSDAPLA 258 (387)
Q Consensus 218 la~~L~~~~-~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~ 258 (387)
+.+.+.+.. .+-+-+++.+.....+.....+-..|+ .|+.
T Consensus 170 i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lG-kPVl 210 (239)
T TIGR02990 170 IVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIG-KPVV 210 (239)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHC-CCEE
Confidence 344444321 122335666788888888888888886 7764
No 129
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=72.24 E-value=24 Score=37.53 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=52.7
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcE-------------EEE---eCCCcCCceEEEEecCCCCChhh
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEI-------------YVQ---LQESVRGCHVFLVQPSCPPANEN 133 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~-------------~v~---i~~~vrg~dV~iiqs~~~~~nd~ 133 (387)
.+.+=--.+.-.+|..+|+.+|+++...-+++.--|.. ..+ +.+.++|+.|++|......-.
T Consensus 314 DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvIttGt-- 391 (500)
T PRK07349 314 DLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGT-- 391 (500)
T ss_pred cEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccCCCEEEEEeceeCCcH--
Confidence 34433334455889999999999987544433222211 112 245678999999965322211
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEe
Q 016576 134 IMELLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 134 lmeLll~i~a~r~~~a~~it~vi 156 (387)
-+.-++.+||++||+.|.+-+
T Consensus 392 --Tl~~~~~~Lr~aGAkeV~~~i 412 (500)
T PRK07349 392 --TSRKIVKALRDAGATEVHMRI 412 (500)
T ss_pred --HHHHHHHHHHHhCCeEEEEEe
Confidence 245577899999999998875
No 130
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=71.05 E-value=46 Score=32.06 Aligned_cols=86 Identities=13% Similarity=0.245 Sum_probs=56.8
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhC-----------Cce---eceEEeecCC----CcEEEEeC--CCcCCceEEEEecCC
Q 016576 69 TRLRIFS-GTANPALSQEISCYMG-----------LDL---GKIKIKRFAD----GEIYVQLQ--ESVRGCHVFLVQPSC 127 (387)
Q Consensus 69 ~~~~ifs-g~~~~~La~~ia~~lg-----------~~l---~~~~~~~F~D----GE~~v~i~--~~vrg~dV~iiqs~~ 127 (387)
+++.+++ .+..-.++..+.++|+ ++. .-+.++.|-| ||+.+.-. .++.|++|+||....
T Consensus 81 ~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~~~~l~gk~VLIVDDIi 160 (241)
T PTZ00149 81 EELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDDLSCLKDKHVLIVEDII 160 (241)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEecccccccCCCEEEEEEeEe
Confidence 3444444 5667778888888886 223 6677777755 56666532 468999999997653
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCeEEEEeec
Q 016576 128 PPANENIMELLVMIDACRRASAKNITAVIPY 158 (387)
Q Consensus 128 ~~~nd~lmeLll~i~a~r~~~a~~it~viPY 158 (387)
.. =--|..++++|++.|+++|.++.-+
T Consensus 161 dT----G~Tl~~~~~~L~~~g~~~V~va~L~ 187 (241)
T PTZ00149 161 DT----GNTLVKFCEYLKKFEPKTIRIATLF 187 (241)
T ss_pred Ch----HHHHHHHHHHHHhcCCCEEEEEEEE
Confidence 32 1224455677888999998766533
No 131
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=70.46 E-value=54 Score=30.17 Aligned_cols=84 Identities=13% Similarity=0.268 Sum_probs=57.1
Q ss_pred CcEEEEe-CCCCHHHHHHHHHHhCC--ceeceEEeecCCC-----cEEEE--eCCCcCCceEEEEecCCCCChhhHHHHH
Q 016576 69 TRLRIFS-GTANPALSQEISCYMGL--DLGKIKIKRFADG-----EIYVQ--LQESVRGCHVFLVQPSCPPANENIMELL 138 (387)
Q Consensus 69 ~~~~ifs-g~~~~~La~~ia~~lg~--~l~~~~~~~F~DG-----E~~v~--i~~~vrg~dV~iiqs~~~~~nd~lmeLl 138 (387)
+.+.+++ ...+-.++..++.++++ ++.-+.+..|-+| +.++. +.++++|+||.||...-... .-|-
T Consensus 35 ~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDsG----~TLs 110 (178)
T COG0634 35 KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSG----LTLS 110 (178)
T ss_pred CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccccC----hhHH
Confidence 4555555 56677888888888764 4567777888665 55554 35899999999996543221 1245
Q ss_pred HHHHHHHhcCCCeEEEEe
Q 016576 139 VMIDACRRASAKNITAVI 156 (387)
Q Consensus 139 l~i~a~r~~~a~~it~vi 156 (387)
.+.+-|+..+|+++.++.
T Consensus 111 ~i~~~l~~r~a~sv~i~t 128 (178)
T COG0634 111 KVRDLLKERGAKSVRIAT 128 (178)
T ss_pred HHHHHHHhCCCCeEEEEE
Confidence 556667778999988664
No 132
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=66.80 E-value=13 Score=31.94 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=33.3
Q ss_pred ecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE
Q 016576 276 IGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 276 ~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
.++++|++++|+ -+|++-..++..|.+.|+++|+++.
T Consensus 7 ~~~l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 7 FGDLKGKRVLVI----GAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp HSTGTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCCcCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 468899999987 4799999999999999999999886
No 133
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=66.04 E-value=34 Score=36.39 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=51.5
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCc-------------EEEE---eCCCcCCceEEEEecCCCCChhh
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGE-------------IYVQ---LQESVRGCHVFLVQPSCPPANEN 133 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE-------------~~v~---i~~~vrg~dV~iiqs~~~~~nd~ 133 (387)
.+.+---.+...+|..+|+.+|+++..--+++---|- ++.+ +...++|++|+||......-. .
T Consensus 295 D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitTGa-T 373 (501)
T PRK09246 295 DVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGT-T 373 (501)
T ss_pred cEEEEeCccHHHHHHHHHHHHCCCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEeccccccH-H
Confidence 3444444455689999999999988643222211111 1111 235688999999865432221 1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEe
Q 016576 134 IMELLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 134 lmeLll~i~a~r~~~a~~it~vi 156 (387)
|--++.+||++||++|.+.+
T Consensus 374 ---l~~~~~~L~~aGA~~V~v~v 393 (501)
T PRK09246 374 ---SEQIVQMAREAGAKKVYFAS 393 (501)
T ss_pred ---HHHHHHHHHHcCCCEEEEEE
Confidence 34477899999999998775
No 134
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=64.65 E-value=38 Score=28.09 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=49.4
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCC
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 149 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a 149 (387)
++.+++.-.+..+|+.++.+|.. ++... .-..|+|....-...++-.|++|+=|.+.. + -|++-++..+|+.|+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~-~g~~~-~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~-t---~~~~~~~~~a~~~g~ 75 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSS-TGTPA-FFLHPTEALHGDLGMVTPGDVVIAISNSGE-T---DELLNLLPHLKRRGA 75 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhc-CCCce-EEcccchhhccccCcCCCCCEEEEEeCCCC-C---HHHHHHHHHHHHCCC
Confidence 46677766777889998888743 33322 334666654444445566788888776432 3 345666677888887
Q ss_pred CeEEE
Q 016576 150 KNITA 154 (387)
Q Consensus 150 ~~it~ 154 (387)
+-|.+
T Consensus 76 ~vi~i 80 (128)
T cd05014 76 PIIAI 80 (128)
T ss_pred eEEEE
Confidence 65543
No 135
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=64.25 E-value=19 Score=37.72 Aligned_cols=117 Identities=26% Similarity=0.305 Sum_probs=68.7
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEeec--------CCC---cEEEEe-----CCCcCCceEEEEecCCCCChhh
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIKRF--------ADG---EIYVQL-----QESVRGCHVFLVQPSCPPANEN 133 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F--------~DG---E~~v~i-----~~~vrg~dV~iiqs~~~~~nd~ 133 (387)
.+.+=--.++..-|-..|+.+|+++..--++.= |.. |.-|++ .+.|+||.|++|.. .
T Consensus 285 DvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDD-------S 357 (470)
T COG0034 285 DVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDD-------S 357 (470)
T ss_pred cEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhCCCeEEEEcc-------c
Confidence 455545567778999999999998764444322 232 222332 25578999999843 2
Q ss_pred HHH---HHHHHHHHHhcCCCeEEEEe-------e-cCccccchhhccCCccchHH-HHHHHHHHhCCCEEEEecCC
Q 016576 134 IME---LLVMIDACRRASAKNITAVI-------P-YFGYARADRKTQGRESIAAK-LVANLITEAGANRVLACDLH 197 (387)
Q Consensus 134 lme---Lll~i~a~r~~~a~~it~vi-------P-Y~~YsRqDr~~~~~e~isak-~vA~lL~~~G~d~VitvDlH 197 (387)
++. .-.+++.+|++|||.|.+-+ | ||+---++|+ |-|.+. .+-++=...|+|.+.-.++-
T Consensus 358 IVRGTTsr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~----eLIA~~~~~eeI~~~IgaDSL~yLsle 429 (470)
T COG0034 358 IVRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTRE----ELIAANRTVEEIRKAIGADSLAYLSLE 429 (470)
T ss_pred cccCccHHHHHHHHHHhCCCEEEEEecCCCccCCCccccCCCCHH----HHhhCCCCHHHHHHHhCCCceeeecHH
Confidence 221 33566778999999999776 2 3443333332 122221 23333344588888776653
No 136
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=63.95 E-value=36 Score=36.00 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=52.6
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCceeceEEe-ecC-------CC-------cEEEE-eCCCcCCceEEEEecCCCCChh
Q 016576 69 TRLRIFSGTANPALSQEISCYMGLDLGKIKIK-RFA-------DG-------EIYVQ-LQESVRGCHVFLVQPSCPPANE 132 (387)
Q Consensus 69 ~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~-~F~-------DG-------E~~v~-i~~~vrg~dV~iiqs~~~~~nd 132 (387)
-.+.+---.+...+|..+|+.+|++....-++ ++. +. +.... +.+.++|+.|++|......-.
T Consensus 284 ~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk~VlLVDDvittGt- 362 (471)
T PRK06781 284 ADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGT- 362 (471)
T ss_pred CcEEEEcChhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCceEEEEeceeccch-
Confidence 34444444455688999999999988653222 221 21 11122 245678999999865322111
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEe
Q 016576 133 NIMELLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 133 ~lmeLll~i~a~r~~~a~~it~vi 156 (387)
- +--++.+||++||++|.+.+
T Consensus 363 -T--l~~~~~~Lk~aGA~eV~v~i 383 (471)
T PRK06781 363 -T--SKRIVRMLREAGATEVHVRI 383 (471)
T ss_pred -H--HHHHHHHHHHcCCcEEEEEE
Confidence 1 34578899999999999887
No 137
>PRK11595 DNA utilization protein GntX; Provisional
Probab=60.19 E-value=30 Score=32.56 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCceeceEEee--c-------------CCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHH
Q 016576 80 PALSQEISCYMGLDLGKIKIKR--F-------------ADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDAC 144 (387)
Q Consensus 80 ~~La~~ia~~lg~~l~~~~~~~--F-------------~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~ 144 (387)
..||+.+|+.+|++...--+.+ . .|-.-...+..+++|++|+||........ -+.-++++|
T Consensus 135 ~~la~~la~~~~~~~~~~~l~r~~~~~~q~~l~~~~R~~n~~~~f~~~~~~~~~~vllvDDv~tTG~----Tl~~~~~~L 210 (227)
T PRK11595 135 DLLCRPLARWLGCDYDSEALTRTRATATQHFLSARLRKRNLKNAFRLELPVQGQHMAIVDDVVTTGS----TVAEIAQLL 210 (227)
T ss_pred HHHHHHHHHHHCCCCcccceEEecCCCCcccCCHHHHhhhhhhhhccCCCCCCCEEEEEeeeecchH----HHHHHHHHH
Confidence 3789999999998764221221 1 11111222345688999999866433221 245567888
Q ss_pred HhcCCCeEEEE
Q 016576 145 RRASAKNITAV 155 (387)
Q Consensus 145 r~~~a~~it~v 155 (387)
+++|+++|.++
T Consensus 211 ~~~g~~~V~~~ 221 (227)
T PRK11595 211 LRNGAASVQVW 221 (227)
T ss_pred HHcCCcEEEEE
Confidence 99999998765
No 138
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=59.84 E-value=59 Score=29.82 Aligned_cols=73 Identities=14% Similarity=0.177 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeecCCC------------cE--EEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHH
Q 016576 77 TANPALSQEISCYMGLDLGKIKIKRFADG------------EI--YVQLQESVRGCHVFLVQPSCPPANENIMELLVMID 142 (387)
Q Consensus 77 ~~~~~La~~ia~~lg~~l~~~~~~~F~DG------------E~--~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~ 142 (387)
...-.||..+|..+++++....-.+++.. .+ .+......+|++|+||...-.... -+.-+++
T Consensus 60 ~~Gi~lA~~vA~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~----T~~~ai~ 135 (187)
T PRK12560 60 DKGAPLATPVSLLSGKPLAMARWYPYSLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGG----TVIALIK 135 (187)
T ss_pred cccHHHHHHHHHhhCCCEEEeccCCCcccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCH----HHHHHHH
Confidence 45679999999999998755543332222 11 132333458999999976533222 1466778
Q ss_pred HHHhcCCCeEE
Q 016576 143 ACRRASAKNIT 153 (387)
Q Consensus 143 a~r~~~a~~it 153 (387)
.++++||..+-
T Consensus 136 ll~~aGa~vv~ 146 (187)
T PRK12560 136 AIENSGGIVSD 146 (187)
T ss_pred HHHHCCCEEEE
Confidence 89999986543
No 139
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=57.52 E-value=9.6 Score=35.22 Aligned_cols=43 Identities=37% Similarity=0.608 Sum_probs=37.8
Q ss_pred eeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc
Q 016576 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA 319 (387)
Q Consensus 274 ~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 319 (387)
-+.||.+.+..+|||.+..| ...-++.+++.|-+-+|++-||-
T Consensus 24 Yll~d~~~~~AviIDPV~et---~~RD~qlikdLgl~LiYa~NTH~ 66 (237)
T KOG0814|consen 24 YLLGDHKTGKAVIIDPVLET---VSRDAQLIKDLGLDLIYALNTHV 66 (237)
T ss_pred EEeeeCCCCceEEecchhhc---ccchHHHHHhcCceeeeeeccee
Confidence 46789999999999999976 56678889999999999999986
No 140
>PF06300 Tsp45I: Tsp45I type II restriction enzyme; InterPro: IPR010443 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases such as Tsp45I, which recognises the DNA sequence 5' GTSAC, cleaving prior to G-1 [].
Probab=56.77 E-value=33 Score=32.88 Aligned_cols=159 Identities=14% Similarity=0.259 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCcc-c
Q 016576 131 NENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIP-V 209 (387)
Q Consensus 131 nd~lmeLll~i~a~r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ip-v 209 (387)
+-+|++.||-.+ ..-.==||+||-|.|+..-.+.|-|.+.+|..|.++|.+.|+- .. ..| .
T Consensus 53 ~~~li~~lL~~~--------lfPikdsYvayLkrdksAlernP~Ti~ri~g~l~emGl~~i~e---------k~-t~PkE 114 (261)
T PF06300_consen 53 STKLIKSLLNLD--------LFPIKDSYVAYLKRDKSALERNPETINRICGRLYEMGLDKIYE---------KC-TEPKE 114 (261)
T ss_pred hHHHHHHHHhcc--------cCccCcchHHHHHhhHHHHhcCcHHHHHHHHHHHHHhHHHHHH---------Hc-CCCch
Confidence 456777665522 2222348999999999888899999999999999999988752 00 112 2
Q ss_pred ccccchHHHHHHHHhhcCC------------CCCeEEEecCCCchHHHHHHHHH-cC---CCCEEEEEEeecCCCeeEEE
Q 016576 210 DHVYGQPVILDYLASKAIS------------SDDLVVVSPDVGGVARARAFAKK-LS---DAPLAIVDKRRQGHNVAEVM 273 (387)
Q Consensus 210 d~L~a~~~la~~L~~~~~~------------~~~~vVVspd~Ggv~rA~~lA~~-L~---~~~~~~v~K~R~~~~~~e~~ 273 (387)
.|=.-.|++-+|+.+..++ .++.++ .|+-.-...+|+. || +..+.++.|.+...-..|.
T Consensus 115 tNRQIGPlFk~W~~~~~lG~~p~~~~~fl~~~~~~Il----~asD~~mk~fAk~~Lgy~~~KGlDFia~fn~k~iigEa- 189 (261)
T PF06300_consen 115 TNRQIGPLFKNWINSGALGVEPVDQNDFLNNKENAIL----NASDKAMKDFAKEYLGYNRNKGLDFIAKFNGKYIIGEA- 189 (261)
T ss_pred hcchhhHHHHHHHhccccCCCCCChhHHHhcccCeeE----eccHHHHHHHHHHhcCCccccCceeEEEecCeEEEEEE-
Confidence 2333456666666543211 123333 4455555666653 43 2234455444321111111
Q ss_pred eeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCC
Q 016576 274 NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFS 322 (387)
Q Consensus 274 ~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs 322 (387)
....|.-|- --.-+..|+..++..+-+.|.++..-|++-
T Consensus 190 KFltDfGGH----------QnaQ~~dAi~ti~~~~~~~ikIaIlDGvly 228 (261)
T PF06300_consen 190 KFLTDFGGH----------QNAQFNDAISTIRSPNKNVIKIAILDGVLY 228 (261)
T ss_pred EeecccCCc----------chHHHHHHHHHhcCCCcCeEEEEEecceeE
Confidence 112233332 234566777777777777777777777653
No 141
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=56.51 E-value=1.1e+02 Score=30.33 Aligned_cols=97 Identities=21% Similarity=0.356 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCchhcccccCccccc---ccchHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcC
Q 016576 177 KLVANLITEAGANRVLACDLHSGQSMGYFDIPVDH---VYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLS 253 (387)
Q Consensus 177 k~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~---L~a~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~ 253 (387)
+++.++=+.-| .+||++ .|.....++|.+|+.. +.-.+.+.+.|.+...+..-.+++-..-|-+.-|..+++.+.
T Consensus 38 ~~i~~ie~kr~-srvI~~-Ihrqe~~~~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l~ 115 (285)
T PF01972_consen 38 RLIREIEEKRG-SRVITL-IHRQERVSFLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARALR 115 (285)
T ss_pred HHHHHHHHHhC-CEEEEE-EEeccccceeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHHH
Confidence 34444444444 788886 5766666888888643 334556677776542111223455555555666777777664
Q ss_pred CCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHH
Q 016576 254 DAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISK 299 (387)
Q Consensus 254 ~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~ 299 (387)
. -.++..++|-+-.-+|||+.+
T Consensus 116 ~------------------------~~~~v~v~VP~~A~SAGTlIA 137 (285)
T PF01972_consen 116 E------------------------HPAKVTVIVPHYAMSAGTLIA 137 (285)
T ss_pred h------------------------CCCCEEEEECcccccHHHHHH
Confidence 1 123455666777777777765
No 142
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=56.51 E-value=7.1 Score=32.42 Aligned_cols=83 Identities=14% Similarity=0.265 Sum_probs=54.2
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHh
Q 016576 67 NDTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRR 146 (387)
Q Consensus 67 ~~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~ 146 (387)
..+++.+++.-++..+|+..+.+| .+++.....-++.+|..-.....+.-.|++|+=|.+. .+.+ ++-.+..+|+
T Consensus 4 ~~~~i~i~G~G~s~~~A~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg-~~~~---~~~~~~~ak~ 78 (131)
T PF01380_consen 4 KAKRIYIYGSGSSYGVAQYAALKL-QKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSG-ETRE---LIELLRFAKE 78 (131)
T ss_dssp TSSEEEEEESTHHHHHHHHHHHHH-HHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSS-TTHH---HHHHHHHHHH
T ss_pred CCCEEEEEEcchHHHHHHHHHHHH-HHhcCcceeccchHHHhhhhcccccccceeEeeeccc-cchh---hhhhhHHHHh
Confidence 356788888777888999999988 5666666666666664333344555668777766433 2344 4444557788
Q ss_pred cCCCeEEE
Q 016576 147 ASAKNITA 154 (387)
Q Consensus 147 ~~a~~it~ 154 (387)
.|++-|.+
T Consensus 79 ~g~~vi~i 86 (131)
T PF01380_consen 79 RGAPVILI 86 (131)
T ss_dssp TTSEEEEE
T ss_pred cCCeEEEE
Confidence 88766443
No 143
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=55.89 E-value=1.5e+02 Score=26.75 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEeec--CCCcE--------------EEE---eCCCcCCceEEEEecCCCCChhhHHH
Q 016576 76 GTANPALSQEISCYMGLDLGKIKIKRF--ADGEI--------------YVQ---LQESVRGCHVFLVQPSCPPANENIME 136 (387)
Q Consensus 76 g~~~~~La~~ia~~lg~~l~~~~~~~F--~DGE~--------------~v~---i~~~vrg~dV~iiqs~~~~~nd~lme 136 (387)
..+.-.+|..+|+.||+++.-+.-.+- .+++. ... ....++|++|+||.......+ .
