BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016578
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/323 (58%), Positives = 235/323 (72%), Gaps = 34/323 (10%)
Query: 47 CHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPAYRLLHHVCSICCSCSFAGEAHSLKVKE 106
C STV+ GWFSE +P WP GEAHSLKV++
Sbjct: 39 CFSTVIPGWFSEX--------------SPXWP------------------GEAHSLKVEK 66
Query: 107 ILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXX 166
+LF+GKS+YQ+V+VF+S YGKVLVLDG++QLTE+DECAYQE I HLPLCSIP+PK
Sbjct: 67 VLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEXITHLPLCSIPNPKKVLV 126
Query: 167 XXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226
RE++RH S+E ID CEIDK V+DVSK++FP++A+G+EDPRV L IGD V F
Sbjct: 127 IGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF 186
Query: 227 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIE 286
L+ G YDA+IVDSSDP+GPA+EL EKPFF ++A+ALRPGGV+C AES+WLH +IE
Sbjct: 187 LKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHXDIIE 246
Query: 287 DMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHK 346
D++S CRE FKGSV+YAW SVPTYPSG+IGF +CSTEGP VDF +P+NPI+ E + K
Sbjct: 247 DIVSNCREIFKGSVNYAWTSVPTYPSGVIGFXLCSTEGPDVDFKHPLNPID--ESSSKSN 304
Query: 347 RELRFYNSEIHSAAFALPAFLKR 369
L+FYN+EIHSAAF LP+F K+
Sbjct: 305 GPLKFYNAEIHSAAFCLPSFAKK 327
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/280 (48%), Positives = 176/280 (62%), Gaps = 9/280 (3%)
Query: 92 SCSFAGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIA 151
S + G+A SLK+K+IL++ KS+YQ VLVFES YGKVLVLDG++QLTEKDE AY EM+
Sbjct: 48 SIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMT 107
Query: 152 HLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGF 211
H+P+ PK RE+ ++ SVE IDICEID+ VI+VSK YF ++ G+
Sbjct: 108 HVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY 167
Query: 212 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 271
ED RV + I DA +FL V YD IIVDSSDP+GPA+ L + F++ I AL+P G
Sbjct: 168 EDKRVNVFIEDASKFLENVTNT-YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYC 226
Query: 272 CNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVN 331
ES+W+H I++MI ++ FK V YA S+PTYP G IG L CS
Sbjct: 227 VAQCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSK--TDTGLTK 283
Query: 332 PINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 371
P +E E AD L++YN E HSAAF LPAFL +E+
Sbjct: 284 PNKKLESKEFAD-----LKYYNYENHSAAFKLPAFLLKEI 318
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/280 (48%), Positives = 176/280 (62%), Gaps = 9/280 (3%)
Query: 92 SCSFAGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIA 151
S + G+A SLK+K+IL++ KS+YQ VLVFES YGKVLVLDG++QLTEKDE AY EM+
Sbjct: 9 SIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMT 68
Query: 152 HLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGF 211
H+P+ PK RE+ ++ SVE IDICEID+ VI+VSK YF ++ G+
Sbjct: 69 HVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY 128
Query: 212 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 271
ED RV + I DA +FL V YD IIVDSSDP+GPA+ L + F++ I AL+P G
Sbjct: 129 EDKRVNVFIEDASKFLENV-TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYC 187
Query: 272 CNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVN 331
ES+W+H I++MI ++ FK V YA S+PTYP G IG L CS
Sbjct: 188 VAQCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCS--KTDTGLTK 244
Query: 332 PINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 371
P +E E AD L++YN E HSAAF LPAFL +E+
Sbjct: 245 PNKKLESKEFAD-----LKYYNYENHSAAFKLPAFLLKEI 279
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 136/280 (48%), Positives = 176/280 (62%), Gaps = 9/280 (3%)
Query: 92 SCSFAGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIA 151
S + G+A SLK+K+IL++ KS+YQ VLVFES YGKVLVLDG++QLTEKDE AY EM+
Sbjct: 10 SIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMT 69
