Query 016578
Match_columns 387
No_of_seqs 498 out of 3050
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:06:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02366 spermidine synthase 100.0 1.8E-64 3.9E-69 493.9 32.0 306 38-375 1-306 (308)
2 KOG1562 Spermidine synthase [A 100.0 1.4E-66 3.1E-71 491.2 14.6 314 31-374 21-334 (337)
3 PRK00536 speE spermidine synth 100.0 4.6E-60 9.9E-65 451.5 24.4 250 97-374 10-259 (262)
4 COG0421 SpeE Spermidine syntha 100.0 4.3E-57 9.4E-62 435.5 25.4 269 97-372 13-281 (282)
5 PRK00811 spermidine synthase; 100.0 3.3E-56 7.1E-61 432.0 29.0 270 97-372 13-283 (283)
6 PLN02823 spermine synthase 100.0 3.7E-53 8E-58 418.2 30.2 273 97-376 40-317 (336)
7 TIGR00417 speE spermidine synt 100.0 2.5E-51 5.4E-56 395.3 28.1 261 97-366 9-270 (270)
8 PF01564 Spermine_synth: Sperm 100.0 1E-50 2.2E-55 386.0 24.0 230 97-327 13-242 (246)
9 PRK03612 spermidine synthase; 100.0 2.3E-44 4.9E-49 375.6 24.6 254 99-368 233-494 (521)
10 PRK01581 speE spermidine synth 100.0 1.3E-43 2.8E-48 349.8 24.7 218 103-325 95-316 (374)
11 COG4262 Predicted spermidine s 100.0 3.3E-41 7.1E-46 326.0 19.8 249 101-366 231-483 (508)
12 PRK04457 spermidine synthase; 99.9 2.8E-23 6.1E-28 199.6 22.9 199 111-323 12-217 (262)
13 PF12847 Methyltransf_18: Meth 99.6 8.6E-15 1.9E-19 121.2 9.8 108 161-274 2-110 (112)
14 COG2521 Predicted archaeal met 99.6 1.1E-13 2.4E-18 128.5 15.6 166 128-297 102-271 (287)
15 PF13659 Methyltransf_26: Meth 99.5 1.9E-13 4.1E-18 114.1 11.9 109 162-274 2-114 (117)
16 PF05175 MTS: Methyltransferas 99.4 5.2E-13 1.1E-17 120.2 10.5 107 160-273 31-138 (170)
17 TIGR00091 tRNA (guanine-N(7)-) 99.4 2E-12 4.3E-17 118.8 14.5 114 160-277 16-134 (194)
18 PRK00121 trmB tRNA (guanine-N( 99.4 4E-12 8.8E-17 117.6 14.6 127 160-294 40-171 (202)
19 COG4123 Predicted O-methyltran 99.4 1E-11 2.2E-16 117.8 17.3 131 159-297 43-188 (248)
20 TIGR02752 MenG_heptapren 2-hep 99.4 3.1E-11 6.8E-16 113.0 18.2 115 147-274 35-150 (231)
21 PLN02476 O-methyltransferase 99.4 2.7E-11 5.8E-16 117.2 17.0 105 159-273 117-226 (278)
22 COG4122 Predicted O-methyltran 99.4 1.4E-11 3E-16 115.1 14.0 105 159-273 58-164 (219)
23 PF01596 Methyltransf_3: O-met 99.3 3.8E-12 8.2E-17 118.3 10.1 105 159-273 44-153 (205)
24 PF13847 Methyltransf_31: Meth 99.3 6.6E-12 1.4E-16 110.4 11.0 108 159-275 2-110 (152)
25 TIGR00138 gidB 16S rRNA methyl 99.3 3.4E-11 7.3E-16 109.7 15.7 101 160-275 42-142 (181)
26 TIGR02469 CbiT precorrin-6Y C5 99.3 1.5E-11 3.3E-16 102.9 12.2 105 159-275 18-122 (124)
27 PRK15128 23S rRNA m(5)C1962 me 99.3 2.7E-11 5.9E-16 123.0 16.3 128 159-289 219-353 (396)
28 PLN02781 Probable caffeoyl-CoA 99.3 4E-11 8.7E-16 113.6 16.2 105 159-273 67-176 (234)
29 PRK15001 SAM-dependent 23S rib 99.3 1.8E-11 4E-16 123.3 13.4 137 147-297 218-355 (378)
30 COG4106 Tam Trans-aconitate me 99.3 1.2E-11 2.5E-16 114.0 10.7 115 146-279 19-133 (257)
31 TIGR03533 L3_gln_methyl protei 99.3 3.9E-11 8.5E-16 116.8 15.1 111 160-276 121-252 (284)
32 COG2226 UbiE Methylase involve 99.3 5E-11 1.1E-15 112.8 15.1 106 159-274 50-155 (238)
33 PRK01683 trans-aconitate 2-met 99.3 2.6E-11 5.7E-16 115.6 13.2 102 159-276 30-131 (258)
34 PRK14121 tRNA (guanine-N(7)-)- 99.3 4E-11 8.8E-16 120.7 14.7 116 160-279 122-239 (390)
35 PF08241 Methyltransf_11: Meth 99.3 1.3E-11 2.7E-16 98.1 8.9 95 165-273 1-95 (95)
36 PRK00107 gidB 16S rRNA methylt 99.3 7.9E-11 1.7E-15 107.9 14.9 102 159-275 44-145 (187)
37 PRK15451 tRNA cmo(5)U34 methyl 99.3 3.4E-11 7.5E-16 114.6 12.9 107 159-274 55-163 (247)
38 PRK08287 cobalt-precorrin-6Y C 99.3 1E-10 2.2E-15 106.5 15.1 118 159-295 30-147 (187)
39 PRK09489 rsmC 16S ribosomal RN 99.3 4.4E-11 9.5E-16 119.3 13.2 117 147-275 186-303 (342)
40 PRK11036 putative S-adenosyl-L 99.3 4.8E-11 1E-15 114.0 12.7 115 147-275 35-149 (255)
41 PF01209 Ubie_methyltran: ubiE 99.3 1.8E-11 3.9E-16 115.9 9.7 106 159-274 46-152 (233)
42 COG2230 Cfa Cyclopropane fatty 99.3 3.1E-11 6.7E-16 116.5 11.3 106 158-275 70-176 (283)
43 PRK14103 trans-aconitate 2-met 99.2 5.5E-11 1.2E-15 113.5 12.2 99 159-275 28-126 (255)
44 PRK00377 cbiT cobalt-precorrin 99.2 2E-10 4.4E-15 105.7 14.2 122 159-295 39-161 (198)
45 COG2813 RsmC 16S RNA G1207 met 99.2 9.3E-11 2E-15 113.6 12.3 147 132-297 134-281 (300)
46 PF13649 Methyltransf_25: Meth 99.2 3.2E-11 6.9E-16 98.8 7.8 96 164-269 1-101 (101)
47 PLN02244 tocopherol O-methyltr 99.2 1.3E-10 2.8E-15 115.9 13.5 106 159-274 117-222 (340)
48 PLN02233 ubiquinone biosynthes 99.2 1.3E-10 2.8E-15 111.8 12.9 109 159-274 72-181 (261)
49 PRK11805 N5-glutamine S-adenos 99.2 2.8E-10 6.1E-15 112.0 15.3 109 161-275 134-263 (307)
50 TIGR03704 PrmC_rel_meth putati 99.2 3.1E-10 6.7E-15 108.6 15.0 109 160-275 86-216 (251)
51 COG1092 Predicted SAM-dependen 99.2 1.6E-10 3.4E-15 116.7 13.3 126 160-288 217-349 (393)
52 PRK13942 protein-L-isoaspartat 99.2 1.4E-10 3E-15 108.1 12.1 111 145-274 64-175 (212)
53 COG2242 CobL Precorrin-6B meth 99.2 2.4E-10 5.2E-15 103.7 13.0 120 158-295 32-151 (187)
54 PF02353 CMAS: Mycolic acid cy 99.2 7.1E-11 1.5E-15 114.4 10.2 107 157-275 59-166 (273)
55 TIGR00080 pimt protein-L-isoas 99.2 1.5E-10 3.3E-15 107.9 12.0 111 146-275 66-177 (215)
56 PRK14966 unknown domain/N5-glu 99.2 5.8E-10 1.2E-14 113.2 17.0 150 113-274 209-380 (423)
57 TIGR00740 methyltransferase, p 99.2 3.1E-10 6.7E-15 107.3 14.1 107 159-274 52-160 (239)
58 PRK11207 tellurite resistance 99.2 1.7E-10 3.8E-15 106.2 12.1 112 148-273 21-132 (197)
59 TIGR03534 RF_mod_PrmC protein- 99.2 6.2E-10 1.3E-14 105.1 16.2 110 159-275 86-217 (251)
60 COG2518 Pcm Protein-L-isoaspar 99.2 1.3E-10 2.8E-15 107.4 11.0 99 159-275 71-169 (209)
61 PRK13944 protein-L-isoaspartat 99.2 2.2E-10 4.8E-15 106.2 12.6 111 146-274 61-172 (205)
62 PLN02589 caffeoyl-CoA O-methyl 99.2 3E-10 6.4E-15 108.4 13.7 105 159-273 78-188 (247)
63 PRK07402 precorrin-6B methylas 99.2 2.8E-10 6.1E-15 104.4 13.1 105 159-276 39-143 (196)
64 TIGR00537 hemK_rel_arch HemK-r 99.2 3.3E-10 7.1E-15 102.4 13.0 104 160-274 19-139 (179)
65 PF02390 Methyltransf_4: Putat 99.2 1.7E-10 3.8E-15 106.3 11.3 124 163-294 20-148 (195)
66 PRK14967 putative methyltransf 99.2 6.6E-10 1.4E-14 104.1 15.4 107 159-274 35-158 (223)
67 TIGR02072 BioC biotin biosynth 99.2 2.8E-10 6E-15 105.9 12.4 103 159-275 33-135 (240)
68 PTZ00098 phosphoethanolamine N 99.2 3.2E-10 6.9E-15 109.2 12.9 113 147-274 42-155 (263)
69 PRK10909 rsmD 16S rRNA m(2)G96 99.2 1.2E-09 2.6E-14 101.1 16.0 143 118-275 13-159 (199)
70 PF08242 Methyltransf_12: Meth 99.2 8.3E-12 1.8E-16 101.6 1.4 99 165-271 1-99 (99)
71 TIGR00536 hemK_fam HemK family 99.2 7.3E-10 1.6E-14 107.8 15.2 109 162-276 116-245 (284)
72 PLN03075 nicotianamine synthas 99.1 4.1E-10 9E-15 109.7 13.0 109 160-275 123-233 (296)
73 PRK04266 fibrillarin; Provisio 99.1 1.2E-09 2.7E-14 103.0 15.7 103 159-274 71-175 (226)
74 PF01135 PCMT: Protein-L-isoas 99.1 2.4E-10 5.1E-15 106.6 10.3 112 145-275 60-172 (209)
75 COG2519 GCD14 tRNA(1-methylade 99.1 5.2E-10 1.1E-14 105.8 12.1 118 159-295 93-211 (256)
76 PRK09328 N5-glutamine S-adenos 99.1 1.6E-09 3.6E-14 103.9 16.0 110 159-275 107-238 (275)
77 smart00828 PKS_MT Methyltransf 99.1 2.3E-10 4.9E-15 106.7 9.7 103 162-274 1-103 (224)
78 PRK10258 biotin biosynthesis p 99.1 7.7E-10 1.7E-14 105.1 13.4 98 160-274 42-139 (251)
79 PRK11783 rlmL 23S rRNA m(2)G24 99.1 1.2E-09 2.5E-14 118.7 16.2 113 160-276 538-657 (702)
80 TIGR00477 tehB tellurite resis 99.1 6.5E-10 1.4E-14 102.3 11.9 102 160-273 30-131 (195)
81 PLN02396 hexaprenyldihydroxybe 99.1 5E-10 1.1E-14 110.9 11.4 104 160-275 131-235 (322)
82 PRK00517 prmA ribosomal protei 99.1 1.6E-09 3.4E-14 103.5 14.3 131 159-322 118-249 (250)
83 PRK11873 arsM arsenite S-adeno 99.1 1.1E-09 2.3E-14 105.5 13.1 106 159-274 76-182 (272)
84 COG0220 Predicted S-adenosylme 99.1 1.4E-09 3E-14 102.6 13.4 114 162-279 50-168 (227)
85 PRK14968 putative methyltransf 99.1 1.6E-09 3.5E-14 97.5 12.9 112 159-277 22-150 (188)
86 PLN02490 MPBQ/MSBQ methyltrans 99.1 2.1E-09 4.6E-14 107.0 14.5 102 160-274 113-214 (340)
87 PRK01544 bifunctional N5-gluta 99.1 1.4E-09 3.1E-14 113.8 13.9 109 160-274 138-268 (506)
88 COG2227 UbiG 2-polyprenyl-3-me 99.1 7.8E-10 1.7E-14 103.9 10.4 104 160-277 59-163 (243)
89 PF05401 NodS: Nodulation prot 99.1 9.1E-10 2E-14 100.8 10.6 130 159-302 42-177 (201)
90 PF10672 Methyltrans_SAM: S-ad 99.1 1.6E-09 3.4E-14 105.4 12.6 130 159-291 122-254 (286)
91 TIGR00406 prmA ribosomal prote 99.1 2.7E-09 5.7E-14 104.1 13.9 119 160-297 159-277 (288)
92 PLN02336 phosphoethanolamine N 99.0 2.1E-09 4.7E-14 111.4 13.7 104 159-274 265-368 (475)
93 PRK11188 rrmJ 23S rRNA methylt 99.0 2.8E-09 6E-14 99.3 13.0 120 159-297 50-183 (209)
94 PRK08317 hypothetical protein; 99.0 2.8E-09 6E-14 99.0 12.2 105 159-274 18-123 (241)
95 PRK12335 tellurite resistance 99.0 1.5E-09 3.3E-14 105.6 10.7 102 160-273 120-221 (287)
96 KOG1271 Methyltransferases [Ge 99.0 2E-09 4.3E-14 97.0 10.3 112 159-277 66-183 (227)
97 COG2890 HemK Methylase of poly 99.0 8.4E-09 1.8E-13 100.3 15.6 149 114-275 68-238 (280)
98 PRK06922 hypothetical protein; 99.0 1.6E-09 3.6E-14 114.7 11.4 110 160-274 418-536 (677)
99 PRK00312 pcm protein-L-isoaspa 99.0 3.8E-09 8.3E-14 98.0 12.4 99 159-275 77-175 (212)
100 PHA03411 putative methyltransf 99.0 3.9E-09 8.4E-14 101.7 12.4 113 160-284 64-193 (279)
101 TIGR01177 conserved hypothetic 99.0 3.4E-09 7.4E-14 105.1 12.4 109 159-275 181-294 (329)
102 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 9.8E-09 2.1E-13 94.7 14.4 104 159-274 38-142 (223)
103 PRK00216 ubiE ubiquinone/menaq 99.0 3.7E-09 8E-14 98.5 11.6 106 159-273 50-156 (239)
104 PRK11705 cyclopropane fatty ac 99.0 4.6E-09 1E-13 106.4 12.8 101 159-275 166-267 (383)
105 PRK11088 rrmA 23S rRNA methylt 99.0 3E-09 6.5E-14 102.7 11.0 94 160-275 85-181 (272)
106 PRK10901 16S rRNA methyltransf 99.0 7.1E-09 1.5E-13 106.5 14.2 116 159-279 243-376 (427)
107 PF06325 PrmA: Ribosomal prote 99.0 1.1E-09 2.4E-14 107.0 7.8 135 159-322 160-294 (295)
108 smart00650 rADc Ribosomal RNA 99.0 5.1E-09 1.1E-13 93.9 11.6 101 159-276 12-114 (169)
109 cd02440 AdoMet_MTases S-adenos 99.0 7.1E-09 1.5E-13 81.6 11.1 103 163-274 1-103 (107)
110 PRK13943 protein-L-isoaspartat 99.0 9.3E-09 2E-13 101.8 14.1 111 146-275 69-180 (322)
111 TIGR00438 rrmJ cell division p 99.0 1.1E-08 2.4E-13 93.2 13.5 120 159-297 31-164 (188)
112 TIGR00095 RNA methyltransferas 99.0 9.3E-09 2E-13 94.4 12.8 107 160-275 49-159 (189)
113 PRK14902 16S rRNA methyltransf 98.9 1E-08 2.2E-13 105.8 14.0 116 159-279 249-383 (444)
114 KOG2352 Predicted spermine/spe 98.9 9.8E-10 2.1E-14 112.0 6.2 149 144-298 272-437 (482)
115 COG2264 PrmA Ribosomal protein 98.9 4.9E-09 1.1E-13 102.1 10.5 103 159-275 161-263 (300)
116 PF03602 Cons_hypoth95: Conser 98.9 3.3E-09 7.2E-14 96.9 8.8 108 160-275 42-153 (183)
117 PRK14904 16S rRNA methyltransf 98.9 3E-08 6.4E-13 102.4 16.7 114 159-279 249-381 (445)
118 TIGR00446 nop2p NOL1/NOP2/sun 98.9 2.1E-08 4.5E-13 96.6 14.4 131 159-297 70-219 (264)
119 TIGR02716 C20_methyl_CrtF C-20 98.9 6.6E-09 1.4E-13 101.9 11.2 106 159-274 148-253 (306)
120 TIGR03587 Pse_Me-ase pseudamin 98.9 5.9E-09 1.3E-13 96.8 10.1 93 159-265 42-134 (204)
121 PF08704 GCD14: tRNA methyltra 98.9 1E-08 2.2E-13 97.9 11.5 134 144-294 23-161 (247)
122 PLN02672 methionine S-methyltr 98.9 4.1E-08 8.9E-13 109.8 18.0 149 126-276 85-279 (1082)
123 PLN02336 phosphoethanolamine N 98.9 7E-09 1.5E-13 107.6 11.2 116 146-274 26-141 (475)
124 KOG1270 Methyltransferases [Co 98.9 2.6E-09 5.7E-14 101.2 7.0 121 141-275 66-195 (282)
125 PHA03412 putative methyltransf 98.9 1E-08 2.2E-13 96.9 10.7 101 160-273 49-160 (241)
126 PRK15068 tRNA mo(5)U34 methylt 98.9 2.1E-08 4.6E-13 99.4 13.5 118 143-274 108-225 (322)
127 KOG1540 Ubiquinone biosynthesi 98.9 2.1E-08 4.6E-13 94.7 12.6 106 160-273 100-212 (296)
128 TIGR02021 BchM-ChlM magnesium 98.9 2E-08 4.3E-13 93.6 12.1 115 146-273 42-156 (219)
129 TIGR03438 probable methyltrans 98.9 5.8E-08 1.3E-12 95.3 15.7 112 159-275 62-177 (301)
130 TIGR00563 rsmB ribosomal RNA s 98.9 2.4E-08 5.3E-13 102.5 13.4 118 159-279 237-372 (426)
131 PF03848 TehB: Tellurite resis 98.9 1.3E-08 2.9E-13 93.5 10.1 104 159-274 29-132 (192)
132 KOG2899 Predicted methyltransf 98.9 1.6E-08 3.4E-13 94.9 10.6 117 160-281 58-214 (288)
133 PRK14903 16S rRNA methyltransf 98.9 4E-08 8.7E-13 101.1 14.7 115 159-278 236-369 (431)
134 PRK05134 bifunctional 3-demeth 98.9 2.5E-08 5.5E-13 93.5 11.9 104 160-275 48-151 (233)
135 TIGR03840 TMPT_Se_Te thiopurin 98.8 1.8E-08 4E-13 94.2 10.8 110 159-273 33-150 (213)
136 PRK14901 16S rRNA methyltransf 98.8 4.3E-08 9.4E-13 100.9 14.5 115 159-277 251-386 (434)