T Consensus 60 ~~gGiplA~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~-T--- 135 (178)
T PRK07322 60 ETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGG-T--- 135 (178)
T ss_pred ccCCHHHHHHHHHHHCCCEEEEEEeCCCCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccH-H---
Confidence 445678999999999999754432221 22211 110 012368999999976543322 2
Q ss_pred HHHHHHHHHhcCCCeEEEEeecCccccch
Q 016576 137 LLVMIDACRRASAKNITAVIPYFGYARAD 165 (387)
Q Consensus 137 Lll~i~a~r~~~a~~it~viPY~~YsRqD 165 (387)
+.-+++.+|++||+.+. +.=.+.|+.++
T Consensus 136 l~aa~~~L~~~GA~~V~-~~~v~~~~~~~ 163 (178)
T PRK07322 136 LTALERLVERAGGQVVA-KAAIFAEGDAS 163 (178)
T ss_pred HHHHHHHHHHcCCEEEE-EEEEEEcCCCC
Confidence 34667778999997654 33444555554
No 144
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=53.01 E-value=76 Score=29.69 Aligned_cols=72 Identities=7% Similarity=0.014 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHhCCceeceEEeecCCCcE-EEEeCC-CcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEE
Q 016576 78 ANPALSQEISCYMGLDLGKIKIKRFADGEI-YVQLQE-SVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNIT 153 (387)
Q Consensus 78 ~~~~La~~ia~~lg~~l~~~~~~~F~DGE~-~v~i~~-~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it 153 (387)
..-.+|..+|..+|+++.-..-..--.|+. .+++.. ..+|++|+||...-.... . +.-.+++++++|++-+.
T Consensus 77 ~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG~-T---i~~a~~~L~~~G~~vv~ 150 (206)
T PRK13809 77 TALTLATSISLKYNIPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSGK-S---IIETAVALEEEGLVVRE 150 (206)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccCH-H---HHHHHHHHHHCCCEEEE
Confidence 356899999999999887655422233443 333333 358999999965432221 1 45567888889987443
No 145
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=52.94 E-value=67 Score=34.02 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=50.6
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEe-e-----cCCC-----cE----EEE-eCCCcCCceEEEEecCCCCChhh
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIK-R-----FADG-----EI----YVQ-LQESVRGCHVFLVQPSCPPANEN 133 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~-~-----F~DG-----E~----~v~-i~~~vrg~dV~iiqs~~~~~nd~ 133 (387)
.+.+---.+...+|..+|+.+|+++...-++ + |..- +. .+. +.+.++||.|++|...--. -.
T Consensus 285 D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~gk~VlLVDDsitt--Gt 362 (475)
T PRK07631 285 DVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIVR--GT 362 (475)
T ss_pred cEEEEechhHHHHHHHHHHHHCCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCCceEEEEeeeecc--HH
Confidence 3443333445579999999999998653333 2 2221 10 111 1356789999998543211 11
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEe
Q 016576 134 IMELLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 134 lmeLll~i~a~r~~~a~~it~vi 156 (387)
- |--++.+||++||++|.+.+
T Consensus 363 T--l~~~~~~L~~aGA~eV~v~~ 383 (475)
T PRK07631 363 T--SRRIVTMLREAGATEVHVRI 383 (475)
T ss_pred H--HHHHHHHHHHcCCCEEEEEE
Confidence 2 33567889999999999887
No 146
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=50.35 E-value=1.1e+02 Score=31.39 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHhCCceeceE--EeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEe
Q 016576 79 NPALSQEISCYMGLDLGKIK--IKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 79 ~~~La~~ia~~lg~~l~~~~--~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~vi 156 (387)
|-..|-.+|..||+++..+. +..|.--+-+.++.+ .+.-.+|..|-.. | --.+.-.+++++... .++.+|+
T Consensus 258 N~laAia~~~~lGi~~~~i~~~l~~~~~~~gR~e~~~--~~~~~vidDsya~--n--p~s~~~al~~l~~~~-~r~i~Vl 330 (417)
T TIGR01143 258 NALAAAALALELGIPLEEIAEGLAELKLVKGRFEIQT--KNGLTLIDDTYNA--N--PDSMRAALDALARFP-GKKILVL 330 (417)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceeEEc--CCCcEEEEcCCCC--C--HHHHHHHHHHHHhCC-CCEEEEE
Confidence 34567778888999887665 566653222333221 1222344443321 2 223444456666544 4667776
Q ss_pred ecCc--cccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhc
Q 016576 157 PYFG--YARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQS 201 (387)
Q Consensus 157 PY~~--YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~ 201 (387)
--+. =.|.+. --+.+++.+...++|.|+.+.-+...+
T Consensus 331 G~~~e~G~~~~~--------~~~~l~~~~~~~~~d~vi~~g~~~~~~ 369 (417)
T TIGR01143 331 GDMAELGEYSEE--------LHAEVGRYANSLGIDLVFLVGEEAAVI 369 (417)
T ss_pred cCchhcChHHHH--------HHHHHHHHHHHcCCCEEEEECHHHHHH
Confidence 5431 111111 123577777777789999887655433
No 147
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=49.52 E-value=1.8e+02 Score=32.75 Aligned_cols=241 Identities=14% Similarity=0.172 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHhCCceeceE--EeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCC-CeEEEE
Q 016576 79 NPALSQEISCYMGLDLGKIK--IKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA-KNITAV 155 (387)
Q Consensus 79 ~~~La~~ia~~lg~~l~~~~--~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a-~~it~v 155 (387)
|-..|-.+|..+|++...+. +..|.-=+-+.++-....| -++|..|- |.+--.+.-.++++++... +++++|
T Consensus 290 NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~~~~g-~~vIdDSy----n~nP~s~~aaL~~l~~~~~~~~~ilI 364 (822)
T PRK11930 290 NLIHCIAVLLYLGYSADQIQERMARLEPVAMRLEVKEGINN-CTLINDSY----NSDLQSLDIALDFLNRRSQSKKKTLI 364 (822)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCeeEEEEcCCC-cEEEECCC----CCCHHHHHHHHHHHHhcccCCCEEEE
Confidence 33456677788999887765 5666543334443322112 23444432 2234445555677765432 466777
Q ss_pred eecCccccchhhccCCc--cchHHHHHHHHHHhCCCEEEEecCCchhcccccC-cccccccchHHHHHHHHhhcCCCCCe
Q 016576 156 IPYFGYARADRKTQGRE--SIAAKLVANLITEAGANRVLACDLHSGQSMGYFD-IPVDHVYGQPVILDYLASKAISSDDL 232 (387)
Q Consensus 156 iPY~~YsRqDr~~~~~e--~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~-ipvd~L~a~~~la~~L~~~~~~~~~~ 232 (387)
+.=+. +.|+ .-.-+.+++.+...++++|+.+.-+.......+. .+.......+.+.+++.+.. ...+.
T Consensus 365 lG~m~--------elG~~~~~~~~~l~~~l~~~~i~~vi~~G~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~-~~gDv 435 (822)
T PRK11930 365 LSDIL--------QSGQSPEELYRKVAQLISKRGIDRLIGIGEEISSEASKFEGTEKEFFKTTEAFLKSFAFLK-FRNEL 435 (822)
T ss_pred ECChH--------hcCchHHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHhcCccccEEECCHHHHHHHHHHhc-CCCCE
Confidence 65211 1121 1223457777777789999998765433322122 12222233555666666543 23344
Q ss_pred EEEecCCCchHHHHHHHHHcC---CCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCC
Q 016576 233 VVVSPDVGGVARARAFAKKLS---DAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGA 309 (387)
Q Consensus 233 vVVspd~Ggv~rA~~lA~~L~---~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA 309 (387)
|++ --.++..+ ..+.+.|. +-....++..+-.+|...+....+ .+.++.-|==--..|.-+.++++.|.++|+
T Consensus 436 VLl-KGSr~~~l-e~i~~~~~~~~~~~~~~Idl~al~~N~~~i~~~~~--~~~k~~aVvKa~aYGhG~~~va~~l~~~G~ 511 (822)
T PRK11930 436 ILV-KGARKFEF-EQITELLEQKVHETVLEINLNAIVHNLNYYRSKLK--PETKIMCMVKAFAYGSGSYEIAKLLQEHRV 511 (822)
T ss_pred EEE-EcCCCCCH-HHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHhhCC--CCCEEEEEEeeccccCCHHHHHHHHHHCCC
Confidence 444 33344333 23333321 122222332221111110000000 011122111111356667788889988998
Q ss_pred cEEEEEEEcccCChhHHHHHhcCCCC-EEEEeCCC
Q 016576 310 REVYACSTHAVFSPPAIERLSSGLFQ-EVIITNTI 343 (387)
Q Consensus 310 ~~V~v~~tHgvfs~~A~e~L~~s~i~-~IvvTnTi 343 (387)
....+... .+|. .|.+.+++ .|.+...+
T Consensus 512 ~~f~Va~l-----~Ea~-~lr~~g~~~~Ilvl~~~ 540 (822)
T PRK11930 512 DYLAVAYA-----DEGV-SLRKAGITLPIMVMNPE 540 (822)
T ss_pred CEEEEeeH-----HHHH-HHHhcCCCCCEEEEeCC
Confidence 86655542 3443 45666665 66666553
No 148
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=49.50 E-value=30 Score=26.45 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=28.7
Q ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE
Q 016576 279 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 279 V~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
-+++.+|+++ .+|.....++..|++.|-..|+.+-
T Consensus 54 ~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~~l~ 88 (100)
T smart00450 54 DKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVYLLD 88 (100)
T ss_pred CCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceEEec
Confidence 3578899998 5788888999999999999877553
No 149
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=49.49 E-value=1.8e+02 Score=27.04 Aligned_cols=82 Identities=20% Similarity=0.294 Sum_probs=59.1
Q ss_pred cEEEEe-CCCCHHHHHHHHHHh-CCceeceEEeecCCC----cEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHH
Q 016576 70 RLRIFS-GTANPALSQEISCYM-GLDLGKIKIKRFADG----EIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDA 143 (387)
Q Consensus 70 ~~~ifs-g~~~~~La~~ia~~l-g~~l~~~~~~~F~DG----E~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a 143 (387)
++.+++ ..+...+.+.+.+.+ +.+.+.+-+.+=++. +.|.++++++.++.|+++.++....+. +...++.
T Consensus 68 ~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s----~~~ai~~ 143 (207)
T PF14681_consen 68 KICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGS----AIAAIEI 143 (207)
T ss_dssp CEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHH----HHHHHHH
T ss_pred cEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhh----HHHHHHH
Confidence 566655 677778999988886 578888888775533 467888999999999999887665544 4556777
Q ss_pred HHhcCC--CeEEEE
Q 016576 144 CRRASA--KNITAV 155 (387)
Q Consensus 144 ~r~~~a--~~it~v 155 (387)
+++.|+ ++|+++
T Consensus 144 L~~~G~~~~~I~~v 157 (207)
T PF14681_consen 144 LKEHGVPEENIIIV 157 (207)
T ss_dssp HHHTTG-GGEEEEE
T ss_pred HHHcCCCcceEEEE
Confidence 788776 577655
No 150
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=49.02 E-value=33 Score=25.93 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=29.0
Q ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE
Q 016576 279 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 279 V~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
-+++.|+++++- |.....++..|++.|-.+|+.+.
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~~l~ 82 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVYNLE 82 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEEEec
Confidence 367889998886 77888899999999988888654
No 151
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.97 E-value=67 Score=33.11 Aligned_cols=154 Identities=12% Similarity=0.139 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHhCCceeceE--EeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEe
Q 016576 79 NPALSQEISCYMGLDLGKIK--IKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 79 ~~~La~~ia~~lg~~l~~~~--~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~vi 156 (387)
|-..|-.+|..+|++...+. +..|..-+-+.++-....|. .||-.+ .+.| .--+.-.++++++...+++++|+
T Consensus 277 NalaAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~gv-~~idDs--~atN--~~a~~~al~~l~~~~~~~iilI~ 351 (448)
T PRK03803 277 NALAALALGEAAGLPKEAMLEVLRTFTGLPHRCEWVREVAGV-DYYNDS--KGTN--VGATVAAIEGLGAHIQGKLVLIA 351 (448)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEeCCe-EEEEcC--CcCC--HHHHHHHHHhhhhcCCCCEEEEE
Confidence 33567777888898877665 56776555555543223332 344433 2333 33344445555432225788887
Q ss_pred ecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccC--cccccccchHHHHHHHHhhcCCCCCeEE
Q 016576 157 PYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFD--IPVDHVYGQPVILDYLASKAISSDDLVV 234 (387)
Q Consensus 157 PY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~--ipvd~L~a~~~la~~L~~~~~~~~~~vV 234 (387)
--+. .|.-++ .+.+++... ++.++.+..+...+...+. .++..........+++.+.. ...+.++
T Consensus 352 Gg~~---k~~d~~--------~l~~~l~~~-~~~vil~G~~~~~i~~~l~~~~~~~~~~~~~~a~~~a~~~a-~~gdvVL 418 (448)
T PRK03803 352 GGDG---KGADFS--------PLREPVAKY-VRAVVLIGRDADKIAAALGGAVPLVRVATLAEAVAKAAELA-QAGDIVL 418 (448)
T ss_pred CCCC---CCCCHH--------HHHHHHHhh-CCEEEEECCCHHHHHHHHhcCCCEEEeCCHHHHHHHHHHhC-CCCCEEE
Confidence 4321 122211 144444433 6788887766554432221 12211122333444443322 3457899
Q ss_pred EecCCCchHHHHHHHH
Q 016576 235 VSPDVGGVARARAFAK 250 (387)
Q Consensus 235 Vspd~Ggv~rA~~lA~ 250 (387)
++|..++...-+.+.+
T Consensus 419 ~SPa~aSfd~f~~~~~ 434 (448)
T PRK03803 419 LSPACASLDMFKNFEA 434 (448)
T ss_pred eCchhhcccccCCHHH
Confidence 9999988766555544
No 152
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=48.86 E-value=1.3e+02 Score=32.28 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=52.2
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCceeceEEee-c-------CC---CcEEEEe-----CCCcCCceEEEEecCCCCChhhH
Q 016576 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKR-F-------AD---GEIYVQL-----QESVRGCHVFLVQPSCPPANENI 134 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~-F-------~D---GE~~v~i-----~~~vrg~dV~iiqs~~~~~nd~l 134 (387)
+.+---.+....|..+|+.+|++....-++. + |. -+..+++ .+.+.||.|++|......- ..
T Consensus 305 ~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~gk~vllVDD~ittG--~T 382 (510)
T PRK07847 305 LVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVRG--NT 382 (510)
T ss_pred EEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhhhceeeecCccccccCCCEEEEEecccCch--HH
Confidence 4433334456889999999999986643321 1 12 1123333 3457899999986532221 11
Q ss_pred HHHHHHHHHHHhcCCCeEEEEe
Q 016576 135 MELLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 135 meLll~i~a~r~~~a~~it~vi 156 (387)
+.-++..||++||++|.+-+
T Consensus 383 --~~~~~~~L~~~ga~~v~~ri 402 (510)
T PRK07847 383 --QRALVRMLREAGAAEVHVRI 402 (510)
T ss_pred --HHHHHHHHHHcCCCEEEEEE
Confidence 44678899999999999887
No 153
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.55 E-value=37 Score=30.18 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCC
Q 016576 296 TISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNT 342 (387)
Q Consensus 296 Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnT 342 (387)
.+..+.+.|+++|+..|.+++ =|+.+.+-.++|++.++++|+.-.|
T Consensus 79 l~~~lve~lre~G~~~i~v~~-GGvip~~d~~~l~~~G~~~if~pgt 124 (143)
T COG2185 79 LVPGLVEALREAGVEDILVVV-GGVIPPGDYQELKEMGVDRIFGPGT 124 (143)
T ss_pred HHHHHHHHHHHhCCcceEEee-cCccCchhHHHHHHhCcceeeCCCC
Confidence 356788999999999999555 3788887788899999999995543
No 154
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=48.15 E-value=1e+02 Score=28.61 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeecCCCcE------EEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCC
Q 016576 77 TANPALSQEISCYMGLDLGKIKIKRFADGEI------YVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAK 150 (387)
Q Consensus 77 ~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~------~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 150 (387)
.+.-+||..+|..||.++.-..-+++-..|- .=+--.+|.||+++||...-.. -..++| .|..+|+.|+|
T Consensus 95 ~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDDvitt-G~Ti~E---~Ie~lke~g~k 170 (203)
T COG0856 95 ISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVITT-GSTIKE---TIEQLKEEGGK 170 (203)
T ss_pred ecCccHHHHHHHHhCCceEEEecccccccccCCcCceeecccccccCceEEEEeccccc-ChhHHH---HHHHHHHcCCC
Confidence 3455899999999999988777666655432 1122247899999999765332 345666 46788899987
Q ss_pred eEEEE
Q 016576 151 NITAV 155 (387)
Q Consensus 151 ~it~v 155 (387)
-+.++
T Consensus 171 pv~v~ 175 (203)
T COG0856 171 PVLVV 175 (203)
T ss_pred cEEEE
Confidence 44433
No 155
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=47.65 E-value=1.9e+02 Score=30.19 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHhCCceeceE--EeecC--CCcEE-EEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhc---CCC
Q 016576 79 NPALSQEISCYMGLDLGKIK--IKRFA--DGEIY-VQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRA---SAK 150 (387)
Q Consensus 79 ~~~La~~ia~~lg~~l~~~~--~~~F~--DGE~~-v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~---~a~ 150 (387)
|-..|-.+|..+|+++..+. +.+|. .|=.. +++. +.+..+.+|...+ |-+--++--.++++++. ..+
T Consensus 295 NalaAia~a~~lGi~~~~i~~~l~~~~~~~gR~~~~r~~--~~~~~~~iIDDsY---ahnP~s~~aaL~~l~~~~~~~~~ 369 (479)
T PRK14093 295 NSLAVLAAAELAGADLALAALALSQVQPAAGRGVRHTLE--VGGGEATLIDESY---NANPASMAAALGVLGRAPVGPQG 369 (479)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCCcCCcceEEEee--cCCCCEEEEECCC---CCCHHHHHHHHHHHHhhhccCCC
Confidence 33556677888999987765 56774 34211 2222 1123355665322 22333445555666654 234
Q ss_pred eEEEEeecC--ccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCch
Q 016576 151 NITAVIPYF--GYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSG 199 (387)
Q Consensus 151 ~it~viPY~--~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~ 199 (387)
++++|+.=| -|+|.++. -+.+++.+...++|.|+.+..++.
T Consensus 370 r~i~V~G~m~elg~~~~~~--------h~~~~~~~~~~~~d~v~~~G~~~~ 412 (479)
T PRK14093 370 RRIAVLGDMLELGPRGPEL--------HRGLAEAIRANAIDLVFCCGPLMR 412 (479)
T ss_pred CEEEEECChHHcCcHHHHH--------HHHHHHHHHHcCCCEEEEEchhHH
Confidence 666666432 24443322 257888888889999999986553
No 156
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=47.37 E-value=2.2e+02 Score=29.96 Aligned_cols=164 Identities=19% Similarity=0.284 Sum_probs=96.1
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCC---------cEEEEeC----CCcCCceEEEEecCCCCChhhH
Q 016576 68 DTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADG---------EIYVQLQ----ESVRGCHVFLVQPSCPPANENI 134 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DG---------E~~v~i~----~~vrg~dV~iiqs~~~~~nd~l 134 (387)
.+++.|+..--+..=+.+...+.|.+..-...+.++.+ .+.+... +.....|+++..+.-++.+.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p-- 84 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP-- 84 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH--
Confidence 56677787444444445555667777777776777721 1222222 23445689988777666554
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeecCccccchhhc-----cCCccchHHHHHHHHHHhCC---------------------
Q 016576 135 MELLVMIDACRRASAKNITAVIPYFGYARADRKT-----QGRESIAAKLVANLITEAGA--------------------- 188 (387)
Q Consensus 135 meLll~i~a~r~~~a~~it~viPY~~YsRqDr~~-----~~~e~isak~vA~lL~~~G~--------------------- 188 (387)
++.+++..|+.=++ -|-.|..-+-..+. ..|-.-+..+++.||++.|.