Query: 152 HLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGF 211
H+P+ PK RE+ ++ SVE IDICEID+ VI+VSK YF ++ G+
Sbjct: 70 HVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY 129
Query: 212 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 271
ED RV + I DA +FL V YD IIVDSSDP+GPA+ L + F++ I AL+P G
Sbjct: 130 EDKRVNVFIEDASKFLENV-TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYC 188
Query: 272 CNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVN 331
ES+W+H I++MI ++ FK V YA S+PTYP G IG L CS
Sbjct: 189 VAQCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSK--TDTGLTK 245
Query: 332 PINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 371
P +E E AD L++YN E HSAAF LPAFL +E+
Sbjct: 246 PNKKLESKEFAD-----LKYYNYENHSAAFKLPAFLLKEI 280
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 188/282 (66%), Gaps = 7/282 (2%)
Query: 92 SCS-FAGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMI 150
+CS + G+A SL+V+++L +S YQ++LVF S YG VLVLDG++Q TE+DE +YQEMI
Sbjct: 26 TCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMI 85
Query: 151 AHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVG 210
A+LPLCS P+P+ RE+ +H SVE + CEID+ VI VSKK+ P +A+G
Sbjct: 86 ANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG 145
Query: 211 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 270
+ ++ LH+GD EF++Q + +D II DSSDP+GPA+ L ++ ++ + AL+ GV
Sbjct: 146 YSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGV 204
Query: 271 LCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFV 330
LC E WLH LI++M C+ F V YA+ ++PTYPSG IGF++CS + P +F
Sbjct: 205 LCCQGECQWLHLDLIKEMRQFCQSLFP-VVAYAYCTIPTYPSGQIGFMLCS-KNPSTNFQ 262
Query: 331 NPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 372
P+ P+ + + A + +L++YNS++H AAF LP F ++ ++
Sbjct: 263 EPVQPLTQQQVA---QMQLKYYNSDVHRAAFVLPEFARKALN 301
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 188/282 (66%), Gaps = 7/282 (2%)
Query: 92 SCS-FAGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMI 150
+CS + G+A SL+V+++L +S YQ++LVF S YG VLVLDG++Q TE+DE +YQEMI
Sbjct: 26 TCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMI 85
Query: 151 AHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVG 210
A+LPLCS P+P+ RE+ +H SVE + CEID+ VI VSKK+ P +A+G
Sbjct: 86 ANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG 145
Query: 211 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 270
+ ++ LH+GD EF++Q + +D II DSSDP+GPA+ L ++ ++ + AL+ GV
Sbjct: 146 YSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGV 204
Query: 271 LCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFV 330
LC E WLH LI++M C+ F V YA+ ++PTYPSG IGF++CS + P +F
Sbjct: 205 LCCQGECQWLHLDLIKEMRQFCQSLFP-VVAYAYCTIPTYPSGQIGFMLCS-KNPSTNFQ 262
Query: 331 NPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 372
P+ P+ + + A + +L++YNS++H AAF LP F ++ ++
Sbjct: 263 EPVQPLTQQQVA---QMQLKYYNSDVHRAAFVLPEFARKALN 301
>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
pdb|2B2C|B Chain B, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
Length = 314
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/276 (46%), Positives = 178/276 (64%), Gaps = 6/276 (2%)
Query: 94 SFAGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHL 153
++ G+A SL+VK++LF KS+YQ+VLVFES YG VLVLDGIVQ TE+DE +YQEM+AHL
Sbjct: 42 AWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHL 101
Query: 154 PLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED 213
P+ + P PK RE+ +H+SVE + +CEID+MVIDV+KK+ P ++ GF
Sbjct: 102 PMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSH 161
Query: 214 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273
P++ L GD EFL+ + ++D II DSSDPVGPA+ L + +++ + AL+ G+L +
Sbjct: 162 PKLDLFCGDGFEFLKN-HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS 220
