Query 016577
Match_columns 387
No_of_seqs 212 out of 1122
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 1.6E-13 3.4E-18 102.7 6.4 54 333-386 4-60 (60)
2 PF00010 HLH: Helix-loop-helix 99.4 2.8E-13 6E-18 101.2 5.1 49 334-382 2-55 (55)
3 smart00353 HLH helix loop heli 99.4 1.5E-12 3.2E-17 95.8 6.7 49 338-386 1-52 (53)
4 KOG1318 Helix loop helix trans 99.2 6E-12 1.3E-16 128.3 4.7 59 328-386 228-290 (411)
5 KOG4304 Transcriptional repres 98.9 7.2E-10 1.6E-14 107.2 4.2 52 334-385 33-92 (250)
6 KOG1319 bHLHZip transcription 98.7 1.1E-08 2.4E-13 95.3 4.2 52 334-385 63-121 (229)
7 KOG3561 Aryl-hydrocarbon recep 98.6 5.8E-08 1.3E-12 106.3 5.4 51 334-384 21-75 (803)
8 KOG2588 Predicted DNA-binding 98.0 2.8E-06 6.2E-11 94.0 3.7 55 332-386 275-330 (953)
9 KOG2483 Upstream transcription 98.0 6.7E-06 1.5E-10 79.1 5.5 52 334-385 60-114 (232)
10 KOG3960 Myogenic helix-loop-he 97.9 2.2E-05 4.9E-10 76.2 6.3 50 337-386 122-173 (284)
11 KOG0561 bHLH transcription fac 97.8 2.1E-05 4.5E-10 78.2 4.3 52 333-384 60-113 (373)
12 KOG4029 Transcription factor H 97.6 6.7E-05 1.5E-09 71.2 4.1 51 336-386 112-166 (228)
13 PLN03217 transcription factor 97.0 0.0012 2.6E-08 55.0 5.3 41 346-386 20-66 (93)
14 KOG3910 Helix loop helix trans 96.5 0.0045 9.7E-08 65.4 5.9 52 335-386 528-583 (632)
15 KOG4447 Transcription factor T 95.0 0.011 2.5E-07 54.1 1.5 49 335-383 80-130 (173)
16 KOG3898 Transcription factor N 92.4 0.31 6.8E-06 47.7 6.4 48 336-383 75-125 (254)
17 KOG3560 Aryl-hydrocarbon recep 91.7 0.17 3.7E-06 54.5 3.8 39 342-380 34-76 (712)
18 KOG4395 Transcription factor A 90.6 1.3 2.9E-05 43.8 8.5 50 336-385 177-229 (285)
19 KOG3558 Hypoxia-inducible fact 89.3 0.28 6E-06 54.1 2.9 42 339-380 52-97 (768)
20 KOG4447 Transcription factor T 37.8 16 0.00035 34.0 1.1 43 340-382 29-73 (173)
21 KOG3582 Mlx interactors and re 34.1 12 0.00026 41.9 -0.3 51 334-384 652-707 (856)
22 PF07908 D-aminoacyl_C: D-amin 21.3 36 0.00077 25.2 0.3 16 28-43 18-33 (48)
23 PF14800 DUF4481: Domain of un 21.0 44 0.00096 34.1 1.0 9 34-42 1-9 (308)
24 TIGR00986 3a0801s05tom22 mitoc 20.7 68 0.0015 29.5 2.0 36 346-381 49-84 (145)
25 COG1244 Predicted Fe-S oxidore 20.7 40 0.00086 35.0 0.5 12 27-38 250-261 (358)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.45 E-value=1.6e-13 Score=102.70 Aligned_cols=54 Identities=50% Similarity=0.773 Sum_probs=50.5
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 333 AAEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 333 ~~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~---~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
.+..|+..||+||++||+.|.+|+.+||.+ .|++|++||..||+||+.|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 445899999999999999999999999988 689999999999999999999875
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.41 E-value=2.8e-13 Score=101.17 Aligned_cols=49 Identities=55% Similarity=0.889 Sum_probs=46.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHHHHHHHHH
Q 016577 334 AEVHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 382 (387)
Q Consensus 334 ~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~-----~K~dKasIL~~AIeYIk~Lq 382 (387)
+..|+..||+||++||+.|.+|+++||.+ .|++|++||+.||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 35799999999999999999999999987 48999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.36 E-value=1.5e-12 Score=95.81 Aligned_cols=49 Identities=53% Similarity=0.736 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 338 NLSERRRRDRINEKMRALQELIPH---CNKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 338 n~~ERrRR~rINe~~~~Lr~LIP~---~~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