T Consensus 85 -----~v~~A~~~gi~i~~-dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~~ 158 (448)
T COG0771 85 -----LVEAAKAAGIEIIG-DIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAEP 158 (448)
T ss_pred -----HHHHHHHcCCcEEe-HHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccCC
Confidence 56677777765333 22222221111111 35667888899999998765
Q ss_pred CEEEEecCCchhcccc----------cCcccccccchHHHHHHHHhhc--CCCCC-eEEEecCC
Q 016576 189 NRVLACDLHSGQSMGY----------FDIPVDHVYGQPVILDYLASKA--ISSDD-LVVVSPDV 239 (387)
Q Consensus 189 d~VitvDlHs~~~~g~----------F~ipvd~L~a~~~la~~L~~~~--~~~~~-~vVVspd~ 239 (387)
.-++.+.+-|.|+... .|+..|||+-..-+-+|...+. +.... ..|+.-|.
T Consensus 159 ~d~~VlElSSfQL~~~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~~~Vin~dd 222 (448)
T COG0771 159 ADVYVLELSSFQLETTSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTEVAVINADD 222 (448)
T ss_pred CCEEEEEccccccccCccCCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCccEEEEeCCc
Confidence 2267778888776532 2455688887777888876542 22222 55665554
No 157
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=46.96 E-value=34 Score=27.04 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=27.0
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEE
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 315 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 315 (387)
++++++++++ +|.+...++..|++.|-.+|+.+
T Consensus 55 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~l 87 (96)
T cd01529 55 RATRYVLTCD---GSLLARFAAQELLALGGKPVALL 87 (96)
T ss_pred CCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEEEe
Confidence 5678899875 78888888999999999887655
No 158
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=46.87 E-value=36 Score=31.13 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=50.8
Q ss_pred HHHHHHhcCCCeEEEE-------eecCccccchhhccCCccchHH---------HHHHHHHHhCCCEEEEecCCc-hhcc
Q 016576 140 MIDACRRASAKNITAV-------IPYFGYARADRKTQGRESIAAK---------LVANLITEAGANRVLACDLHS-GQSM 202 (387)
Q Consensus 140 ~i~a~r~~~a~~it~v-------iPY~~YsRqDr~~~~~e~isak---------~vA~lL~~~G~d~VitvDlHs-~~~~ 202 (387)
+.+.+|+.||+.+-.+ ||=+.-.|. +..+....+|. .=++.|..+| ..||++||.- .++.
T Consensus 49 I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~--~v~~~GIy~ADVVLVPLEDGDR~EAL~~mG-K~VIaIDLNPLSRTa 125 (178)
T PF02006_consen 49 IAELLREHGAEEVLGVNPDASERIPGLDHERA--KVSKEGIYSADVVLVPLEDGDRTEALVKMG-KTVIAIDLNPLSRTA 125 (178)
T ss_pred HHHHHHHcCCCEeeccCCcccccCCCCCCccc--eECcccceeccEEEeccCCCcHHHHHHHcC-CeEEEEeCCCccccc
Confidence 4566788888877655 555554442 22222233333 2367888898 8999999975 3444
Q ss_pred cccCcc-ccccc-chHHHHHHHHh
Q 016576 203 GYFDIP-VDHVY-GQPVILDYLAS 224 (387)
Q Consensus 203 g~F~ip-vd~L~-a~~~la~~L~~ 224 (387)
..-+++ +||+. +.|.+.++..+
T Consensus 126 r~AtitIVDni~RA~p~~~~~~~~ 149 (178)
T PF02006_consen 126 RTATITIVDNITRAIPNMIEFARE 149 (178)
T ss_pred ccCceeeehhHHHHHHHHHHHHHH
Confidence 433455 47765 67877777655
No 159
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=46.17 E-value=2.9e+02 Score=26.91 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=75.1
Q ss_pred eEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEeccc----CchHHHHHHHHHHHHc
Q 016576 232 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMI----DTAGTISKGAALLHQE 307 (387)
Q Consensus 232 ~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDII----dTG~Tl~~aa~~Lk~~ 307 (387)
.++++-.. --..|+.++++|+ +.+.-.....+. |......+...|+||++.|+.-.- ++=--+.-.+-++|..
T Consensus 9 ~vl~s~ns-~~elak~vaerlg-i~~g~~~vy~~t-nret~vei~~svrgkdvfiiqt~skdvn~~vmellim~yackts 85 (354)
T KOG1503|consen 9 MVLFSGNS-HPELAKMVAERLG-IELGKATVYQKT-NRETRVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYACKTS 85 (354)
T ss_pred eEEEcCCC-CHHHHHHHHHHhc-ccccceEEEecC-CCceEEEhhhhccCceEEEEEecCcccchHHHHHHHHHHHHhhh
Confidence 34443333 3377888888886 554322211111 111112456689999999997443 3333344456678888
Q ss_pred CCcEEEEEEEcccCChhHH-------------HHHhcCCCCEEEEeCCCCCcccCCC-CCceEEehHHHHHHHHHH
Q 016576 308 GAREVYACSTHAVFSPPAI-------------ERLSSGLFQEVIITNTIPVSERNYF-PQLTILSVANLLGETIWR 369 (387)
Q Consensus 308 GA~~V~v~~tHgvfs~~A~-------------e~L~~s~i~~IvvTnTi~~~~~~~~-~kl~vlsva~lla~~I~~ 369 (387)
-|++|..+.-.--.|+.+. +.+.++++..+++.|-....-+-.+ -.+.-+--+|+|-+.|+.
T Consensus 86 ~aksiigvipy~pyskqckmrkrgsiv~klla~mmckaglthlitmdlhqkeiqgff~~pvdnlraspfllqyiqe 161 (354)
T KOG1503|consen 86 CAKSIIGVIPYLPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFSIPVDNLRASPFLLQYIQE 161 (354)
T ss_pred hhhceEEEeecCccchhhhhhhcccHHHHHHHHHHHhcccceEEeehhhhHhhcceecccccccccCHHHHHHHHH
Confidence 8999888874333444321 2234578999998886532211111 123345567777777764
No 160
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=45.92 E-value=1.1e+02 Score=23.88 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=37.9
Q ss_pred EEEEEecccCchHHHHHHHHHHHHc-CCcEEEEEEEc-cc-CCh--h---HHHHHhcCCCCEEEEeCCCCC
Q 016576 283 VAVMVDDMIDTAGTISKGAALLHQE-GAREVYACSTH-AV-FSP--P---AIERLSSGLFQEVIITNTIPV 345 (387)
Q Consensus 283 ~VIIVDDIIdTG~Tl~~aa~~Lk~~-GA~~V~v~~tH-gv-fs~--~---A~e~L~~s~i~~IvvTnTi~~ 345 (387)
.+.++||...+-..+.++.+.|++. +.+++.++..- +- .+. + .+..+....-+.+++|..-+-
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~r 83 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDNPR 83 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBTT
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCCCC
Confidence 4667777999999999999999987 55676666631 11 111 1 222333334567888765543
No 161
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=45.13 E-value=68 Score=27.91 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEee-------cCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccc
Q 016576 132 ENIMELLVMIDACRRASAKNITAVIP-------YFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGY 204 (387)
Q Consensus 132 d~lmeLll~i~a~r~~~a~~it~viP-------Y~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~ 204 (387)
...=.|-++++.|++.|++-+-+++| |.|++++.|. -.-+-+..++.+.|+ +| +|+....-..+
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~------~~y~kI~~~~~~~gf-~v--~D~s~~~y~~y 103 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQ------EYYKKIKYQLKSQGF-NV--ADFSDDEYEPY 103 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHH------HHHHHHHHHHHTTT---E--EE-TTGTTSTT
T ss_pred ccHHHHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHH------HHHHHHHHHHHHCCC-EE--EecccCCCCCc
Confidence 35667889999999999998888888 4445555443 234457788888998 55 47766655555
Q ss_pred cCccccccc
Q 016576 205 FDIPVDHVY 213 (387)
Q Consensus 205 F~ipvd~L~ 213 (387)
|=....|+-
T Consensus 104 fm~D~iHlg 112 (130)
T PF04914_consen 104 FMQDTIHLG 112 (130)
T ss_dssp SBSSSSSB-
T ss_pred eeeecccCc
Confidence 533444543
No 162
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=44.83 E-value=31 Score=26.90 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=27.9
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEE
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 315 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 315 (387)
+++.++++++ +|.+...++..|++.|-..|+.+
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~~l 87 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGFTDVRSL 87 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCCceEEEc
Confidence 5678888877 88899999999999999888744
No 163
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=43.79 E-value=1.5e+02 Score=27.35 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEe
Q 016576 77 TANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 77 ~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~vi 156 (387)
...-.||..+|.++|+++.-+.-..=.-|+-......-.+|++|+||...-..-. -++-+++++|++|+ .+..++
T Consensus 82 ~~GiplA~~vA~~l~~p~v~vRK~~k~~g~~~~~~g~~~~g~rVlIVDDVitTGg----S~~~~i~~l~~~Ga-~V~~v~ 156 (187)
T PRK13810 82 LGGVPLATAVSLETGLPLLIVRKSVKDYGTGSRFVGDLKPEDRIVMLEDVTTSGG----SVREAIEVVREAGA-YIKYVI 156 (187)
T ss_pred cchHHHHHHHHHHhCCCEEEEecCCCccCCCceEEccCCCcCEEEEEEeccCCCh----HHHHHHHHHHHCCC-EEEEEE
Confidence 3455899999999998876543321122433332233347999999976433222 25567788888887 555555
Q ss_pred ecCc
Q 016576 157 PYFG 160 (387)
Q Consensus 157 PY~~ 160 (387)
-.+-
T Consensus 157 vlvd 160 (187)
T PRK13810 157 TVVD 160 (187)
T ss_pred EEEE
Confidence 5554
No 164
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=42.76 E-value=54 Score=28.41 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCC
Q 016576 293 TAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNT 342 (387)
Q Consensus 293 TG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnT 342 (387)
+...+.+.++.|+++|...+.+++ -|.....-.+.+.+.+++.++.+.|
T Consensus 66 ~~~~~~~~~~~L~~~g~~~i~viv-GG~~~~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 66 HLTLVPALRKELDKLGRPDILVVV-GGVIPPQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEE-eCCCChHhHHHHHHCCCCEEECCCC
Confidence 556678889999999987666555 3555555567788889999998877
No 165
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=42.07 E-value=53 Score=29.28 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCCCCCeEEEecC-------CCchHHH
Q 016576 173 SIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPD-------VGGVARA 245 (387)
Q Consensus 173 ~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~~~~~vVVspd-------~Ggv~rA 245 (387)
-.+.+.=.++|+.+|+|.++.+|. +....++.+..-+-+.|.+.+ + -..+|||.| .|.+...
T Consensus 61 l~s~~ek~~~l~~~Gvd~~~~~~F---------~~~~~~ls~~~Fi~~iL~~~l-~-~~~ivvG~DfrFG~~~~G~~~~L 129 (157)
T PF06574_consen 61 LTSLEEKLELLESLGVDYVIVIPF---------TEEFANLSPEDFIEKILKEKL-N-VKHIVVGEDFRFGKNRSGDVELL 129 (157)
T ss_dssp SS-HHHHHHHHHHTTESEEEEE-C---------CCHHCCS-HHHHHHHHCCCHC-T-EEEEEEETT-EESGGGEEEHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEecc---------hHHHHcCCHHHHHHHHHHhcC-C-ccEEEEccCccCCCCCCCCHHHH
Confidence 456778889999999999999873 322334444443333444332 1 234788888 6777766
Q ss_pred HHHHHHcCCCCEEEEE
Q 016576 246 RAFAKKLSDAPLAIVD 261 (387)
Q Consensus 246 ~~lA~~L~~~~~~~v~ 261 (387)
+.+++.++ ..+.++.
T Consensus 130 ~~~~~~~g-~~v~~v~ 144 (157)
T PF06574_consen 130 KELGKEYG-FEVEVVP 144 (157)
T ss_dssp HHCTTTT--SEEEEE-
T ss_pred HHhcccCc-eEEEEEC
Confidence 66666654 5554443
No 166
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=41.31 E-value=2.4e+02 Score=24.57 Aligned_cols=106 Identities=24% Similarity=0.255 Sum_probs=66.2
Q ss_pred ChhhHHHHHHHHHHHHhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccccCccc
Q 016576 130 ANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPV 209 (387)
Q Consensus 130 ~nd~lmeLll~i~a~r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F~ipv 209 (387)
.++.-.|+|-....+++..-.++++++- + ..+=.+..+.+.+...|+|+|+.++- +...+ |+
T Consensus 13 l~~~~~e~l~~A~~La~~~g~~v~av~~--G----------~~~~~~~~l~~~l~~~G~d~v~~~~~--~~~~~-~~--- 74 (164)
T PF01012_consen 13 LNPVSLEALEAARRLAEALGGEVTAVVL--G----------PAEEAAEALRKALAKYGADKVYHIDD--PALAE-YD--- 74 (164)
T ss_dssp E-HHHHHHHHHHHHHHHCTTSEEEEEEE--E----------TCCCHHHHHHHHHHSTTESEEEEEE---GGGTT-C----
T ss_pred cCHHHHHHHHHHHHHHhhcCCeEEEEEE--e----------cchhhHHHHhhhhhhcCCcEEEEecC--ccccc-cC---
Confidence 4667778888888887765558887762 2 11233455677787799999998762 11111 11
Q ss_pred ccccchHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCEE
Q 016576 210 DHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPLA 258 (387)
Q Consensus 210 d~L~a~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~ 258 (387)
.-.-...+++.+.+. ..+.++++....|...+..+|.+|+ .++.
T Consensus 75 -~~~~a~~l~~~~~~~---~~~lVl~~~t~~g~~la~~lA~~L~-~~~v 118 (164)
T PF01012_consen 75 -PEAYADALAELIKEE---GPDLVLFGSTSFGRDLAPRLAARLG-APLV 118 (164)
T ss_dssp -HHHHHHHHHHHHHHH---T-SEEEEESSHHHHHHHHHHHHHHT--EEE
T ss_pred -HHHHHHHHHHHHHhc---CCCEEEEcCcCCCCcHHHHHHHHhC-CCcc
Confidence 011234455555553 3457888888888889999999996 7663
No 167
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=41.22 E-value=62 Score=27.03 Aligned_cols=80 Identities=9% Similarity=0.043 Sum_probs=42.9
Q ss_pred EEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCe
Q 016576 72 RIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKN 151 (387)
Q Consensus 72 ~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~ 151 (387)
.+++.-++...|......|.- ++.....-+.+.|..-.....+...|++|+=|.+.. + -|++-.++.+|+.|++.
T Consensus 3 ~i~G~G~S~~~A~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~-t---~~~~~~~~~a~~~g~~v 77 (120)
T cd05710 3 FFVGCGGSLADMYPAKYFLKK-ESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGN-T---KETVAAAKFAKEKGATV 77 (120)
T ss_pred EEEEecHHHHHHhHHHHHHHH-hcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCC-C---hHHHHHHHHHHHcCCeE
Confidence 344433343444444443332 334445566666655444445666788887776443 2 34566677788888754
Q ss_pred EEEEee
Q 016576 152 ITAVIP 157 (387)
Q Consensus 152 it~viP 157 (387)
| ++-.
T Consensus 78 i-~iT~ 82 (120)
T cd05710 78 I-GLTD 82 (120)
T ss_pred E-EEEC
Confidence 4 4443
No 168
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=41.19 E-value=31 Score=27.73 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=28.4
Q ss_pred ccCchHHHHHHHHHHHHcCCcEEEEEEEcccC-Chh----HHHHHhcCCCCEEEEe
Q 016576 290 MIDTAGTISKGAALLHQEGAREVYACSTHAVF-SPP----AIERLSSGLFQEVIIT 340 (387)
Q Consensus 290 IIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvf-s~~----A~e~L~~s~i~~IvvT 340 (387)
++.|+||- +.|+++|.....+.-..+-= ..+ ..+.|.+..|+-||.|
T Consensus 16 i~AT~gTa----~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~ 67 (95)
T PF02142_consen 16 IYATEGTA----KFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINT 67 (95)
T ss_dssp EEEEHHHH----HHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE
T ss_pred EEEChHHH----HHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEe
Confidence 56788884 67889998744443322221 123 7888888889866554
No 169
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=40.88 E-value=1.3e+02 Score=30.02 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=71.6
Q ss_pred hHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCc----hHHHHHHHHHHHHcCCcEEEEEEE
Q 016576 242 VARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT----AGTISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 242 v~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdT----G~Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
-..|+.++.+|+ +++.-+.-+|...+.. .+.+..++.|++|.|+---+.+ =-++.-.+.+++.+-|++|.++.
T Consensus 13 p~La~~I~~~lg-i~l~~v~~kkf~nge~-~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~~asa~~vTaVi- 89 (316)
T KOG1448|consen 13 PELAERIAARLG-IELGKVNLKKFSNGET-SVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACKRASASRVTAVI- 89 (316)
T ss_pred HHHHHHHHHHhC-CCcceeeeEEccCCcE-EEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcchhhhheeEEec-
Confidence 356888888886 7776555445433332 2355668999999999433322 12455567788888899998887
Q ss_pred cccCChhHHHH----------------HhcCCCCEEEEeCCCCCcccCCCCCceEEehHHHHH
Q 016576 318 HAVFSPPAIER----------------LSSGLFQEVIITNTIPVSERNYFPQLTILSVANLLG 364 (387)
Q Consensus 318 Hgvfs~~A~e~----------------L~~s~i~~IvvTnTi~~~~~~~~~kl~vlsva~lla 364 (387)
|.|...-.++ |...+.+.+++.|-.....+ -+=.+.|.++++
T Consensus 90 -P~Fpyarq~~k~~~r~~i~aklVanlls~aG~dhvItmDlHa~Q~q----gfF~ipVdnly~ 147 (316)
T KOG1448|consen 90 -PYFPYARQDKKDKSRAPILAKLVANLLSSAGADHVITMDLHASQIQ----GFFDIPVDNLYA 147 (316)
T ss_pred -cCCccccchhhhhhhhhHHHHHHHhhhhccCCceEEEecccchhhC----ceeeccchhhcc
Confidence 5665432222 23357899999887654322 122445555544
No 170
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=39.56 E-value=3.1e+02 Score=26.12 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=49.1
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEeecC-------------CCc-EEEEeC--CCcCCceEEEEecCCCCChhh
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIKRFA-------------DGE-IYVQLQ--ESVRGCHVFLVQPSCPPANEN 133 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~-------------DGE-~~v~i~--~~vrg~dV~iiqs~~~~~nd~ 133 (387)
+..+=.....-.||..+|.+||+++.-+.-.+.+ .|. ....++ .-.+|++|+||...-....
T Consensus 113 D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~-- 190 (238)
T PRK08558 113 DVVLTAATDGIPLAVAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGE-- 190 (238)
T ss_pred CEEEEECcccHHHHHHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcCEEEEEecccccCH--
Confidence 4455555677899999999999997754332211 111 112222 2257999999865433221
Q ss_pred HHHHHHHHHHHHhcCCCeE
Q 016576 134 IMELLVMIDACRRASAKNI 152 (387)
Q Consensus 134 lmeLll~i~a~r~~~a~~i 152 (387)
-+.-+++.++++||+-+
T Consensus 191 --Tl~~~~~ll~~~ga~vv 207 (238)
T PRK08558 191 --TQRALLDLARQAGADVV 207 (238)
T ss_pred --HHHHHHHHHHHcCCEEE
Confidence 26678888999998633
No 171
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.93 E-value=2.4e+02 Score=28.96 Aligned_cols=151 Identities=11% Similarity=0.167 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEeec
Q 016576 79 NPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPY 158 (387)
Q Consensus 79 ~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~viPY 158 (387)
|-..|-.+|..+|.+...-.+..|.--+-+.++-..+. .+.+|... .+.|-. -++.|++....++|++|+=
T Consensus 236 NalaA~a~a~~~G~~~~~~~L~~f~~~~~R~e~~~~~~--gv~~idDs-~~tn~~-----a~~~al~~~~~~~ii~IlG- 306 (401)
T PRK03815 236 DALLALAVYKILFDELDYERLNAFKIGKHKLEEFRDKQ--GRLWVDDS-KATNVD-----ATLQALKRYKDKKIHLILG- 306 (401)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHhCCCCCceEEEEEEEC--CEEEEECC-CCCCHH-----HHHHHHHhCCCCCEEEEEC-
Confidence 34555667777883222223677777777776653333 35566543 444432 4566666543357777776
Q ss_pred CccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhcccc---cCcccccccchHHHHHHHHhhcCCCCCeEEE
Q 016576 159 FGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGY---FDIPVDHVYGQPVILDYLASKAISSDDLVVV 235 (387)
Q Consensus 159 ~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~---F~ipvd~L~a~~~la~~L~~~~~~~~~~vVV 235 (387)
|..+ ++.. ..+++.+..... .|+.+.-+...+... .+.++........+.+++.+.. ...+.|++
T Consensus 307 -G~~k-------~~~~--~~l~~~~~~~~~-~v~~~G~~~~~~~~~~~~~~~~~~~~~~~e~av~~~~~~~-~~gdvVLl 374 (401)
T PRK03815 307 -GDDK-------GVDL--TPLFEFMKNLNI-ELYAIGSNTEKIQALAKEFNIKAFVCEFLEKAVEEIKKVL-KQNEVALL 374 (401)
T ss_pred -CCCC-------CCCH--HHHHHHHHhhCc-EEEEECCCHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHhC-CCCCEEEe
Confidence 3111 2222 256677766655 488887665433221 1212211122344445454422 34568999
Q ss_pred ecCCCchHHHHHHHH
Q 016576 236 SPDVGGVARARAFAK 250 (387)
Q Consensus 236 spd~Ggv~rA~~lA~ 250 (387)
||...+...-+++.+
T Consensus 375 SPa~aSfd~f~ny~~ 389 (401)
T PRK03815 375 SPAAASLDQFKSYKE 389 (401)
T ss_pred ChhhhccccccCHHH
Confidence 998877665555543
No 172
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=37.75 E-value=59 Score=28.73 Aligned_cols=40 Identities=28% Similarity=0.290 Sum_probs=29.9
Q ss_pred CCCCCEEEEEecccC-------chH-------HHHHHHHHHHHcCCcEEEEEEE
Q 016576 278 DVKGKVAVMVDDMID-------TAG-------TISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 278 dV~Gk~VIIVDDIId-------TG~-------Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
||+||-|++..+-.+ +|+ ++..=.+.++++||.-|.++..