Query: 274 MAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPI 333
ES+WLH LI +++ R+ F +V YA + V TYPSG +G+LIC+ +
Sbjct: 221 QGESVWLHLPLIAHLVAFNRKIFP-AVTYAQSIVSTYPSGSMGYLICAKNANR----DVT 275
Query: 334 NPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKR 369
P L LRFYNSE+H AAF LP F+K
Sbjct: 276 TPARTLTAEQIKALNLRFYNSEVHKAAFVLPQFVKN 311
>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWB|B Chain B, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWC|A Chain A, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
pdb|3BWC|B Chain B, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
Length = 304
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 164/278 (58%), Gaps = 8/278 (2%)
Query: 94 SFAGEAHSLKVKEILFKGKSEYQEVLVFESLA---YGKVLVLDGIVQLTEKDECAYQEMI 150
+ G+A SL+V+++L+ +++Q + +FES +G V LDG +Q+T+ DE Y E++
Sbjct: 26 QWPGQAXSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVXALDGCIQVTDYDEFVYHEVL 85
Query: 151 AHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVG 210
H LCS P P+ RE+ RH +VE D+ +ID V + SK++FP+++
Sbjct: 86 GHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVXEQSKQHFPQISRS 145
Query: 211 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 270
DPR + +GD + F+RQ P YD +I+D++DP GPA +L + F+ + + L+P G+
Sbjct: 146 LADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGI 205
Query: 271 LCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFV 330
CN ES+WL LIE RET SV YA VPTYP G IG L+CS + VD
Sbjct: 206 CCNQGESIWLDLELIEKXSRFIRETGFASVQYALXHVPTYPCGSIGTLVCSKKA-GVDVT 264
Query: 331 NPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLK 368
P+ P+E A ++L++Y+SE H A+FALP F +
Sbjct: 265 KPLRPVEDXPFA----KDLKYYDSEXHKASFALPRFAR 298
>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
Length = 275
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 148/267 (55%), Gaps = 12/267 (4%)
Query: 101 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPS 160
++KV + L ++E+Q + + E+ +G +L LDG+V +EKDE Y EM+AH+PL + P+
Sbjct: 16 TMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPN 75
Query: 161 PKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI 220
P+ REI +H SV+ + +ID VI+ SKK+ P +A +DPRV + +
Sbjct: 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV 135
Query: 221 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWL 280
D + + +YD I+VDS++PVGPA L K F+ IAKAL+ G+ ++ W
Sbjct: 136 DDGFMHIAK-SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWF 194
Query: 281 HTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLE 340
LI ++ +E F + Y A++PTYPSG+ F I S + +P+ +E
Sbjct: 195 TPELITNVQRDVKEIFPITKLYT-ANIPTYPSGLWTFTIGSKK------YDPL----AVE 243
Query: 341 GADKHKRELRFYNSEIHSAAFALPAFL 367
+ E ++Y +IH AAF LP F+
Sbjct: 244 DSRFFDIETKYYTKDIHKAAFVLPKFV 270
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 147/276 (53%), Gaps = 14/276 (5%)
Query: 102 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP 161
+K+ +++ G+S+ Q + +FE+ G V LDGI TEKDE Y EM+AH+P+ P+P
Sbjct: 32 MKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNP 91
Query: 162 KTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG 221
K RE+ +HDSVE +CE+D +VI+ ++KY + + GF+DPR + I
Sbjct: 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIA 151
Query: 222 DAVEFLRQVPRGKYDAIIVDSSDPV-GPAQELVEKPFFDTIAKALRPGGVLCNMAESMWL 280
+ E++R+ + ++D II+DS+DP G L + F+ AL+ GV E +
Sbjct: 152 NGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFY 210
Query: 281 HTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKL- 339
+ + F + Y + TYPSG+ + S I+PI+
Sbjct: 211 DIGWFKLAYRRISKVFPITRVYL-GFMTTYPSGMWSYTFAS---------KGIDPIKDFD 260
Query: 340 -EGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 374
E K +EL++YN E+H A+FALP F+K+E+ ++
Sbjct: 261 PEKVRKFNKELKYYNEEVHVASFALPNFVKKELGLM 296
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 140/270 (51%), Gaps = 11/270 (4%)