137 TIGR00452 methyltransferase, p 98.8 3.6E-08 7.7E-13 97.4 13.0 114 144-274 108-224 (314)
138 PTZ00146 fibrillarin; Provisio 98.8 1E-07 2.2E-12 92.8 15.8 155 152-322 124-286 (293)
139 PF13489 Methyltransf_23: Meth 98.8 2.2E-08 4.8E-13 87.4 9.6 96 159-276 21-116 (161)
140 PRK01544 bifunctional N5-gluta 98.8 5.7E-08 1.2E-12 101.9 14.2 115 160-278 347-465 (506)
141 PRK13168 rumA 23S rRNA m(5)U19 98.8 5.2E-08 1.1E-12 100.5 13.3 116 143-275 283-400 (443)
142 TIGR01983 UbiG ubiquinone bios 98.8 4.4E-08 9.5E-13 91.1 11.5 106 159-275 44-149 (224)
143 PRK05785 hypothetical protein; 98.8 7.8E-08 1.7E-12 90.6 13.0 91 160-269 51-141 (226)
144 PRK13255 thiopurine S-methyltr 98.8 4.5E-08 9.8E-13 91.9 10.9 109 159-272 36-152 (218)
145 TIGR00479 rumA 23S rRNA (uraci 98.8 2.4E-07 5.3E-12 95.2 16.7 102 159-273 291-394 (431)
146 PRK06202 hypothetical protein; 98.8 4.3E-08 9.3E-13 92.2 10.2 102 159-272 59-164 (232)
147 KOG3010 Methyltransferase [Gen 98.7 2.4E-08 5.1E-13 93.7 7.8 108 158-277 31-139 (261)
148 PRK07580 Mg-protoporphyrin IX 98.7 9.5E-08 2.1E-12 89.1 12.0 113 148-272 51-163 (230)
149 PF05891 Methyltransf_PK: AdoM 98.7 1.9E-08 4.1E-13 93.5 6.8 133 132-273 24-159 (218)
150 PRK03522 rumB 23S rRNA methylu 98.7 1.5E-07 3.3E-12 92.9 13.4 102 160-275 173-274 (315)
151 COG0742 N6-adenine-specific me 98.7 1.4E-07 3.1E-12 86.0 11.9 110 160-276 43-155 (187)
152 PF07021 MetW: Methionine bios 98.7 6.1E-08 1.3E-12 88.6 9.4 73 159-243 12-84 (193)
153 COG2263 Predicted RNA methylas 98.7 1.3E-07 2.8E-12 86.0 11.4 93 160-265 45-137 (198)
154 PRK04338 N(2),N(2)-dimethylgua 98.7 1E-07 2.2E-12 96.6 12.0 101 161-275 58-158 (382)
155 KOG4300 Predicted methyltransf 98.7 6.2E-08 1.3E-12 89.0 8.7 102 162-273 78-180 (252)
156 TIGR02085 meth_trns_rumB 23S r 98.7 1.9E-07 4.1E-12 94.5 12.9 102 160-275 233-334 (374)
157 smart00138 MeTrc Methyltransfe 98.7 4.8E-08 1E-12 94.2 8.2 110 160-273 99-240 (264)
158 PLN02585 magnesium protoporphy 98.7 4.1E-07 8.9E-12 89.9 14.3 137 146-297 130-267 (315)
159 KOG1663 O-methyltransferase [S 98.7 2.9E-07 6.3E-12 86.0 12.3 121 138-273 56-181 (237)
160 COG3963 Phospholipid N-methylt 98.7 3.5E-07 7.6E-12 81.6 11.9 117 147-277 38-158 (194)
161 PF02475 Met_10: Met-10+ like- 98.6 1.8E-07 4E-12 86.6 10.3 128 126-272 71-199 (200)
162 PF00891 Methyltransf_2: O-met 98.6 1.8E-07 3.8E-12 88.5 8.9 98 159-274 99-198 (241)
163 PRK05031 tRNA (uracil-5-)-meth 98.6 6.5E-07 1.4E-11 90.2 13.3 99 161-274 207-319 (362)
164 TIGR00308 TRM1 tRNA(guanine-26 98.6 3.7E-07 8.1E-12 92.2 11.3 100 162-274 46-146 (374)
165 TIGR02143 trmA_only tRNA (urac 98.6 9.4E-07 2E-11 88.7 13.6 100 161-275 198-311 (353)
166 PTZ00338 dimethyladenosine tra 98.6 7E-07 1.5E-11 87.5 12.2 80 159-247 35-114 (294)
167 PRK11727 23S rRNA mA1618 methy 98.5 2.9E-06 6.3E-11 84.0 16.1 85 160-246 114-201 (321)
168 PRK13256 thiopurine S-methyltr 98.5 7.1E-07 1.5E-11 84.2 10.8 111 159-273 42-161 (226)
169 TIGR02081 metW methionine bios 98.5 7.4E-07 1.6E-11 81.6 10.1 101 146-267 4-104 (194)
170 PRK14896 ksgA 16S ribosomal RN 98.5 1.6E-06 3.5E-11 83.2 12.8 75 159-245 28-102 (258)
171 COG4976 Predicted methyltransf 98.5 4.5E-08 9.8E-13 91.2 1.5 101 161-277 126-227 (287)
172 KOG2904 Predicted methyltransf 98.5 1.5E-06 3.2E-11 83.1 11.7 115 157-275 145-285 (328)
173 PF10294 Methyltransf_16: Puta 98.5 7.5E-07 1.6E-11 80.5 9.1 108 159-273 44-154 (173)
174 PF05724 TPMT: Thiopurine S-me 98.4 6.3E-07 1.4E-11 84.2 8.4 107 159-270 36-150 (218)
175 PRK00274 ksgA 16S ribosomal RN 98.4 2E-06 4.2E-11 83.3 11.9 84 147-244 32-115 (272)
176 COG0030 KsgA Dimethyladenosine 98.4 2E-06 4.3E-11 82.5 11.4 97 161-274 31-130 (259)
177 PF05185 PRMT5: PRMT5 arginine 98.4 9.6E-07 2.1E-11 91.2 9.4 111 161-279 187-301 (448)
178 COG1041 Predicted DNA modifica 98.4 4.7E-06 1E-10 82.6 13.8 119 147-276 186-311 (347)
179 COG2520 Predicted methyltransf 98.4 2.6E-05 5.6E-10 77.6 18.6 175 126-319 158-335 (341)
180 KOG1661 Protein-L-isoaspartate 98.4 1E-06 2.3E-11 81.2 8.1 117 145-274 68-192 (237)
181 PF09445 Methyltransf_15: RNA 98.4 8.9E-07 1.9E-11 79.4 7.3 80 162-248 1-81 (163)
182 TIGR00755 ksgA dimethyladenosi 98.3 4.3E-06 9.3E-11 79.9 11.5 84 146-244 18-104 (253)
183 PRK11933 yebU rRNA (cytosine-C 98.3 1.3E-05 2.8E-10 83.3 15.7 114 159-277 112-244 (470)
184 PF01170 UPF0020: Putative RNA 98.3 2.2E-06 4.8E-11 77.9 8.4 111 159-274 27-150 (179)
185 PF08003 Methyltransf_9: Prote 98.3 9.1E-06 2E-10 79.3 11.9 115 143-275 101-219 (315)
186 PF05219 DREV: DREV methyltran 98.3 7.4E-06 1.6E-10 78.2 10.9 93 160-274 94-187 (265)
187 PF03291 Pox_MCEL: mRNA cappin 98.2 3.2E-06 6.9E-11 84.2 8.4 114 160-274 62-185 (331)
188 KOG1541 Predicted protein carb 98.2 5E-06 1.1E-10 77.4 9.0 122 161-298 51-182 (270)
189 KOG1709 Guanidinoacetate methy 98.2 1.3E-05 2.8E-10 74.3 10.4 124 134-273 81-204 (271)
190 KOG3191 Predicted N6-DNA-methy 98.2 3.3E-05 7.2E-10 70.0 12.2 123 160-294 43-183 (209)
191 TIGR02987 met_A_Alw26 type II 98.1 1.4E-05 2.9E-10 84.4 10.2 132 160-295 31-216 (524)
192 PRK00050 16S rRNA m(4)C1402 me 98.1 1.9E-05 4.1E-10 77.4 10.4 87 147-242 9-98 (296)
193 PF02384 N6_Mtase: N-6 DNA Met 98.1 8.8E-06 1.9E-10 79.8 7.6 136 159-296 45-205 (311)
194 PF13578 Methyltransf_24: Meth 98.1 2E-06 4.4E-11 70.8 2.5 100 165-273 1-103 (106)
195 PF01728 FtsJ: FtsJ-like methy 98.1 3.5E-05 7.5E-10 69.6 10.6 152 146-320 9-178 (181)
196 TIGR00478 tly hemolysin TlyA f 98.0 5E-05 1.1E-09 71.8 11.8 56 141-199 58-113 (228)
197 KOG1975 mRNA cap methyltransfe 98.0 1.9E-05 4.2E-10 77.2 8.9 116 159-275 116-237 (389)
198 COG2265 TrmA SAM-dependent met 98.0 9.8E-05 2.1E-09 76.1 14.5 114 145-274 281-395 (432)
199 KOG2940 Predicted methyltransf 98.0 9.7E-06 2.1E-10 75.9 6.3 99 160-273 72-172 (325)
200 PF02527 GidB: rRNA small subu 98.0 7E-05 1.5E-09 68.6 11.6 112 148-275 37-148 (184)
201 KOG0820 Ribosomal RNA adenine 98.0 2.4E-05 5.3E-10 74.9 8.5 79 159-246 57-135 (315)
202 PLN02232 ubiquinone biosynthes 98.0 2.6E-05 5.7E-10 69.4 8.2 80 188-274 1-80 (160)
203 COG4076 Predicted RNA methylas 98.0 1.7E-05 3.8E-10 72.1 6.6 113 144-274 22-134 (252)
204 PRK11783 rlmL 23S rRNA m(2)G24 97.9 5.2E-05 1.1E-09 82.7 11.3 113 160-275 190-347 (702)
205 COG0144 Sun tRNA and rRNA cyto 97.9 0.00033 7.1E-09 70.6 15.2 116 160-279 156-292 (355)
206 KOG1499 Protein arginine N-met 97.8 4.6E-05 1E-09 75.4 7.8 102 160-273 60-165 (346)
207 KOG3420 Predicted RNA methylas 97.8 3.9E-05 8.4E-10 67.2 6.4 97 160-266 48-144 (185)
208 KOG2361 Predicted methyltransf 97.8 3.6E-05 7.7E-10 72.6 6.3 107 160-274 71-182 (264)
209 PF03059 NAS: Nicotianamine sy 97.8 0.0002 4.4E-09 69.4 11.6 108 160-275 120-230 (276)
210 PRK10742 putative methyltransf 97.8 0.0002 4.3E-09 68.3 11.1 83 163-248 91-178 (250)
211 PF00398 RrnaAD: Ribosomal RNA 97.8 7.1E-05 1.5E-09 72.0 7.8 113 145-275 18-134 (262)
212 PF05430 Methyltransf_30: S-ad 97.8 0.00014 3.1E-09 62.4 8.7 93 214-322 31-123 (124)
213 PF05958 tRNA_U5-meth_tr: tRNA 97.7 6.5E-05 1.4E-09 75.5 7.4 90 145-244 185-288 (352)
214 PRK01747 mnmC bifunctional tRN 97.7 0.00016 3.5E-09 78.4 10.8 112 162-275 59-206 (662)
215 PF12147 Methyltransf_20: Puta 97.7 0.00053 1.1E-08 66.6 12.2 116 159-280 134-253 (311)
216 PF01861 DUF43: Protein of unk 97.7 0.00047 1E-08 65.3 11.5 100 160-270 44-143 (243)
217 COG0293 FtsJ 23S rRNA methylas 97.6 0.00065 1.4E-08 63.1 11.6 130 147-297 34-177 (205)
218 COG0357 GidB Predicted S-adeno 97.6 0.00067 1.5E-08 63.6 11.5 98 161-273 68-166 (215)
219 KOG2915 tRNA(1-methyladenosine 97.6 0.0006 1.3E-08 65.5 10.9 101 159-273 104-208 (314)
220 PF06080 DUF938: Protein of un 97.6 0.00025 5.3E-09 65.8 7.9 110 163-275 28-141 (204)
221 PF02005 TRM: N2,N2-dimethylgu 97.5 0.00029 6.2E-09 71.5 8.3 104 161-275 50-154 (377)
222 PRK04148 hypothetical protein; 97.5 0.00028 6.1E-09 61.3 7.0 68 159-240 15-83 (134)
223 PF08123 DOT1: Histone methyla 97.4 0.00029 6.3E-09 65.6 6.7 118 147-273 32-156 (205)
224 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.0011 2.4E-08 64.6 11.0 132 160-297 85-239 (283)
225 KOG1500 Protein arginine N-met 97.4 0.00074 1.6E-08 66.6 8.9 100 160-272 177-279 (517)
226 PF01739 CheR: CheR methyltran 97.4 0.00077 1.7E-08 62.4 8.6 110 160-273 31-173 (196)
227 KOG2730 Methylase [General fun 97.4 0.00029 6.4E-09 65.7 5.6 82 160-248 94-177 (263)
228 KOG3178 Hydroxyindole-O-methyl 97.3 0.00051 1.1E-08 68.2 7.1 96 161-273 178-273 (342)
229 PF01269 Fibrillarin: Fibrilla 97.3 0.0027 5.9E-08 59.6 11.4 123 159-297 72-206 (229)
230 TIGR00006 S-adenosyl-methyltra 97.3 0.0021 4.5E-08 63.4 10.6 88 147-242 10-100 (305)
231 KOG1562 Spermidine synthase [A 97.2 0.00019 4.1E-09 69.6 3.0 166 93-275 113-293 (337)
232 COG1867 TRM1 N2,N2-dimethylgua 97.2 0.002 4.3E-08 64.4 10.1 102 161-275 53-154 (380)
233 PF04816 DUF633: Family of unk 97.2 0.0027 6E-08 59.1 10.2 101 164-275 1-101 (205)
234 KOG0822 Protein kinase inhibit 97.2 0.0023 5E-08 66.4 10.3 110 161-279 368-482 (649)
235 PF07942 N2227: N2227-like pro 97.2 0.0014 3.1E-08 63.4 8.4 110 160-275 56-202 (270)
236 COG0116 Predicted N6-adenine-s 97.2 0.002 4.4E-08 64.9 9.7 109 161-275 192-344 (381)
237 TIGR03439 methyl_EasF probable 97.1 0.0068 1.5E-07 60.2 12.9 112 159-275 75-197 (319)
238 PRK11760 putative 23S rRNA C24 97.1 0.0013 2.8E-08 65.5 7.5 87 159-268 210-296 (357)
239 PF04989 CmcI: Cephalosporin h 97.1 0.0031 6.7E-08 58.7 9.2 117 141-274 19-146 (206)
240 PF09243 Rsm22: Mitochondrial 97.0 0.004 8.7E-08 60.4 9.6 103 160-273 33-137 (274)
241 COG0500 SmtA SAM-dependent met 96.9 0.013 2.9E-07 47.3 10.8 102 164-275 52-155 (257)
242 PRK10611 chemotaxis methyltran 96.9 0.0033 7.2E-08 61.5 7.7 111 160-273 115-260 (287)
243 PF01795 Methyltransf_5: MraW 96.8 0.0037 8E-08 61.7 7.8 88 147-242 10-101 (310)
244 TIGR01444 fkbM_fam methyltrans 96.8 0.0036 7.8E-08 53.8 6.7 56 164-223 2-57 (143)
245 COG2384 Predicted SAM-dependen 96.7 0.014 3.1E-07 54.6 10.0 106 159-275 15-120 (226)
246 COG0275 Predicted S-adenosylme 96.7 0.012 2.7E-07 57.5 10.0 89 146-242 12-104 (314)
247 PF05971 Methyltransf_10: Prot 96.7 0.013 2.9E-07 57.5 10.3 100 143-246 82-189 (299)
248 PF04672 Methyltransf_19: S-ad 96.6 0.012 2.7E-07 56.8 9.7 108 160-275 68-190 (267)
249 PF04445 SAM_MT: Putative SAM- 96.6 0.0027 5.9E-08 60.2 4.8 82 162-246 77-163 (234)
250 KOG3115 Methyltransferase-like 96.6 0.0075 1.6E-07 55.8 7.2 113 162-275 62-183 (249)
251 PRK11524 putative methyltransf 96.5 0.011 2.5E-07 57.5 8.8 64 212-275 5-80 (284)
252 COG1352 CheR Methylase of chem 96.4 0.013 2.9E-07 56.7 8.1 110 160-273 96-239 (268)
253 KOG4589 Cell division protein 96.3 0.093 2E-06 48.2 12.8 123 159-301 68-205 (232)
254 PF05148 Methyltransf_8: Hypot 96.3 0.0017 3.7E-08 60.4 1.8 86 159-273 71-156 (219)
255 PF03141 Methyltransf_29: Puta 96.3 0.012 2.6E-07 61.1 7.9 125 134-276 90-220 (506)
256 PF07091 FmrO: Ribosomal RNA m 96.3 0.01 2.2E-07 56.7 6.8 75 159-241 104-178 (251)
257 PF13679 Methyltransf_32: Meth 96.2 0.015 3.2E-07 50.6 7.0 76 159-239 24-104 (141)
258 PF06962 rRNA_methylase: Putat 96.2 0.068 1.5E-06 46.9 10.8 87 186-275 1-92 (140)
259 COG1189 Predicted rRNA methyla 96.1 0.044 9.5E-07 52.0 9.9 107 147-272 68-175 (245)
260 COG1063 Tdh Threonine dehydrog 96.1 0.053 1.1E-06 54.4 11.2 99 161-275 169-269 (350)
261 cd00315 Cyt_C5_DNA_methylase C 96.1 0.18 4E-06 48.9 14.5 148 163-324 2-165 (275)
262 PRK13699 putative methylase; P 96.1 0.02 4.4E-07 54.1 7.5 58 216-273 2-70 (227)
263 KOG3987 Uncharacterized conser 96.0 0.0024 5.1E-08 59.3 0.9 93 159-273 111-205 (288)
264 KOG1253 tRNA methyltransferase 96.0 0.008 1.7E-07 62.1 4.8 106 159-275 108-216 (525)
265 COG3897 Predicted methyltransf 95.9 0.013 2.7E-07 54.1 5.1 102 160-279 79-181 (218)
266 COG1889 NOP1 Fibrillarin-like 95.9 0.1 2.2E-06 48.5 10.8 126 158-295 74-205 (231)
267 PRK09424 pntA NAD(P) transhydr 95.8 0.072 1.6E-06 56.2 11.0 110 159-274 163-284 (509)
268 KOG2352 Predicted spermine/spe 95.8 0.055 1.2E-06 56.1 9.7 104 163-274 51-160 (482)
269 COG1568 Predicted methyltransf 95.8 0.039 8.4E-07 53.5 8.0 125 160-297 152-280 (354)
270 COG1064 AdhP Zn-dependent alco 95.7 0.076 1.6E-06 53.1 10.0 94 159-275 165-259 (339)
271 KOG3045 Predicted RNA methylas 95.7 0.04 8.6E-07 53.0 7.6 84 159-273 179-262 (325)
272 KOG3201 Uncharacterized conser 95.7 0.016 3.4E-07 52.0 4.6 107 161-273 30-138 (201)
273 KOG2187 tRNA uracil-5-methyltr 95.5 0.033 7.2E-07 58.0 6.9 101 159-271 382-486 (534)
274 KOG1122 tRNA and rRNA cytosine 95.5 0.071 1.5E-06 54.4 9.0 133 159-297 239-391 (460)
275 KOG2198 tRNA cytosine-5-methyl 95.5 0.12 2.5E-06 52.1 10.4 147 147-297 140-320 (375)
276 PF11599 AviRa: RRNA methyltra 95.1 0.064 1.4E-06 50.2 6.9 126 145-273 39-212 (246)