T Consensus 45 DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 45 DVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred CCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 899999998866542 111 5666677888999999888874
No 173
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=37.35 E-value=1.3e+02 Score=28.46 Aligned_cols=80 Identities=20% Similarity=0.111 Sum_probs=50.1
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCC
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASA 149 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a 149 (387)
++.+|+.-++..+|+.++.+|-. +++. ..-+.|.+........+...|++|+=|.+.. + -|++-++..+|+.|+
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~-~g~~-~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~-t---~~~~~~~~~a~~~g~ 75 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFAS-TGTP-SFFLHPTEAMHGDLGMVEPNDVVLMISYSGE-S---LELLNLIPHLKRLSH 75 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHh-cCCc-eEEeCHhHHhhcccCCCCCCCEEEEEeCCCC-C---HHHHHHHHHHHHcCC
Confidence 46677766677888888887642 2322 2234555544433345666788888776543 3 346667788889898
Q ss_pred CeEEEE
Q 016576 150 KNITAV 155 (387)
Q Consensus 150 ~~it~v 155 (387)
+.|.+.
T Consensus 76 ~ii~iT 81 (268)
T TIGR00393 76 KIIAFT 81 (268)
T ss_pred cEEEEE
Confidence 766544
No 174
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=37.11 E-value=1.5e+02 Score=23.84 Aligned_cols=57 Identities=23% Similarity=0.213 Sum_probs=33.6
Q ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCCh--hHHHHHhcCC-CCEEEEeCCCC
Q 016576 279 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSP--PAIERLSSGL-FQEVIITNTIP 344 (387)
Q Consensus 279 V~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~--~A~e~L~~s~-i~~IvvTnTi~ 344 (387)
..+.+|++||| .........+.|...| ..|.. .-++ .|.+.+.... ++-+++=-..|
T Consensus 3 ~~~~~vLivdD---~~~~~~~~~~~l~~~g-~~v~~-----a~~g~~~al~~~~~~~~~dlii~D~~mp 62 (130)
T COG0784 3 LSGLRVLVVDD---EPVNRRLLKRLLEDLG-YEVVE-----AADGEEEALELLRELPQPDLILLDINMP 62 (130)
T ss_pred CCCcEEEEEcC---CHHHHHHHHHHHHHcC-CeEEE-----eCChHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 35789999999 3444455566777777 22222 2233 6888887663 66644433344
No 175
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=36.83 E-value=1.3e+02 Score=24.60 Aligned_cols=76 Identities=9% Similarity=0.044 Sum_probs=42.6
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCC
Q 016576 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAK 150 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 150 (387)
+.+++.-++...|...+..|..-. .....-++.+|...... .....|++|+=|.+.. +. |++-+++.+|+.|++
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~d~~I~iS~sG~-t~---e~~~~~~~a~~~g~~ 75 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLERLA-GIPVEVEAASEFRYRRP-LLDEDTLVIAISQSGE-TA---DTLAALRLAKEKGAK 75 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHHHhc-CCceEEEehhHhhhcCC-CCCCCcEEEEEeCCcC-CH---HHHHHHHHHHHcCCe
Confidence 455554455566777766655322 12222233445443332 3556788888776433 22 567778888888876
Q ss_pred eE
Q 016576 151 NI 152 (387)
Q Consensus 151 ~i 152 (387)
-|
T Consensus 76 vi 77 (126)
T cd05008 76 TV 77 (126)
T ss_pred EE
Confidence 44
No 176
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=36.65 E-value=52 Score=29.16 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=31.6
Q ss_pred cccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhc
Q 016576 289 DMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS 331 (387)
Q Consensus 289 DIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~ 331 (387)
|+..+..-+..|.+.|+.+|++.|+.+. ..++..++.|.+
T Consensus 100 Dl~~~~~~i~~a~~~L~~aG~~~if~vS---~~~~eGi~eL~~ 139 (143)
T PF10662_consen 100 DLPSDDANIERAKKWLKNAGVKEIFEVS---AVTGEGIEELKD 139 (143)
T ss_pred cCccchhhHHHHHHHHHHcCCCCeEEEE---CCCCcCHHHHHH
Confidence 5555678899999999999999997776 556777777753
No 177
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=36.55 E-value=63 Score=31.46 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=31.0
Q ss_pred CCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE
Q 016576 278 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 278 dV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
+++||+|+|+ -+||+-..++..|.+.|+++|+++.
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 5688999876 6799999999999999999999886
No 178
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=36.35 E-value=66 Score=28.27 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=30.0
Q ss_pred CCCCCEEEEEecccCch--------HHHHHHHHHHHHcCCcEEEEEE
Q 016576 278 DVKGKVAVMVDDMIDTA--------GTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 278 dV~Gk~VIIVDDIIdTG--------~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
||+||-||+.....+.. ++...=.+.+.++||.-|.++.
T Consensus 47 DVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 47 DVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 89999998887765421 3466667788899999888887
No 179
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=36.01 E-value=48 Score=26.25 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=28.8
Q ss_pred ccCchHHHHHHHHHHHHcCCcEEEEEEEcc-cC--ChhHHHHHhcCCCCEEEEeC
Q 016576 290 MIDTAGTISKGAALLHQEGAREVYACSTHA-VF--SPPAIERLSSGLFQEVIITN 341 (387)
Q Consensus 290 IIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg-vf--s~~A~e~L~~s~i~~IvvTn 341 (387)
++.|+|| ++.|++.|... -..|+ +. .++..+.+.+..++-||.|-
T Consensus 16 i~AT~gT----a~~L~~~Gi~~---~~~~~ki~~~~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 16 LVATGGT----AKFLREAGLPV---KTLHPKVHGGILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred EEEccHH----HHHHHHCCCcc---eeccCCCCCCCHHHHHHhcCCCeEEEEECC
Confidence 4568888 57788888642 11122 21 13477888888899888764
No 180
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=35.74 E-value=46 Score=32.47 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=44.9
Q ss_pred CcEEEEeCCCC---HHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEE--ecCCCCChhhHHHHHHHHHH
Q 016576 69 TRLRIFSGTAN---PALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLV--QPSCPPANENIMELLVMIDA 143 (387)
Q Consensus 69 ~~~~ifsg~~~---~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~ii--qs~~~~~nd~lmeLll~i~a 143 (387)
..+-|+.||+- ..|++.+-...-++.++ |-|++.+ ..+.|++|+++ |.......-+-+..-.-+.+
T Consensus 8 ~~igiIgGSGl~~~~~l~~~~~~~~~tpyg~------p~~~l~~---g~l~g~~v~~l~RhGr~H~y~~~~i~~~a~i~a 78 (267)
T PRK08564 8 ASIGIIGGSGLYDPGIFENSKEVKVYTPYGE------PSDNIII---GEIEGVEVAFLPRHGRGHRIPPHKINYRANIWA 78 (267)
T ss_pred ceEEEEecCCCCCCcccccceeeeEEcCCCC------CccCEEE---EEECCEEEEEEeCCCCCcccCCccCcchHHHHH
Confidence 46888888886 44555443333333332 3355443 23568899988 43221111112223567888
Q ss_pred HHhcCCCeEEEEe
Q 016576 144 CRRASAKNITAVI 156 (387)
Q Consensus 144 ~r~~~a~~it~vi 156 (387)
+|..|++.|.++=
T Consensus 79 Lk~LGvk~iI~tn 91 (267)
T PRK08564 79 LKELGVEWVIAVS 91 (267)
T ss_pred HHHCCCcEEEEec
Confidence 9999999887653
No 181
>PRK06242 flavodoxin; Provisional
Probab=35.54 E-value=2.8e+02 Score=23.56 Aligned_cols=96 Identities=10% Similarity=0.068 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCC--CChhhHHHHHHHHHHHHhcCCCeEEEE
Q 016576 78 ANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCP--PANENIMELLVMIDACRRASAKNITAV 155 (387)
Q Consensus 78 ~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~--~~nd~lmeLll~i~a~r~~~a~~it~v 155 (387)
+...+|+.||+.++.++..+. +. ..+++.+.|.+|+.+-.. .....+.+ +++.+....-+.+.++
T Consensus 14 nT~~~A~~ia~~l~~~~~~i~--~~--------~~~~~~~~d~ii~g~pvy~~~~~~~~~~---fl~~~~~~~~k~~~~f 80 (150)
T PRK06242 14 NTEKIAKAIAEVLDAEVIDPG--DV--------NPEDLSEYDLIGFGSGIYFGKFHKSLLK---LIEKLPPVSGKKAFIF 80 (150)
T ss_pred CHHHHHHHHHHhcCcEEecHH--HC--------CcccHhHCCEEEEeCchhcCCcCHHHHH---HHHhhhhhcCCeEEEE
Confidence 356899999999976443321 11 124566778888866211 11222333 3344433223454444
Q ss_pred eecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecC
Q 016576 156 IPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDL 196 (387)
Q Consensus 156 iPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDl 196 (387)
.-| ++ .+ +. ..+.+.++|...|+..+..+..
T Consensus 81 ~t~-g~--~~-----~~--~~~~l~~~l~~~g~~~~~~~~~ 111 (150)
T PRK06242 81 STS-GL--PF-----LK--YHKALKKKLKEKGFEIVGEFSC 111 (150)
T ss_pred ECC-CC--Cc-----ch--HHHHHHHHHHHCCCEEEEEEec
Confidence 333 22 11 11 1678888999999888776544
No 182
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=34.99 E-value=67 Score=25.53 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=26.3
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEE
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 315 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 315 (387)
+++.++++++ +|..-..++..|++.|-++|+.+
T Consensus 60 ~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v~~l 92 (101)
T cd01518 60 KGKKVLMYCT---GGIRCEKASAYLKERGFKNVYQL 92 (101)
T ss_pred CCCEEEEECC---CchhHHHHHHHHHHhCCcceeee
Confidence 5678888864 78888888999999998877654
No 183
>PRK08105 flavodoxin; Provisional
Probab=34.68 E-value=2.8e+02 Score=24.23 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=55.1
Q ss_pred CcEEEEeCCC---CHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCC--CChhhHHHHHHHHHH
Q 016576 69 TRLRIFSGTA---NPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCP--PANENIMELLVMIDA 143 (387)
Q Consensus 69 ~~~~ifsg~~---~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~--~~nd~lmeLll~i~a 143 (387)
+++.||.||. ...+|++|++.|.-.-.++.+..-+| .. .+ +.....-|+++-|+.. ...++..+++..
T Consensus 2 ~~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~--~~-~~-~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~--- 74 (149)
T PRK08105 2 AKVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPE--LS-DW-QPYQDELVLVVTSTTGQGDLPDSIVPLFQA--- 74 (149)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhh--CC-ch-hcccCCeEEEEECCCCCCCCChhHHHHHHH---
Confidence 3578888876 44888888888752222233322222 11 11 1112245777777751 112445554433
Q ss_pred HHhc----CCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEE
Q 016576 144 CRRA----SAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLA 193 (387)
Q Consensus 144 ~r~~----~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~Vit 193 (387)
+++. .-+++.++ + =-|+.. +.---.++.+.+.|...|+.+|..
T Consensus 75 l~~~~~~l~~~~~avf----G--lGds~Y-~~fc~~~~~ld~~l~~lGa~~v~~ 121 (149)
T PRK08105 75 LKDTAGYQPNLRYGVI----A--LGDSSY-DNFCGAGKQFDALLQEQGAKRVGE 121 (149)
T ss_pred HHhcCcccCCCEEEEE----e--eecCCH-HHHHHHHHHHHHHHHHCCCeEeec
Confidence 3322 11222211 1 111111 111245778889999999999874
No 184
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.32 E-value=3e+02 Score=26.27 Aligned_cols=97 Identities=14% Similarity=0.323 Sum_probs=55.9
Q ss_pred HHHHHHhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhccccc-CcccccccchHHH
Q 016576 140 MIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYF-DIPVDHVYGQPVI 218 (387)
Q Consensus 140 ~i~a~r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F-~ipvd~L~a~~~l 218 (387)
.++||+..|++||.+.-||.--- -+..+++|++-|++-+ |.-+ .|+- |...-. ..|..
T Consensus 109 vv~aL~al~a~ri~vlTPY~~ev-------------n~~e~ef~~~~Gfeiv---~~~~---Lgi~dn~eigr--~~P~~ 167 (238)
T COG3473 109 VVEALNALGAQRISVLTPYIDEV-------------NQREIEFLEANGFEIV---DFKG---LGITDNLEIGR--QEPWA 167 (238)
T ss_pred HHHHHHhhCcceEEEeccchhhh-------------hhHHHHHHHhCCeEEE---Eeec---cCCcccchhcc--cChHH
Confidence 57899999999999999996422 2357788888886433 2211 1111 111111 12332
Q ss_pred HHHHHhhc--CCCCCeEEEecCCCchHHHHHHHHHcCCCCEE
Q 016576 219 LDYLASKA--ISSDDLVVVSPDVGGVARARAFAKKLSDAPLA 258 (387)
Q Consensus 219 a~~L~~~~--~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~~ 258 (387)
+-.|.+.. .+.+-+.+-+....++.....+-+.+| +|+.
T Consensus 168 ~y~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G-~PVv 208 (238)
T COG3473 168 VYRLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTG-VPVV 208 (238)
T ss_pred HHHHHHHhcCCCCCeEEEEeeccccHHHHHHHHHHhC-Ccee
Confidence 22333322 233445555677777777777777775 7754
No 185
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=34.23 E-value=2.7e+02 Score=29.47 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHhCCceeceEEe-ecC-------CCc-----EEEEe---CCCcCCceEEEEecCCCCChhhHHHHHHHH
Q 016576 78 ANPALSQEISCYMGLDLGKIKIK-RFA-------DGE-----IYVQL---QESVRGCHVFLVQPSCPPANENIMELLVMI 141 (387)
Q Consensus 78 ~~~~La~~ia~~lg~~l~~~~~~-~F~-------DGE-----~~v~i---~~~vrg~dV~iiqs~~~~~nd~lmeLll~i 141 (387)
+....|..+|+.+|++....-++ ++. ..+ .++++ .+.+.|+.|+||...... -.- |--++
T Consensus 301 s~~~~A~g~a~~~gip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk~VlLVDDsitt--GtT--l~~~~ 376 (474)
T PRK06388 301 SGRSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIVR--GNT--MRFIV 376 (474)
T ss_pred CcHHHHHHHHHHhCCCchhheEEecccCCcccCCchhhhhhceeEEeccccccccCceEEEEeCeECc--HHH--HHHHH
Confidence 34467999999999998542221 221 222 33332 235678999998653221 122 34678
Q ss_pred HHHHhcCCCeEEEEe
Q 016576 142 DACRRASAKNITAVI 156 (387)
Q Consensus 142 ~a~r~~~a~~it~vi 156 (387)
++||++||+.|.+.+
T Consensus 377 ~~L~~aGak~V~~ri 391 (474)
T PRK06388 377 KIMRKYGAKEVHVRI 391 (474)
T ss_pred HHHHHcCCCEEEEEe
Confidence 889999999999887
No 186
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=33.66 E-value=62 Score=25.66 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=24.2
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEE
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYA 314 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v 314 (387)
+++.++++ |.+|..-..+++.|++.|-. ++.
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~-~~~ 90 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAERGYD-VDY 90 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHcCce-eEE
Confidence 45667775 77888889999999999986 443
No 187
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=33.55 E-value=52 Score=30.59 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=58.9
Q ss_pred EEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEE--eeecCCCCCEEEEEecc--cCchHHHHHHHHHHHHcCC
Q 016576 234 VVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVM--NLIGDVKGKVAVMVDDM--IDTAGTISKGAALLHQEGA 309 (387)
Q Consensus 234 VVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~--~l~gdV~Gk~VIIVDDI--IdTG~Tl~~aa~~Lk~~GA 309 (387)
+++.|..-...+..+++.+++. ..+ .|-.. .....+ .....++.....++=|+ .|.|.|....++.+.+.||
T Consensus 2 ivAlD~~~~~~a~~~~~~~~~~-v~~-iKig~--~l~~~~G~~~v~~l~~~~~~v~lD~K~~Dig~t~~~~~~~~~~~ga 77 (213)
T TIGR01740 2 IVALDVTTKDEALDLADSLGPE-IEV-IKVGI--DLLLDGGDKIIDELAKLNKLIFLDLKFADIPNTVKLQYESKIKQGA 77 (213)
T ss_pred EEECCCCCHHHHHHHHHhcCCc-CcE-EEECH--HHHHhcCHHHHHHHHHcCCCEEEEEeecchHHHHHHHHHHHHhcCC
Confidence 5777888888888888888521 122 22110 000000 11112222222566888 9999999999998888886
Q ss_pred cEEEEEEEcccCChhHHHHHh----cCCCCEEEEeCCC
Q 016576 310 REVYACSTHAVFSPPAIERLS----SGLFQEVIITNTI 343 (387)
Q Consensus 310 ~~V~v~~tHgvfs~~A~e~L~----~s~i~~IvvTnTi 343 (387)
. .++.|+.-....++.+. +.+-.-+++|.+-
T Consensus 78 d---~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~ls 112 (213)
T TIGR01740 78 D---MVNVHGVAGSESVEAAKEAASEGGRGLLAVTELT 112 (213)
T ss_pred C---EEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCC
Confidence 5 55667765555455443 2333346666554
No 188
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=33.16 E-value=1.1e+02 Score=28.38 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=26.9
Q ss_pred CCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChh
Q 016576 278 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPP 324 (387)
Q Consensus 278 dV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~ 324 (387)
+++||+|+||= .|..-..-++.|.+.|| .|.+++ +-+++.
T Consensus 6 ~l~gk~vlVvG----gG~va~rk~~~Ll~~ga-~VtVvs--p~~~~~ 45 (205)
T TIGR01470 6 NLEGRAVLVVG----GGDVALRKARLLLKAGA-QLRVIA--EELESE 45 (205)
T ss_pred EcCCCeEEEEC----cCHHHHHHHHHHHHCCC-EEEEEc--CCCCHH
Confidence 57899999872 34444556888888997 477776 344443
No 189
>PRK15482 transcriptional regulator MurR; Provisional
Probab=33.14 E-value=85 Score=30.28 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=49.9
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhc
Q 016576 68 DTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRA 147 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~ 147 (387)
.+++.+++.-++..+|+.++.+|.. +|. .+.-+.|+.........+...||+|+=|.+.. + -|++-+++.+|+.
T Consensus 135 A~~I~i~G~G~S~~~A~~l~~~l~~-~g~-~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~-t---~~~~~~~~~a~~~ 208 (285)
T PRK15482 135 APFIQITGLGGSALVGRDLSFKLMK-IGY-RVACEADTHVQATVSQALKKGDVQIAISYSGS-K---KEIVLCAEAARKQ 208 (285)
T ss_pred CCeeEEEEeChhHHHHHHHHHHHHh-CCC-eeEEeccHhHHHHHHhcCCCCCEEEEEeCCCC-C---HHHHHHHHHHHHC
Confidence 4678888877788899988888642 221 22223455432222344566799988776543 3 3455666778888
Q ss_pred CCCeEE
Q 016576 148 SAKNIT 153 (387)
Q Consensus 148 ~a~~it 153 (387)
|++-|.