|..||+||++||+.|..|+.+||. ..|++|++||.+||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999995 5589999999999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.23 E-value=6e-12 Score=128.31 Aligned_cols=59 Identities=42% Similarity=0.782 Sum_probs=53.0
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHHhc
Q 016577 328 CRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 328 ~kr~~~~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~~----K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
.|-+++++.||++|||||++||++|++|..|||.|+ |..|..||..+++||+.||+..+
T Consensus 228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 344567789999999999999999999999999995 67799999999999999998754
No 5
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.92 E-value=7.2e-10 Score=107.21 Aligned_cols=52 Identities=35% Similarity=0.533 Sum_probs=46.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCC--------CCCCHHHHHHHHHHHHHHHHHHh
Q 016577 334 AEVHNLSERRRRDRINEKMRALQELIPHC--------NKTDKASMLDEAIEYLKSLQLQL 385 (387)
Q Consensus 334 ~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~--------~K~dKasIL~~AIeYIk~Lq~qv 385 (387)
+..|-++|||||+|||+.|.+|++||+.+ .|++||.||+.||+|||.|+...
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 44788999999999999999999999933 57889999999999999999754
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.71 E-value=1.1e-08 Score=95.28 Aligned_cols=52 Identities=35% Similarity=0.627 Sum_probs=47.5
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCCC-------CCCHHHHHHHHHHHHHHHHHHh
Q 016577 334 AEVHNLSERRRRDRINEKMRALQELIPHCN-------KTDKASMLDEAIEYLKSLQLQL 385 (387)
Q Consensus 334 ~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~~-------K~dKasIL~~AIeYIk~Lq~qv 385 (387)
+..|...||+||+-||.....|++|||.|. |+.||.||.++|+||.+|..+.
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k 121 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEK 121 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999763 7889999999999999998764
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.56 E-value=5.8e-08 Score=106.33 Aligned_cols=51 Identities=33% Similarity=0.531 Sum_probs=47.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHH
Q 016577 334 AEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQ 384 (387)
Q Consensus 334 ~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~~----K~dKasIL~~AIeYIk~Lq~q 384 (387)
+++|+.+||||||++|..|.||.+|||.|. |+||.+||.+||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 468999999999999999999999999886 999999999999999999874
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.04 E-value=2.8e-06 Score=93.96 Aligned_cols=55 Identities=36% Similarity=0.593 Sum_probs=49.7
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHHHHHHHHHHHHhc
Q 016577 332 RAAEVHNLSERRRRDRINEKMRALQELIPHCN-KTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 332 ~~~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~~-K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
-++.+||++|||.|..||++|.+|+.+||+.. |+.|..+|..||+||+.|+...+
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq 330 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQ 330 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhcccc
Confidence 34569999999999999999999999999874 99999999999999999987543
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.02 E-value=6.7e-06 Score=79.15 Aligned_cols=52 Identities=31% Similarity=0.503 Sum_probs=45.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCCC--CCC-HHHHHHHHHHHHHHHHHHh
Q 016577 334 AEVHNLSERRRRDRINEKMRALQELIPHCN--KTD-KASMLDEAIEYLKSLQLQL 385 (387)
Q Consensus 334 ~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~~--K~d-KasIL~~AIeYIk~Lq~qv 385 (387)
+..||..||+||+.|.++|..|+.+||... +.. .++||++|++||+.|+.+.