277 PRK09880 L-idonate 5-dehydroge 95.1 0.16 3.4E-06 50.3 10.3 97 160-275 169-266 (343)
278 PF01210 NAD_Gly3P_dh_N: NAD-d 95.1 0.2 4.2E-06 44.3 9.8 145 163-323 1-153 (157)
279 KOG0024 Sorbitol dehydrogenase 95.0 0.16 3.4E-06 50.4 9.6 102 159-273 168-271 (354)
280 KOG1269 SAM-dependent methyltr 95.0 0.036 7.9E-07 56.0 5.4 103 160-273 110-213 (364)
281 PF14314 Methyltrans_Mon: Viru 94.8 0.19 4.1E-06 54.4 10.5 162 160-324 322-502 (675)
282 COG5459 Predicted rRNA methyla 94.7 0.046 1E-06 54.6 5.1 110 160-274 113-224 (484)
283 PTZ00357 methyltransferase; Pr 94.7 0.18 3.9E-06 54.4 9.7 106 163-270 703-830 (1072)
284 TIGR00518 alaDH alanine dehydr 94.7 0.32 7E-06 49.3 11.2 99 160-273 166-265 (370)
285 cd08283 FDH_like_1 Glutathione 94.6 0.29 6.4E-06 49.3 10.7 110 159-275 183-306 (386)
286 PF04378 RsmJ: Ribosomal RNA s 94.5 0.96 2.1E-05 43.4 13.4 118 165-296 62-183 (245)
287 KOG1596 Fibrillarin and relate 94.4 0.21 4.5E-06 47.7 8.4 101 159-275 155-261 (317)
288 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.4 0.019 4.1E-07 55.3 1.6 112 160-274 56-198 (256)
289 COG0286 HsdM Type I restrictio 94.3 0.36 7.9E-06 50.8 11.0 121 148-273 176-324 (489)
290 KOG1099 SAM-dependent methyltr 94.3 0.42 9.1E-06 45.3 10.1 147 160-329 41-211 (294)
291 cd08281 liver_ADH_like1 Zinc-d 94.3 0.29 6.3E-06 48.9 10.0 100 159-275 190-290 (371)
292 PF00107 ADH_zinc_N: Zinc-bind 94.2 0.12 2.7E-06 43.2 6.1 88 170-275 1-89 (130)
293 PRK10309 galactitol-1-phosphat 94.1 0.44 9.6E-06 46.9 10.7 101 159-275 159-260 (347)
294 KOG4058 Uncharacterized conser 93.9 0.068 1.5E-06 47.3 3.8 76 147-226 58-134 (199)
295 TIGR03451 mycoS_dep_FDH mycoth 93.9 0.46 1E-05 47.2 10.4 100 159-275 175-276 (358)
296 cd08293 PTGR2 Prostaglandin re 93.9 0.48 1E-05 46.4 10.4 96 162-274 156-253 (345)
297 PRK05562 precorrin-2 dehydroge 93.8 0.38 8.2E-06 45.5 9.1 107 144-277 8-118 (223)
298 KOG1501 Arginine N-methyltrans 93.8 0.098 2.1E-06 53.6 5.3 101 163-270 69-169 (636)
299 cd05188 MDR Medium chain reduc 93.6 0.66 1.4E-05 43.0 10.4 99 159-275 133-232 (271)
300 TIGR03366 HpnZ_proposed putati 93.4 0.91 2E-05 43.5 11.3 97 160-275 120-218 (280)
301 PF10354 DUF2431: Domain of un 93.3 0.19 4.1E-06 45.2 5.9 107 165-273 1-123 (166)
302 KOG2671 Putative RNA methylase 93.1 0.083 1.8E-06 52.6 3.5 112 159-275 207-354 (421)
303 cd08239 THR_DH_like L-threonin 93.1 1 2.2E-05 44.1 11.3 99 159-275 162-262 (339)
304 PF00145 DNA_methylase: C-5 cy 93.0 2.1 4.5E-05 41.5 13.1 146 163-324 2-164 (335)
305 PF11968 DUF3321: Putative met 92.8 0.22 4.8E-06 46.7 5.7 87 161-270 52-139 (219)
306 KOG0821 Predicted ribosomal RN 92.8 0.096 2.1E-06 49.3 3.3 60 161-226 51-110 (326)
307 cd08254 hydroxyacyl_CoA_DH 6-h 92.8 1.3 2.8E-05 42.9 11.4 99 159-275 164-263 (338)
308 TIGR00561 pntA NAD(P) transhyd 92.8 0.84 1.8E-05 48.3 10.6 106 160-272 163-281 (511)
309 PF05711 TylF: Macrocin-O-meth 92.7 0.49 1.1E-05 45.4 8.0 119 147-275 63-212 (248)
310 PF02254 TrkA_N: TrkA-N domain 92.6 0.73 1.6E-05 37.9 8.1 94 164-277 1-98 (116)
311 PF01555 N6_N4_Mtase: DNA meth 92.5 0.18 3.8E-06 46.1 4.6 53 148-202 179-231 (231)
312 COG0604 Qor NADPH:quinone redu 92.4 0.76 1.6E-05 45.7 9.4 98 159-275 141-241 (326)
313 COG2961 ComJ Protein involved 92.2 2.2 4.8E-05 40.9 11.5 117 165-295 93-213 (279)
314 PLN02740 Alcohol dehydrogenase 92.1 1.2 2.7E-05 44.7 10.5 100 159-275 197-300 (381)
315 cd08285 NADP_ADH NADP(H)-depen 92.0 1.5 3.3E-05 43.2 10.8 100 158-274 164-265 (351)
316 PRK09260 3-hydroxybutyryl-CoA 91.9 0.52 1.1E-05 45.7 7.4 102 162-276 2-118 (288)
317 KOG2078 tRNA modification enzy 91.8 0.61 1.3E-05 47.8 7.7 102 119-229 212-314 (495)
318 cd05278 FDH_like Formaldehyde 91.7 1.5 3.3E-05 42.7 10.5 99 159-274 166-266 (347)
319 COG4121 Uncharacterized conser 91.7 0.24 5.1E-06 47.6 4.5 111 162-274 60-207 (252)
320 PRK11524 putative methyltransf 91.7 0.33 7.1E-06 47.3 5.6 57 147-205 195-251 (284)
321 PLN02827 Alcohol dehydrogenase 91.6 1.3 2.8E-05 44.6 10.1 100 159-275 192-295 (378)
322 TIGR03201 dearomat_had 6-hydro 91.5 1.6 3.5E-05 43.1 10.5 100 159-275 165-272 (349)
323 cd08294 leukotriene_B4_DH_like 91.5 1.6 3.5E-05 42.1 10.3 97 159-274 142-240 (329)
324 PF03721 UDPG_MGDP_dh_N: UDP-g 91.4 2.8 6.1E-05 38.2 11.1 137 163-310 2-153 (185)
325 cd05285 sorbitol_DH Sorbitol d 91.3 1.9 4.2E-05 42.2 10.8 100 159-275 161-265 (343)
326 PHA01634 hypothetical protein 91.3 0.43 9.3E-06 41.3 5.2 75 160-244 28-102 (156)
327 TIGR01202 bchC 2-desacetyl-2-h 91.1 1.2 2.6E-05 43.4 9.0 87 160-275 144-231 (308)
328 PF07279 DUF1442: Protein of u 91.1 4 8.8E-05 38.3 11.8 90 147-243 30-124 (218)
329 COG0686 Ald Alanine dehydrogen 91.0 1.7 3.8E-05 43.1 9.8 98 160-272 167-265 (371)
330 TIGR02825 B4_12hDH leukotriene 91.0 2.2 4.8E-05 41.5 10.8 98 159-275 137-237 (325)
331 cd08230 glucose_DH Glucose deh 91.0 2.1 4.6E-05 42.4 10.8 94 160-275 172-269 (355)
332 PF01262 AlaDh_PNT_C: Alanine 90.9 0.38 8.1E-06 43.0 4.8 104 160-272 19-136 (168)
333 COG4798 Predicted methyltransf 90.9 0.41 8.9E-06 44.3 5.0 114 157-274 45-165 (238)
334 COG0270 Dcm Site-specific DNA 90.8 3.3 7.1E-05 41.2 11.9 123 161-295 3-138 (328)
335 PLN03154 putative allyl alcoho 90.8 2.1 4.5E-05 42.6 10.5 98 159-274 157-257 (348)
336 cd08238 sorbose_phosphate_red 90.7 2.7 5.8E-05 42.8 11.5 103 160-273 175-286 (410)
337 PF12692 Methyltransf_17: S-ad 90.7 0.25 5.4E-06 43.7 3.3 103 160-273 28-132 (160)
338 PF06460 NSP13: Coronavirus NS 90.6 2.4 5.1E-05 41.0 10.0 150 145-322 44-208 (299)
339 PF02737 3HCDH_N: 3-hydroxyacy 90.6 1.2 2.5E-05 40.5 7.8 101 163-277 1-116 (180)
340 cd08233 butanediol_DH_like (2R 90.5 2.1 4.6E-05 42.1 10.3 100 159-275 171-272 (351)
341 KOG2798 Putative trehalase [Ca 90.5 0.91 2E-05 45.0 7.2 109 161-275 151-296 (369)
342 cd08232 idonate-5-DH L-idonate 90.5 1.9 4.1E-05 42.1 9.8 96 160-274 165-261 (339)
343 TIGR00497 hsdM type I restrict 90.2 5.8 0.00013 41.8 13.7 157 162-323 219-404 (501)
344 PRK10637 cysG siroheme synthas 90.2 1.2 2.6E-05 46.4 8.5 99 151-276 2-104 (457)
345 TIGR01470 cysG_Nterm siroheme 90.1 2.6 5.7E-05 39.1 9.9 92 159-277 7-102 (205)
346 PLN02353 probable UDP-glucose 89.9 6.8 0.00015 41.1 13.8 138 163-310 3-158 (473)
347 PRK03562 glutathione-regulated 89.8 2 4.4E-05 46.6 10.1 96 161-275 400-498 (621)
348 TIGR00675 dcm DNA-methyltransf 89.8 7.2 0.00016 38.6 13.2 68 164-243 1-68 (315)
349 cd08295 double_bond_reductase_ 89.7 3.4 7.3E-05 40.5 10.9 98 159-274 150-250 (338)
350 cd08300 alcohol_DH_class_III c 89.3 3.7 8E-05 41.0 10.9 99 159-274 185-287 (368)
351 cd08237 ribitol-5-phosphate_DH 89.2 3 6.6E-05 41.2 10.2 93 159-275 162-256 (341)
352 PRK05808 3-hydroxybutyryl-CoA 89.2 1.1 2.4E-05 43.2 6.9 102 162-277 4-120 (282)
353 PRK15116 sulfur acceptor prote 89.1 1.5 3.2E-05 42.7 7.6 35 160-194 29-64 (268)
354 PRK06035 3-hydroxyacyl-CoA deh 89.1 1.9 4.1E-05 41.9 8.5 100 162-275 4-121 (291)
355 cd08278 benzyl_alcohol_DH Benz 89.1 2.9 6.2E-05 41.7 10.0 100 159-275 185-285 (365)
356 PRK06719 precorrin-2 dehydroge 88.8 1.5 3.2E-05 39.0 6.9 78 149-244 1-80 (157)
357 TIGR02818 adh_III_F_hyde S-(hy 88.6 3.8 8.2E-05 40.9 10.6 100 159-275 184-287 (368)
358 KOG2793 Putative N2,N2-dimethy 88.6 3.1 6.6E-05 40.0 9.2 105 160-271 86-195 (248)
359 PRK00066 ldh L-lactate dehydro 88.6 6.2 0.00013 39.1 11.8 109 159-275 4-122 (315)
360 COG0569 TrkA K+ transport syst 88.5 2.5 5.5E-05 39.7 8.6 72 162-244 1-76 (225)
361 PRK08223 hypothetical protein; 88.4 1.7 3.7E-05 42.7 7.5 35 160-195 26-62 (287)
362 TIGR02356 adenyl_thiF thiazole 88.2 1.6 3.4E-05 40.3 6.9 33 160-193 20-54 (202)
363 PRK07502 cyclohexadienyl dehyd 88.2 3.4 7.3E-05 40.4 9.7 91 161-273 6-98 (307)
364 cd08234 threonine_DH_like L-th 88.2 3.6 7.8E-05 39.9 9.8 96 159-274 158-256 (334)
365 PRK11064 wecC UDP-N-acetyl-D-m 88.2 5.1 0.00011 41.2 11.3 104 162-278 4-122 (415)
366 cd08277 liver_alcohol_DH_like 88.2 4.7 0.0001 40.1 10.8 100 159-275 183-286 (365)
367 cd00755 YgdL_like Family of ac 88.1 1.3 2.8E-05 42.0 6.4 34 161-194 11-45 (231)
368 PRK08293 3-hydroxybutyryl-CoA 88.0 4 8.6E-05 39.6 9.9 102 162-276 4-121 (287)
369 PRK10669 putative cation:proto 88.0 2.8 6E-05 44.7 9.6 95 162-276 418-516 (558)
370 PRK12475 thiamine/molybdopteri 87.9 1.8 3.8E-05 43.4 7.5 34 160-194 23-58 (338)
371 PRK03659 glutathione-regulated 87.9 3.2 6.9E-05 44.8 10.0 96 162-277 401-500 (601)
372 PF10237 N6-adenineMlase: Prob 87.9 6.9 0.00015 35.1 10.5 98 159-273 24-121 (162)
373 cd05279 Zn_ADH1 Liver alcohol 87.8 5.3 0.00011 39.8 11.0 99 159-274 182-284 (365)
374 PRK05597 molybdopterin biosynt 87.7 2.3 5.1E-05 42.8 8.3 35 160-194 27-62 (355)
375 KOG1331 Predicted methyltransf 87.7 0.46 1E-05 46.3 3.0 99 160-275 45-143 (293)
376 cd08301 alcohol_DH_plants Plan 87.5 5.1 0.00011 39.8 10.7 100 159-275 186-289 (369)
377 PRK07066 3-hydroxybutyryl-CoA 87.4 3.4 7.3E-05 41.2 9.1 103 161-276 7-120 (321)
378 PRK07530 3-hydroxybutyryl-CoA 87.4 2.6 5.7E-05 40.9 8.3 102 162-277 5-121 (292)
379 PRK13699 putative methylase; P 87.3 1.2 2.6E-05 42.1 5.6 48 158-207 161-208 (227)
380 PRK07819 3-hydroxybutyryl-CoA 87.3 2.5 5.3E-05 41.2 8.0 102 162-277 6-123 (286)
381 COG1179 Dinucleotide-utilizing 87.1 1.5 3.3E-05 41.9 6.1 86 160-246 29-132 (263)
382 cd08236 sugar_DH NAD(P)-depend 87.1 8.1 0.00018 37.6 11.6 99 159-274 158-257 (343)
383 TIGR02822 adh_fam_2 zinc-bindi 87.0 6.7 0.00015 38.5 11.0 90 159-275 164-254 (329)
384 TIGR00936 ahcY adenosylhomocys 86.9 19 0.00041 37.1 14.4 87 160-275 194-282 (406)
385 PF02636 Methyltransf_28: Puta 86.9 0.64 1.4E-05 44.3 3.6 46 161-206 19-72 (252)
386 cd08286 FDH_like_ADH2 formalde 86.8 7.3 0.00016 38.1 11.2 99 159-274 165-265 (345)
387 PLN02545 3-hydroxybutyryl-CoA 86.7 3.3 7.2E-05 40.2 8.6 103 161-277 4-121 (295)
388 PRK08618 ornithine cyclodeamin 86.6 21 0.00046 35.4 14.3 132 116-272 85-218 (325)
389 PRK06130 3-hydroxybutyryl-CoA 86.4 4.3 9.3E-05 39.7 9.2 101 162-275 5-115 (311)
390 cd01492 Aos1_SUMO Ubiquitin ac 86.2 2.5 5.4E-05 38.9 7.0 32 161-194 21-55 (197)
391 PF11899 DUF3419: Protein of u 86.2 1.3 2.9E-05 45.1 5.6 59 214-275 275-334 (380)
392 PRK06141 ornithine cyclodeamin 86.1 36 0.00077 33.6 15.6 132 116-272 83-216 (314)
393 PF01488 Shikimate_DH: Shikima 86.0 7.4 0.00016 33.4 9.5 72 160-244 11-85 (135)
394 PF01408 GFO_IDH_MocA: Oxidore 85.8 8.4 0.00018 31.5 9.5 107 163-295 2-112 (120)
395 cd01491 Ube1_repeat1 Ubiquitin 85.6 4.1 8.9E-05 40.0 8.5 32 161-194 19-53 (286)
396 PF13241 NAD_binding_7: Putati 85.5 9.2 0.0002 31.2 9.4 89 160-278 6-94 (103)
397 PRK09496 trkA potassium transp 85.5 4.5 9.7E-05 41.5 9.2 74 160-244 230-307 (453)
398 cd00401 AdoHcyase S-adenosyl-L 85.4 6.1 0.00013 40.8 10.0 87 160-275 201-289 (413)
399 cd01487 E1_ThiF_like E1_ThiF_l 85.4 2.3 5E-05 38.3 6.3 31 163-194 1-33 (174)
400 cd01065 NAD_bind_Shikimate_DH 85.3 20 0.00044 30.6 12.1 73 159-246 17-93 (155)
401 PRK08644 thiamine biosynthesis 85.3 2.5 5.4E-05 39.5 6.6 33 160-193 27-61 (212)
402 cd08261 Zn_ADH7 Alcohol dehydr 85.3 7.1 0.00015 38.0 10.2 98 159-274 158-257 (337)
403 cd05291 HicDH_like L-2-hydroxy 85.2 10 0.00022 37.3 11.2 107 162-275 1-117 (306)
404 PRK08268 3-hydroxy-acyl-CoA de 85.2 4.8 0.0001 42.6 9.4 105 159-277 5-124 (507)
405 PF02719 Polysacc_synt_2: Poly 85.1 2.7 5.9E-05 41.3 6.9 77 164-244 1-87 (293)
406 COG1062 AdhC Zn-dependent alco 85.0 8.3 0.00018 38.8 10.3 101 159-275 184-285 (366)
407 PF02826 2-Hacid_dh_C: D-isome 84.9 19 0.00041 32.3 12.0 90 160-275 35-127 (178)
408 cd05288 PGDH Prostaglandin deh 84.9 8.2 0.00018 37.2 10.3 98 159-274 144-243 (329)
409 PF11312 DUF3115: Protein of u 84.9 1.4 3E-05 43.6 4.8 107 162-273 88-240 (315)
410 COG0287 TyrA Prephenate dehydr 84.8 9.4 0.0002 37.3 10.6 109 162-298 4-114 (279)
411 COG1086 Predicted nucleoside-d 84.8 4.7 0.0001 43.0 8.9 81 160-244 249-335 (588)
412 COG4017 Uncharacterized protei 84.7 1.4 3E-05 40.8 4.4 66 158-244 42-108 (254)
413 PRK07340 ornithine cyclodeamin 84.3 17 0.00036 35.8 12.3 114 116-244 83-198 (304)
414 PRK07688 thiamine/molybdopteri 84.3 2.7 5.8E-05 42.2 6.7 34 160-194 23-58 (339)
415 cd05281 TDH Threonine dehydrog 84.3 11 0.00024 36.8 11.1 100 159-275 162-262 (341)
416 cd08255 2-desacetyl-2-hydroxye 84.3 9.4 0.0002 35.9 10.2 94 159-275 96-190 (277)
417 PF00106 adh_short: short chai 84.1 13 0.00028 32.0 10.2 77 162-244 1-90 (167)
418 TIGR02819 fdhA_non_GSH formald 83.9 11 0.00024 38.3 11.1 107 159-275 184-299 (393)
419 COG1748 LYS9 Saccharopine dehy 83.9 13 0.00028 38.1 11.4 139 162-313 2-161 (389)
420 TIGR00692 tdh L-threonine 3-de 83.8 11 0.00024 36.8 10.9 100 159-275 160-261 (340)
421 PRK06949 short chain dehydroge 83.8 19 0.00041 33.3 11.9 78 160-243 8-95 (258)
422 PRK05476 S-adenosyl-L-homocyst 83.6 18 0.00039 37.5 12.5 87 160-275 211-299 (425)
