Query 016577
Match_columns 387
No_of_seqs 212 out of 1122
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 15:54:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a0a_A BHLH, protein (phosphat 99.6 2.5E-16 8.5E-21 121.5 4.2 53 334-386 3-62 (63)
2 4h10_B Circadian locomoter out 99.6 1E-15 3.5E-20 121.0 6.3 55 331-385 6-61 (71)
3 1an4_A Protein (upstream stimu 99.6 3.8E-16 1.3E-20 120.0 3.2 54 333-386 5-64 (65)
4 1am9_A Srebp-1A, protein (ster 99.6 8.2E-16 2.8E-20 123.8 5.2 55 332-386 5-60 (82)
5 4h10_A ARYL hydrocarbon recept 99.6 5.5E-16 1.9E-20 122.9 2.9 55 329-383 5-63 (73)
6 4ati_A MITF, microphthalmia-as 99.6 2.8E-15 9.6E-20 128.4 6.6 60 327-386 21-84 (118)
7 1nkp_B MAX protein, MYC proto- 99.4 9.4E-14 3.2E-18 111.4 5.3 53 334-386 3-57 (83)
8 1hlo_A Protein (transcription 99.4 8.9E-14 3E-18 111.0 5.0 54 333-386 12-67 (80)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 2E-13 6.9E-18 111.4 5.2 53 334-386 7-62 (88)
10 3u5v_A Protein MAX, transcript 99.4 3.7E-13 1.3E-17 107.4 5.1 52 335-386 7-62 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 3.8E-12 1.3E-16 102.3 6.1 52 335-386 3-57 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.2 3.7E-11 1.3E-15 94.0 6.1 53 334-386 13-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.1 7.9E-11 2.7E-15 90.0 6.4 52 335-386 4-58 (60)
14 4f3l_A Mclock, circadian locom 99.1 7.4E-11 2.5E-15 115.1 6.5 53 332-384 11-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 1.5E-10 5E-15 114.5 5.1 55 329-383 9-67 (387)
16 4ath_A MITF, microphthalmia-as 98.7 1.8E-08 6.1E-13 81.7 5.8 43 344-386 3-49 (83)
17 2lfh_A DNA-binding protein inh 98.7 6.5E-09 2.2E-13 81.4 2.2 46 338-383 19-67 (68)
18 4aya_A DNA-binding protein inh 98.2 2.3E-06 7.8E-11 71.2 6.6 47 340-386 32-81 (97)
19 3muj_A Transcription factor CO 59.3 12 0.00042 32.7 5.0 35 347-381 95-133 (138)
20 1xkm_B Distinctin chain B; por 27.6 53 0.0018 20.7 2.8 19 368-386 3-21 (26)
21 1pd7_B MAD1; PAH2, SIN3, eukar 21.8 74 0.0025 20.4 2.7 22 364-385 1-22 (26)
22 2fhx_A SPM-1; metallo-beta-lac 20.9 50 0.0017 28.8 2.5 31 357-387 216-246 (246)
No 1
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.61 E-value=2.5e-16 Score=121.46 Aligned_cols=53 Identities=30% Similarity=0.476 Sum_probs=49.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCC-------CCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 334 AEVHNLSERRRRDRINEKMRALQELIPHC-------NKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 334 ~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~-------~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
+.+|+++||+||++||..|.+|+.|||.+ .|++||+||++||+||++||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999955 467899999999999999999886
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.59 E-value=1e-15 Score=120.95 Aligned_cols=55 Identities=27% Similarity=0.475 Sum_probs=50.4
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHHHHHHHHh
Q 016577 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQL 385 (387)
Q Consensus 331 ~~~~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~-~K~dKasIL~~AIeYIk~Lq~qv 385 (387)
..++.+|+++||+||++||++|.+|+.|||.+ .|+||++||++||+||++||.++
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~ 61 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEIT 61 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 34567999999999999999999999999975 59999999999999999999875
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=3.8e-16 Score=120.03 Aligned_cols=54 Identities=33% Similarity=0.553 Sum_probs=50.1
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhcCCCCC------CCCHHHHHHHHHHHHHHHHHHhc
Q 016577 333 AAEVHNLSERRRRDRINEKMRALQELIPHCN------KTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 333 ~~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~~------K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
++..|+++||+||++||+.|.+|+.|||.+. |++|++||++||+||++||.+++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999999999886 78999999999999999999875
No 4
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.59 E-value=8.2e-16 Score=123.80 Aligned_cols=55 Identities=35% Similarity=0.521 Sum_probs=51.6
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 332 RAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 332 ~~~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~-~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
.++..|+++||+||++||++|.+|+.|||++ .|+||++||.+||+||++||.+++
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~ 60 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQ 60 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999998 799999999999999999999875
No 5
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.57 E-value=5.5e-16 Score=122.91 Aligned_cols=55 Identities=38% Similarity=0.619 Sum_probs=50.5
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHHHHH
Q 016577 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSLQL 383 (387)
Q Consensus 329 kr~~~~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~----~K~dKasIL~~AIeYIk~Lq~ 383 (387)
+.++++..|+++||+||++||+.|.+|+.|||.| .|+||++||+.||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4556778999999999999999999999999977 699999999999999999973
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.56 E-value=2.8e-15 Score=128.38 Aligned_cols=60 Identities=35% Similarity=0.641 Sum_probs=46.8
Q ss_pred CccccccccccchhHHHHHHHHHHHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHHhc