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~ 114 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKS 114 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHH
Confidence 358999999999999999999999999664 333 7999999999999999764
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.89 E-value=2.2e-05 Score=76.22 Aligned_cols=50 Identities=34% Similarity=0.517 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhc-CCCCC-CCCHHHHHHHHHHHHHHHHHHhc
Q 016577 337 HNLSERRRRDRINEKMRALQEL-IPHCN-KTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 337 Hn~~ERrRR~rINe~~~~Lr~L-IP~~~-K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
-.+.||||=.|+||.|.+|++- .++-+ ++-|+.||..||+||..||.-++
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~ 173 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQ 173 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999865 55554 79999999999999999998654
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.78 E-value=2.1e-05 Score=78.15 Aligned_cols=52 Identities=33% Similarity=0.565 Sum_probs=47.0
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHHHHHHHH
Q 016577 333 AAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQ 384 (387)
Q Consensus 333 ~~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~--~K~dKasIL~~AIeYIk~Lq~q 384 (387)
+++.-|..||||-.-||..|..||.|||.- .|++||.||+.+.+||.+|+.+
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~ 113 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGH 113 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 345778999999999999999999999965 5999999999999999999864
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.57 E-value=6.7e-05 Score=71.23 Aligned_cols=51 Identities=29% Similarity=0.447 Sum_probs=46.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 336 VHNLSERRRRDRINEKMRALQELIPH----CNKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 336 ~Hn~~ERrRR~rINe~~~~Lr~LIP~----~~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
.+|..||.|=..+|..|.+||.+||. ..|+.|..+|..||+||++|+.-++
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~ 166 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLA 166 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhc
Confidence 56788999999999999999999993 5689999999999999999998764
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.04 E-value=0.0012 Score=55.05 Aligned_cols=41 Identities=29% Similarity=0.622 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCC------CCCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 346 DRINEKMRALQELIPH------CNKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 346 ~rINe~~~~Lr~LIP~------~~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
+.||+.+..|+.|+|. ..|..-+-+|++++.||+.|+++|.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvD 66 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVD 66 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999993 3467788899999999999999884
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.48 E-value=0.0045 Score=65.40 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=44.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCCCCCC----CCHHHHHHHHHHHHHHHHHHhc
Q 016577 335 EVHNLSERRRRDRINEKMRALQELIPHCNK----TDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 335 ~~Hn~~ERrRR~rINe~~~~Lr~LIP~~~K----~dKasIL~~AIeYIk~Lq~qvq 386 (387)
...|..||.|=..|||.|+||.++.=-..| .-|.-||..||.-|-.|++||.
T Consensus 528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVR 583 (632)
T KOG3910|consen 528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVR 583 (632)
T ss_pred hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998663333 4499999999999999999984
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.99 E-value=0.011 Score=54.06 Aligned_cols=49 Identities=33% Similarity=0.490 Sum_probs=44.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHHHHHHH
Q 016577 335 EVHNLSERRRRDRINEKMRALQELIP--HCNKTDKASMLDEAIEYLKSLQL 383 (387)
Q Consensus 335 ~~Hn~~ERrRR~rINe~~~~Lr~LIP--~~~K~dKasIL~~AIeYIk~Lq~ 383 (387)
-.||+.||+|-..+|+.|..||.+|| +..|++|..-|+-|..||-+|=.
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 37999999999999999999999999 45799999999999999988754
No 16
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=92.41 E-value=0.31 Score=47.68 Aligned_cols=48 Identities=35% Similarity=0.486 Sum_probs=42.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHHHHHHHHHH
Q 016577 336 VHNLSERRRRDRINEKMRALQELIPH---CNKTDKASMLDEAIEYLKSLQL 383 (387)
Q Consensus 336 ~Hn~~ERrRR~rINe~~~~Lr~LIP~---~~K~dKasIL~~AIeYIk~Lq~ 383 (387)
.=|..||+|--.+|+.|+.||++||. ..|+.|...|.-|-.||..|+.