423 cd05292 LDH_2 A subgroup of L- 83.4 15 0.00032 36.2 11.5 103 163-274 2-115 (308)
424 PRK10083 putative oxidoreducta 82.9 11 0.00025 36.5 10.5 99 159-275 159-259 (339)
425 COG1565 Uncharacterized conser 82.9 2.9 6.4E-05 42.2 6.2 50 158-207 75-132 (370)
426 PTZ00082 L-lactate dehydrogena 82.7 19 0.00042 35.7 12.0 77 161-245 6-85 (321)
427 cd05290 LDH_3 A subgroup of L- 82.5 14 0.0003 36.6 10.8 105 163-274 1-118 (307)
428 PRK07523 gluconate 5-dehydroge 82.4 17 0.00037 33.8 11.1 79 160-244 9-97 (255)
429 cd05293 LDH_1 A subgroup of L- 82.3 23 0.00049 35.1 12.3 106 161-275 3-120 (312)
430 PRK09422 ethanol-active dehydr 82.0 17 0.00037 35.2 11.3 98 159-274 161-260 (338)
431 PTZ00117 malate dehydrogenase; 82.0 15 0.00032 36.5 10.8 105 160-273 4-120 (319)
432 PF06859 Bin3: Bicoid-interact 81.8 0.23 5E-06 41.7 -1.7 46 234-280 1-48 (110)
433 cd08243 quinone_oxidoreductase 81.8 18 0.0004 34.3 11.2 95 159-274 141-237 (320)
434 cd00757 ThiF_MoeB_HesA_family 81.5 4.4 9.5E-05 38.0 6.7 35 160-194 20-55 (228)
435 PRK05396 tdh L-threonine 3-deh 81.5 13 0.00028 36.3 10.3 99 160-275 163-263 (341)
436 PRK07102 short chain dehydroge 81.4 14 0.00031 34.0 10.0 75 162-242 2-84 (243)
437 PRK08762 molybdopterin biosynt 81.3 4.2 9.1E-05 41.2 6.9 34 160-193 134-168 (376)
438 PF03141 Methyltransf_29: Puta 81.0 8.2 0.00018 40.6 8.9 104 158-274 363-466 (506)
439 PRK06124 gluconate 5-dehydroge 81.0 16 0.00035 33.9 10.3 78 160-243 10-97 (256)
440 cd08231 MDR_TM0436_like Hypoth 80.8 15 0.00033 36.2 10.6 99 160-275 177-280 (361)
441 cd08263 Zn_ADH10 Alcohol dehyd 80.8 15 0.00032 36.4 10.5 100 159-275 186-287 (367)
442 PRK08213 gluconate 5-dehydroge 80.6 19 0.00041 33.5 10.8 77 161-243 12-98 (259)
443 PRK09496 trkA potassium transp 80.3 15 0.00032 37.6 10.7 70 163-244 2-75 (453)
444 COG1648 CysG Siroheme synthase 80.2 4.6 9.9E-05 37.8 6.2 100 152-278 3-106 (210)
445 cd08240 6_hydroxyhexanoate_dh_ 79.9 15 0.00033 36.0 10.2 98 160-274 175-273 (350)
446 PRK09291 short chain dehydroge 79.8 19 0.00041 33.3 10.3 76 162-243 3-82 (257)
447 PRK08267 short chain dehydroge 79.8 17 0.00038 33.8 10.2 74 162-243 2-86 (260)
448 PLN02702 L-idonate 5-dehydroge 79.7 14 0.0003 36.6 9.9 100 159-275 180-285 (364)
449 TIGR02371 ala_DH_arch alanine 79.5 50 0.0011 32.8 13.7 114 116-243 86-201 (325)
450 cd05213 NAD_bind_Glutamyl_tRNA 79.4 21 0.00045 35.2 10.9 93 160-275 177-272 (311)
451 cd01483 E1_enzyme_family Super 79.3 8.6 0.00019 33.0 7.3 31 163-194 1-33 (143)
452 TIGR01963 PHB_DH 3-hydroxybuty 79.3 20 0.00043 33.0 10.3 75 162-243 2-87 (255)
453 TIGR02354 thiF_fam2 thiamine b 79.2 17 0.00036 33.6 9.6 33 160-193 20-54 (200)
454 PRK06223 malate dehydrogenase; 79.1 24 0.00051 34.4 11.2 105 162-274 3-118 (307)
455 TIGR02355 moeB molybdopterin s 79.0 4.9 0.00011 38.2 6.1 35 161-195 24-59 (240)
456 PF00072 Response_reg: Respons 79.0 11 0.00024 29.8 7.5 78 187-275 1-78 (112)
457 cd01493 APPBP1_RUB Ubiquitin a 78.8 8.6 0.00019 39.9 8.2 32 161-194 20-54 (425)
458 KOG1209 1-Acyl dihydroxyaceton 78.6 18 0.00038 34.4 9.3 82 159-244 5-91 (289)
459 TIGR01627 A_thal_3515 uncharac 78.6 17 0.00036 34.2 9.2 50 156-207 35-84 (225)
460 cd05298 GH4_GlvA_pagL_like Gly 78.6 14 0.00031 38.3 9.9 39 163-202 2-47 (437)
461 PRK07533 enoyl-(acyl carrier p 78.5 32 0.0007 32.2 11.6 78 160-243 9-97 (258)
462 cd08287 FDH_like_ADH3 formalde 78.5 23 0.0005 34.5 11.0 101 158-275 166-268 (345)
463 PRK06849 hypothetical protein; 78.5 12 0.00027 37.7 9.3 37 160-198 3-42 (389)
464 cd08265 Zn_ADH3 Alcohol dehydr 78.4 22 0.00048 35.6 11.0 101 159-275 202-307 (384)
465 PRK07454 short chain dehydroge 78.3 39 0.00084 30.9 11.9 78 160-243 5-92 (241)
466 cd08245 CAD Cinnamyl alcohol d 78.3 28 0.00062 33.5 11.5 94 159-274 161-255 (330)
467 PRK00258 aroE shikimate 5-dehy 78.2 48 0.001 32.0 12.9 97 133-245 96-196 (278)
468 cd08297 CAD3 Cinnamyl alcohol 78.1 21 0.00045 34.7 10.5 99 159-275 164-265 (341)
469 TIGR02279 PaaC-3OHAcCoADH 3-hy 78.1 11 0.00023 40.0 8.9 104 160-277 4-122 (503)
470 PRK10458 DNA cytosine methylas 77.8 11 0.00024 39.5 8.8 58 162-226 89-146 (467)
471 PRK07576 short chain dehydroge 77.7 31 0.00066 32.5 11.2 77 160-242 8-94 (264)
472 cd01485 E1-1_like Ubiquitin ac 77.7 7.7 0.00017 35.7 6.8 32 161-194 19-53 (198)
473 PRK12439 NAD(P)H-dependent gly 77.7 44 0.00096 33.3 12.8 145 159-323 5-161 (341)
474 TIGR03376 glycerol3P_DH glycer 77.7 33 0.00072 34.4 11.9 144 163-323 1-167 (342)
475 cd08235 iditol_2_DH_like L-idi 77.5 21 0.00046 34.6 10.4 100 158-274 163-264 (343)
476 COG5379 BtaA S-adenosylmethion 77.5 3.9 8.4E-05 40.3 4.9 74 159-241 62-139 (414)
477 PTZ00245 ubiquitin activating 77.3 7.4 0.00016 37.8 6.6 69 161-240 26-115 (287)
478 cd08284 FDH_like_2 Glutathione 77.2 28 0.00061 33.7 11.1 99 159-275 166-266 (344)
479 cd08296 CAD_like Cinnamyl alco 77.1 23 0.0005 34.5 10.5 97 159-275 162-259 (333)
480 PRK06079 enoyl-(acyl carrier p 77.1 42 0.00092 31.3 11.9 76 160-243 6-92 (252)
481 PF03269 DUF268: Caenorhabditi 77.1 6.6 0.00014 35.4 5.9 101 161-274 2-110 (177)
482 cd01488 Uba3_RUB Ubiquitin act 77.0 6.8 0.00015 38.5 6.6 30 163-194 1-33 (291)
483 PLN02819 lysine-ketoglutarate 76.8 27 0.00059 40.3 12.1 107 160-274 568-701 (1042)
484 KOG1227 Putative methyltransfe 76.8 2.9 6.2E-05 41.3 3.8 128 126-270 156-290 (351)
485 cd08279 Zn_ADH_class_III Class 76.6 19 0.00042 35.6 9.9 99 159-274 181-281 (363)
486 PRK12549 shikimate 5-dehydroge 76.5 44 0.00095 32.5 12.1 70 133-204 101-171 (284)
487 PRK12921 2-dehydropantoate 2-r 76.4 14 0.0003 35.7 8.6 93 163-272 2-99 (305)
488 PRK08945 putative oxoacyl-(acy 76.2 13 0.00028 34.4 8.0 78 160-243 11-101 (247)
489 PF11899 DUF3419: Protein of u 76.1 5.2 0.00011 40.8 5.7 42 159-202 34-75 (380)
490 cd08282 PFDH_like Pseudomonas 76.1 35 0.00075 34.0 11.7 107 159-273 175-283 (375)
491 TIGR01757 Malate-DH_plant mala 75.9 26 0.00057 35.9 10.7 111 158-275 41-170 (387)
492 PRK12429 3-hydroxybutyrate deh 75.8 35 0.00075 31.4 10.9 77 161-243 4-90 (258)
493 PRK14851 hypothetical protein; 75.7 8.3 0.00018 42.4 7.4 36 160-195 42-78 (679)
494 cd08290 ETR 2-enoyl thioester 75.6 15 0.00032 35.7 8.7 98 159-274 145-250 (341)
495 TIGR00027 mthyl_TIGR00027 meth 75.5 36 0.00078 32.7 11.1 112 161-278 82-200 (260)
496 cd05297 GH4_alpha_glucosidase_ 75.4 6.8 0.00015 40.4 6.4 75 163-243 2-83 (423)
497 PRK08265 short chain dehydroge 75.2 59 0.0013 30.4 12.4 74 161-243 6-89 (261)
498 PRK06249 2-dehydropantoate 2-r 75.2 18 0.0004 35.4 9.2 99 160-273 4-104 (313)
499 cd05284 arabinose_DH_like D-ar 75.2 27 0.00058 33.9 10.3 98 159-274 166-265 (340)
500 cd08252 AL_MDR Arginate lyase 75.1 25 0.00053 33.9 10.0 97 161-275 150-248 (336)
No 1
>PLN02366 spermidine synthase
Probab=100.00 E-value=1.8e-64 Score=493.87 Aligned_cols=306 Identities=76% Similarity=1.338 Sum_probs=275.6
Q ss_pred hcCCccccccccccccccccccccCccccCcccccCCCCCchhhcccccccccccccCCCcceeeccceEEEEEeCCCee
Q 016578 38 ASAPELDAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPAYRLLHHVCSICCSCSFAGEAHSLKVKEILFKGKSEYQE 117 (387)
Q Consensus 38 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~g~~~~~~v~~vl~~~~S~~q~ 117 (387)
+..||.+.++|..+.++||+|. .++|| |..++++++++|++++|+||+
T Consensus 1 ~~~~~~~~~~~~~~~~~w~~e~--------------~~~~~------------------~~~~~~~v~~~l~~~~s~yQ~ 48 (308)
T PLN02366 1 AAAPESEAKCHSTVIPGWFSEI--------------SPMWP------------------GEAHSLKVEKVLFQGKSDFQD 48 (308)
T ss_pred CCCCCCCccccchhhhceEeec--------------ccCCC------------------CceEEEEEeeEEEeccCCCee
Confidence 3579999999999999999997 56899 999999999999999999999
Q ss_pred EEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHH
Q 016578 118 VLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVI 197 (387)
Q Consensus 118 I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi 197 (387)
|.|++++.+|++|+|||.+|++++||+.||||++|+|++.|++|++||+||||+|++++++++|+++.+|++||||++|+
T Consensus 49 i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi 128 (308)
T PLN02366 49 VLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVI 128 (308)
T ss_pred EEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 198 DVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 198 ~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
+.||++|+..+.+++|||++++++|+++|+++.++++||+||+|+++|.+++..|++.+||+.++++|+|||++++|+++
T Consensus 129 ~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 129 DVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred HHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence 99999998776668899999999999999986545689999999999999988999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEEEecCCCCCCCCCCCCchhhhhccccCCCCCeeeCHHHH
Q 016578 278 MWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIH 357 (387)
Q Consensus 278 ~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask~~~~~~~~~p~~~~~~~~~~~~~~~~l~yy~~~~h 357 (387)
+|.+.+.++.+.++++++|+.++.++++.||+||+|.|||++||++.+..++..|.+..+.+..+.....+|||||+++|
T Consensus 209 ~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~l~yy~~~~h 288 (308)
T PLN02366 209 MWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKEGPAVDFKHPVNPIDKLEGAGKAKRPLKFYNSEVH 288 (308)
T ss_pred cccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECCCccccccccccccchhhhhhcccCCCeEECHHHH
Confidence 99999999999999999995588999999999999999999999974444555564433221100111246899999999
Q ss_pred HHHhcCCHHHHHHhhcCC
Q 016578 358 SAAFALPAFLKREVSVLG 375 (387)
Q Consensus 358 ~aaF~lP~~~~~~l~~~~ 375 (387)
+++|+||+|+++.|+...
T Consensus 289 ~~~f~lp~~~~~~l~~~~ 306 (308)
T PLN02366 289 RAAFCLPSFAKRELESLL 306 (308)
T ss_pred HHHhcChHHHHHHHHhcc
Confidence 999999999999998664
No 2
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-66 Score=491.20 Aligned_cols=314 Identities=49% Similarity=0.829 Sum_probs=294.9
Q ss_pred hhhHhhhhcCCccccccccccccccccccccCccccCcccccCCCCCchhhcccccccccccccCCCcceeeccceEEEE
Q 016578 31 SCCLKARASAPELDAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPAYRLLHHVCSICCSCSFAGEAHSLKVKEILFK 110 (387)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~g~~~~~~v~~vl~~ 110 (387)
.+++.+....+.....+|.++..|||+|.+.. +++|| |++++++|+++|++
T Consensus 21 ~~~~~~~~~~q~~~~s~h~~i~~GwF~e~~~~-----------~~i~p------------------g~a~tLkVe~vl~~ 71 (337)
T KOG1562|consen 21 LRNELEQLFPQLELESSHPSIENGWFAEIHNK-----------KDIWP------------------GQALTLKVEKVLHD 71 (337)
T ss_pred hhhhHhhhchhhhhccccCcccCCeEeeecCC-----------CCCCC------------------CceeEEEeeeeccc
Confidence 78899999989888999999999999998211 34899 99999999999999
Q ss_pred EeCCCeeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEE
Q 016578 111 GKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDIC 190 (387)
Q Consensus 111 ~~S~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~V 190 (387)
++|.||++.|+++..+|++|++||++|++++|||.|+||++|+|+++|++|++||+||+|+|++.|++.+|..+++|+.|
T Consensus 72 ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~ 151 (337)
T KOG1562|consen 72 EKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLC 151 (337)
T ss_pred CchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeeeeccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCe
Q 016578 191 EIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 270 (387)
Q Consensus 191 EiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGv 270 (387)
|||..|++.+++|+|.+++++++++|.++.||++.|++....++|||||+|++||.+|+..+|.+.+|+.+.++||+||+
T Consensus 152 eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv 231 (337)
T KOG1562|consen 152 EIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGV 231 (337)
T ss_pred hhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcE
Confidence 99999999999999999999999999999999999999887789999999999999999999999999999999999999
Q ss_pred EEecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEEEecCCCCCCCCCCCCchhhhhccccCCCCCe
Q 016578 271 LCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELR 350 (387)
Q Consensus 271 lv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask~~~~~~~~~p~~~~~~~~~~~~~~~~l~ 350 (387)
+++|+++.|++.++++++.+.++.+|+ .+.|.++++||||+|.+||++|||..+..+|.+|.++++..+.......+|+
T Consensus 232 ~~~q~ec~wl~~~~i~e~r~~~~~~f~-~t~ya~ttvPTypsg~igf~l~s~~~~~~~~~~p~n~i~~~e~~~l~~~~L~ 310 (337)
T KOG1562|consen 232 VCTQGECMWLHLDYIKEGRSFCYVIFD-LTAYAITTVPTYPSGRIGFMLCSKLKPDGKYKTPGNPITCKEQLSLYEEQLL 310 (337)
T ss_pred EEEecceehHHHHHHHHHHHhHHHhcC-ccceeeecCCCCccceEEEEEecccCCCCCccCCCCccCHHHHHhhhhhhhc
Confidence 999999999999999999999999999 8999999999999999999999987789999999998875432222345689
Q ss_pred eeCHHHHHHHhcCCHHHHHHhhcC
Q 016578 351 FYNSEIHSAAFALPAFLKREVSVL 374 (387)
Q Consensus 351 yy~~~~h~aaF~lP~~~~~~l~~~ 374 (387)
|||.++|+|+|+||.|+++.+...