Q 016577 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 327 ~~kr~~~~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~~----K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
..++++++..|+++||+||++||++|.+|+.|||.|. |++|++||++||+||++||.+++
T Consensus 21 ~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~ 84 (118)
T 4ati_A 21 LAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 84 (118)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445566779999999999999999999999999885 67899999999999999998875
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.43 E-value=9.4e-14 Score=111.41 Aligned_cols=53 Identities=32% Similarity=0.604 Sum_probs=49.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 334 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 334 ~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~--~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
+..||..||+||++||+.|..|+.+||.+ .|++|++||..||+||++|+.+++
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~ 57 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999975 699999999999999999998764
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=8.9e-14 Score=111.05 Aligned_cols=54 Identities=31% Similarity=0.590 Sum_probs=50.1
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 333 AAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 333 ~~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~--~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
.+..|+.+||+||++||+.|..|+.|||.+ .|++|++||..||+||++|+.+++
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~ 67 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999976 589999999999999999998875
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=2e-13 Score=111.42 Aligned_cols=53 Identities=34% Similarity=0.535 Sum_probs=48.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 334 AEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 334 ~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~---~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
...||.+||+||+.||++|..|+.+||.+ .|++|++||..||+||+.|+.+.+
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~ 62 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999975 599999999999999999998753
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.37 E-value=3.7e-13 Score=107.38 Aligned_cols=52 Identities=33% Similarity=0.498 Sum_probs=46.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCCC---CCCC-CHHHHHHHHHHHHHHHHHHhc
Q 016577 335 EVHNLSERRRRDRINEKMRALQELIPH---CNKT-DKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 335 ~~Hn~~ERrRR~rINe~~~~Lr~LIP~---~~K~-dKasIL~~AIeYIk~Lq~qvq 386 (387)
..||..||+||+.||++|.+|+.+||. ..|. +|+.||..||+||++|+++|+
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~ 62 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVR 62 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999995 3465 799999999999999999885
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.28 E-value=3.8e-12 Score=102.32 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=47.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 335 EVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 335 ~~Hn~~ERrRR~rINe~~~~Lr~LIP~~---~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
..||..||+||+.||++|..|+++||.+ .|.+|+.||..||+||+.|+.+.+
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~ 57 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999955 589999999999999999998753
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.16 E-value=3.7e-11 Score=94.02 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=48.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 334 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 334 ~~~Hn~~ERrRR~rINe~~~~Lr~LIP~~--~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
...||..||+|+..||+.|..|+.+||.. .|++|+.||..||+||++|+..++
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34799999999999999999999999964 589999999999999999998775
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.12 E-value=7.9e-11 Score=89.98 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=48.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 335 EVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 335 ~~Hn~~ERrRR~rINe~~~~Lr~LIP~~---~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
..||..||+|+..||+.|..|+.+||.. .|++|+.||..||+||+.|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999965 489999999999999999999875
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.09 E-value=7.4e-11 Score=115.12 Aligned_cols=53 Identities=28% Similarity=0.543 Sum_probs=42.5
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q 016577 332 RAAEVHNLSERRRRDRINEKMRALQELIP-HCNKTDKASMLDEAIEYLKSLQLQ 384 (387)
Q Consensus 332 ~~~~~Hn~~ERrRR~rINe~~~~Lr~LIP-~~~K~dKasIL~~AIeYIk~Lq~q 384 (387)
.++..|+++||+||++||+.|.+|+.||| ...|+||++||..||.|||.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 34458999999999999999999999999 556999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.02 E-value=1.5e-10 Score=114.49 Aligned_cols=55 Identities=36% Similarity=0.544 Sum_probs=48.9
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHhcCC----CCCCCCHHHHHHHHHHHHHHHHH
Q 016577 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIP----HCNKTDKASMLDEAIEYLKSLQL 383 (387)
Q Consensus 329 kr~~~~~~Hn~~ERrRR~rINe~~~~Lr~LIP----~~~K~dKasIL~~AIeYIk~Lq~ 383 (387)
|.++++++|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+.