T Consensus 209 g~~iI~ 214 (285)
T PRK15482 209 GATVIA 214 (285)
T ss_pred CCEEEE
Confidence 876543
No 190
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=32.16 E-value=1.5e+02 Score=32.49 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=38.3
Q ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccC----ChhHHHHHhcCCCCEE
Q 016576 279 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVF----SPPAIERLSSGLFQEV 337 (387)
Q Consensus 279 V~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvf----s~~A~e~L~~s~i~~I 337 (387)
..||+|+||- .|.|-..++..+.+.|+++|.++.-+.-. +..-++.+.+.+++-+
T Consensus 466 ~~gk~VvVIG----gG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~ 524 (654)
T PRK12769 466 TAGLNVVVLG----GGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFE 524 (654)
T ss_pred CCCCeEEEEC----CcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEE
Confidence 5789999996 68888888988889999999887754322 1222444555566643
No 191
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=31.81 E-value=76 Score=25.20 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=27.7
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
+++.++++++ +|.+...++..|+..|-+.|+.+.
T Consensus 65 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~~~ 98 (106)
T cd01519 65 KDKELIFYCK---AGVRSKAAAELARSLGYENVGNYP 98 (106)
T ss_pred CCCeEEEECC---CcHHHHHHHHHHHHcCCccceecC
Confidence 5778888854 788888899999999998887653
No 192
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=31.59 E-value=2.6e+02 Score=25.18 Aligned_cols=58 Identities=29% Similarity=0.324 Sum_probs=37.4
Q ss_pred cCCCCCEEEEEecccCchHHHHH-HHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCC
Q 016576 277 GDVKGKVAVMVDDMIDTAGTISK-GAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIP 344 (387)
Q Consensus 277 gdV~Gk~VIIVDDIIdTG~Tl~~-aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~ 344 (387)
++++||+|+||= .|.+... +++.|++.|+ +|+++.- ..++-.+.+.+ .|-||++-.-|
T Consensus 40 ~~l~gk~vlViG----~G~~~G~~~a~~L~~~g~-~V~v~~r---~~~~l~~~l~~--aDiVIsat~~~ 98 (168)
T cd01080 40 IDLAGKKVVVVG----RSNIVGKPLAALLLNRNA-TVTVCHS---KTKNLKEHTKQ--ADIVIVAVGKP 98 (168)
T ss_pred CCCCCCEEEEEC----CcHHHHHHHHHHHhhCCC-EEEEEEC---CchhHHHHHhh--CCEEEEcCCCC
Confidence 578999999874 4766566 8999999998 4655552 22344445554 35666554443
No 193
>PRK13671 hypothetical protein; Provisional
Probab=31.47 E-value=2.3e+02 Score=28.25 Aligned_cols=68 Identities=9% Similarity=0.072 Sum_probs=47.0
Q ss_pred EEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecC
Q 016576 121 FLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDL 196 (387)
Q Consensus 121 ~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDl 196 (387)
=||.+..|..|-+ +.++-.+.+..++..|.+|+..-|.-|.. -..++...=++|....|+|-|+-++.
T Consensus 4 GIIaeFNP~H~GH---l~~~~~a~~~~~~d~vi~vpSg~~~qrg~-----pa~~~~~~R~~ma~~~G~DLViELP~ 71 (298)
T PRK13671 4 GIIAEYNPFHNGH---IYQINYIKNKFPNEKIIVILSGKYTQRGE-----IAVASFEKRKKIALKYGVDKVIKLPF 71 (298)
T ss_pred eEEeeeCCccHHH---HHHHHHHHHhcCCCEEEEEECcCCCCCCC-----CCCCCHHHHHHHHHHcCCCEEEeccH
Confidence 3677776666665 34455566667888998888777754421 11237788899999999999996654
No 194
>PRK06756 flavodoxin; Provisional
Probab=31.29 E-value=2.6e+02 Score=23.93 Aligned_cols=109 Identities=14% Similarity=0.199 Sum_probs=51.9
Q ss_pred EEEEeCCC---CHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCC---CChhhHHHHHHHHHHH
Q 016576 71 LRIFSGTA---NPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCP---PANENIMELLVMIDAC 144 (387)
Q Consensus 71 ~~ifsg~~---~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~---~~nd~lmeLll~i~a~ 144 (387)
+.|+.+|. ...+|+.|++.+.-.-..+++....+-.. ..++.+.|.+++.+-.. ...+++.+++ +.+
T Consensus 4 v~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl---~~l 76 (148)
T PRK06756 4 LVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPE----ASILEQYDGIILGAYTWGDGDLPDDFLDFY---DAM 76 (148)
T ss_pred EEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCC----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHH---HHH
Confidence 44554443 34889999998843222333333322110 23455678777765221 1223444444 333
Q ss_pred HhcCC-CeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEE
Q 016576 145 RRASA-KNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVL 192 (387)
Q Consensus 145 r~~~a-~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~Vi 192 (387)
++... .+..++ | +-.+..+ +.-.-..+.+.+.|...|+..+.
T Consensus 77 ~~~~l~~k~~~~--f---gt~~~~y-~~~~~a~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 77 DSIDLTGKKAAV--F---GSCDSAY-PKYGVAVDILIEKLQERGAAVVL 119 (148)
T ss_pred hcCCCCCCEEEE--E---eCCCCch-HHHHHHHHHHHHHHHHCCCEEcC
Confidence 32221 222222 2 2222211 11123467888999999976654
No 195
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=31.22 E-value=82 Score=25.01 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=27.5
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
+++.++++++ +|.....++..|++.|-.+|+.+.
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~~l~ 90 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVYNLQ 90 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEEEec
Confidence 4678888865 688888999999999998887553
No 196
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=31.00 E-value=2e+02 Score=22.53 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=29.5
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCceeceEEe-ecCCCcEEEEeCCC
Q 016576 69 TRLRIFSGTANPALSQEISCYMGLDLGKIKIK-RFADGEIYVQLQES 114 (387)
Q Consensus 69 ~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~-~F~DGE~~v~i~~~ 114 (387)
..-.|+.++.+..-|++|++.|+... +... .-+++.+.|-+..+
T Consensus 43 ~~t~I~y~~~~~~~A~~la~~l~~~~--~~~~~~~~~~~v~vvlG~D 87 (90)
T PF13399_consen 43 ETTTIYYGPGDEAAARELAAALGGAE--IVVDPDRQDADVVVVLGKD 87 (90)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCce--EEecCCCCCCCEEEEEeCC
Confidence 55677788889999999999998543 2222 34455555555443
No 197
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=30.68 E-value=94 Score=31.50 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=32.8
Q ss_pred ecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEE
Q 016576 276 IGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 276 ~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
.|+++||+|+|| -+|.+-..+++.|.++|+.+|+++--
T Consensus 169 ~~~l~~k~vLvI----GaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 169 RQKSKKASLLFI----GYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred hCCccCCEEEEE----cccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 378899999986 57999999999999999998888763
No 198
>PRK09271 flavodoxin; Provisional
Probab=30.58 E-value=3.3e+02 Score=23.85 Aligned_cols=54 Identities=6% Similarity=0.014 Sum_probs=31.0
Q ss_pred EEEEeCCC---CHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEec
Q 016576 71 LRIFSGTA---NPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQP 125 (387)
Q Consensus 71 ~~ifsg~~---~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs 125 (387)
+.|+.+|. +..+|+.|++.|.-.-..+.+...++.++. .+..++...+++++.+
T Consensus 3 v~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~-~~~~~~~~~d~vilgt 59 (160)
T PRK09271 3 ILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLA-EYPLDPEDYDLYLLGT 59 (160)
T ss_pred EEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEeccccccc-ccccCcccCCEEEEEC
Confidence 34444443 358999999988644344555555544422 1123444568888876
No 199
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=30.51 E-value=1.2e+02 Score=28.88 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=27.9
Q ss_pred CCCCCEEEEEecccCchHHHHHH-HHHHHHcCCcEEEEEEEcccCChh
Q 016576 278 DVKGKVAVMVDDMIDTAGTISKG-AALLHQEGAREVYACSTHAVFSPP 324 (387)
Q Consensus 278 dV~Gk~VIIVDDIIdTG~Tl~~a-a~~Lk~~GA~~V~v~~tHgvfs~~ 324 (387)
+++||+|+|| .||.+..- ++.|.+.||+ |.+++ +-+++.
T Consensus 22 ~~~~~~VLVV-----GGG~VA~RK~~~Ll~~gA~-VtVVa--p~i~~e 61 (223)
T PRK05562 22 LSNKIKVLII-----GGGKAAFIKGKTFLKKGCY-VYILS--KKFSKE 61 (223)
T ss_pred ECCCCEEEEE-----CCCHHHHHHHHHHHhCCCE-EEEEc--CCCCHH
Confidence 6789999998 56665543 6777788865 77777 456655
No 200
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=29.55 E-value=90 Score=33.06 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=48.3
Q ss_pred EecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCee-EEE--eeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCc
Q 016576 235 VSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVA-EVM--NLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAR 310 (387)
Q Consensus 235 Vspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~-e~~--~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~ 310 (387)
|+...+|-.....+.....++++..+--.|+.+... +.+ .++.++... |++.|-+++||++...|...|.+.|..
T Consensus 338 v~i~r~g~~~~~alr~~~~~vri~~il~qr~~~t~~~~l~~~~lP~~is~~-V~ll~p~~~tg~~~~~a~~~ll~~gv~ 415 (473)
T KOG4203|consen 338 VSIPRSGESMETALRAACKGVRIGKILIQRDEETGEPELHYEKLPKDISDR-VLLLDPVLATGNSAMMAIILLLDHGVP 415 (473)
T ss_pred CCCCcchhHHHHHHHHHcCCceeeeeEeechhhccchhhhhhhCccccccc-eeeecchhhcchhHHHHHHHHHhCCCc
Confidence 444455555555555555456665544445543211 111 344455555 999999999999999999999999943
No 201
>PRK06031 phosphoribosyltransferase; Provisional
Probab=28.75 E-value=3.8e+02 Score=25.60 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=43.0
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCce-eceE-EeecC---------------CCcEEEEeC----CCcCCceEEEEecCCCC
Q 016576 71 LRIFSGTANPALSQEISCYMGLDL-GKIK-IKRFA---------------DGEIYVQLQ----ESVRGCHVFLVQPSCPP 129 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~l-~~~~-~~~F~---------------DGE~~v~i~----~~vrg~dV~iiqs~~~~ 129 (387)
+.+=--...-.+|..+|.+||... ..+. .+++. +..-...+. ..++|+.|+||...-..
T Consensus 87 vIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitT 166 (233)
T PRK06031 87 VVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISS 166 (233)
T ss_pred EEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccc
Confidence 333334456799999999999641 1111 12221 111122222 23689999999654332
Q ss_pred ChhhHHHHHHHHHHHHhcCCCe
Q 016576 130 ANENIMELLVMIDACRRASAKN 151 (387)
Q Consensus 130 ~nd~lmeLll~i~a~r~~~a~~ 151 (387)
- .. +.-+++.++++|++-
T Consensus 167 G-~T---l~aa~~lL~~~Ga~V 184 (233)
T PRK06031 167 G-AS---IVAGLRLLAACGIEP 184 (233)
T ss_pred c-HH---HHHHHHHHHHcCCeE
Confidence 2 12 445667788999853
No 202
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=28.67 E-value=58 Score=32.45 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHcCCc-EEEEEEEcccCChh-HHHHHhcCCCCEEEEeCCC
Q 016576 293 TAGTISKGAALLHQEGAR-EVYACSTHAVFSPP-AIERLSSGLFQEVIITNTI 343 (387)
Q Consensus 293 TG~Tl~~aa~~Lk~~GA~-~V~v~~tHgvfs~~-A~e~L~~s~i~~IvvTnTi 343 (387)
-..|+.+..+..++.|.+ +|++.=++|-+.+. ..+.|.+++|+-.+++|+-
T Consensus 128 ~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa 180 (301)
T COG1184 128 FSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSA 180 (301)
T ss_pred CcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechH
Confidence 467777777777777754 45555566666653 3455777888888888874
No 203
>PRK05568 flavodoxin; Provisional
Probab=28.42 E-value=3.6e+02 Score=22.65 Aligned_cols=102 Identities=18% Similarity=0.269 Sum_probs=52.6
Q ss_pred EeCCCC-HHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhH---HHHHHHHHHHHh-cC
Q 016576 74 FSGTAN-PALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENI---MELLVMIDACRR-AS 148 (387)
Q Consensus 74 fsg~~~-~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~l---meLll~i~a~r~-~~ 148 (387)
+|++.| ..+|+.|++.++-.-..+++....+-.. .++.+.|.+++.+-.. +... ..+.-+++.++. ..
T Consensus 9 ~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~-----~~~~~~d~iilgsp~y--~~~~~~~~~~~~f~~~~~~~~~ 81 (142)
T PRK05568 9 WSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASV-----DDVKGADVVALGSPAM--GDEVLEEGEMEPFVESISSLVK 81 (142)
T ss_pred ECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCH-----HHHHhCCEEEEECCcc--CcccccchhHHHHHHHhhhhhC
Confidence 344433 4889999997643223455555554321 2567788888876322 1111 123333444432 23
Q ss_pred CCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEE
Q 016576 149 AKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVL 192 (387)
Q Consensus 149 a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~Vi 192 (387)
.|.+.++--| +++- .-..+.+++.|+..|++.+.
T Consensus 82 ~k~~~~f~t~-G~~~---------~~~~~~~~~~l~~~g~~~~~ 115 (142)
T PRK05568 82 GKKLVLFGSY-GWGD---------GEWMRDWVERMEGYGANLVN 115 (142)
T ss_pred CCEEEEEEcc-CCCC---------ChHHHHHHHHHHHCCCEEeC
Confidence 3444444332 4421 12457788888887765554
No 204
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=27.76 E-value=1.4e+02 Score=26.75 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=37.6
Q ss_pred CCEEEEEecccCch---HHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEe
Q 016576 281 GKVAVMVDDMIDTA---GTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIIT 340 (387)
Q Consensus 281 Gk~VIIVDDIIdTG---~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvT 340 (387)
.|.+|++=|-.+++ .++.++++.++++|.. |+++.. |-.....++.|...+-..++.+
T Consensus 110 ~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~-i~~vgi-g~~~~~~L~~IA~~~~~~~~~~ 170 (186)
T cd01480 110 NKFLLVITDGHSDGSPDGGIEKAVNEADHLGIK-IFFVAV-GSQNEEPLSRIACDGKSALYRE 170 (186)
T ss_pred ceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCE-EEEEec-CccchHHHHHHHcCCcchhhhc
Confidence 45677777776543 3678889999999866 666653 4345556667766554444433
No 205
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=27.58 E-value=1.8e+02 Score=28.25 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=52.9
Q ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHH----HHHhcCCCCEEEEeCCCCCcc
Q 016576 279 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAI----ERLSSGLFQEVIITNTIPVSE 347 (387)
Q Consensus 279 V~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~----e~L~~s~i~~IvvTnTi~~~~ 347 (387)
.+|++|.++=. +.+-+.+|+..|++....-.++.+-||-|++.-. ++|..++.+-++|-..+|..|
T Consensus 106 ~~~~~vfllGg---kp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~VgmG~P~QE 175 (253)
T COG1922 106 EEGKRVFLLGG---KPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLVGMGVPRQE 175 (253)
T ss_pred ccCceEEEecC---CHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEEeCCCchhH
Confidence 34677777654 6788899999999988777777777799998544 677889999999999999865
No 206
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=27.49 E-value=46 Score=32.65 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCC
Q 016576 293 TAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIP 344 (387)
Q Consensus 293 TG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~ 344 (387)
.|+|-...++..++.+.+.+.++.+||+|.+.+...+-+. ..+|.|++=.
T Consensus 97 v~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~--~~~vltp~~~ 146 (279)
T COG0287 97 VGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFEN--AVVVLTPSEG 146 (279)
T ss_pred cccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCC--CEEEEcCCCC
Confidence 6777777888888888776689999999988532322222 4777787754
No 207
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=27.41 E-value=2.7e+02 Score=27.00 Aligned_cols=97 Identities=22% Similarity=0.332 Sum_probs=59.7
Q ss_pred CeEEEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCc
Q 016576 231 DLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAR 310 (387)
Q Consensus 231 ~~vVVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~ 310 (387)
+.+|+.-|. .|+..+|+.|++ +. .+... .+.....|.++|+.|.+.---|-..+| .-|.+.|+..|++
T Consensus 18 ~~vilpGdP---~R~~~iA~lld~-~~-~va~~------Ref~~~~g~~~g~~v~v~StGIGgPSa-aIAvEEL~~lGa~ 85 (248)
T COG2820 18 TLVILPGDP---ERVEKIAKLLDN-PV-LVASN------REFRTYTGTYNGKPVTVCSTGIGGPSA-AIAVEELARLGAK 85 (248)
T ss_pred ceEEecCCH---HHHHHHHHHhcc-ch-hhhhc------cceEEEEEEEcCeEEEEEecCCCCchH-HHHHHHHHhcCCe
Confidence 446665454 588899998863 21 11111 233356788899999998877754444 5578899999998
Q ss_pred EEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCC
Q 016576 311 EVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPV 345 (387)
Q Consensus 311 ~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~ 345 (387)
...=+-|-|-+.++ |+- + |-||.|-.+..
T Consensus 86 tfiRVGT~Galq~~----i~~-G-dvvi~tgAvr~ 114 (248)
T COG2820 86 TFIRVGTTGALQPD----INV-G-DVVVATGAVRL 114 (248)
T ss_pred EEEEeeccccccCC----CCC-C-CEEEecccccc
Confidence 76555554433322 322 2 56677766644
No 208
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=27.39 E-value=1.4e+02 Score=28.54 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=49.2
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHh
Q 016576 67 NDTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRR 146 (387)
Q Consensus 67 ~~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~ 146 (387)
..+++.+|+.-.+..+|+.++.+|.. ++... .-..|..........+.-.||+|+=|.+.. +.. +.-++.-+|+
T Consensus 127 ~a~~I~i~G~G~s~~~A~~~~~~l~~-~g~~~-~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~-~~~---~~~~~~~ak~ 200 (278)
T PRK11557 127 SARRIILTGIGASGLVAQNFAWKLMK-IGINA-VAERDMHALLATVQALSPDDLLLAISYSGE-RRE---LNLAADEALR 200 (278)
T ss_pred cCCeEEEEecChhHHHHHHHHHHHhh-CCCeE-EEcCChHHHHHHHHhCCCCCEEEEEcCCCC-CHH---HHHHHHHHHH
Confidence 34679999887888999999988753 33222 223443222211224555788888776443 343 4445677888
Q ss_pred cCCCeEEE
Q 016576 147 ASAKNITA 154 (387)
Q Consensus 147 ~~a~~it~ 154 (387)
.|++-|.+
T Consensus 201 ~ga~iI~I 208 (278)
T PRK11557 201 VGAKVLAI 208 (278)
T ss_pred cCCCEEEE
Confidence 88765543
No 209
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=27.33 E-value=1.2e+02 Score=27.60 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=42.6
Q ss_pred CchHHHHHHHHHHHHcCCcEEEEEEEcccCCh--------hHHHHHhcCCCCEEEEeCCCCCcccC--CCCCceEEehHH
Q 016576 292 DTAGTISKGAALLHQEGAREVYACSTHAVFSP--------PAIERLSSGLFQEVIITNTIPVSERN--YFPQLTILSVAN 361 (387)
Q Consensus 292 dTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~--------~A~e~L~~s~i~~IvvTnTi~~~~~~--~~~kl~vlsva~ 361 (387)
+||.|..++.+.+... -+|.+++-|.=|-+ ...+.|.+-+ ..|.|-|....--+ -..|+--++=-+
T Consensus 36 ~tG~tA~k~lemveg~--lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erG--a~v~~~sHalSg~eRsis~kfGG~~p~e 111 (186)
T COG1751 36 STGYTALKALEMVEGD--LKVVVVTHHAGFEEKGTQEMDEEVRKELKERG--AKVLTQSHALSGVERSISRKFGGYSPLE 111 (186)
T ss_pred cccHHHHHHHHhcccC--ceEEEEEeecccccCCceecCHHHHHHHHHcC--ceeeeehhhhhcchhhhhhhcCCcchHH
Confidence 4677777766666432 55666666654433 2344444433 33445554432211 134666677778
Q ss_pred HHHHHHHHHHcC
Q 016576 362 LLGETIWRVHDD 373 (387)
Q Consensus 362 lla~~I~~~~~~ 373 (387)
++||+++-.-+|
T Consensus 112 iiAetLR~fg~G 123 (186)
T COG1751 112 IIAETLRMFGQG 123 (186)
T ss_pred HHHHHHHHhcCC
Confidence 888888844433
No 210
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=27.00 E-value=1.4e+02 Score=24.33 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=48.0
Q ss_pred CcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcC
Q 016576 69 TRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRAS 148 (387)
Q Consensus 69 ~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~ 148 (387)
+++.+++.-.+..+|+..+..|.. +++ .....++.+........+...|.+|+=|.... + .+++-+++.+|+.|
T Consensus 14 ~~i~i~g~g~s~~~a~~~~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~-~---~~~~~~~~~a~~~g 87 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLLR-LGK-PVVLLSDPHLQLMSAANLTPGDVVIAISFSGE-T---KETVEAAEIAKERG 87 (139)
T ss_pred CEEEEEEcCchHHHHHHHHHHHHH-cCC-ceEEecCHHHHHHHHHcCCCCCEEEEEeCCCC-C---HHHHHHHHHHHHcC
Confidence 567888777778899988888753 333 33334555433322223344577776665432 3 34555667888888
Q ss_pred CCeEEEEee
Q 016576 149 AKNITAVIP 157 (387)
Q Consensus 149 a~~it~viP 157 (387)
++- .++-.