T Consensus 311 yyn~e~h~aaf~lPsf~~k~~~~~ 334 (337)
T KOG1562|consen 311 YYNVEFHSAAFVLPSFAEKWLFYQ 334 (337)
T ss_pred cCCchhceeeeechHHHHHHHHHH
Confidence 999999999999999999998754
No 3
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=4.6e-60 Score=451.51 Aligned_cols=250 Identities=21% Similarity=0.282 Sum_probs=221.0
Q ss_pred CcceeeccceEEEEEeCCCeeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHH
Q 016578 97 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLR 176 (387)
Q Consensus 97 g~~~~~~v~~vl~~~~S~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~ 176 (387)
+.+++++++++|++++|+||+|+|+||..||++|+|| .+|.+++|||+|||||+|+|+++|++|++||+||||+|+++|
T Consensus 10 ~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~R 88 (262)
T PRK00536 10 YLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAH 88 (262)
T ss_pred CceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHH
Confidence 8999999999999999999999999999999999999 666799999999999999999999999999999999999999
Q ss_pred HHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHH
Q 016578 177 EISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKP 256 (387)
Q Consensus 177 el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~e 256 (387)
|++||+ .+|++||||++|+++||++||.++.+++|||++++. ++.+...++||+||+|++ ++++
T Consensus 89 EvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~~~~~fDVIIvDs~---------~~~~ 152 (262)
T PRK00536 89 QLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDLDIKKYDLIICLQE---------PDIH 152 (262)
T ss_pred HHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhccCCcCCEEEEcCC---------CChH
Confidence 999997 499999999999999999999998889999999997 233433468999999975 3578
Q ss_pred HHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEEEecCCCCCCCCCCCCch
Q 016578 257 FFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPI 336 (387)
Q Consensus 257 f~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask~~~~~~~~~p~~~~ 336 (387)
||+.++++|+|||++++|++|+|++.+.++.+.++++++|+ .+.+|.++||+| |.|||++||++..+.....
T Consensus 153 fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~-~v~~y~~~vp~~--g~wgf~~aS~~~~p~~~~~----- 224 (262)
T PRK00536 153 KIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS-IAMPFVAPLRIL--SNKGYIYASFKTHPLKDLM----- 224 (262)
T ss_pred HHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC-ceEEEEecCCCc--chhhhheecCCCCCccchh-----
Confidence 99999999999999999999999999999999999999999 788999999999 7999999998733221100
Q ss_pred hhhhccccCCCCCeeeCHHHHHHHhcCCHHHHHHhhcC
Q 016578 337 EKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 374 (387)
Q Consensus 337 ~~~~~~~~~~~~l~yy~~~~h~aaF~lP~~~~~~l~~~ 374 (387)
.++.. ....|||||+++|+|+|+||+|++++|+..
T Consensus 225 --~~~~~-~~~~lryy~~~~h~a~F~lP~~v~~~l~~~ 259 (262)
T PRK00536 225 --LQKIE-ALKSVRYYNEDIHRAAFALPKNLQEVFKDN 259 (262)
T ss_pred --hhhhc-ccCCceeeCHHHHHHHhcCcHHHHHHHHHh
Confidence 11111 113489999999999999999999999754
No 4
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-57 Score=435.54 Aligned_cols=269 Identities=45% Similarity=0.776 Sum_probs=244.7
Q ss_pred CcceeeccceEEEEEeCCCeeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHH
Q 016578 97 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLR 176 (387)
Q Consensus 97 g~~~~~~v~~vl~~~~S~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~ 176 (387)
+.++.+++++++++++|+||+|.+++++.+|++|++||.+|++++|++.||||++|+|+++|++|++||+||+|+|+++|
T Consensus 13 ~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlR 92 (282)
T COG0421 13 GLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLR 92 (282)
T ss_pred cccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEEEECCCccHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHH
Q 016578 177 EISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKP 256 (387)
Q Consensus 177 el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~e 256 (387)
++++|.+++++++||||++|+++||++|+.++.+.+|||++++++|+.+|+++.+ ++||+||+|++||.+|+..||+.+
T Consensus 93 evlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~-~~fDvIi~D~tdp~gp~~~Lft~e 171 (282)
T COG0421 93 EVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE-EKFDVIIVDSTDPVGPAEALFTEE 171 (282)
T ss_pred HHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC-CcCCEEEEcCCCCCCcccccCCHH
Confidence 9999999999999999999999999999999876569999999999999999874 489999999999999999999999
Q ss_pred HHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEEEecCCCCCCCCCCCCch
Q 016578 257 FFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPI 336 (387)
Q Consensus 257 f~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask~~~~~~~~~p~~~~ 336 (387)
||+.++++|+++|++++|++++|++.+.+..+.+.++.+|+ .+.++...+|+|++|.|+|+++|.+.. +|+..+
T Consensus 172 Fy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~-~~~~~~~~ipt~~~g~~~f~~~s~~~~-----~~~~~~ 245 (282)
T COG0421 172 FYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFS-IVPPYVAPIPTYPSGFWGFIVASFNKA-----HPLKSL 245 (282)
T ss_pred HHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhcc-ccccceeccceecCCceEEEEeecCCC-----Ccccch
Confidence 99999999999999999999999999899999999999999 788888999999999999999995522 223333
Q ss_pred hhhhccccCCCCCeeeCHHHHHHHhcCCHHHHHHhh
Q 016578 337 EKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 372 (387)
Q Consensus 337 ~~~~~~~~~~~~l~yy~~~~h~aaF~lP~~~~~~l~ 372 (387)
+....+......++|||+++|.++|+||+|++++++
T Consensus 246 ~~~~~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~ 281 (282)
T COG0421 246 DALQARALALLTLKYYNEDIHDAAFALPKNLQDELK 281 (282)
T ss_pred hHHHHHHhhhhhhccCcHHHhhhhhcCCcchhhhcc
Confidence 322222222245699999999999999999999875
No 5
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=3.3e-56 Score=432.02 Aligned_cols=270 Identities=42% Similarity=0.764 Sum_probs=241.0
Q ss_pred CcceeeccceEEEEEeCCCeeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHH
Q 016578 97 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLR 176 (387)
Q Consensus 97 g~~~~~~v~~vl~~~~S~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~ 176 (387)
+.++.+.++++|++++|+||+|.|++++.+|++|+|||.+|++++||+.||||++|+|++.|++|++||+||||+|++++
T Consensus 13 ~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~ 92 (283)
T PRK00811 13 NYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLR 92 (283)
T ss_pred ccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEEEEecCchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceEEEEeCCHHHHHHHHhhcccccCC-CCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchH
Q 016578 177 EISRHDSVELIDICEIDKMVIDVSKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEK 255 (387)
Q Consensus 177 el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~-~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ 255 (387)
++++++++.+|++||||+++++.|+++|+..+.+ ++++|++++++|+++|++.. +++||+||+|+++|.+++..|++.
T Consensus 93 ~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-~~~yDvIi~D~~dp~~~~~~l~t~ 171 (283)
T PRK00811 93 EVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-ENSFDVIIVDSTDPVGPAEGLFTK 171 (283)
T ss_pred HHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-CCcccEEEECCCCCCCchhhhhHH
Confidence 9999987889999999999999999999877554 47899999999999999763 568999999999999888899999
Q ss_pred HHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEEEecCCCCCCCCCCCCc
Q 016578 256 PFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINP 335 (387)
Q Consensus 256 ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask~~~~~~~~~p~~~ 335 (387)
+||+.++++|+|||++++|.++++.+...+..+.++++++|+ .+.++...+|+||+|.|||++||++.++.. .|.+.
T Consensus 172 ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vp~~~~~~w~f~~as~~~~~~~--~~~~~ 248 (283)
T PRK00811 172 EFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP-IVRPYQAAIPTYPSGLWSFTFASKNDDLKF--LPLDV 248 (283)
T ss_pred HHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCC-CEEEEEeECCcccCchheeEEeecCccccc--Ccccc
Confidence 999999999999999999999998888899999999999999 788889999999999999999998533221 22222
Q ss_pred hhhhhccccCCCCCeeeCHHHHHHHhcCCHHHHHHhh
Q 016578 336 IEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 372 (387)
Q Consensus 336 ~~~~~~~~~~~~~l~yy~~~~h~aaF~lP~~~~~~l~ 372 (387)
+.. +......+|||||+++|+|+|+||+|+|++|+
T Consensus 249 ~~~--~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~ 283 (283)
T PRK00811 249 IEA--RFAERGIKTRYYNPELHKAAFALPQFVKDALK 283 (283)
T ss_pred chh--hHhhccCCCeEECHHHHHHHhcCcHHHHHhhC
Confidence 111 11111236999999999999999999999874
No 6
>PLN02823 spermine synthase
Probab=100.00 E-value=3.7e-53 Score=418.20 Aligned_cols=273 Identities=32% Similarity=0.573 Sum_probs=237.6
Q ss_pred CcceeeccceEEEEEeCCCeeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHH
Q 016578 97 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLR 176 (387)
Q Consensus 97 g~~~~~~v~~vl~~~~S~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~ 176 (387)
+..+.+.++++|++++|+||+|+|+++..+|++|++||.+|+++.||+.|||||+|++++.|++|++||+||+|+|++++
T Consensus 40 ~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~r 119 (336)
T PLN02823 40 DLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAR 119 (336)
T ss_pred CcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccccchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCC--CCccccch
Q 016578 177 EISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV--GPAQELVE 254 (387)
Q Consensus 177 el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~--~~~~~L~~ 254 (387)
+++++.++.+|++||||++++++||++|+....++++||++++++|+++|++.. +++||+||+|++||. +++..||+
T Consensus 120 e~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi~D~~dp~~~~~~~~Lyt 198 (336)
T PLN02823 120 EVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVIIGDLADPVEGGPCYQLYT 198 (336)
T ss_pred HHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEEecCCCccccCcchhhcc
Confidence 999998889999999999999999999987665678999999999999999765 568999999999986 45678999
Q ss_pred HHHHH-HHHHhccCCCeEEeccccc--chhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEEEecCCCCCCCCC
Q 016578 255 KPFFD-TIAKALRPGGVLCNMAESM--WLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVN 331 (387)
Q Consensus 255 ~ef~~-~l~~~LkpgGvlv~q~~s~--~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask~~~~~~~~~ 331 (387)
.+||+ .++++|+|||++++|+.++ +.+.+.+..+.++++++|+ .+..+.+.||+|++ .|||++||+. +..++.
T Consensus 199 ~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~-~v~~y~~~vPsf~~-~w~f~~aS~~-~~~~~~- 274 (336)
T PLN02823 199 KSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK-YVVPYTAHVPSFAD-TWGWVMASDH-PFADLS- 274 (336)
T ss_pred HHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC-CEEEEEeecCCCCC-ceEEEEEeCC-ccccCC-
Confidence 99999 9999999999999998763 4456788999999999999 67888899999986 5999999986 333322
Q ss_pred CCCchhhhhccccCCCCCeeeCHHHHHHHhcCCHHHHHHhhcCCC
Q 016578 332 PINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVLGD 376 (387)
Q Consensus 332 p~~~~~~~~~~~~~~~~l~yy~~~~h~aaF~lP~~~~~~l~~~~~ 376 (387)
| ..++... ..+...++||||+++|+++|+||+|+++.|+....
T Consensus 275 ~-~~~~~~~-~~~~~~~lryy~~~~h~a~F~lP~~~~~~l~~~~~ 317 (336)
T PLN02823 275 A-EELDSRI-KERIDGELKYLDGETFSSAFALNKTVRQALANETH 317 (336)
T ss_pred h-hHHHHhh-hhcccCCCeEECHHHHHHHccCcHHHHHhhcCCCC
Confidence 1 1121100 01112468999999999999999999999876554
No 7
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=100.00 E-value=2.5e-51 Score=395.34 Aligned_cols=261 Identities=45% Similarity=0.798 Sum_probs=233.8
Q ss_pred CcceeeccceEEEEEeCCCeeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHH
Q 016578 97 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLR 176 (387)
Q Consensus 97 g~~~~~~v~~vl~~~~S~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~ 176 (387)
|.+++++++++|++++|+||+|.|++++.+|++|+|||.+|+++.+|+.||||++|++++.|++|++||+||||+|++++
T Consensus 9 ~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~ 88 (270)
T TIGR00417 9 NFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLR 88 (270)
T ss_pred CceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEcCCchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHH
Q 016578 177 EISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKP 256 (387)
Q Consensus 177 el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~e 256 (387)
+++++.+..+|++||+|+++++.++++++..+..+++++++++.+|++++++.. +++||+||+|.+++.++...|++.+
T Consensus 89 ~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvIi~D~~~~~~~~~~l~~~e 167 (270)
T TIGR00417 89 EVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVIIVDSTDPVGPAETLFTKE 167 (270)
T ss_pred HHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEEEEeCCCCCCcccchhHHH
Confidence 999997778999999999999999999987655577899999999999999765 5689999999999888888899999
Q ss_pred HHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEEEecC-CCCCCCCCCCCc
Q 016578 257 FFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTE-GPHVDFVNPINP 335 (387)
Q Consensus 257 f~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask~-~~~~~~~~p~~~ 335 (387)
||+.++++|+|||++++++.+++.....+..+.++++++|+ .+.++.+.+|+||+|.|||++||++ ..+.. .+.+.
T Consensus 168 f~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~-~v~~~~~~vp~~~~g~~~~~~as~~~~~~~~--~~~~~ 244 (270)
T TIGR00417 168 FYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFP-ITEYYTANIPTYPSGLWTFTIGSKNKYDPLE--VEDRR 244 (270)
T ss_pred HHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCC-CeEEEEEEcCccccchhEEEEEECCCCCCCC--cchhh
Confidence 99999999999999999999999988999999999999999 7888899999999999999999983 11221 11111
Q ss_pred hhhhhccccCCCCCeeeCHHHHHHHhcCCHH
Q 016578 336 IEKLEGADKHKRELRFYNSEIHSAAFALPAF 366 (387)
Q Consensus 336 ~~~~~~~~~~~~~l~yy~~~~h~aaF~lP~~ 366 (387)
+. .....++||||+++|+++|+||+|
T Consensus 245 ~~-----~~~~~~~~~y~~~~h~~~f~lp~~ 270 (270)
T TIGR00417 245 IS-----EFEDGKTKYYNPDIHKAAFVLPKW 270 (270)
T ss_pred hh-----hcccCCCeEECHHHHHHhcCCCCC
Confidence 11 112235899999999999999986
No 8
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=1e-50 Score=386.05 Aligned_cols=230 Identities=45% Similarity=0.771 Sum_probs=214.8
Q ss_pred CcceeeccceEEEEEeCCCeeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHH
Q 016578 97 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLR 176 (387)
Q Consensus 97 g~~~~~~v~~vl~~~~S~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~ 176 (387)
+..+.++++++|++++|+||+|.|++++.+|++|+|||.+|++++||+.|||||+|+|++.|++|++||+||+|+|++++
T Consensus 13 ~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ 92 (246)
T PF01564_consen 13 GLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTAR 92 (246)
T ss_dssp TEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EEEEEESTTSHHHH
T ss_pred CceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCceEEEcCCChhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHH
Q 016578 177 EISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKP 256 (387)
Q Consensus 177 el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~e 256 (387)
++++|+++++|++||||+.|++.|+++|+..+.+++|||++++++||+.|+++..+++||+||+|+++|.+++..||+.+
T Consensus 93 ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~e 172 (246)
T PF01564_consen 93 ELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTRE 172 (246)
T ss_dssp HHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHH
T ss_pred hhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHH
Confidence 99999989999999999999999999999877667899999999999999988743389999999999999888899999
Q ss_pred HHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEEEecCCCCC
Q 016578 257 FFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHV 327 (387)
Q Consensus 257 f~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask~~~~~ 327 (387)
||+.++++|+|||++++|+.+++.+...++.+.++++++|+ .+.++++.||+|+++.|+|++||+..+.+
T Consensus 173 f~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~~~~~~~~~~s~~~~~~ 242 (246)
T PF01564_consen 173 FYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPYTAYVPSYGSGWWSFASASKDINLV 242 (246)
T ss_dssp HHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEEEEECTTSCSSEEEEEEEESSTTT-
T ss_pred HHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEEEEEcCeecccceeEEEEeCCCCcc
Confidence 99999999999999999999999999999999999999999 89999999999999999999999875433
No 9
>PRK03612 spermidine synthase; Provisional
Probab=100.00 E-value=2.3e-44 Score=375.63 Aligned_cols=254 Identities=26% Similarity=0.470 Sum_probs=222.3
Q ss_pred ceeeccceEEEEEeCCCeeEEEEEecC-ce--eEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHH
Q 016578 99 AHSLKVKEILFKGKSEYQEVLVFESLA-YG--KVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVL 175 (387)
Q Consensus 99 ~~~~~v~~vl~~~~S~~q~I~v~es~~-~G--~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~ 175 (387)
.+.+..++++++++|+||+|.|++++. +| +.|++||.+|.++.||+.|||+++|++++.|+++++||+||||+|.++
T Consensus 233 ~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~ 312 (521)
T PRK03612 233 EQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLAL 312 (521)
T ss_pred HhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHH
Confidence 345678899999999999999999876 46 889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceEEEEeCCHHHHHHHHh--hcccccC-CCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCC-ccc
Q 016578 176 REISRHDSVELIDICEIDKMVIDVSKK--YFPELAV-GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQE 251 (387)
Q Consensus 176 ~el~k~~~~~~Vt~VEiD~~vi~~ar~--~~~~~~~-~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~-~~~ 251 (387)
+++++++++++|++||||+++++.+|+ +++..+. .++|||++++++|+++|++.. +++||+||+|.++|..+ ..+
T Consensus 313 ~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~~~~ 391 (521)
T PRK03612 313 REVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEKFDVIIVDLPDPSNPALGK 391 (521)
T ss_pred HHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCCCCEEEEeCCCCCCcchhc
Confidence 999999777899999999999999999 4555443 467899999999999999765 46899999999998766 467
Q ss_pred cchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHH-cCCCcceEEEEeeccCCCcEEEEEEecCCCCCCCC
Q 016578 252 LVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET-FKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFV 330 (387)
Q Consensus 252 L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~-F~~~v~~~~~~iPtyp~g~~gf~~ask~~~~~~~~ 330 (387)
+++++||+.++++|+|||++++|..+++.+.+.+.++.++++++ | .+.+|...+|+| |+|||++|||+..+.+.