Query: 102 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP 161
V +L+ K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE Y EM+ H+PL +
Sbjct: 25 FAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHA 84
Query: 162 KTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVG-FEDPRVRLHI 220
K RE++RH +VE I + EID V+ ++Y P G ++DPR +L I
Sbjct: 85 KHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVI 144
Query: 221 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWL 280
D V F+ Q + +D II D +DP+GP + L F++ + L PGG+ +L
Sbjct: 145 DDGVNFVNQTSQ-TFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFL 203
Query: 281 HTHLIEDMISICRET--FKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEK 338
E+ I R+ + V + A++PTY GI+ F + I
Sbjct: 204 QQ---EEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARF 260
Query: 339 LEGADKHKRELRFYNSEIHSAAFALPAFLK 368
L K R+YN IH+AAFALP +L+
Sbjct: 261 LASGLK----CRYYNPAIHTAAFALPQYLQ 286
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 14/222 (6%)
Query: 103 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK 162
+++ ++ GK+ +Q+ +FES +GKVL+LD VQ TE+DE Y E + H + + P PK
Sbjct: 20 RMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPK 79
Query: 163 TXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVG-FEDPRVRLHIG 221
RE+ +H +VE + +ID +++V+K++ PE G F+DPR L I
Sbjct: 80 RVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID 139
Query: 222 DAVEFLRQVPRGKYDAIIVDSSDPVG---PAQELVEKPFFDTIAKALRPGGVLCNMAESM 278
DA +L + +YD +I+D +DPVG PA+ L F+ + L PGGV+ A +
Sbjct: 140 DARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQAGMI 198
Query: 279 WLHTHLIEDMI-SICRETFKGSVHYAWASVPTYPSGIIGFLI 319
L H + ++ RE F+ V +Y + I GF +
Sbjct: 199 LLTHHRVHPVVHRTVREAFR--------YVRSYKNHIPGFFL 232
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 14/222 (6%)
Query: 103 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPK 162
+++ ++ GK+ +Q+ +FES +GKVL+LD VQ TE+DE Y E + H + + P PK
Sbjct: 20 RMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPK 79
Query: 163 TXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVG-FEDPRVRLHIG 221
RE+ +H +VE + +ID +++V+K++ PE G F+DPR L I
Sbjct: 80 RVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID 139
Query: 222 DAVEFLRQVPRGKYDAIIVDSSDPVG---PAQELVEKPFFDTIAKALRPGGVLCNMAESM 278
DA +L + +YD +I+D +DPVG PA+ L F+ + L PGGV+ +
Sbjct: 140 DARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198
Query: 279 WLHTHLIEDMI-SICRETFKGSVHYAWASVPTYPSGIIGFLI 319
L H + ++ RE F+ V +Y + I GF +
Sbjct: 199 LLTHHRVHPVVHRTVREAFR--------YVRSYKNHIPGFFL 232
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 144/289 (49%), Gaps = 30/289 (10%)
Query: 97 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLC 156
G + K+K+ +++ S+YQ++ V+E+ +G++L LDG VQL E +Y E + H +
Sbjct: 12 GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAML 71
Query: 157 SIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFP------ELAVG 210
+ P PK RE+ +HD E+I + EID+ VI VSK E +
Sbjct: 72 AHPKPKRVLVIGGGDGGTVREVLQHDVDEVI-MVEIDEDVIMVSKDLIKIDNGLLEAMLN 130
Query: 211 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 270
+ + +L IGD EF++ RG +D II DS+DPVGPA+ L + F+ + AL G+
Sbjct: 131 GKHEKAKLTIGDGFEFIKN-NRG-FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 188
Query: 271 LCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGF-----LICSTEGP 325
A S++L T +++IS +E K + V Y +IG+ + +G
Sbjct: 189 YVTQAGSVYLFT---DELISAYKEMKK-----VFDRVYYYSFPVIGYASPWAFLVGVKG- 239
Query: 326 HVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 374
+DF K++ K +L +Y+ +H F +P +++ + L
Sbjct: 240 DIDFT-------KIDRERAKKLQLEYYDPLMHETLFQMPKYIRETLQRL 281
>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2ZSU|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|E Chain E, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|F Chain F, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