T Consensus 75 kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 75 KANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred cccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 34778999999999999999999994 3589999999999999999875
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=91.68 E-value=0.17 Score=54.52 Aligned_cols=39 Identities=38% Similarity=0.675 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHH
Q 016577 342 RRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKS 380 (387)
Q Consensus 342 RrRR~rINe~~~~Lr~LIP~~----~K~dKasIL~~AIeYIk~ 380 (387)
||-|||+|.-++.|..|+|-- +|+||.+||.-+|.||+-
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 688999999999999999943 699999999999999863
No 18
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=90.59 E-value=1.3 Score=43.76 Aligned_cols=50 Identities=30% Similarity=0.398 Sum_probs=44.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHHHHHHHHh
Q 016577 336 VHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQL 385 (387)
Q Consensus 336 ~Hn~~ERrRR~rINe~~~~Lr~LIP~~---~K~dKasIL~~AIeYIk~Lq~qv 385 (387)
+-|..||+|-..+|..|+.|+..||.. .|++|-.-|.+|-.||--|-..+
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 568899999999999999999999965 37899999999999998876543
No 19
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.26 E-value=0.28 Score=54.11 Aligned_cols=42 Identities=36% Similarity=0.528 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHH
Q 016577 339 LSERRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKS 380 (387)
Q Consensus 339 ~~ERrRR~rINe~~~~Lr~LIP~~----~K~dKasIL~~AIeYIk~ 380 (387)
-+.|.||-|=|+-|.+|..+||-- .-+|||+|+.-||-|+|.
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 456999999999999999999922 469999999999999984
No 20
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=37.77 E-value=16 Score=34.01 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHHHHHH
Q 016577 340 SERRRRDRINEKMRALQELIPHCN--KTDKASMLDEAIEYLKSLQ 382 (387)
Q Consensus 340 ~ERrRR~rINe~~~~Lr~LIP~~~--K~dKasIL~~AIeYIk~Lq 382 (387)
.|+.|..++|+.+.-|+.|+|++. ++.+.--|..+-.||.+|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 478889999999999999999763 3332222555555555443
No 21
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=34.11 E-value=12 Score=41.92 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=43.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCCC-----CCCHHHHHHHHHHHHHHHHHH
Q 016577 334 AEVHNLSERRRRDRINEKMRALQELIPHCN-----KTDKASMLDEAIEYLKSLQLQ 384 (387)
Q Consensus 334 ~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~~-----K~dKasIL~~AIeYIk~Lq~q 384 (387)
...|.-+|.+||.+|.-.|..|-.++-+.. |+.+..-|...++||..++.+
T Consensus 652 ~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e 707 (856)
T KOG3582|consen 652 PITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQE 707 (856)
T ss_pred cccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchh
Confidence 347999999999999999999999998664 566777799999999887754
No 22
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=21.32 E-value=36 Score=25.16 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=13.6
Q ss_pred hhhhhhhcCCeEEEee
Q 016577 28 ELVELLWQNGHVVLSS 43 (387)
Q Consensus 28 eLvELLW~NGqVVmQS 43 (387)
+=|+.+|-||++|...
T Consensus 18 ~GI~~V~VNG~~vv~~ 33 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVED 33 (48)
T ss_dssp BSEEEEEETTEEEECT
T ss_pred CCEEEEEECCEEEEEC
Confidence 3378999999999976
No 23
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=21.02 E-value=44 Score=34.05 Aligned_cols=9 Identities=44% Similarity=1.280 Sum_probs=8.2
Q ss_pred hcCCeEEEe
Q 016577 34 WQNGHVVLS 42 (387)
Q Consensus 34 W~NGqVVmQ 42 (387)
|+||||||-
T Consensus 1 ~~NGqvi~~ 9 (308)
T PF14800_consen 1 WRNGQVIVV 9 (308)
T ss_pred CCCCeEEEE
Confidence 999999985
No 24
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=20.75 E-value=68 Score=29.49 Aligned_cols=36 Identities=14% Similarity=0.334 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Q 016577 346 DRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSL 381 (387)
Q Consensus 346 ~rINe~~~~Lr~LIP~~~K~dKasIL~~AIeYIk~L 381 (387)
+-|-+||-+|+++||...+.--.....-++.++|.+
T Consensus 49 ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKST 84 (145)
T ss_pred CcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999776655556666677777665
No 25
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.67 E-value=40 Score=34.97 Aligned_cols=12 Identities=50% Similarity=0.941 Sum_probs=10.5
Q ss_pred chhhhhhhcCCe
Q 016577 27 NELVELLWQNGH 38 (387)
Q Consensus 27 deLvELLW~NGq 38 (387)
.-|||+||++|+
T Consensus 250 gTlvE~lw~~g~ 261 (358)
T COG1244 250 GTLVEKLWRRGL 261 (358)
T ss_pred hhHHHHHHHcCC
Confidence 459999999996
Done!