T Consensus 392 L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf--~v~~~~~~vps~--g~w~f~~as~~~~~~~~- 466 (521)
T PRK03612 392 LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL--ATTPYHVNVPSF--GEWGFVLAGAGARPPLA- 466 (521)
T ss_pred cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC--EEEEEEeCCCCc--chhHHHeeeCCCCcccc-
Confidence 99999999999999999999999999999889999999999999 7 467788999999 79999999986322211
Q ss_pred CCCCchhhhhccccCCCCCeeeCHHHHHHHhcCCHHHH
Q 016578 331 NPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLK 368 (387)
Q Consensus 331 ~p~~~~~~~~~~~~~~~~l~yy~~~~h~aaF~lP~~~~ 368 (387)
. . .....++||||+++|+++|+||+|++
T Consensus 467 ----~---~---~~~~~~~~~y~~~~h~~~f~lp~~~~ 494 (521)
T PRK03612 467 ----V---P---TELPVPLRFLDPALLAAAFVFPKDMR 494 (521)
T ss_pred ----c---c---hhcccCCcccCHHHHHHHhCCChhhh
Confidence 0 0 11234699999999999999999999
No 10
>PRK01581 speE spermidine synthase; Validated
Probab=100.00 E-value=1.3e-43 Score=349.83 Aligned_cols=218 Identities=28% Similarity=0.414 Sum_probs=197.7
Q ss_pred ccceEEEEEeCCCeeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcC
Q 016578 103 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHD 182 (387)
Q Consensus 103 ~v~~vl~~~~S~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~ 182 (387)
.+.++||+++|+||+|.|+++..+ .|+|||.+|++++||+.||||++|++++.|++|++||+||||+|++++++++++
T Consensus 95 ~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~ 172 (374)
T PRK01581 95 GEHTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYE 172 (374)
T ss_pred cccCEEEecCCCCceEEEEEcCCE--EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcC
Confidence 456999999999999999999876 699999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEEeCCHHHHHHHHhh--cccccC-CCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCC-ccccchHHHH
Q 016578 183 SVELIDICEIDKMVIDVSKKY--FPELAV-GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQELVEKPFF 258 (387)
Q Consensus 183 ~~~~Vt~VEiD~~vi~~ar~~--~~~~~~-~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~-~~~L~~~ef~ 258 (387)
++++|++||||++|+++|+++ ++.++. .+++||++++++|+++|++.. .++||+||+|+++|... ...+|+.+||
T Consensus 173 ~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy 251 (374)
T PRK01581 173 TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-SSLYDVIIIDFPDPATELLSTLYTSELF 251 (374)
T ss_pred CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-CCCccEEEEcCCCccccchhhhhHHHHH
Confidence 889999999999999999984 343433 478999999999999999765 56899999999998753 6789999999
Q ss_pred HHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEEEecCCC
Q 016578 259 DTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGP 325 (387)
Q Consensus 259 ~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask~~~ 325 (387)
+.++++|+|||++++|+.+++.....+..+.++++++|. .+..|.+.||+|++ .|||++||+...
T Consensus 252 ~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~-~v~~y~t~vPsyg~-~WgF~~as~~~~ 316 (374)
T PRK01581 252 ARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGL-TVKSYHTIVPSFGT-DWGFHIAANSAY 316 (374)
T ss_pred HHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCC-ceEEEEEecCCCCC-ceEEEEEeCCcc
Confidence 999999999999999999999888888999999999999 67888899999965 599999998633
No 11
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=100.00 E-value=3.3e-41 Score=325.98 Aligned_cols=249 Identities=29% Similarity=0.467 Sum_probs=219.2
Q ss_pred eeccceEEEEEeCCCeeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHh
Q 016578 101 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISR 180 (387)
Q Consensus 101 ~~~v~~vl~~~~S~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k 180 (387)
.+-.++|+|..+|+||+|.|.+... ...|++||..|++.+||..|||.++|+++...+..++||++|+|||..+||++|
T Consensus 231 qlygdeIIh~~qspYQ~iVvTr~g~-d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellk 309 (508)
T COG4262 231 QLYGDEIIHAIQSPYQRIVVTRRGD-DLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLK 309 (508)
T ss_pred HhhcCceeeeccCccceEEEEEecC-ceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHh
Confidence 3445999999999999999998753 467999999999999999999999999998888999999999999999999999
Q ss_pred cCCCceEEEEeCCHHHHHHHHhh--cccccC-CCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCC-ccccchHH
Q 016578 181 HDSVELIDICEIDKMVIDVSKKY--FPELAV-GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQELVEKP 256 (387)
Q Consensus 181 ~~~~~~Vt~VEiD~~vi~~ar~~--~~~~~~-~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~-~~~L~~~e 256 (387)
++.+++|+.||+||+|++++++. +...+. .++|||+++++.|+++|++.. .+.||+||+|.+||..+ ...+|+.|
T Consensus 310 yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~fD~vIVDl~DP~tps~~rlYS~e 388 (508)
T COG4262 310 YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADMFDVVIVDLPDPSTPSIGRLYSVE 388 (508)
T ss_pred CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-cccccEEEEeCCCCCCcchhhhhhHH
Confidence 98899999999999999999954 444433 589999999999999999876 56999999999999887 57899999
Q ss_pred HHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEEEecCCCCCCCCCCCCch
Q 016578 257 FFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPI 336 (387)
Q Consensus 257 f~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask~~~~~~~~~p~~~~ 336 (387)
||..++++|+++|++++|+++++..++.++++.+++++.-- .+-.|..+|||| |.|||++|++. +.+|..|.
T Consensus 389 FY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~-~~~Pyhv~VPTF--GeWGf~l~~~~--~~~fep~~--- 460 (508)
T COG4262 389 FYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGY-RVWPYHVHVPTF--GEWGFILAAPG--DADFEPPT--- 460 (508)
T ss_pred HHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcc-eeeeeEEecCcc--cccceeecccc--cCCCCCCc---
Confidence 99999999999999999999999999999999999998853 455667999999 89999999986 45554321
Q ss_pred hhhhccccCCCCCeeeCHHHHHHHhcCCHH
Q 016578 337 EKLEGADKHKRELRFYNSEIHSAAFALPAF 366 (387)
Q Consensus 337 ~~~~~~~~~~~~l~yy~~~~h~aaF~lP~~ 366 (387)
....+++|.|.|+..|+|++-+.
T Consensus 461 -------e~~~~t~FLd~e~~~a~~~fg~d 483 (508)
T COG4262 461 -------EYRPPTRFLDAEVLHAAFVFGPD 483 (508)
T ss_pred -------ccCcccchhhHHHHHHHHhcCCC
Confidence 12357999999999999998665
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.92 E-value=2.8e-23 Score=199.56 Aligned_cols=199 Identities=25% Similarity=0.335 Sum_probs=154.6
Q ss_pred EeCCCeeEEEEEecCceeEEEEcC-eEeec----cc--chhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCC
Q 016578 111 GKSEYQEVLVFESLAYGKVLVLDG-IVQLT----EK--DECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS 183 (387)
Q Consensus 111 ~~S~~q~I~v~es~~~G~~L~lDG-~~q~~----e~--de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~ 183 (387)
.++.|+.|.|+|.. ..+.|.+|+ ..|+. ++ ..+.|+++|.. .+..++++++||+||+|+|.+++.++++.+
T Consensus 12 ~~~~~~~i~v~e~~-~~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~-~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p 89 (262)
T PRK04457 12 AKAGFPEVGVSEEG-GVRSLHLGSDTVQSSMRIDDPSELELAYTRAMMG-FLLFNPRPQHILQIGLGGGSLAKFIYTYLP 89 (262)
T ss_pred ccccCCCcEEEecC-CEEEEEECCCcceeeeecCCcccccCHHHHHHHH-HHhcCCCCCEEEEECCCHhHHHHHHHHhCC
Confidence 45779999999987 457888887 57764 22 24578776642 222357789999999999999999998877
Q ss_pred CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHH
Q 016578 184 VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK 263 (387)
Q Consensus 184 ~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~ 263 (387)
..+|++||+|+++++.|+++|.... .+++++++++|+++++... .++||+|++|.++...++..+.+.+|++.+++
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~-~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~ 165 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVH-RHSTDVILVDGFDGEGIIDALCTQPFFDDCRN 165 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhC-CCCCCEEEEeCCCCCCCccccCcHHHHHHHHH
Confidence 7899999999999999999986431 2579999999999999765 46899999998876666677889999999999
Q ss_pred hccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEEEecC
Q 016578 264 ALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTE 323 (387)
Q Consensus 264 ~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask~ 323 (387)
+|+|||+++++. |.....+..++++++++|++.+ + .+|...+|++ .++|++.
T Consensus 166 ~L~pgGvlvin~---~~~~~~~~~~l~~l~~~F~~~~--~--~~~~~~~~N~-v~~a~~~ 217 (262)
T PRK04457 166 ALSSDGIFVVNL---WSRDKRYDRYLERLESSFEGRV--L--ELPAESHGNV-AVFAFKS 217 (262)
T ss_pred hcCCCcEEEEEc---CCCchhHHHHHHHHHHhcCCcE--E--EEecCCCccE-EEEEECC
Confidence 999999999864 4444556788899999998432 2 2355555553 4566664
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.58 E-value=8.6e-15 Score=121.21 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=83.7
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 240 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~ 240 (387)
..+|||||||+|.++.++++..+..+|++||+|+++++.+++++.... ..++++++.+|+ .+.... .++||+|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~-~~~~D~v~~ 76 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDF-LEPFDLVIC 76 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTT-SSCEEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCccc-CCCCCEEEE
Confidence 569999999999999999995456799999999999999999984332 257999999999 433333 457999998
Q ss_pred cC-CCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 241 DS-SDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 241 D~-~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+. ........ -...++++.++++|+|||++++.
T Consensus 77 ~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 77 SGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp CSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCccccccch-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 77 22111111 12356899999999999999874
No 14
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.55 E-value=1.1e-13 Score=128.45 Aligned_cols=166 Identities=21% Similarity=0.285 Sum_probs=135.7
Q ss_pred eEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccc
Q 016578 128 KVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL 207 (387)
Q Consensus 128 ~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~ 207 (387)
-.+.+||+-+........+...++-+.+...+...+|||..+|-|.++.+.++.+ ..+|..||.||.|+++|+-+- +
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNP--w 178 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNP--W 178 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCC--C
Confidence 4578999988766666667778887777656678899999999999999999985 459999999999999998752 2
Q ss_pred cCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccccc---chhhhH
Q 016578 208 AVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM---WLHTHL 284 (387)
Q Consensus 208 ~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~---~~~~~~ 284 (387)
+.++.+.+++++.||+.+++++..+++||+||.|++- ...+.+||+.+||+++++.|+|||.+.-..++| +...+.
T Consensus 179 Sr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPR-fS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~ 257 (287)
T COG2521 179 SRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPR-FSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDL 257 (287)
T ss_pred CccccccccEEecccHHHHHhcCCccccceEeeCCCc-cchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCCh
Confidence 2344556899999999999999888899999999764 344668999999999999999999988655554 455677
Q ss_pred HHHHHHHHHHH-cC
Q 016578 285 IEDMISICRET-FK 297 (387)
Q Consensus 285 ~~~~~~~l~~~-F~ 297 (387)
.+.+.+.++++ |.
T Consensus 258 ~~gVa~RLr~vGF~ 271 (287)
T COG2521 258 PKGVAERLRRVGFE 271 (287)
T ss_pred hHHHHHHHHhcCce
Confidence 88888998877 44
No 15
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.51 E-value=1.9e-13 Score=114.14 Aligned_cols=109 Identities=28% Similarity=0.488 Sum_probs=87.2
Q ss_pred CEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEc
Q 016578 162 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVD 241 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D 241 (387)
.+|||+|||+|.++..+++.. ..+++++|+|+..++.++++++.... +.+++++++|.+++.+....++||+|++|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL---DDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT---TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC---CceEEEEECchhhchhhccCceeEEEEEC
Confidence 489999999999999999987 78999999999999999999887522 45799999999998755556799999999
Q ss_pred CCCCCCC----ccccchHHHHHHHHHhccCCCeEEec
Q 016578 242 SSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 242 ~~dp~~~----~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
.+..... ...-....|++.+.+.|+|||++++.
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 8764211 11223467999999999999999864
No 16
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.44 E-value=5.2e-13 Score=120.15 Aligned_cols=107 Identities=21% Similarity=0.340 Sum_probs=85.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
..++|||||||+|.++..++++.+..+|+++|+++.+++.+++++.... +++ ++++..|..+.+. +++||+|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~--~~~--v~~~~~d~~~~~~---~~~fD~Iv 103 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG--LEN--VEVVQSDLFEALP---DGKFDLIV 103 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT--CTT--EEEEESSTTTTCC---TTCEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC--ccc--ccccccccccccc---ccceeEEE
Confidence 6679999999999999999998777789999999999999999987652 222 9999999877653 46899999
Q ss_pred EcCCCCCCCc-cccchHHHHHHHHHhccCCCeEEe
Q 016578 240 VDSSDPVGPA-QELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 240 ~D~~dp~~~~-~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
++++...+.. ......+|++.+.++|+|||.+.+
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 9987544442 223457899999999999998864
No 17
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.44 E-value=2e-12 Score=118.81 Aligned_cols=114 Identities=21% Similarity=0.382 Sum_probs=93.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCeeEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fDvI 238 (387)
...+|||||||+|.++..+++..+..+|++||+++.+++.|+++.... ++ .+++++.+|+.+++... +++.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~--~l--~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL--GL--KNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh--CC--CCEEEEccCHHHHHHhhCCCCceeEE
Confidence 445899999999999999998777789999999999999999887644 22 48999999998876443 34589999
Q ss_pred EEcCCCCCCCc----cccchHHHHHHHHHhccCCCeEEecccc
Q 016578 239 IVDSSDPVGPA----QELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 239 I~D~~dp~~~~----~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
+++.++|+... ..+...++++.++++|+|||.|.+.+.+
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 99998887432 2355678999999999999999876644
No 18
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.41 E-value=4e-12 Score=117.59 Aligned_cols=127 Identities=27% Similarity=0.352 Sum_probs=94.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHh-hCCCCCeeEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLR-QVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~-~~~~~~fDvI 238 (387)
+..+|||||||+|..+..+++..+..+|++||+++.+++.+++++... + -++++++++|+.+.+. ..++++||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~--~--~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE--G--LTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc--C--CCCEEEEecCHHHHHHHHcCccccceE
Confidence 467999999999999999998766679999999999999999987543 1 2579999999944343 2345689999
Q ss_pred EEcCCCCCCCc----cccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHH
Q 016578 239 IVDSSDPVGPA----QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 294 (387)
Q Consensus 239 I~D~~dp~~~~----~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~ 294 (387)
++..++|+... .......+++.+.+.|+|||++++...+ ......+.+.+++
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~----~~~~~~~~~~~~~ 171 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW----EGYAEYMLEVLSA 171 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC----HHHHHHHHHHHHh
Confidence 99877665331 1123567999999999999999875533 2344455555544
No 19
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.41 E-value=1e-11 Score=117.75 Aligned_cols=131 Identities=19% Similarity=0.295 Sum_probs=103.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
+..++|||||+|+|.++..+++..+..+|++||+++++.+.|++++... .+ ..|++++++|..+|.+.....+||+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l-~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PL-EERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cc-hhceeEehhhHHHhhhcccccccCEE
Confidence 4578999999999999999999855589999999999999999997653 22 46999999999999877655579999
Q ss_pred EEcCCCCCCC-c-------------cccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHH-HcC
Q 016578 239 IVDSSDPVGP-A-------------QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE-TFK 297 (387)
Q Consensus 239 I~D~~dp~~~-~-------------~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~-~F~ 297 (387)
|++++.-... . ..+.-+++++.+.++|||||.+++ ...++.+.+++..+++ -|.
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-----V~r~erl~ei~~~l~~~~~~ 188 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-----VHRPERLAEIIELLKSYNLE 188 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-----EecHHHHHHHHHHHHhcCCC
Confidence 9997652111 1 012336799999999999999985 3456677888888887 343
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.37 E-value=3.1e-11 Score=112.99 Aligned_cols=115 Identities=12% Similarity=0.198 Sum_probs=87.5
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 225 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~ 225 (387)
.+++..+.. ++..+|||||||+|..+..++++ ++..+|+++|+++.+++.+++.+... ..++++++.+|+.+
T Consensus 35 ~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 35 KDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAME 107 (231)
T ss_pred HHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhc
Confidence 455555432 45679999999999999999986 34569999999999999999987643 22579999999876
Q ss_pred HHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 226 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 226 ~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+. .++++||+|+++......+. ...+++.+.+.|+|||.+++.
T Consensus 108 ~~--~~~~~fD~V~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 108 LP--FDDNSFDYVTIGFGLRNVPD----YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CC--CCCCCccEEEEecccccCCC----HHHHHHHHHHHcCcCeEEEEE
Confidence 42 23568999998654322221 246899999999999998864
No 21
>PLN02476 O-methyltransferase
Probab=99.36 E-value=2.7e-11 Score=117.18 Aligned_cols=105 Identities=23% Similarity=0.372 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC----CCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV----PRG 233 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~----~~~ 233 (387)
.++++||+||+++|..+..+++. ++..+|+.+|+|++..+.|++++... ++. .+++++.+|+.+.|++. ..+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--Gl~-~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--GVS-HKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCC-CcEEEEEcCHHHHHHHHHhcccCC
Confidence 57899999999999999999875 33568999999999999999999876 444 59999999999988653 135
Q ss_pred CeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 234 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 234 ~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+||+|++|..... ..++|+.+.+.|+|||++++
T Consensus 194 ~FD~VFIDa~K~~-------Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 194 SYDFAFVDADKRM-------YQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCCEEEECCCHHH-------HHHHHHHHHHhcCCCcEEEE
Confidence 8999999986422 34689999999999999885
No 22
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.35 E-value=1.4e-11 Score=115.13 Aligned_cols=105 Identities=23% Similarity=0.421 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCC-CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE-cchhhHHhhCCCCCee
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~-~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~-gD~~~~l~~~~~~~fD 236 (387)
.++++||+||++.|..+..++..-+ ..+++.||+|++.++.|++++.+. ++ +++++++. +|+.+.+.....+.||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a--g~-~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA--GV-DDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc--CC-cceEEEEecCcHHHHHHhccCCCcc
Confidence 5899999999999999999998754 679999999999999999999876 33 44699999 6999998763357999
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+|++|+.-... ++||+.+.+.|+|||++++
T Consensus 135 liFIDadK~~y-------p~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 135 LVFIDADKADY-------PEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEEeCChhhC-------HHHHHHHHHHhCCCcEEEE
Confidence 99999865443 4699999999999999985
No 23
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.35 E-value=3.8e-12 Score=118.25 Aligned_cols=105 Identities=27% Similarity=0.456 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC----CCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV----PRG 233 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~----~~~ 233 (387)
.+|++||+||++.|..+..+++. ++..+|+.||+|++..+.|++++... +++ .+++++.+|+.+++... +.+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a--g~~-~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA--GLD-DRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT--TGG-GGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc--CCC-CcEEEEEeccHhhHHHHHhccCCC
Confidence 57899999999999999999986 44579999999999999999999765 333 59999999999988653 125
Q ss_pred CeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 234 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 234 ~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+||+|++|..-. ...++|+.+.+.|+|||++++
T Consensus 121 ~fD~VFiDa~K~-------~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 121 QFDFVFIDADKR-------NYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp SEEEEEEESTGG-------GHHHHHHHHHHHEEEEEEEEE
T ss_pred ceeEEEEccccc-------chhhHHHHHhhhccCCeEEEE
Confidence 799999998521 134689999999999999986
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.35 E-value=6.6e-12 Score=110.39 Aligned_cols=108 Identities=27% Similarity=0.345 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCcccHHHHHHH-hcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREIS-RHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~-k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+..+|||+|||+|.++..++ +..+..++++||+++++++.|++.+.... -++++++++|..+ +...-.++||+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~-l~~~~~~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIED-LPQELEEKFDI 76 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTC-GCGCSSTTEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhc-cccccCCCeeE
Confidence 356799999999999999999 55667899999999999999999876552 2489999999998 54311168999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+++....... ....+++.+.+.|+++|++++..