Length = 280
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 140/282 (49%), Gaps = 29/282 (10%)
Query: 97 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLC 156
G + KVK + + +SEYQ++ V+E+ +GK+L +DG VQL + E +Y E + H +
Sbjct: 13 GYGVAFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAML 72
Query: 157 SIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFP------ELAVG 210
+ P+P+ RE+ +H+ VE + + EIDK VI++S KY E +
Sbjct: 73 AHPNPRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEKMLS 132
Query: 211 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 270
+ + +L IGD V+F+ + +D IIVDS+DPVGPA+ L + F+ +AL G+
Sbjct: 133 DKHEKGKLIIGDGVKFIEE--NSGFDVIIVDSTDPVGPAEMLFSEEFYKNAYRALNDPGI 190
Query: 271 LCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGF-----LICSTEGP 325
A S++L T R+ F +Y++ +IG+ + +G
Sbjct: 191 YVTQAGSVYLFTDEFLTAYRKMRKVFDKVYYYSFP--------VIGYASPWAFLVGVKGS 242
Query: 326 HVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFL 367
+DF+ K++ K L +Y+ + H F +P ++
Sbjct: 243 -IDFM-------KVDAEKGKKLGLEYYDPDKHETLFQMPRYI 276
>pdb|2CMG|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMG|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|C Chain C, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
Length = 262
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 110/263 (41%), Gaps = 32/263 (12%)
Query: 108 LFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQ-EMIAHLPLCSIPSPKTXXX 166
L +SE+ + +F+S +G++ +L+ QL K+ + E++AH+ C+ K
Sbjct: 21 LLDVRSEHNILEIFKSKDFGEIAMLNR--QLLFKNFLHIESELLAHMGGCTKKELKEVLI 78
Query: 167 XXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226
++ ++D+ ID + D+ ++D +FP F + + + A +
Sbjct: 79 VDGFDLELAHQLFKYDTH--IDFVQADEKILDSFISFFPH----FHEVKNNKNFTHAKQL 132
Query: 227 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIE 286
L + KYD I + D + + L+ GV ++A+ L ++
Sbjct: 133 L-DLDIKKYDLIFCLQEPDIHR---------IDGLKRMLKEDGVFISVAKHPLLEHVSMQ 182
Query: 287 DMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEG-PHVDFVNPINPIEKLEGADKH 345
+ + F ++ + P G++ S + P D + P IE L
Sbjct: 183 NALKNMGGVFSVAMPFV---APLRILSNKGYIYASFKTHPLKDLMTP--KIEALTS---- 233
Query: 346 KRELRFYNSEIHSAAFALPAFLK 368
+R+YN +IH AAFALP L+
Sbjct: 234 ---VRYYNEDIHRAAFALPKNLQ 253
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 97 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLC 156
G + E+++ S YQ + + S +G +L+L G V L E D AY I
Sbjct: 144 GRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSGKE 202
Query: 157 SIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYF 204
+ K EI + +++ + EID+MVID KKY
Sbjct: 203 DY-TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYM 248
>pdb|3GJY|A Chain A, Crystal Structure Of A Probable Spermidine Synthase From
Corynebacterium Glutamicum Atcc 13032
Length = 317
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 189 ICEIDKMVIDVSKKYF--PELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV 246
+ E+D + +S+++F P PRV++ + DA D II D
Sbjct: 118 VVELDAELARLSREWFDIPRA------PRVKIRVDDARXVAESFTPASRDVIIRDVFAGA 171
Query: 247 GPAQELVEKPFFDTIAKALRPGGV 270
Q FF+ + L PGG+
Sbjct: 172 ITPQNFTTVEFFEHCHRGLAPGGL 195
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 50 TVVSGWFS----ESQSTSDKTGKTMYFNNPMWPAYRLLHHVCSICCSCSFAGEAHSLKVK 105
TV WF E+ +T D++G T +P W A L + +C F ++ V
Sbjct: 3 TVAHMWFDNQIHEADTTEDQSGATFDKRSPTWTA---LSRIAGLCNRAVFKAGQENISVS 59
Query: 106 EILFKGKSEYQEVLVFESLAYGKV 129
+ G + +L L+ G V
Sbjct: 60 KRDTAGDASESALLKCIELSCGSV 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,932,445
Number of Sequences: 62578
Number of extensions: 488099
Number of successful extensions: 879
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 22
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)