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 33556779999999999999999999999999 55799999999999999999974
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.69 E-value=1.8e-08 Score=81.72 Aligned_cols=43 Identities=33% Similarity=0.631 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHHhc
Q 016577 344 RRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 344 RR~rINe~~~~Lr~LIP~~~----K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
-|+.||++|.+|..|||.++ |.+|++||..+|+||++||++++
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~ 49 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 49 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999774 68999999999999999998653
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.66 E-value=6.5e-09 Score=81.42 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=41.8
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHHHHHHH
Q 016577 338 NLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQL 383 (387)
Q Consensus 338 n~~ERrRR~rINe~~~~Lr~LIP~~---~K~dKasIL~~AIeYIk~Lq~ 383 (387)
+..||+|+..||+.|..||.+||.. .|++|..||..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4568999999999999999999955 489999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.20 E-value=2.3e-06 Score=71.23 Aligned_cols=47 Identities=28% Similarity=0.456 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHHHHHHHHhc
Q 016577 340 SERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 340 ~ERrRR~rINe~~~~Lr~LIP~~---~K~dKasIL~~AIeYIk~Lq~qvq 386 (387)
.||.|-..||+.|..||.+||.. .|+.|..+|..||+||+.|+..++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 35778899999999999999965 489999999999999999998764
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=59.25 E-value=12 Score=32.73 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHHH
Q 016577 347 RINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSL 381 (387)
Q Consensus 347 rINe~~~~Lr~LIP~~----~K~dKasIL~~AIeYIk~L 381 (387)
.|...|..|+.+||.- .++-|-.||.+|.+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4889999999999944 4688999999999999877
No 20
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=27.64 E-value=53 Score=20.65 Aligned_cols=19 Identities=42% Similarity=0.475 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 016577 368 ASMLDEAIEYLKSLQLQLQ 386 (387)
Q Consensus 368 asIL~~AIeYIk~Lq~qvq 386 (387)
.+-|-+|-.|+.+|+++++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4668889999999998764
No 21
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=21.84 E-value=74 Score=20.39 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 016577 364 KTDKASMLDEAIEYLKSLQLQL 385 (387)
Q Consensus 364 K~dKasIL~~AIeYIk~Lq~qv 385 (387)
++....+|=+|.+||...+++-
T Consensus 1 ~~~nvq~LLeAAeyLErrEre~ 22 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERREREA 22 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhh
Confidence 3557789999999999887754
No 22
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=20.94 E-value=50 Score=28.82 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=23.8
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 016577 357 ELIPHCNKTDKASMLDEAIEYLKSLQLQLQV 387 (387)
Q Consensus 357 ~LIP~~~K~dKasIL~~AIeYIk~Lq~qvq~ 387 (387)
.++|+-...-....|.++++||+.|+.+|++
T Consensus 216 ~i~pgHg~~~~~~~l~~~~~~l~~l~~~v~~ 246 (246)
T 2fhx_A 216 IVIPGHGEWGGPEMVNKTIKVAEKAVGEMRL 246 (246)
T ss_dssp EEEESBSCCBSTHHHHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566555444468899999999999999874
Done!