T Consensus 77 I~~~~~l~~~~----~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 77 IISNGVLHHFP----DPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp EEEESTGGGTS----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcCchhhcc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 99886542211 12368999999999999998654
No 25
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.34 E-value=3.4e-11 Score=109.75 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=81.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
++.+|||||||+|.++..+++..+..+|++||+|+.+++.++++.... ++ ++++++.+|+.++. ..++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~--~~--~~i~~i~~d~~~~~---~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL--GL--NNVEIVNGRAEDFQ---HEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh--CC--CCeEEEecchhhcc---ccCCccEEE
Confidence 478999999999999999887766678999999999999999887654 22 36999999998752 246899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
++.. .. -.++++.+.+.|+|||++++..
T Consensus 115 s~~~---~~-----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRAL---AS-----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehhh---hC-----HHHHHHHHHHhcCCCCEEEEEc
Confidence 8751 11 2358899999999999999753
No 26
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.34 E-value=1.5e-11 Score=102.94 Aligned_cols=105 Identities=20% Similarity=0.261 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
....+|||||||.|..+..+++..+..+|+++|+++.+++.+++++... ..++++++.+|+...+... .++||+|
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~D~v 92 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----GVSNIVIVEGDAPEALEDS-LPEPDRV 92 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----CCCceEEEeccccccChhh-cCCCCEE
Confidence 3456999999999999999998765579999999999999999987654 2347899999977544332 3589999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+++.... . ..++++.+++.|+|||.+++..
T Consensus 93 ~~~~~~~------~-~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 93 FIGGSGG------L-LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EECCcch------h-HHHHHHHHHHHcCCCCEEEEEe
Confidence 9865321 1 2478999999999999998753
No 27
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.34 E-value=2.7e-11 Score=122.98 Aligned_cols=128 Identities=19% Similarity=0.249 Sum_probs=95.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC--CCCCee
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~--~~~~fD 236 (387)
.+.++|||+|||+|+++..++.. +..+|++||+|+.+++.+++++..+ +++..+++++.+|+++++++. ..++||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~N--gl~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELN--KLDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc--CCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 35689999999999999887765 3569999999999999999998765 333358999999999998653 245899
Q ss_pred EEEEcCCCCCCCccccc-----hHHHHHHHHHhccCCCeEEecccccchhhhHHHHHH
Q 016578 237 AIIVDSSDPVGPAQELV-----EKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMI 289 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~-----~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~ 289 (387)
+||+|++.-......++ -.++++.+.+.|+|||++++-+.|.....+.+.+++
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v 353 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKII 353 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHH
Confidence 99999875222111111 234667788999999999976666666554444433
No 28
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.33 E-value=4e-11 Score=113.58 Aligned_cols=105 Identities=23% Similarity=0.361 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC----CCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV----PRG 233 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~----~~~ 233 (387)
.++++||+||+|+|..+..+++. ++..+|+.+|+|++.++.|++++... +++ .+++++.+|+.+.+... +.+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--gl~-~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--GVD-HKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCC-CcEEEEEccHHHHHHHHHhCCCCC
Confidence 56889999999999999988875 44579999999999999999999766 344 58999999999987642 135
Q ss_pred CeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 234 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 234 ~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+||+|++|...+. ..++++.+.+.|+|||++++
T Consensus 144 ~fD~VfiDa~k~~-------y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 144 EFDFAFVDADKPN-------YVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCEEEECCCHHH-------HHHHHHHHHHhcCCCeEEEE
Confidence 8999999975322 23589999999999999885
No 29
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.31 E-value=1.8e-11 Score=123.29 Aligned_cols=137 Identities=16% Similarity=0.213 Sum_probs=99.2
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
.-++.++|. ....+|||||||+|.++..+++..+..+|++||+|+.+++.|++++...... ...+++++.+|+...
T Consensus 218 rllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 218 RFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEcccccc
Confidence 446777764 2246999999999999999998877789999999999999999987644210 124789999998664
Q ss_pred HhhCCCCCeeEEEEcCCCCCCCc-cccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcC
Q 016578 227 LRQVPRGKYDAIIVDSSDPVGPA-QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 297 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~dp~~~~-~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~ 297 (387)
+ ++++||+|+++++.+.+.. ..-....+|+.++++|+|||.+.+.... +. .....+++.|.
T Consensus 294 ~---~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr---~l----~y~~~L~~~fg 355 (378)
T PRK15001 294 V---EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR---HL----DYFHKLKKIFG 355 (378)
T ss_pred C---CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec---Cc----CHHHHHHHHcC
Confidence 3 2458999999987654321 1112356899999999999998865321 11 23355666887
No 30
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.31 E-value=1.2e-11 Score=113.99 Aligned_cols=115 Identities=18% Similarity=0.315 Sum_probs=98.1
Q ss_pred HHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh
Q 016578 146 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 225 (387)
Q Consensus 146 Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~ 225 (387)
..+.++++|+ ..+.+|.|||||.|..+..+++..+...|+++|-|++|++.|++.++ ++++..+|.+.
T Consensus 19 a~dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp---------~~~f~~aDl~~ 86 (257)
T COG4106 19 ARDLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP---------DATFEEADLRT 86 (257)
T ss_pred HHHHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC---------CCceecccHhh
Confidence 4678899987 47889999999999999999999899999999999999999999875 67899999998
Q ss_pred HHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccc
Q 016578 226 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 226 ~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
|- ++...|+|+.++...+-|. -.+.|..+...|+|||++.+|...-+
T Consensus 87 w~---p~~~~dllfaNAvlqWlpd----H~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 87 WK---PEQPTDLLFANAVLQWLPD----HPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred cC---CCCccchhhhhhhhhhccc----cHHHHHHHHHhhCCCceEEEECCCcc
Confidence 83 3568999999987766552 23578999999999999999985533
No 31
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.31 E-value=3.9e-11 Score=116.79 Aligned_cols=111 Identities=21% Similarity=0.234 Sum_probs=85.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
++.+|||+|||+|.++..++++.+..+|+++|+|+.+++.|++++... ++ +.+++++.+|+.+.+. +++||+|+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--~~-~~~i~~~~~D~~~~~~---~~~fD~Iv 194 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--GL-EDRVTLIQSDLFAALP---GRKYDLIV 194 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CC-CCcEEEEECchhhccC---CCCccEEE
Confidence 457999999999999999998866679999999999999999998654 22 2489999999876542 35799999
Q ss_pred EcCCCCCC-------------Cccc--------cchHHHHHHHHHhccCCCeEEeccc
Q 016578 240 VDSSDPVG-------------PAQE--------LVEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 240 ~D~~dp~~-------------~~~~--------L~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
+|++.-.. |... -+...+++.+.+.|+|||++++..+
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 98653110 0000 1235678889999999999997654
No 32
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=5e-11 Score=112.83 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..+.+|||||||+|-++..+++..+..+|+++|+++.|++.+++.+.... . ..++++.+|+.+.. .++++||+|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~--~--~~i~fv~~dAe~LP--f~D~sFD~v 123 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG--V--QNVEFVVGDAENLP--FPDNSFDAV 123 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC--c--cceEEEEechhhCC--CCCCccCEE
Confidence 36789999999999999999998767899999999999999999987541 1 23999999998753 568899999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
.+...-..-+. ....+++++|+|||||++++.
T Consensus 124 t~~fglrnv~d----~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 124 TISFGLRNVTD----IDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred EeeehhhcCCC----HHHHHHHHHHhhcCCeEEEEE
Confidence 98754332221 345899999999999988764
No 33
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.30 E-value=2.6e-11 Score=115.56 Aligned_cols=102 Identities=20% Similarity=0.296 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.++.+|||||||+|.++..+++..+..+|++||+++.+++.+++++ ++++++.+|+..+. ..++||+|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~---~~~~fD~v 97 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ---PPQALDLI 97 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC---CCCCccEE
Confidence 4567999999999999999998766679999999999999999875 35789999987663 24589999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
+++....+.+. ...+++.+.++|+|||+++++..
T Consensus 98 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 98 FANASLQWLPD----HLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEccChhhCCC----HHHHHHHHHHhcCCCcEEEEECC
Confidence 98876544331 34689999999999999998653
No 34
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.30 E-value=4e-11 Score=120.70 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=96.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
....+||||||+|..+..+++..+...++++|+++.+++.+.+..... ++ +++.++.+|+..++...+++++|.|+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~--gL--~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL--NL--KNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CC--CcEEEEECCHHHhhhhCCCCceeEEE
Confidence 345899999999999999999877789999999999999998887543 22 47999999998876555677999999
Q ss_pred EcCCCCCCCc--cccchHHHHHHHHHhccCCCeEEecccccc
Q 016578 240 VDSSDPVGPA--QELVEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 240 ~D~~dp~~~~--~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
+..++||... ..+.+.+|++.++++|+|||.+.+.+++..
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 9999987432 346678999999999999999998776543
No 35
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.30 E-value=1.3e-11 Score=98.11 Aligned_cols=95 Identities=20% Similarity=0.346 Sum_probs=74.9
Q ss_pred EEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCC
Q 016578 165 LVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD 244 (387)
Q Consensus 165 L~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~d 244 (387)
||||||+|..+..++++ +..+|+++|+++++++.+++.... .+++++.+|..++ ..++++||+|++...-
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-------~~~~~~~~d~~~l--~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-------EGVSFRQGDAEDL--PFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT-------STEEEEESBTTSS--SS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc-------cCchheeehHHhC--ccccccccccccccce
Confidence 89999999999999999 568999999999999999998753 4677999998776 3346799999976544
Q ss_pred CCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 245 PVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 245 p~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
.... -...+++.++|.|||||++++
T Consensus 71 ~~~~----~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLE----DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSS----HHHHHHHHHHHHEEEEEEEEE
T ss_pred eecc----CHHHHHHHHHHHcCcCeEEeC
Confidence 3221 145699999999999999874
No 36
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.29 E-value=7.9e-11 Score=107.94 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
+.+.+|||||||+|..+..+++..+..+|++||+++.+++.++++.... ++ ++++++.+|+.++.. .++||+|
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~--~l--~~i~~~~~d~~~~~~---~~~fDlV 116 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL--GL--KNVTVVHGRAEEFGQ---EEKFDVV 116 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc--CC--CCEEEEeccHhhCCC---CCCccEE
Confidence 4478999999999999999987656689999999999999999987665 22 349999999987532 4589999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+++... . -.++++.+++.|+|||++++..
T Consensus 117 ~~~~~~---~-----~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 117 TSRAVA---S-----LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEcccc---C-----HHHHHHHHHHhcCCCeEEEEEe
Confidence 987531 1 2468999999999999998753
No 37
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.28 E-value=3.4e-11 Score=114.64 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHh--cCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 159 PSPKTVLVVGGGDGGVLREISR--HDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k--~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
++..+|||||||+|..+..+++ ..+..+|++||+++.+++.|++++..... ..+++++.+|+.+.. ...+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~---~~~v~~~~~d~~~~~----~~~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA---PTPVDVIEGDIRDIA----IENAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC---CCCeEEEeCChhhCC----CCCCC
Confidence 4567999999999999998887 34567999999999999999999865421 348999999987642 23599
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+|++.......+.. ....+++.+++.|+|||.+++.
T Consensus 128 ~vv~~~~l~~l~~~--~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 128 MVVLNFTLQFLEPS--ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred EEehhhHHHhCCHH--HHHHHHHHHHHhcCCCCEEEEE
Confidence 99976443222211 1356899999999999999874
No 38
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.28 E-value=1e-10 Score=106.48 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+..+|||||||+|.++..+++..+..+|+++|+++.+++.+++++.... + ++++++.+|+...+ .++||+|
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~--~--~~i~~~~~d~~~~~----~~~~D~v 101 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG--C--GNIDIIPGEAPIEL----PGKADAI 101 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC--C--CCeEEEecCchhhc----CcCCCEE
Confidence 46779999999999999999987666799999999999999999876542 1 46999999975332 3579999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHH
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET 295 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~ 295 (387)
+++.... ...++++.+.+.|+|||++++... .......+.+.+++.
T Consensus 102 ~~~~~~~-------~~~~~l~~~~~~Lk~gG~lv~~~~----~~~~~~~~~~~l~~~ 147 (187)
T PRK08287 102 FIGGSGG-------NLTAIIDWSLAHLHPGGRLVLTFI----LLENLHSALAHLEKC 147 (187)
T ss_pred EECCCcc-------CHHHHHHHHHHhcCCCeEEEEEEe----cHhhHHHHHHHHHHC
Confidence 9875321 124689999999999999987431 122234455555543
No 39
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.27 E-value=4.4e-11 Score=119.33 Aligned_cols=117 Identities=18% Similarity=0.267 Sum_probs=88.8
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
.-++.+++. ....+|||||||+|.++..+++..+..+|+++|+|+.+++.+++++... ....+++.+|+...
T Consensus 186 ~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-----~l~~~~~~~D~~~~ 257 (342)
T PRK09489 186 QLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-----GLEGEVFASNVFSD 257 (342)
T ss_pred HHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCEEEEcccccc
Confidence 344555543 2345899999999999999999876679999999999999999988754 12357788887654
Q ss_pred HhhCCCCCeeEEEEcCCCCCCCcc-ccchHHHHHHHHHhccCCCeEEecc
Q 016578 227 LRQVPRGKYDAIIVDSSDPVGPAQ-ELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~dp~~~~~-~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+ +++||+||++.+.+.+... .-....+++.+.+.|+|||.+.+.+
T Consensus 258 ~----~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 258 I----KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred c----CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 2 4689999998876544321 1124679999999999999987654
No 40
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.26 E-value=4.8e-11 Score=113.97 Aligned_cols=115 Identities=23% Similarity=0.389 Sum_probs=87.1
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
.+++..++ +.+.+|||||||+|..+..+++.. .+|++||+++++++.|+++.... ++ .++++++.+|+.+.
T Consensus 35 ~~~l~~l~----~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~--g~-~~~v~~~~~d~~~l 105 (255)
T PRK11036 35 DRLLAELP----PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAK--GV-SDNMQFIHCAAQDI 105 (255)
T ss_pred HHHHHhcC----CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc--CC-ccceEEEEcCHHHH
Confidence 34555543 456799999999999999999874 68999999999999999987654 11 35899999999875
Q ss_pred HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 227 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
... .+++||+|++...-..... ...+++.+.+.|+|||++++..
T Consensus 106 ~~~-~~~~fD~V~~~~vl~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 106 AQH-LETPVDLILFHAVLEWVAD----PKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hhh-cCCCCCEEEehhHHHhhCC----HHHHHHHHHHHcCCCeEEEEEE
Confidence 322 3568999997644221111 2368999999999999998643
No 41
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.26 E-value=1.8e-11 Score=115.88 Aligned_cols=106 Identities=23% Similarity=0.337 Sum_probs=74.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.++.+|||+|||+|.+++.++++ .+..+|+++|+++.|++.|++.+.... ..+++++.+|+.+.- .++++||+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~lp--~~d~sfD~ 119 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAEDLP--FPDNSFDA 119 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB----S-TT-EEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHHhc--CCCCceeE
Confidence 45779999999999999999987 345699999999999999999887541 248999999998752 34679999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|++...-...+. ....+++++|+|||||.+++.
T Consensus 120 v~~~fglrn~~d----~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 120 VTCSFGLRNFPD----RERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp EEEES-GGG-SS----HHHHHHHHHHHEEEEEEEEEE
T ss_pred EEHHhhHHhhCC----HHHHHHHHHHHcCCCeEEEEe
Confidence 997653222121 345899999999999998864
No 42
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=3.1e-11 Score=116.48 Aligned_cols=106 Identities=21% Similarity=0.322 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 158 IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 158 ~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
..+..+|||||||.|++++.++++. ..+|++|++|++..+.+++.+... +++ .+++++..|-+++ .++||-
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~--gl~-~~v~v~l~d~rd~-----~e~fDr 140 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR--GLE-DNVEVRLQDYRDF-----EEPFDR 140 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc--CCC-cccEEEecccccc-----ccccce
Confidence 3677899999999999999999987 469999999999999999988765 444 4899999997665 346999
Q ss_pred EEE-cCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~-D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|++ ..+.+.+... -.+||+.+++.|+|||++++++
T Consensus 141 IvSvgmfEhvg~~~---~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 141 IVSVGMFEHVGKEN---YDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred eeehhhHHHhCccc---HHHHHHHHHhhcCCCceEEEEE
Confidence 994 4555555422 4679999999999999999875
No 43
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.25 E-value=5.5e-11 Score=113.53 Aligned_cols=99 Identities=16% Similarity=0.299 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..+.+|||||||+|.+++.+++..+..+|+++|+++.+++.|++. +++++.+|+.++. ..++||+|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~---~~~~fD~v 93 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK---PKPDTDVV 93 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC---CCCCceEE
Confidence 467899999999999999999875567999999999999999762 4678899987653 24689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
++...-++.+. ...+++.++++|+|||.++++.
T Consensus 94 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 94 VSNAALQWVPE----HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEehhhhhCCC----HHHHHHHHHHhCCCCcEEEEEc
Confidence 98765444331 2568999999999999998764
No 44
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.22 E-value=2e-10 Score=105.70 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
....+|||+|||+|.++.++++. .+..+|+++|+++.+++.+++++..+. + ..+++++.+|+.+++... .+.||.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~-~~~v~~~~~d~~~~l~~~-~~~~D~ 114 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--V-LNNIVLIKGEAPEILFTI-NEKFDR 114 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--C-CCCeEEEEechhhhHhhc-CCCCCE
Confidence 45679999999999999999875 345699999999999999999876542 1 257999999998877543 358999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHH
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET 295 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~ 295 (387)
|+++.... ...++++.+.+.|+|||.+++... ....+..+.+.+++.
T Consensus 115 V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 115 IFIGGGSE-------KLKEIISASWEIIKKGGRIVIDAI----LLETVNNALSALENI 161 (198)
T ss_pred EEECCCcc-------cHHHHHHHHHHHcCCCcEEEEEee----cHHHHHHHHHHHHHc
Confidence 99864211 124689999999999999986432 233455666666543
No 45
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=9.3e-11 Score=113.60 Aligned_cols=147 Identities=20% Similarity=0.313 Sum_probs=105.0
Q ss_pred EcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCC
Q 016578 132 LDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGF 211 (387)
Q Consensus 132 lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~ 211 (387)
+-|+....+-|- --+-.+.+++. ....+|||+|||.|.++..+++..+..+|++||+|...++.||+++..+..