T Consensus 88 ~~i-v~iT~ 95 (139)
T cd05013 88 AKV-IAITD 95 (139)
T ss_pred CeE-EEEcC
Confidence 753 34443
No 211
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=26.93 E-value=5.2e+02 Score=24.05 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=35.8
Q ss_pred CceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEE
Q 016576 117 GCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRV 191 (387)
Q Consensus 117 g~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~V 191 (387)
|.++++|.|......+.+.++. +...-||.+++++++..|...|.+..
T Consensus 30 g~~vvvV~Sg~~~~t~~l~~~~---------------------------~~~s~Ge~~~~~l~~~~l~~~Gi~a~ 77 (227)
T cd04234 30 GNRVVVVVSAMGGVTDLLIELA---------------------------LLLSFGERLSARLLAAALRDRGIKAR 77 (227)
T ss_pred CCCEEEEEcCCCcccHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 6778888887666667666654 33345889999999999999997654
No 212
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=26.91 E-value=2.6e+02 Score=25.33 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=26.8
Q ss_pred CcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEE
Q 016576 114 SVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAV 155 (387)
Q Consensus 114 ~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~v 155 (387)
.+.|++|.||........ -+--+.++|+++||++|.++
T Consensus 149 ~~~~~~vllvDDV~TTGa----Tl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 149 SFQGRNIVLVDDVVTTGA----TLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCCCEEEEEeeeeccHH----HHHHHHHHHHHcCCCEEEEE
Confidence 478999999876433221 14456778889999998865
No 213
>PRK10637 cysG siroheme synthase; Provisional
Probab=26.65 E-value=1.3e+02 Score=31.37 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=29.9
Q ss_pred CCCCCEEEEEecccCchHHHHHH-HHHHHHcCCcEEEEEEEcccCChhH
Q 016576 278 DVKGKVAVMVDDMIDTAGTISKG-AALLHQEGAREVYACSTHAVFSPPA 325 (387)
Q Consensus 278 dV~Gk~VIIVDDIIdTG~Tl~~a-a~~Lk~~GA~~V~v~~tHgvfs~~A 325 (387)
+++||+|+|| .||.+..- ++.|.+.||+ |.+++ +-|+++.
T Consensus 9 ~l~~~~vlvv-----GgG~vA~rk~~~ll~~ga~-v~vis--p~~~~~~ 49 (457)
T PRK10637 9 QLRDRDCLLV-----GGGDVAERKARLLLDAGAR-LTVNA--LAFIPQF 49 (457)
T ss_pred EcCCCEEEEE-----CCCHHHHHHHHHHHHCCCE-EEEEc--CCCCHHH
Confidence 7899999998 67887554 6777788974 77776 5677653
No 214
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=26.53 E-value=4e+02 Score=25.10 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=52.1
Q ss_pred CCeEEEecCCCchHHHHHHHH-HcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecccCchHHHHHHHHHHHHcC
Q 016576 230 DDLVVVSPDVGGVARARAFAK-KLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEG 308 (387)
Q Consensus 230 ~~~vVVspd~Ggv~rA~~lA~-~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~G 308 (387)
.+.++++-| -.|++.+|+ .+.+.. .+...| +.....|..+|++|+++-=-+-.-.+-..+.+++...|
T Consensus 14 ~~~vi~~Gd---p~R~~~~a~~~~~~~~--~~~~~~------~~~~~~G~~~g~~v~v~~~GiG~~~Aai~~~eLi~~~g 82 (233)
T PRK13374 14 AETVLMPGD---PLRAKYIAETYLEDVV--QVTDVR------NMFGFTGTYKGKKVSVMGHGMGIPSMVIYVHELIATFG 82 (233)
T ss_pred CCeEEecCC---HHHHHHHHHHHhcCce--eeeccc------ceEEEEEEECCEEEEEEeCCCCHhHHHHHHHHHHHHcC
Confidence 345666444 558888885 564322 222112 11234678899999998888766555555556665689
Q ss_pred CcEEEEEEEcccCCh
Q 016576 309 AREVYACSTHAVFSP 323 (387)
Q Consensus 309 A~~V~v~~tHgvfs~ 323 (387)
++.+.-+-|=|-+.+
T Consensus 83 ~~~iI~~GtaG~l~~ 97 (233)
T PRK13374 83 VKNIIRVGSCGATQD 97 (233)
T ss_pred CcEEEEEeccccCCC
Confidence 998877776665543
No 215
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=26.41 E-value=3.2e+02 Score=24.18 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=39.9
Q ss_pred cEEEEeCCCCHHHHHHHHHHhCCcee-ceEEeec---CCCcEEEEeCCCcCCceEEEEecCCC
Q 016576 70 RLRIFSGTANPALSQEISCYMGLDLG-KIKIKRF---ADGEIYVQLQESVRGCHVFLVQPSCP 128 (387)
Q Consensus 70 ~~~ifsg~~~~~La~~ia~~lg~~l~-~~~~~~F---~DGE~~v~i~~~vrg~dV~iiqs~~~ 128 (387)
.+.+=-.++.--+|..++.+||++.. .+.+..| +-|++.+.-....+|++|+||.....
T Consensus 33 d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~ssY~~~~~~~~~~~~~~~~~gk~VLIVDDIiD 95 (156)
T PRK09177 33 KGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQGELKVLKRAEGDGEGFLVVDDLVD 95 (156)
T ss_pred CEEEEEecCCeehHHHHHHHcCCCceeEEEEEEECCCcCCcEEEecCCCcCcCEEEEEeeeeC
Confidence 45444456677899999999998853 2333344 33566665555679999999976544
No 216
>PLN02160 thiosulfate sulfurtransferase
Probab=26.29 E-value=98 Score=26.65 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=27.5
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
++++++++ |.+|.+-..+++.|++.|...|+.+.
T Consensus 80 ~~~~Iivy---C~sG~RS~~Aa~~L~~~G~~~v~~l~ 113 (136)
T PLN02160 80 PADDILVG---CQSGARSLKATTELVAAGYKKVRNKG 113 (136)
T ss_pred CCCcEEEE---CCCcHHHHHHHHHHHHcCCCCeeecC
Confidence 35667776 67999999999999999998886553
No 217
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=26.29 E-value=1.2e+02 Score=31.14 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=28.9
Q ss_pred CCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc
Q 016576 278 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA 319 (387)
Q Consensus 278 dV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 319 (387)
.++||+|.|+ ..+......++.|.+.|...+.+++.+.
T Consensus 296 ~l~gk~v~i~----~~~~~~~~l~~~L~e~G~~v~~v~~~~~ 333 (428)
T cd01965 296 YLGGKRVAIA----GDPDLLLGLSRFLLEMGAEPVAAVTGTD 333 (428)
T ss_pred HhcCCEEEEE----cChHHHHHHHHHHHHcCCcceEEEEcCC
Confidence 4689999877 2345566788999999999888777443
No 218
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=26.12 E-value=84 Score=24.67 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=24.6
Q ss_pred CCCEEEEEecccCchHH--HHHHHHHHHHcCCcEEEEE
Q 016576 280 KGKVAVMVDDMIDTAGT--ISKGAALLHQEGAREVYAC 315 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~T--l~~aa~~Lk~~GA~~V~v~ 315 (387)
+++.++++.+ +|.+ ...++..|++.|-++|+.+
T Consensus 49 ~~~~ivl~c~---~G~~~~s~~aa~~L~~~G~~~v~~l 83 (92)
T cd01532 49 RDTPIVVYGE---GGGEDLAPRAARRLSELGYTDVALL 83 (92)
T ss_pred CCCeEEEEeC---CCCchHHHHHHHHHHHcCccCEEEc
Confidence 3567888854 6643 5788899999999988744
No 219
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=25.54 E-value=1.1e+02 Score=30.84 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=38.0
Q ss_pred EEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCC
Q 016576 283 VAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIP 344 (387)
Q Consensus 283 ~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~ 344 (387)
++|||||= ...+......|.+.| .+..-|.|+. .|++.|+...+|-|+.-=-+|
T Consensus 2 ~~iiVDdd---~a~~~~l~~iLs~~~--~~~~~~~~~~---eal~~Le~~kpDLifldI~mp 55 (361)
T COG3947 2 RIIIVDDD---AAIVKLLSVILSRAG--HEVRSCSHPV---EALDLLEVFKPDLIFLDIVMP 55 (361)
T ss_pred cEEEEcch---HHHHHHHHHHHHhcc--chhhccCCHH---HHHHHHHhcCCCEEEEEeecC
Confidence 58999984 345555667888887 7777788874 678888777777776543333
No 220
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=25.30 E-value=1.2e+02 Score=23.46 Aligned_cols=31 Identities=19% Similarity=0.061 Sum_probs=23.8
Q ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEE
Q 016576 281 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 315 (387)
Q Consensus 281 Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 315 (387)
+++++++.+ +|.....++..|++.|- +|..+
T Consensus 51 ~~~vvl~c~---~g~~a~~~a~~L~~~G~-~v~~l 81 (90)
T cd01524 51 DKEIIVYCA---VGLRGYIAARILTQNGF-KVKNL 81 (90)
T ss_pred CCcEEEEcC---CChhHHHHHHHHHHCCC-CEEEe
Confidence 467788754 68888889999999998 66554
No 221
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=24.86 E-value=99 Score=24.32 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=25.4
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEE
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 315 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 315 (387)
+++.+++ ++.+|.+...++..|++.|...|+.+
T Consensus 53 ~~~~iv~---~c~~g~~s~~~~~~L~~~g~~~v~~l 85 (99)
T cd01527 53 GANAIIF---HCRSGMRTQQNAERLAAISAGEAYVL 85 (99)
T ss_pred CCCcEEE---EeCCCchHHHHHHHHHHcCCccEEEe
Confidence 3566666 47789888899999999998876544
No 222
>PF14502 HTH_41: Helix-turn-helix domain
Probab=24.80 E-value=75 Score=23.02 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHcCCcEE
Q 016576 293 TAGTISKGAALLHQEGAREV 312 (387)
Q Consensus 293 TG~Tl~~aa~~Lk~~GA~~V 312 (387)
+=||+..|.+.|++.||-.+
T Consensus 19 s~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 19 SRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred chhHHHHHHHHHHHCCcEEe
Confidence 45899999999999998654
No 223
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=24.62 E-value=1.5e+02 Score=24.50 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=30.3
Q ss_pred cCchHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhc-CCCCEEEEeCC
Q 016576 291 IDTAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSS-GLFQEVIITNT 342 (387)
Q Consensus 291 IdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~-s~i~~IvvTnT 342 (387)
+.|++|- +.|++.|.....+.-.|.--.+...+.+.+ ..++-||.|=+
T Consensus 29 ~AT~gTa----~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 29 FATGGTS----RVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred EECcHHH----HHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 4577774 457778866433333222123568888988 88998887643
No 224
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=24.58 E-value=2.1e+02 Score=27.93 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=49.5
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhc
Q 016576 68 DTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRA 147 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~ 147 (387)
.+++.+|+.-.+..+|+.++.+|.. ++..... +.|.+............|++|+=|.+.. --|++-++..+|+.
T Consensus 42 ~~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~-~~~~~~~~~~~~~~~~~d~~i~iS~sG~----t~~~~~~~~~ak~~ 115 (321)
T PRK11543 42 EGKVVVSGIGKSGHIGKKIAATLAS-TGTPAFF-VHPAEALHGDLGMIESRDVMLFISYSGG----AKELDLIIPRLEDK 115 (321)
T ss_pred CCcEEEEecChhHHHHHHHHHHHHc-CCCceee-cChHHHhhCCcCccCCCCEEEEEeCCCC----cHHHHHHHHHHHHc
Confidence 3468888877778899999988743 3332221 2232222222234556789988776543 33567777888998
Q ss_pred CCCeEEE
Q 016576 148 SAKNITA 154 (387)
Q Consensus 148 ~a~~it~ 154 (387)
|++-|.+
T Consensus 116 g~~vI~i 122 (321)
T PRK11543 116 SIALLAM 122 (321)
T ss_pred CCeEEEE
Confidence 8765543
No 225
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=24.20 E-value=62 Score=30.18 Aligned_cols=105 Identities=17% Similarity=0.053 Sum_probs=57.3
Q ss_pred EEecCCCchHHHHHHHHHcCCCCEEEEEEeecCCCeeEEEeeecCCCCCEEEEEecc--cCchHHHHHHHHHHHHcCCcE
Q 016576 234 VVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDM--IDTAGTISKGAALLHQEGARE 311 (387)
Q Consensus 234 VVspd~Ggv~rA~~lA~~L~~~~~~~v~K~R~~~~~~e~~~l~gdV~Gk~VIIVDDI--IdTG~Tl~~aa~~Lk~~GA~~ 311 (387)
+|+.|.--...+..+++.++ +...+.|--..--...-......++.....|+=|+ .|.|.|+..+++.+.+.||
T Consensus 2 ivALD~~~~~~a~~i~~~~~--~~v~~iKvg~~l~~~~g~~~i~~l~~~~~~i~~DlK~~DIg~tv~~~~~~~~~~ga-- 77 (216)
T cd04725 2 IVALDPPDEEFALALIDALG--PYVCAVKVGLELFEAAGPEIVKELRELGFLVFLDLKLGDIPNTVAAAAEALLGLGA-- 77 (216)
T ss_pred EEEeCCCCHHHHHHHHHhcC--CcccEEEECHHHHHhcCHHHHHHHHHCCCcEEEEeecCchHHHHHHHHHHHHhcCC--
Confidence 57778877888888888886 32222232110000000011112222223344443 7889999999998888775
Q ss_pred EEEEEEcccCChhHHHHHhc----CCCCEEEEeCCC
Q 016576 312 VYACSTHAVFSPPAIERLSS----GLFQEVIITNTI 343 (387)
Q Consensus 312 V~v~~tHgvfs~~A~e~L~~----s~i~~IvvTnTi 343 (387)
..++.|+.-..+.++.+.+ .+-.-+++|.+-
T Consensus 78 -d~~Tvh~~~G~~~l~~~~~~~~~~~~~~~~v~~ls 112 (216)
T cd04725 78 -DAVTVHPYGGSDMLKAALEAAEEKGKGLFAVTVLS 112 (216)
T ss_pred -CEEEECCcCCHHHHHHHHHHHhccCCeEEEEEcCC
Confidence 4666777666666665433 233345666554
No 226
>PRK05320 rhodanese superfamily protein; Provisional
Probab=24.14 E-value=1.3e+02 Score=29.18 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEE
Q 016576 279 VKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 315 (387)
Q Consensus 279 V~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 315 (387)
+++|.++++ +++|.....|+..|++.|-++|+-+
T Consensus 173 ~kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf~~V~~L 206 (257)
T PRK05320 173 LAGKTVVSF---CTGGIRCEKAAIHMQEVGIDNVYQL 206 (257)
T ss_pred cCCCeEEEE---CCCCHHHHHHHHHHHHcCCcceEEe
Confidence 478888888 8999999999999999999988743
No 227
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=24.01 E-value=1.3e+02 Score=23.90 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=25.2
Q ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEE
Q 016576 281 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 315 (387)
Q Consensus 281 Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 315 (387)
++.+++++ ++|.+...++..|+..|...|+.+
T Consensus 65 ~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~~l 96 (105)
T cd01525 65 GKIIVIVS---HSHKHAALFAAFLVKCGVPRVCIL 96 (105)
T ss_pred CCeEEEEe---CCCccHHHHHHHHHHcCCCCEEEE
Confidence 67788876 467777788889999999988754
No 228
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=23.45 E-value=4.9e+02 Score=23.91 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=45.7
Q ss_pred eCCCCHHHHHHHHHHhCCceeceEEe-ecC---------------CCcEEEEeCC-Cc-CCceEEEEecCCCCChhhHHH
Q 016576 75 SGTANPALSQEISCYMGLDLGKIKIK-RFA---------------DGEIYVQLQE-SV-RGCHVFLVQPSCPPANENIME 136 (387)
Q Consensus 75 sg~~~~~La~~ia~~lg~~l~~~~~~-~F~---------------DGE~~v~i~~-~v-rg~dV~iiqs~~~~~nd~lme 136 (387)
.....-.||..+|..||.++.-+.-. +.+ .++....+.. .+ +|+.|+||...-..-. -
T Consensus 57 ~ea~Gi~la~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l~~G~rVLIVDDvvtTGg----T 132 (191)
T TIGR01744 57 IEASGIAPAIMTGLKLGVPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFLSDQDRVLIIDDFLANGQ----A 132 (191)
T ss_pred EccccHHHHHHHHHHHCCCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhCCCcCEEEEEEehhccCh----H
Confidence 34556799999999999887655443 222 1222333332 23 7999999865432221 2
Q ss_pred HHHHHHHHHhcCCC
Q 016576 137 LLVMIDACRRASAK 150 (387)
Q Consensus 137 Lll~i~a~r~~~a~ 150 (387)
+.-+++.++++||.
T Consensus 133 ~~a~~~ll~~aGa~ 146 (191)
T TIGR01744 133 AHGLVDIAKQAGAK 146 (191)
T ss_pred HHHHHHHHHHCCCE
Confidence 56678889999985
No 229
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=23.19 E-value=1.5e+02 Score=28.58 Aligned_cols=81 Identities=12% Similarity=0.283 Sum_probs=49.3
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhc
Q 016576 68 DTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRA 147 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~ 147 (387)
.+++.+|+.-++..+|+.++.+|.- ++ ....-++|.+........+...|++|+=|.+.. +. ++.-++..+|+.
T Consensus 140 A~~I~i~G~G~S~~~A~~l~~~l~~-~g-~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~-t~---~~~~~~~~ak~~ 213 (292)
T PRK11337 140 ARQRDLYGAGGSAAIARDVQHKFLR-IG-VRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGR-TS---DVIEAVELAKKN 213 (292)
T ss_pred CCeEEEEEecHHHHHHHHHHHHHhh-CC-CeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCC-CH---HHHHHHHHHHHC
Confidence 4667788766777888888887652 22 223345665432211223455788888776543 23 355677888888
Q ss_pred CCCeEEE
Q 016576 148 SAKNITA 154 (387)
Q Consensus 148 ~a~~it~ 154 (387)
|++-|.+
T Consensus 214 g~~ii~I 220 (292)
T PRK11337 214 GAKIICI 220 (292)
T ss_pred CCeEEEE
Confidence 9855543
No 230
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=23.14 E-value=8.4e+02 Score=25.17 Aligned_cols=145 Identities=13% Similarity=0.071 Sum_probs=73.3
Q ss_pred ccchHHHHHHHHHHhCCCEEEEecCCc---hh--cccccC-cccccccchHHHHHHHHhhcCCCCCeEEEecCCC-chHH
Q 016576 172 ESIAAKLVANLITEAGANRVLACDLHS---GQ--SMGYFD-IPVDHVYGQPVILDYLASKAISSDDLVVVSPDVG-GVAR 244 (387)
Q Consensus 172 e~isak~vA~lL~~~G~d~VitvDlHs---~~--~~g~F~-ipvd~L~a~~~la~~L~~~~~~~~~~vVVspd~G-gv~r 244 (387)
.+-.+..++.++...++-.|-..--+. .+ ..-||. .|.|. .....+++.+.. ++++.+.++.-+.. |...
T Consensus 114 ~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~-~qa~ai~~ll~~--~~W~~Vaii~~~~~yG~~~ 190 (458)
T cd06375 114 YSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDF-YQAKAMAEILRF--FNWTYVSTVASEGDYGETG 190 (458)
T ss_pred CchHHHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcH-HHHHHHHHHHHH--CCCeEEEEEEeCchHHHHH
Confidence 344556678888877765553321111 11 123444 34444 345667776643 46777777765433 6666
Q ss_pred HHHHHHHcCC--CCEEEEEEeecCCCeeEEEeeecCC---CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc
Q 016576 245 ARAFAKKLSD--APLAIVDKRRQGHNVAEVMNLIGDV---KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA 319 (387)
Q Consensus 245 A~~lA~~L~~--~~~~~v~K~R~~~~~~e~~~l~gdV---~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg 319 (387)
+..+.+.+.. +.++...+-+...+..........+ .+-+|||+.- +........+.+++.|.. ...+.+.+
T Consensus 191 ~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVvl~~---~~~~~~~ll~~a~~~g~~-~~wigs~~ 266 (458)
T cd06375 191 IEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVVLFT---RSEDARELLAAAKRLNAS-FTWVASDG 266 (458)
T ss_pred HHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEEEec---ChHHHHHHHHHHHHcCCc-EEEEEecc
Confidence 6666655432 3333323222211111000111122 3567877643 345556667777888987 44445666
Q ss_pred cCCh
Q 016576 320 VFSP 323 (387)
Q Consensus 320 vfs~ 323 (387)
..+.
T Consensus 267 ~~~~ 270 (458)
T cd06375 267 WGAQ 270 (458)
T ss_pred cccc
Confidence 6543
No 231
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=23.05 E-value=4.7e+02 Score=23.99 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHhCCceeceEEe-ecCC-C--------------cEEEEeCCC--cCCceEEEEecCCCCChhhHHHHH
Q 016576 77 TANPALSQEISCYMGLDLGKIKIK-RFAD-G--------------EIYVQLQES--VRGCHVFLVQPSCPPANENIMELL 138 (387)
Q Consensus 77 ~~~~~La~~ia~~lg~~l~~~~~~-~F~D-G--------------E~~v~i~~~--vrg~dV~iiqs~~~~~nd~lmeLl 138 (387)
...-.||..+|.+||.++.-+.-. +.+. | |-...+..+ -+|+.|+||...-..-. -++
T Consensus 59 ~~GiplA~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGg----T~~ 134 (189)
T PRK09219 59 ASGIAPAVMAALALGVPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQ----AAL 134 (189)
T ss_pred cccHHHHHHHHHHHCCCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcCh----HHH
Confidence 456699999999999987544332 2221 2 222333322 27899999865432211 266
Q ss_pred HHHHHHHhcCCC
Q 016576 139 VMIDACRRASAK 150 (387)
Q Consensus 139 l~i~a~r~~~a~ 150 (387)
-+++.++++|++
T Consensus 135 a~~~lv~~aGa~ 146 (189)
T PRK09219 135 GLIDIIEQAGAK 146 (189)
T ss_pred HHHHHHHHCCCE
Confidence 778889999984
No 232
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.00 E-value=2.5e+02 Score=30.37 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=44.6
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCChh----HHHHHhcCCCCEEEEeCCCC
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSPP----AIERLSSGLFQEVIITNTIP 344 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~----A~e~L~~s~i~~IvvTnTi~ 344 (387)
+++.+||+ +.|-.+....++.|++.|. .+.+.||-++.. .++.+.+..+.-+|+||.+.
T Consensus 256 ~~~k~LVF---~nt~~~ae~l~~~L~~~g~---~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~a 318 (572)
T PRK04537 256 EGARTMVF---VNTKAFVERVARTLERHGY---RVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAA 318 (572)
T ss_pred cCCcEEEE---eCCHHHHHHHHHHHHHcCC---CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhh
Confidence 46677777 5677888888999998874 577889988875 44445666788999999864
No 233
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.75 E-value=2.1e+02 Score=23.97 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCC
Q 016576 294 AGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTI 343 (387)
Q Consensus 294 G~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi 343 (387)
-..+.+.++.|++.|...+.+++- |--.+.-.+++.+.+++.++-+.|-
T Consensus 64 ~~~~~~~~~~L~~~~~~~i~i~~G-G~~~~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 64 MTLFPEVIELLRELGAGDILVVGG-GIIPPEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEE-CCCCHHHHHHHHHCCCCEEECCCCC
Confidence 345677889999998876665552 3333444677888899999987774
No 234
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=22.66 E-value=1.4e+02 Score=24.00 Aligned_cols=33 Identities=21% Similarity=0.056 Sum_probs=25.1
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcE-EEEE
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGARE-VYAC 315 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~-V~v~ 315 (387)
+++.++++ |.+|..-..++..|++.|-.+ |+.+
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~~~v~~l 98 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLPNPVAAL 98 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCCcceeEe
Confidence 45677777 668887777899999999876 5544
No 235
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=22.42 E-value=2.7e+02 Score=27.65 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=41.9
Q ss_pred eecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcc-cCChhHHHHHh
Q 016576 275 LIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHA-VFSPPAIERLS 330 (387)
Q Consensus 275 l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHg-vfs~~A~e~L~ 330 (387)
+.|.++||+|+||-.==..........+.|+.+||.....+..-. ++.+...+++.
T Consensus 77 v~g~L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~~d~~~~~~l~ 133 (308)
T PF11382_consen 77 VAGRLTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKFLDPEQADKLR 133 (308)
T ss_pred hcCccCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhhcChhhHHHHH
Confidence 467899999999996556778899999999999999776665434 34555555554
No 236
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=22.37 E-value=1.8e+02 Score=27.64 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=46.6
Q ss_pred CcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEEE
Q 016576 114 SVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLA 193 (387)
Q Consensus 114 ~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~Vit 193 (387)
+.+|+.|+||....... --+...+.+||..++++|.+-.|-.| ...+..|+. -+|.|+.
T Consensus 121 ~~~g~~VIlVDDGiATG----atm~aAi~~~r~~~~~~IviAVPV~p----------------~~a~~~l~s-~~D~vvc 179 (220)
T COG1926 121 SLKGRTVILVDDGIATG----ATMKAAVRALRAKGPKEIVIAVPVAP----------------EDAAAELES-EADEVVC 179 (220)
T ss_pred CCCCCEEEEEeCCcchh----HHHHHHHHHHHhcCCceEEEEcccCC----------------HHHHHHHHh-hcCeEEE
Confidence 56789999997653321 12566789999999999999888655 356677765 4699998
Q ss_pred ecCCc
Q 016576 194 CDLHS 198 (387)
Q Consensus 194 vDlHs 198 (387)
+..-.
T Consensus 180 ~~~P~ 184 (220)
T COG1926 180 LYMPA 184 (220)
T ss_pred EcCCc
Confidence 77544
No 237
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=22.13 E-value=2.5e+02 Score=24.93 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=36.8
Q ss_pred CEEEEEecccCc---hHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEE-EeCCC
Q 016576 282 KVAVMVDDMIDT---AGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVI-ITNTI 343 (387)
Q Consensus 282 k~VIIVDDIIdT---G~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~Iv-vTnTi 343 (387)
|.+|++=|--++ +.....+++.+++.|. .|+++.. +-.....++.|..+ -+.++ ++++.
T Consensus 105 ~~villTDG~~~~~~~~~~~~~a~~l~~~gv-~i~~vgv-~~~~~~~L~~iA~~-~~~~f~~~~~~ 167 (185)
T cd01474 105 SVIIALTDGQLLLNGHKYPEHEAKLSRKLGA-IVYCVGV-TDFLKSQLINIADS-KEYVFPVTSGF 167 (185)
T ss_pred eEEEEEcCCCcCCCCCcchHHHHHHHHHcCC-EEEEEee-chhhHHHHHHHhCC-CCeeEecCccH
Confidence 677777777763 2345567788999886 5777765 33344455666554 36777 45443
No 238
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.08 E-value=2.5e+02 Score=23.64 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=52.4
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhc
Q 016576 68 DTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRA 147 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~ 147 (387)
.+.+.+++.-.+-..|.+.+-++--. +.+...-|.++|..--..+.+...+++|+-+... +.--++.-++..+|+.
T Consensus 13 ~~~i~~~G~G~s~~~a~e~~~kl~e~-~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g---~t~~~~~~~~~~~~~~ 88 (153)
T cd05009 13 AKSFYVLGRGPNYGTALEGALKLKET-SYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPED---RLEEKLESLIKEVKAR 88 (153)
T ss_pred cCcEEEEcCCCCHHHHHHHHHHHHHH-HhhcceeccHHHhccChhhhccCCCcEEEEecCC---hhHHHHHHHHHHHHHc
Confidence 46677776555777888877776532 5566677888887665556666666666555322 2222355567788887
Q ss_pred CCCeEEEEee
Q 016576 148 SAKNITAVIP 157 (387)
Q Consensus 148 ~a~~it~viP 157 (387)
+++-+ ++-.
T Consensus 89 ~~~vi-~it~ 97 (153)
T cd05009 89 GAKVI-VITD 97 (153)
T ss_pred CCEEE-EEec
Confidence 76444 4433
No 239
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=22.01 E-value=3.9e+02 Score=21.97 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=38.0
Q ss_pred EEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCC
Q 016576 71 LRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAK 150 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 150 (387)
+.+++.-++...|+.....+....+ ....-.+|.+. ....+..|++|+=|.+.. -.|++-.++.+|+.|++
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~~~-~~~~~~~~~~~----~~~~~~~dl~I~iS~SG~----t~e~i~~~~~a~~~g~~ 72 (119)
T cd05017 2 IVILGMGGSGIGGDLLESLLLDEAK-IPVYVVKDYTL----PAFVDRKTLVIAVSYSGN----TEETLSAVEQAKERGAK 72 (119)
T ss_pred EEEEEcCHHHHHHHHHHHHHHhccC-CCEEEecCccC----cCCCCCCCEEEEEECCCC----CHHHHHHHHHHHHCCCE
Confidence 3444433344455555544443222 22223333332 224556789888776432 23456667778888885
Q ss_pred eEE
Q 016576 151 NIT 153 (387)
Q Consensus 151 ~it 153 (387)
-|.
T Consensus 73 iI~ 75 (119)
T cd05017 73 IVA 75 (119)
T ss_pred EEE
Confidence 543
No 240
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=21.97 E-value=1.8e+02 Score=23.81 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=23.7
Q ss_pred CCEEEEEecccCchHHHHHHHHHHHHcCCcEEEE
Q 016576 281 GKVAVMVDDMIDTAGTISKGAALLHQEGAREVYA 314 (387)
Q Consensus 281 Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v 314 (387)
++.++++ |.+|.....++..|++.|-..|+.
T Consensus 58 ~~~vvly---C~~G~rS~~aa~~L~~~G~~~v~~ 88 (101)
T TIGR02981 58 NDTVKLY---CNAGRQSGMAKDILLDMGYTHAEN 88 (101)
T ss_pred CCeEEEE---eCCCHHHHHHHHHHHHcCCCeEEe
Confidence 4566666 567888888888999899888765
No 241
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.97 E-value=4.4e+02 Score=26.92 Aligned_cols=142 Identities=11% Similarity=0.119 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHhCCceeceE--EeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEe
Q 016576 79 NPALSQEISCYMGLDLGKIK--IKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVI 156 (387)
Q Consensus 79 ~~~La~~ia~~lg~~l~~~~--~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~vi 156 (387)
|-..|-.+|..||++...+. +..|..-+-+.++-..+.| -.+|..+ .+.|-. - +..|++.. .+++++|+
T Consensus 279 Na~aAia~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~g-~~vi~D~--~a~N~~--s---~~~al~~~-~~~ii~I~ 349 (447)
T PRK02472 279 NALAAIAAAKLLGVSNEAIREVLSTFSGVKHRLQYVGTIDG-RKFYNDS--KATNIL--A---TQKALSGF-NQPVVLLA 349 (447)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcceEEEEECC-eEEEECC--CCCCHH--H---HHHHHHhC-CCCEEEEE
Confidence 44677788888998887665 5666544444444322323 2344444 233322 2 34455554 35677775
Q ss_pred ecCccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhccccc---CcccccccchHHHHHHHHhhcCCCCCeE
Q 016576 157 PYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYF---DIPVDHVYGQPVILDYLASKAISSDDLV 233 (387)
Q Consensus 157 PY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F---~ipvd~L~a~~~la~~L~~~~~~~~~~v 233 (387)
- ++.|. + .-..+++.+.. ++.|+.+..+...+...+ +.++..........+.+.+.. ...+.+
T Consensus 350 g--~~~~~-~--------~~~~l~~~l~~--~~~v~~~G~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~d~V 415 (447)
T PRK02472 350 G--GLDRG-N--------EFDELVPYLKN--VKAMVVFGETAEKLARAAEKAGITVVEADNVEDAVPKAYELS-EPGDVI 415 (447)
T ss_pred C--CCCCC-C--------CHHHHHHHHhc--cCEEEEECCCHHHHHHHHHhCCCceEEcCCHHHHHHHHHHhC-CCCCEE
Confidence 4 23221 1 11345666653 789988866654332221 111111222333444443322 234577
Q ss_pred EEecCCCchH
Q 016576 234 VVSPDVGGVA 243 (387)
Q Consensus 234 VVspd~Ggv~ 243 (387)
+++|......
T Consensus 416 Lls~a~~s~d 425 (447)
T PRK02472 416 LLSPACASWD 425 (447)
T ss_pred EeCccccccc
Confidence 7877654443
No 242
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=21.94 E-value=1.7e+02 Score=28.18 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=31.0
Q ss_pred CCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEE
Q 016576 278 DVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 278 dV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
+++||+|+|+ -+|++-..++..|.+.|+.+|+++.-
T Consensus 120 ~~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILIL----GAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 5788999877 46999999999999999989998874
No 243
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=21.88 E-value=1.3e+02 Score=31.16 Aligned_cols=38 Identities=5% Similarity=0.098 Sum_probs=32.4
Q ss_pred ecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEE
Q 016576 276 IGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 276 ~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
.|++.||+|+|| -+|+.-..+++.|.+.|+..|+++.-
T Consensus 176 ~~~l~~kkvlvi----GaG~~a~~va~~L~~~g~~~I~V~nR 213 (414)
T PRK13940 176 LDNISSKNVLII----GAGQTGELLFRHVTALAPKQIMLANR 213 (414)
T ss_pred hcCccCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 367889998864 68999999999999999999988873
No 244
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=21.78 E-value=1.5e+02 Score=28.94 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=42.2
Q ss_pred CCcEEEEeCCCCHHHHH-HH-HHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEE--ecCCCCChhhHHHHHHHHHH
Q 016576 68 DTRLRIFSGTANPALSQ-EI-SCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLV--QPSCPPANENIMELLVMIDA 143 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~-~i-a~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~ii--qs~~~~~nd~lmeLll~i~a 143 (387)
..++-|+.||.--.+++ .+ -...-++.++ |-|++.+ ..+.|++|+++ |-......-+-+..-.-+.|
T Consensus 5 ~p~igII~GSGl~~l~~~~~~~~~~~tpyg~------~sg~l~~---G~l~g~~v~~l~RhGr~H~ye~~~i~~rani~a 75 (264)
T PRK07823 5 GAMLGVIGGSGFYSFFGSDAREVNVDTPYGP------PSAPITI---GEVGGRRVAFLPRHGRDHEFSPHTVPYRANMWA 75 (264)
T ss_pred CceEEEEeccccchhhcccceeeEEeccCCC------CCCCEEE---EEECCEEEEEEeCCCCCCCcCCCCccchHHHHH
Confidence 45688898988655543 11 1111222222 2244332 23568899988 53221101111445566778
Q ss_pred HHhcCCCeEEEE
Q 016576 144 CRRASAKNITAV 155 (387)
Q Consensus 144 ~r~~~a~~it~v 155 (387)
+|.+|+++|.+.
T Consensus 76 lk~lGv~~ii~t 87 (264)
T PRK07823 76 LRALGVRRVFAP 87 (264)
T ss_pred HHHcCCCEEEEe
Confidence 888999888654
No 245
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=21.51 E-value=3.4e+02 Score=24.29 Aligned_cols=63 Identities=8% Similarity=0.188 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCC--CChhhHHHHHHHHHHHHhcCCCeEEEEee
Q 016576 80 PALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCP--PANENIMELLVMIDACRRASAKNITAVIP 157 (387)
Q Consensus 80 ~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~--~~nd~lmeLll~i~a~r~~~a~~it~viP 157 (387)
..+|+.|++.|+. ..-+.+...++. +...|++++.++.. ..++++.++| ++...|+|-++.-
T Consensus 12 kkvA~aI~~~l~~-~~~~~~~~~~~~---------~~~yD~i~lG~w~d~G~~d~~~~~fl------~~l~~KkV~lF~T 75 (160)
T PF12641_consen 12 KKVAEAIAEALGA-KDIVSVEEPPED---------LEDYDLIFLGFWIDKGTPDKDMKEFL------KKLKGKKVALFGT 75 (160)
T ss_pred HHHHHHHHHHCCC-ceeEeccccccC---------CCCCCEEEEEcCccCCCCCHHHHHHH------HHccCCeEEEEEe
Confidence 4899999999998 222333333322 44578999888754 2456666653 2234477755544
Q ss_pred c
Q 016576 158 Y 158 (387)
Q Consensus 158 Y 158 (387)
+
T Consensus 76 ~ 76 (160)
T PF12641_consen 76 A 76 (160)
T ss_pred c
Confidence 3
No 246
>PRK08373 aspartate kinase; Validated
Probab=21.49 E-value=7.4e+02 Score=25.06 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=25.3
Q ss_pred chhhccCCccchHHHHHHHHHHhCCCEEEEecC
Q 016576 164 ADRKTQGRESIAAKLVANLITEAGANRVLACDL 196 (387)
Q Consensus 164 qDr~~~~~e~isak~vA~lL~~~G~d~VitvDl 196 (387)
+|.-..-||-+++++++..|...|++.. .+|.
T Consensus 102 ~D~ils~GE~lSa~lla~~L~~~Gi~a~-~l~~ 133 (341)
T PRK08373 102 RDYILSFGERLSAVLFAEALENEGIKGK-VVDP 133 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCceE-EEeH
Confidence 3555567899999999999999998776 3344
No 247
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=21.48 E-value=91 Score=24.47 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=26.1
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEE
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYAC 315 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~ 315 (387)
+++.++++++ +|.....++..|++.|...|+.+
T Consensus 60 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~l 92 (103)
T cd01447 60 EDKPFVFYCA---SGWRSALAGKTLQDMGLKPVYNI 92 (103)
T ss_pred CCCeEEEEcC---CCCcHHHHHHHHHHcChHHhEee
Confidence 4678899864 67777888999999998877644
No 248
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=21.43 E-value=5.5e+02 Score=25.13 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHhCCceeceEEe-ecCCCcE--------------EEEeC-CC-cCCceEEEEecCCCCChhhHHHHH
Q 016576 76 GTANPALSQEISCYMGLDLGKIKIK-RFADGEI--------------YVQLQ-ES-VRGCHVFLVQPSCPPANENIMELL 138 (387)
Q Consensus 76 g~~~~~La~~ia~~lg~~l~~~~~~-~F~DGE~--------------~v~i~-~~-vrg~dV~iiqs~~~~~nd~lmeLl 138 (387)
....-.||..+|.+||+++.-+.-. +...|++ ...+. .. .+|++|+||...-.... -+.
T Consensus 136 etkGIpLA~avA~~L~vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGg----Ti~ 211 (268)
T TIGR01743 136 ATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGG----TIN 211 (268)
T ss_pred ccchHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCH----HHH
Confidence 3556799999999999987544332 1112321 11111 12 37899999865432211 256
Q ss_pred HHHHHHHhcCCC
Q 016576 139 VMIDACRRASAK 150 (387)
Q Consensus 139 l~i~a~r~~~a~ 150 (387)
-+++.++++|++
T Consensus 212 a~i~Ll~e~Ga~ 223 (268)
T TIGR01743 212 GMINLLDEFDAE 223 (268)
T ss_pred HHHHHHHHCCCE
Confidence 677888888874
No 249
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=21.38 E-value=3.1e+02 Score=26.58 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHHHHHhcCCCeEEEEeecCcc--ccchhhccCCccchHH-------HHHHHHHHhCCCEEEEecCCchh
Q 016576 130 ANENIMELLVMIDACRRASAKNITAVIPYFGY--ARADRKTQGRESIAAK-------LVANLITEAGANRVLACDLHSGQ 200 (387)
Q Consensus 130 ~nd~lmeLll~i~a~r~~~a~~it~viPY~~Y--sRqDr~~~~~e~isak-------~vA~lL~~~G~d~VitvDlHs~~ 200 (387)
..|+++--.+.-.++.+.+++ ..|+|=++| +-..+.|.+--+++.. .+++-|...|+++++.++=|-++
T Consensus 39 gTD~~ia~~ia~~~~~~~~~~--a~vlP~i~yG~s~eH~~fpGTitl~~~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN 116 (250)
T COG1402 39 GTDALIAEAIAEKVAERLGAE--ALVLPTIYYGVSLEHMGFPGTITLSPETLIALLVELVESLARHGFRKFVIVNGHGGN 116 (250)
T ss_pred chhHHHHHHHHHHHHHHhCCC--eEEeCccccccchhhcCCCceEEccHHHHHHHHHHHHHHHHhcCccEEEEEecCCCc
Confidence 458888777788888888877 788885555 4444444322223332 33444556799999999999865
Q ss_pred c
Q 016576 201 S 201 (387)
Q Consensus 201 ~ 201 (387)
.
T Consensus 117 ~ 117 (250)
T COG1402 117 S 117 (250)
T ss_pred H
Confidence 4
No 250
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=21.34 E-value=5.7e+02 Score=22.49 Aligned_cols=99 Identities=13% Similarity=0.204 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEec-CC--CCChhhHHHHHHHHHHHHh--cCCCeEE
Q 016576 79 NPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQP-SC--PPANENIMELLVMIDACRR--ASAKNIT 153 (387)
Q Consensus 79 ~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs-~~--~~~nd~lmeLll~i~a~r~--~~a~~it 153 (387)
...+|+.|++.|+- ..+++....+-. ..++...|++|+.+ +. ....++..+++ +.+.. ..-+++-
T Consensus 13 Te~vA~~Ia~~l~~--~~~~i~~~~~~~-----~~~l~~~d~ii~gspty~~g~~p~~~~~fl---~~l~~~~l~gk~v~ 82 (167)
T TIGR01752 13 TEGIAEKIQKELGE--DDVDVFNIAKAS-----KEDLNAYDKLILGTPTWGVGELQEDWEDFL---PTLEELDFTGKTVA 82 (167)
T ss_pred HHHHHHHHHHHhCC--CceEEEEcccCC-----HhHHhhCCEEEEEecCCCCCcCcHHHHHHH---HHhhcCCCCCCEEE
Confidence 34889999998873 223443333321 12455677777765 22 11223333333 33332 2234443
Q ss_pred EEeecC---ccccchhhccCCccchHHHHHHHHHHhCCCEEEEec
Q 016576 154 AVIPYF---GYARADRKTQGRESIAAKLVANLITEAGANRVLACD 195 (387)
Q Consensus 154 ~viPY~---~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvD 195 (387)
++=.- +|+. ...-..+.+.++|...|+..|..+.
T Consensus 83 -~fg~g~~~~y~~-------~f~~a~~~l~~~l~~~G~~~ig~~~ 119 (167)
T TIGR01752 83 -LFGLGDQEGYSE-------TFCDGMGILYDKIKARGAKVVGFWP 119 (167)
T ss_pred -EEecCCCCcccH-------HHHHHHHHHHHHHHHcCCeEEceec
Confidence 32211 1211 1123457788899999998887654
No 251
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=21.26 E-value=3.1e+02 Score=24.15 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=41.2
Q ss_pred HHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCCCCCeEEEecCCCchHHHHHHHHHcCCCCE
Q 016576 180 ANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDVGGVARARAFAKKLSDAPL 257 (387)
Q Consensus 180 A~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~~~~~vVVspd~Ggv~rA~~lA~~L~~~~~ 257 (387)
++-+..+|+|+++.++-. .... |+ .......+++.+.+. ..+.++++-..-|-..+-.+|.+|+ .++
T Consensus 44 ~~~~~~~Gad~v~~~~~~--~~~~-~~----~~~~a~al~~~i~~~---~p~~Vl~~~t~~g~~la~rlAa~L~-~~~ 110 (168)
T cd01715 44 AAALKAYGADKVLVAEDP--ALAH-YL----AEPYAPALVALAKKE---KPSHILAGATSFGKDLAPRVAAKLD-VGL 110 (168)
T ss_pred HHHHHhcCCCEEEEecCh--hhcc-cC----hHHHHHHHHHHHHhc---CCCEEEECCCccccchHHHHHHHhC-CCc
Confidence 334457899999987631 1111 22 111234455555443 2466777777788899999999996 654
No 252
>PLN02469 hydroxyacylglutathione hydrolase
Probab=21.18 E-value=1.2e+02 Score=29.20 Aligned_cols=43 Identities=30% Similarity=0.294 Sum_probs=30.8
Q ss_pred eecCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCC
Q 016576 275 LIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFS 322 (387)
Q Consensus 275 l~gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs 322 (387)
+..+-.++.++|||-. ......+.+++.|..-.++++||+=+.
T Consensus 16 li~d~~~~~~vlIDp~-----~~~~il~~l~~~g~~l~~Il~TH~H~D 58 (258)
T PLN02469 16 LIIDESTKDAAVVDPV-----DPEKVLQAAHEHGAKIKLVLTTHHHWD 58 (258)
T ss_pred EEEeCCCCeEEEECCC-----ChHHHHHHHHHcCCcccEEEecCCCCc
Confidence 3344456789999943 345667778888988889999999644
No 253
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=20.98 E-value=2.2e+02 Score=28.35 Aligned_cols=82 Identities=9% Similarity=0.079 Sum_probs=44.5
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhc
Q 016576 68 DTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRA 147 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~ 147 (387)
-+++.+++ .++...+...++++=.++.++.+.-+++.|....-......++++|.=|.+.. +. |++-++..+|+.
T Consensus 44 ~~~I~~~g-~GsS~~aa~~~~~~~~k~~~i~v~~~~~~~~~~~~~~~~~~~~lvI~iS~SGe-T~---e~i~al~~ak~~ 118 (340)
T PRK11382 44 IDRIYFVA-CGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDYGK-TE---EVIKALELGRAC 118 (340)
T ss_pred CCEEEEEE-echHHHHHHHHHHHHHHHcCCCeEEeccHHHHhcCCcCCCCCCEEEEEcCCCC-CH---HHHHHHHHHHHc
Confidence 35566555 44444444444332222223334567787776544434555677777665433 22 466667778888
Q ss_pred CCCeEEE
Q 016576 148 SAKNITA 154 (387)
Q Consensus 148 ~a~~it~ 154 (387)
|++.|.+
T Consensus 119 Ga~~I~I 125 (340)
T PRK11382 119 GALTAAF 125 (340)
T ss_pred CCeEEEE
Confidence 8755433
No 254
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=20.89 E-value=1.5e+02 Score=27.44 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=33.8
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEe
Q 016576 67 NDTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQL 111 (387)
Q Consensus 67 ~~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i 111 (387)
.++.+.-++|-.-+++|++||+..|.+...=.-..-||.|+-+-+
T Consensus 23 ~k~Kiv~iTGG~i~pia~kIaelTG~eaVdGFkt~vPdeEi~~vV 67 (183)
T PF03612_consen 23 KKNKIVYITGGGIPPIADKIAELTGAEAVDGFKTSVPDEEIACVV 67 (183)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHCCeecCCccCCCChHHeEEEE
Confidence 356677777888889999999999998776555555666665544
No 255
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=20.72 E-value=1.8e+02 Score=26.04 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=27.4
Q ss_pred CCCCCEEEEEeccc---------Cch------HHHHHHHHHHHHcCCcEEEEEEE
Q 016576 278 DVKGKVAVMVDDMI---------DTA------GTISKGAALLHQEGAREVYACST 317 (387)
Q Consensus 278 dV~Gk~VIIVDDII---------dTG------~Tl~~aa~~Lk~~GA~~V~v~~t 317 (387)
||+||.|++..+-- ..| ++...=.+.+.++||.-|..+..
T Consensus 47 DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 47 DVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred CcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 89999998884332 112 23444567788899998887764
No 256
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=20.70 E-value=1.7e+02 Score=26.14 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=27.7
Q ss_pred CCCCCEEEEEeccc-------Cch-------HHHHHHHHHHHHcCCcEEEEEE
Q 016576 278 DVKGKVAVMVDDMI-------DTA-------GTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 278 dV~Gk~VIIVDDII-------dTG-------~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
||+||-||+....- .++ .++..=++...++||.-|.++.
T Consensus 45 DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 45 DVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred CCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 89999888876531 111 3555667777889999888886
No 257
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.59 E-value=4.1e+02 Score=27.84 Aligned_cols=148 Identities=16% Similarity=0.193 Sum_probs=74.6
Q ss_pred HHHHHHHHHhCCceeceE--EeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhcCCCeEEEEeec
Q 016576 81 ALSQEISCYMGLDLGKIK--IKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRASAKNITAVIPY 158 (387)
Q Consensus 81 ~La~~ia~~lg~~l~~~~--~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~it~viPY 158 (387)
..|-.+|..||++...+. +..|.--+-+.++-....| +.++... .+.| .- -+..|++.. .+++.+|+
T Consensus 326 laAia~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~~~g--~~~idDs-~~tn--~~---s~~~al~~~-~~~ii~Il-- 394 (498)
T PRK02006 326 LAALALARAIGLPAAPLLHGLREYRGEPHRVELVATIDG--VDYYDDS-KGTN--VG---ATVAALDGL-AQRVVLIA-- 394 (498)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEECC--EEEEEcC-CCCC--HH---HHHHHHHhC-CCCEEEEE--
Confidence 557788888999877665 5677554444444322223 4444432 2333 22 223445543 35787776
Q ss_pred CccccchhhccCCccchHHHHHHHHHHhCCCEEEEecCCchhccccc---CcccccccchHHHHHHHHhhcCCCCCeEEE
Q 016576 159 FGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYF---DIPVDHVYGQPVILDYLASKAISSDDLVVV 235 (387)
Q Consensus 159 ~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~VitvDlHs~~~~g~F---~ipvd~L~a~~~la~~L~~~~~~~~~~vVV 235 (387)
+-.+.|..+ +++ .+.+.. .++.|+.+..+...+...+ ++++..........+++.+.. ...+.+++
T Consensus 395 -Gg~~~~~~~---~~~-----~~~l~~-~~~~vi~~G~~~~~i~~~~~~~~~~~~~~~~~~eAi~~a~~~~-~~gd~VLl 463 (498)
T PRK02006 395 -GGDGKGQDF---SPL-----AAPVAR-HARAVVLIGRDAPAIRAALAGTGVPLVDAATLEEAVRAAAALA-QPGDAVLL 463 (498)
T ss_pred -cCCCCCCCH---HHH-----HHHHHH-hCCEEEEEcCCHHHHHHHHhhCCCceEecCCHHHHHHHHHHhc-CCCCEEEE
Confidence 322323221 122 333332 3588998876655443211 222211222334444444432 34568899
Q ss_pred ecCCCchHHHHHHHH
Q 016576 236 SPDVGGVARARAFAK 250 (387)
Q Consensus 236 spd~Ggv~rA~~lA~ 250 (387)
+|..++...-+.+.+
T Consensus 464 sp~~~S~d~f~~~~~ 478 (498)
T PRK02006 464 SPACASLDMFRNYAH 478 (498)
T ss_pred ChhhcccccccCHHH
Confidence 988877665444443
No 258
>PLN02962 hydroxyacylglutathione hydrolase
Probab=20.43 E-value=1.8e+02 Score=28.00 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=29.7
Q ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEEEcccCCh
Q 016576 280 KGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACSTHAVFSP 323 (387)
Q Consensus 280 ~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~ 323 (387)
.++.++|||-.-. ......+.|++.|.+-.++++||+=+.-
T Consensus 34 ~~~~avlIDP~~~---~~~~~l~~l~~~g~~i~~Il~TH~H~DH 74 (251)
T PLN02962 34 PDKPALLIDPVDK---TVDRDLSLVKELGLKLIYAMNTHVHADH 74 (251)
T ss_pred CCCEEEEECCCCC---cHHHHHHHHHHCCCeeEEEEcCCCCchh
Confidence 4678999996322 2334456788889888899999996543
No 259
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=20.38 E-value=1.7e+02 Score=22.91 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=25.5
Q ss_pred cCCCCCEEEEEecccCchHHHHHHHHHHHHcCCcEEEEEE
Q 016576 277 GDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACS 316 (387)
Q Consensus 277 gdV~Gk~VIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~v~~ 316 (387)
.+++||-||+-..-+ ++..-++..+++||.-+.++-
T Consensus 30 ~~~~gkIvlv~rg~~----~~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 30 SDVKGKIVLVERGSC----SFDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp STCTTSEEEEESTSS----CHHHHHHHHHHTTESEEEEE-
T ss_pred ccccceEEEEecCCC----CHHHHHHHHHHcCCEEEEEEe
Confidence 368998877733323 566777888899999888776
No 260
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.34 E-value=6e+02 Score=22.35 Aligned_cols=76 Identities=9% Similarity=0.145 Sum_probs=45.8
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCCCChhhHHHHHHHHHHHHhc
Q 016576 68 DTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCPPANENIMELLVMIDACRRA 147 (387)
Q Consensus 68 ~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~~~nd~lmeLll~i~a~r~~ 147 (387)
.+++.+++.-.+..+|+.++.+|.. ++. ...-..|. ....+...|++|+=|.+.. +. |++-++..+|+.
T Consensus 30 a~~I~i~G~G~S~~~A~~~~~~l~~-~g~-~~~~~~~~-----~~~~~~~~Dv~I~iS~sG~-t~---~~i~~~~~ak~~ 98 (179)
T TIGR03127 30 AKRIFVAGAGRSGLVGKAFAMRLMH-LGF-NVYVVGET-----TTPSIKKGDLLIAISGSGE-TE---SLVTVAKKAKEI 98 (179)
T ss_pred CCEEEEEecCHHHHHHHHHHHHHHh-CCC-eEEEeCCc-----ccCCCCCCCEEEEEeCCCC-cH---HHHHHHHHHHHC
Confidence 4678888766677888888888632 221 22222232 1234566789988786542 33 345556668888
Q ss_pred CCCeEEE
Q 016576 148 SAKNITA 154 (387)
Q Consensus 148 ~a~~it~ 154 (387)
|++-|.+
T Consensus 99 g~~ii~I 105 (179)
T TIGR03127 99 GATVAAI 105 (179)
T ss_pred CCeEEEE
Confidence 8765543
No 261
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=20.33 E-value=6.1e+02 Score=22.49 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=36.9
Q ss_pred HHHHHHhCCCEEEEecCCchhcccccCcccccccchHHHHHHHHhhcCCCCCeEEEecCC---CchHHHHHHHHHc
Q 016576 180 ANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSDDLVVVSPDV---GGVARARAFAKKL 252 (387)
Q Consensus 180 A~lL~~~G~d~VitvDlHs~~~~g~F~ipvd~L~a~~~la~~L~~~~~~~~~~vVVspd~---Ggv~rA~~lA~~L 252 (387)
.+.+...|+-- +.++-.......++.+..++......+++++.+.. ..++.+++.+. .+..+...+.+.+
T Consensus 72 ~~~l~~~~ip~-v~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~~~~~~~~~~ 144 (264)
T cd01537 72 VKLARKAGIPV-VLVDRDIPDGDRVPSVGSDNEQAGYLAGEHLAEKG--HRRIALLAGPLGSSTARERVAGFKDAL 144 (264)
T ss_pred HHHhhhcCCCE-EEeccCCCCCcccceEecCcHHHHHHHHHHHHHhc--CCcEEEEECCCCCCcHHHHHHHHHHHH
Confidence 44455555433 33333222212333345566667788888888763 45666665443 3445566665554
No 262
>PRK06703 flavodoxin; Provisional
Probab=20.20 E-value=5.5e+02 Score=21.91 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=51.1
Q ss_pred EEEEeCCC---CHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEec-CCC--CChhhHHHHHHHHHHH
Q 016576 71 LRIFSGTA---NPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQP-SCP--PANENIMELLVMIDAC 144 (387)
Q Consensus 71 ~~ifsg~~---~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs-~~~--~~nd~lmeLll~i~a~ 144 (387)
+.|+.+|. +..+|+.||+.++-.-..+.+....+-+ .+++.+.|.+++.+ +.. ...++...++-.+..+
T Consensus 4 v~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~-----~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~ 78 (151)
T PRK06703 4 ILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMD-----AEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENI 78 (151)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCC-----HHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcC
Confidence 44444443 4589999999885333334443332211 12345567666644 321 1122343343333222
Q ss_pred HhcCCCeEEEEeecCccccchhhccCCccchHHHHHHHHHHhCCCEEE
Q 016576 145 RRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVL 192 (387)
Q Consensus 145 r~~~a~~it~viPY~~YsRqDr~~~~~e~isak~vA~lL~~~G~d~Vi 192 (387)
+ ...+.+ +++=. |.+. . +.-.-..+.+.++|+..|+..+.
T Consensus 79 ~-l~~k~~-~vfg~--g~~~---y-~~~~~a~~~l~~~l~~~G~~~~~ 118 (151)
T PRK06703 79 D-LSGKKV-AVFGS--GDTA---Y-PLFCEAVTIFEERLVERGAELVQ 118 (151)
T ss_pred C-CCCCEE-EEEcc--CCCC---h-HHHHHHHHHHHHHHHHCCCEEcc
Confidence 1 223443 23211 1221 0 01123456788999999986553
No 263
>TIGR01564 S_layer_MJ S-layer protein, MJ0822 family. This model represents one of several families of proteins associated with the formation of prokaryotic S-layers. Members of this family are found in archaeal species, including Pyrococcus horikoshii (split into two tandem reading frames), Methanococcus jannaschii, and related species. Some local similarity can be found to other S-layer protein families.
Probab=20.18 E-value=2.1e+02 Score=31.09 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=45.3
Q ss_pred cccCCCCcEEEEeCCCCHHHHHHHHHHhCCceeceEEeecCCCcEEEEeCCCcCCceEEEEecCCC
Q 016576 63 TMIKNDTRLRIFSGTANPALSQEISCYMGLDLGKIKIKRFADGEIYVQLQESVRGCHVFLVQPSCP 128 (387)
Q Consensus 63 ~~~~~~~~~~ifsg~~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~dV~iiqs~~~ 128 (387)
+....++++.|+.|+=...|.+++...++++.. .-+.|++ ..+.....|.+|+|+.-..+
T Consensus 498 sl~~~~~nlILVGGPv~N~ltk~l~~~~~i~i~-----n~~p~~~-~~~~~~~ng~~vlvvAG~dr 557 (571)
T TIGR01564 498 SLDNADKNLILVGGPVANKLTKELADAGKVPKT-----ESSPATY-AEKCGAANGYDVLVVAGGDR 557 (571)
T ss_pred ccccCCCCEEEECCcchhHHHHHHHhcCceecc-----CCCccee-eeeccccCCceEEEEeCCCh
Confidence 444557889999999988999999998776544 5666664 55666778999999976533
No 264
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=20.14 E-value=2.7e+02 Score=20.60 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=26.3
Q ss_pred EEEEeCCCCHHHHHHHHHHh--CCceeceEEeecCC
Q 016576 71 LRIFSGTANPALSQEISCYM--GLDLGKIKIKRFAD 104 (387)
Q Consensus 71 ~~ifsg~~~~~La~~ia~~l--g~~l~~~~~~~F~D 104 (387)
-++++|.+...|++++.+.| |-++..--.-.|..
T Consensus 6 Yr~lt~~d~~~fc~rVt~aL~~GW~l~GsP~~t~~~ 41 (54)
T PF08410_consen 6 YRVLTGPDDSAFCHRVTEALNEGWQLYGSPTYTFDG 41 (54)
T ss_pred eEEEECCChHHHHHHHHHHHHcCCEecCCceEEECC
Confidence 68899999999999999997 55555555555554
No 265
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=20.13 E-value=6.8e+02 Score=22.92 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=22.1
Q ss_pred ccccccchHHHHHHHHhhcCCCCCeEEEecCCC---chHHHHHHHHHc
Q 016576 208 PVDHVYGQPVILDYLASKAISSDDLVVVSPDVG---GVARARAFAKKL 252 (387)
Q Consensus 208 pvd~L~a~~~la~~L~~~~~~~~~~vVVspd~G---gv~rA~~lA~~L 252 (387)
-.|+..+...++++|.++. ..++.+++.+.+ +..|...+.+.+
T Consensus 106 ~~d~~~~g~~~a~~l~~~g--~~~i~~i~~~~~~~~~~~r~~gf~~~~ 151 (275)
T cd06295 106 GSDNVGGGRLATEHLLARG--RRRIAFLGGPQDMPEGEERLEGYREAL 151 (275)
T ss_pred EECcHHHHHHHHHHHHHCC--CCeEEEEcCCCCcchhHHHHHHHHHHH
Confidence 3455556666777776652 445555543322 334555555444
No 266
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=20.09 E-value=1.9e+02 Score=27.52 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=43.5
Q ss_pred eecCCCCCEEEEEeccc----C-chHHHHHHHHHHHHcCCcEEEEEEEcccCChhHHHHHhcCCCCEEEEeCCCCCc
Q 016576 275 LIGDVKGKVAVMVDDMI----D-TAGTISKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQEVIITNTIPVS 346 (387)
Q Consensus 275 l~gdV~Gk~VIIVDDII----d-TG~Tl~~aa~~Lk~~GA~~V~v~~tHgvfs~~A~e~L~~s~i~~IvvTnTi~~~ 346 (387)
..|.++|+.|+++---+ - .-..+....+.|++.|++.|..+-+=|-+.++ ++ .=|-|+.++.+.++
T Consensus 44 ~~G~~~g~~Vv~~~~gih~~~Gk~~~a~~~~~~~l~~~Gv~~II~~GsaGsl~~~----l~--~GDiVI~~~~i~~~ 114 (248)
T TIGR01697 44 VFGRLGGKPVVCMQGRFHYYEGYDMATVTFPVRVMKLLGVEILVVTNAAGGLNPD----FK--PGDLMIIKDHINLP 114 (248)
T ss_pred EEEEECCEEEEEEcCCCcccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCCCC----CC--CCCEEEEhhhhhcC
Confidence 35778999999887222 0 11235555779999999999999877766543 32 23567777766543
Done!