T Consensus 134 ~pGVFS~~~lD~-GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~-- 207 (300)
T COG2813 134 LPGVFSRDKLDK-GSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV-- 207 (300)
T ss_pred CCCCCcCCCcCh-HHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC--
Confidence 345544443342 23556666765 223499999999999999999998889999999999999999999876521
Q ss_pred CCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCc-cccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHH
Q 016578 212 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPA-QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMIS 290 (387)
Q Consensus 212 ~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~-~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~ 290 (387)
+ +.+++..|..+-+ .++||+||++++.+.+.. ..-...++++..+++|++||-|.+.+... .....
T Consensus 208 ~--~~~v~~s~~~~~v----~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~-------l~y~~ 274 (300)
T COG2813 208 E--NTEVWASNLYEPV----EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH-------LPYEK 274 (300)
T ss_pred C--ccEEEEecccccc----cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC-------CChHH
Confidence 2 2278888876544 348999999988776542 22234579999999999999775433211 12345
Q ss_pred HHHHHcC
Q 016578 291 ICRETFK 297 (387)
Q Consensus 291 ~l~~~F~ 297 (387)
.|+++|.
T Consensus 275 ~L~~~Fg 281 (300)
T COG2813 275 KLKELFG 281 (300)
T ss_pred HHHHhcC
Confidence 6778888
No 46
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.22 E-value=3.2e-11 Score=98.77 Aligned_cols=96 Identities=29% Similarity=0.497 Sum_probs=72.3
Q ss_pred EEEEcCcccHHHHHHHhcC---CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEE
Q 016578 164 VLVVGGGDGGVLREISRHD---SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 240 (387)
Q Consensus 164 VL~IG~G~G~~~~el~k~~---~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~ 240 (387)
|||+|||+|..++.+++.. +..++++||+|+++++.+++++... ..+++++++|+.++-.. +++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l~~~--~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDLPFS--DGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCHHHH--SSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHCccc--CCCeeEEEE
Confidence 7999999999999999874 3379999999999999999998653 35899999999885432 569999998
Q ss_pred -cC-CCCCCCccccchHHHHHHHHHhccCCC
Q 016578 241 -DS-SDPVGPAQELVEKPFFDTIAKALRPGG 269 (387)
Q Consensus 241 -D~-~dp~~~~~~L~~~ef~~~l~~~LkpgG 269 (387)
.. .....+ . -...+++.+.++|+|||
T Consensus 74 ~~~~~~~~~~-~--~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSP-E--ELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSH-H--HHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCH-H--HHHHHHHHHHHHhCCCC
Confidence 33 222221 1 13568999999999998
No 47
>PLN02244 tocopherol O-methyltransferase
Probab=99.22 E-value=1.3e-10 Score=115.85 Aligned_cols=106 Identities=21% Similarity=0.348 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.++.+|||||||+|.+++.+++.. ..+|++||+++.+++.+++..... ++ .++++++.+|+.+.. .++++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~--g~-~~~v~~~~~D~~~~~--~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ--GL-SDKVSFQVADALNQP--FEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc--CC-CCceEEEEcCcccCC--CCCCCccEE
Confidence 456799999999999999999865 469999999999999999876543 11 357999999987642 235789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
++.......+. ...+++.++++|+|||.|++.
T Consensus 191 ~s~~~~~h~~d----~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 191 WSMESGEHMPD----KRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred EECCchhccCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 97543222111 346999999999999998864
No 48
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.22 E-value=1.3e-10 Score=111.77 Aligned_cols=109 Identities=16% Similarity=0.089 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
++..+|||||||+|.++..++++ ++..+|+++|++++|++.|++..+..... ..++++++.+|+.+.. .++++||+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~lp--~~~~sfD~ 148 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDLP--FDDCYFDA 148 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccCC--CCCCCEeE
Confidence 45679999999999999998876 34469999999999999999875421110 1358999999987642 34568999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|++...-...+ -...++++++++|||||.+++.
T Consensus 149 V~~~~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 149 ITMGYGLRNVV----DRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EEEecccccCC----CHHHHHHHHHHHcCcCcEEEEE
Confidence 99764432222 1346899999999999998764
No 49
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=2.8e-10 Score=111.99 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=84.6
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 240 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~ 240 (387)
+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++.... + ..+++++.+|..+.+. +++||+|++
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~--l-~~~i~~~~~D~~~~l~---~~~fDlIvs 207 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG--L-EDRVTLIESDLFAALP---GRRYDLIVS 207 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--C-CCcEEEEECchhhhCC---CCCccEEEE
Confidence 379999999999999999988667899999999999999999986542 2 2479999999877652 357999999
Q ss_pred cCCCCC-------------CCcccc--------chHHHHHHHHHhccCCCeEEecc
Q 016578 241 DSSDPV-------------GPAQEL--------VEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 241 D~~dp~-------------~~~~~L--------~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|++.-. .|...| +...+++.+.+.|+|||.+++..
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 865311 011111 23567889999999999999754
No 50
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.21 E-value=3.1e-10 Score=108.63 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=82.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
.+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++... .++++.+|..+++.....++||+|+
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEE
Confidence 345899999999999999988755579999999999999999998643 2478999988766432235799999
Q ss_pred EcCCC-CCC-----Cc--------ccc--------chHHHHHHHHHhccCCCeEEecc
Q 016578 240 VDSSD-PVG-----PA--------QEL--------VEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 240 ~D~~d-p~~-----~~--------~~L--------~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|++. +.. ++ ..+ +...+++.+.+.|+|||++++..
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99764 211 00 011 13467888889999999998643
No 51
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.20 E-value=1.6e-10 Score=116.68 Aligned_cols=126 Identities=21% Similarity=0.320 Sum_probs=99.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC--CCCCeeE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDA 237 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~--~~~~fDv 237 (387)
+.++||++-|-||+.+..++.-+ ..+||.||+|...++.|++++..+ +++..+++++++|+++|++.. ...+||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LN--g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELN--GLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhc--CCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 48899999999999999999874 569999999999999999998776 566778999999999999865 2358999
Q ss_pred EEEcCCCCCCCccccch-----HHHHHHHHHhccCCCeEEecccccchhhhHHHHH
Q 016578 238 IIVDSSDPVGPAQELVE-----KPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 288 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~-----~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~ 288 (387)
||+|++.-......++. .+....+.+.|+|||++++.+.+.....+.+..+
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~ 349 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEI 349 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHH
Confidence 99998753222222222 3467788999999999998776666665554444
No 52
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.20 E-value=1.4e-10 Score=108.14 Aligned_cols=111 Identities=21% Similarity=0.230 Sum_probs=84.1
Q ss_pred HHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcch
Q 016578 145 AYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA 223 (387)
Q Consensus 145 ~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~ 223 (387)
.+..|+..+.+ .+..+|||||||+|..+..+++.. ...+|+++|+++++++.+++++.... -.+++++.+|+
T Consensus 64 ~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~ 136 (212)
T PRK13942 64 MVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDG 136 (212)
T ss_pred HHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCc
Confidence 35556655543 456799999999999999888763 34699999999999999999987552 24799999998
Q ss_pred hhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 224 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 224 ~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
..... ..+.||+|+++..-+. ..+.+.+.|+|||+|++.
T Consensus 137 ~~~~~--~~~~fD~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 137 TLGYE--ENAPYDRIYVTAAGPD----------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ccCCC--cCCCcCEEEECCCccc----------chHHHHHhhCCCcEEEEE
Confidence 76543 2468999998764321 234567789999999874
No 53
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.20 E-value=2.4e-10 Score=103.68 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=96.8
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 158 IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 158 ~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
..+..+++|||||+|+++.+++...+..+|+++|-|++.++..+++...+. -++++++.+|+-+.+.+. .++|.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap~~L~~~--~~~da 105 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAPEALPDL--PSPDA 105 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccchHhhcCC--CCCCE
Confidence 345679999999999999999987888999999999999999999988763 479999999999998754 27999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHH
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET 295 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~ 295 (387)
|++...- . -.+.++.+..+|+|||.++.++-. .+.....++.+++.
T Consensus 106 iFIGGg~---~-----i~~ile~~~~~l~~ggrlV~nait----lE~~~~a~~~~~~~ 151 (187)
T COG2242 106 IFIGGGG---N-----IEEILEAAWERLKPGGRLVANAIT----LETLAKALEALEQL 151 (187)
T ss_pred EEECCCC---C-----HHHHHHHHHHHcCcCCeEEEEeec----HHHHHHHHHHHHHc
Confidence 9987652 1 346899999999999999987633 23344455555543
No 54
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.20 E-value=7.1e-11 Score=114.38 Aligned_cols=107 Identities=24% Similarity=0.396 Sum_probs=78.0
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 157 SIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 157 ~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
...+..+|||||||.|+++..+++..+ .+|++|.+|++..+.+++.+... ++. .++++..+|.+++ +.+||
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~--gl~-~~v~v~~~D~~~~-----~~~fD 129 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREA--GLE-DRVEVRLQDYRDL-----PGKFD 129 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS--TSS-STEEEEES-GGG--------S-S
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhc--CCC-CceEEEEeecccc-----CCCCC
Confidence 346677999999999999999999853 59999999999999999988765 333 4899999997654 34899
Q ss_pred EEEE-cCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~-D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.|++ ....+.++. ....||+.+.+.|+|||++++|.
T Consensus 130 ~IvSi~~~Ehvg~~---~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 130 RIVSIEMFEHVGRK---NYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEEEESEGGGTCGG---GHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEEEEechhhcChh---HHHHHHHHHHHhcCCCcEEEEEe
Confidence 9994 344444332 24579999999999999999875
No 55
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.20 E-value=1.5e-10 Score=107.86 Aligned_cols=111 Identities=21% Similarity=0.262 Sum_probs=84.5
Q ss_pred HHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCC-CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchh
Q 016578 146 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV 224 (387)
Q Consensus 146 Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~-~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~ 224 (387)
+..|+..+. .....+|||||||+|..+..+++..+ ..+|++||+++.+++.|++++... + -.+++++.+|+.
T Consensus 66 ~~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~--g--~~~v~~~~~d~~ 138 (215)
T TIGR00080 66 VAMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL--G--LDNVIVIVGDGT 138 (215)
T ss_pred HHHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC--C--CCCeEEEECCcc
Confidence 455655553 24567999999999999999988743 346999999999999999998765 2 247999999997
Q ss_pred hHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 225 EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 225 ~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+.+.. .+.||+|+++...+. ..+.+.+.|+|||++++..
T Consensus 139 ~~~~~--~~~fD~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 139 QGWEP--LAPYDRIYVTAAGPK----------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCcc--cCCCCEEEEcCCccc----------ccHHHHHhcCcCcEEEEEE
Confidence 65432 358999998864322 2345778999999998743
No 56
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.20 E-value=5.8e-10 Score=113.19 Aligned_cols=150 Identities=19% Similarity=0.309 Sum_probs=101.3
Q ss_pred CCCeeEEEEEecCceeEEEEcCeEeecccchhHHHH-HHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEe
Q 016578 113 SEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQE-MIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICE 191 (387)
Q Consensus 113 S~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~e-ml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VE 191 (387)
-|.|.|.=... .+|..+.++-..-...++....-+ .+.. .++..+|||||||+|.++..+++..+..+|+++|
T Consensus 209 ePlqYIlG~~~-F~G~~f~V~p~vLIPRpeTE~LVe~aL~~-----l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVD 282 (423)
T PRK14966 209 EPVAYILGVRE-FYGRRFAVNPNVLIPRPETEHLVEAVLAR-----LPENGRVWDLGTGSGAVAVTVALERPDAFVRASD 282 (423)
T ss_pred CCceeEeeeee-ecCcEEEeCCCccCCCccHHHHHHHhhhc-----cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEE
Confidence 57888776643 467777776433333333222222 2222 2345699999999999999998876667999999
Q ss_pred CCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCC-CCC------------Ccccc------
Q 016578 192 IDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVG------------PAQEL------ 252 (387)
Q Consensus 192 iD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~d-p~~------------~~~~L------ 252 (387)
+|+.+++.|++++... ..+++++.+|.++.... ..++||+|++|++. +.. |...|
T Consensus 283 iS~~ALe~AreNa~~~-----g~rV~fi~gDl~e~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dG 356 (423)
T PRK14966 283 ISPPALETARKNAADL-----GARVEFAHGSWFDTDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDG 356 (423)
T ss_pred CCHHHHHHHHHHHHHc-----CCcEEEEEcchhccccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCch
Confidence 9999999999998654 23799999998654211 13579999998764 111 00011
Q ss_pred --chHHHHHHHHHhccCCCeEEec
Q 016578 253 --VEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 253 --~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+.+.+++.+.+.|+|||.+++.
T Consensus 357 L~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 357 LSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1235666777899999998863
No 57
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.19 E-value=3.1e-10 Score=107.26 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
++..+|||||||+|..+..++++. +..+++++|+++.+++.|++++.... ...+++++.+|+.++. ...+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~----~~~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE----IKNAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC----CCCCC
Confidence 456699999999999999998852 46799999999999999999876431 1357999999987652 23589
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+|++....+..+... ...+++.++++|+|||.+++.
T Consensus 125 ~v~~~~~l~~~~~~~--~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 125 MVILNFTLQFLPPED--RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred EEeeecchhhCCHHH--HHHHHHHHHHhcCCCeEEEEe
Confidence 988765543332111 346899999999999999874
No 58
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.19 E-value=1.7e-10 Score=106.23 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=82.7
Q ss_pred HHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHH
Q 016578 148 EMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL 227 (387)
Q Consensus 148 eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l 227 (387)
+++..++. ..+.+|||+|||+|..+..++++. .+|+++|+++.+++.+++..... + -.+++++..|..++-
T Consensus 21 ~l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~~--~--~~~v~~~~~d~~~~~ 91 (197)
T PRK11207 21 EVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAAE--N--LDNLHTAVVDLNNLT 91 (197)
T ss_pred HHHHhccc---CCCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHc--C--CCcceEEecChhhCC
Confidence 44444443 346799999999999999999874 59999999999999999886543 1 235889999976642
Q ss_pred hhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 228 RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 228 ~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
. +++||+|++.......+.. -...+++.++++|+|||++++
T Consensus 92 --~-~~~fD~I~~~~~~~~~~~~--~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 92 --F-DGEYDFILSTVVLMFLEAK--TIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred --c-CCCcCEEEEecchhhCCHH--HHHHHHHHHHHHcCCCcEEEE
Confidence 2 3579999976543222211 135699999999999998543
No 59
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.19 E-value=6.2e-10 Score=105.07 Aligned_cols=110 Identities=24% Similarity=0.346 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
+++.+|||+|||+|..+..+++..+..+++++|+++.+++.+++++.... -++++++.+|+.+.+ +.++||+|
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~---~~~~fD~V 158 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFEPL---PGGKFDLI 158 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhccC---cCCceeEE
Confidence 34569999999999999999987666799999999999999999876541 237999999987643 24689999
Q ss_pred EEcCCCCCCC-----ccc---------c--------chHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGP-----AQE---------L--------VEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~-----~~~---------L--------~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+++++..... ... + ....+++.+.+.|+|||.+++..
T Consensus 159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9986542110 000 0 11367889999999999998743
No 60
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.3e-10 Score=107.38 Aligned_cols=99 Identities=24% Similarity=0.367 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
....+||+||||+|..+..+++.. .+|+.+|+++...+.|+++|..+ ++ .+|.++++|+..-+.. ...||.|
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~l--g~--~nV~v~~gDG~~G~~~--~aPyD~I 142 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETL--GY--ENVTVRHGDGSKGWPE--EAPYDRI 142 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHc--CC--CceEEEECCcccCCCC--CCCcCEE
Confidence 566899999999999999999985 49999999999999999999876 33 3599999999887653 4689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
++...-+.-|. .+.+.|++||++++-.
T Consensus 143 ~Vtaaa~~vP~----------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 143 IVTAAAPEVPE----------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred EEeeccCCCCH----------HHHHhcccCCEEEEEE
Confidence 99887665552 5667899999999744
No 61
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=2.2e-10 Score=106.18 Aligned_cols=111 Identities=23% Similarity=0.236 Sum_probs=82.8
Q ss_pred HHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchh
Q 016578 146 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV 224 (387)
Q Consensus 146 Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~ 224 (387)
+..|+..+.. .+..+|||||||+|..+..+++.. ...+|+++|+++++++.|++++... ++ ..+++++.+|+.
T Consensus 61 ~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--~~-~~~v~~~~~d~~ 134 (205)
T PRK13944 61 VAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--GY-WGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEECCcc
Confidence 3445444432 345799999999999999988763 2458999999999999999988654 22 237999999998
Q ss_pred hHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 225 EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 225 ~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+.+.. ..+||+|+++..... +.+.+.+.|+|||+|++.
T Consensus 135 ~~~~~--~~~fD~Ii~~~~~~~----------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 135 RGLEK--HAPFDAIIVTAAAST----------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred cCCcc--CCCccEEEEccCcch----------hhHHHHHhcCcCcEEEEE
Confidence 75532 358999998865321 334677899999999863
No 62
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.19 E-value=3e-10 Score=108.44 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCC-----C
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP-----R 232 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~-----~ 232 (387)
.++++||+||++.|..+..+++. ++..+|+.+|+|++..+.|+++|... ++. .+++++.+|+.+.+.... .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~~-~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GVA-HKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCC-CceEEEeccHHHHHHHHHhccccC
Confidence 57889999999999999999875 44569999999999999999999765 443 599999999999987631 2
Q ss_pred CCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 233 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 233 ~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
++||+|++|..-.. ..++|+.+.+.|+|||++++
T Consensus 155 ~~fD~iFiDadK~~-------Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 155 GTFDFIFVDADKDN-------YINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CcccEEEecCCHHH-------hHHHHHHHHHhcCCCeEEEE
Confidence 58999999975322 34689999999999999985
No 63
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.19 E-value=2.8e-10 Score=104.44 Aligned_cols=105 Identities=21% Similarity=0.292 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
....+|||+|||+|.++.++++..+..+|+++|+|+++++.+++++.... -.+++++.+|+.+.+... ...+|.|
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~-~~~~d~v 113 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQL-APAPDRV 113 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhC-CCCCCEE
Confidence 45679999999999999999876556799999999999999999986542 247999999987755433 2357888
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
+++... . ..++++.+.+.|+|||.+++...
T Consensus 114 ~~~~~~---~-----~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 114 CIEGGR---P-----IKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEECCc---C-----HHHHHHHHHHhcCCCeEEEEEee
Confidence 876421 1 24689999999999999997653
No 64
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.18 E-value=3.3e-10 Score=102.43 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=80.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
++++|||+|||+|.++..+++... +|+++|+|+.+++.+++++... ..+++++.+|..+.. .++||+|+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~----~~~fD~Vi 87 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-----NVGLDVVMTDLFKGV----RGKFDVIL 87 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-----CCceEEEEccccccc----CCcccEEE
Confidence 457899999999999999998753 8999999999999999988643 346889999976643 34899999
Q ss_pred EcCCCCCCCc-----------------cccchHHHHHHHHHhccCCCeEEec
Q 016578 240 VDSSDPVGPA-----------------QELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 240 ~D~~dp~~~~-----------------~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
++.+....+. .......+++.+.+.|+|||.+++.
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 8865421110 0011356899999999999998764
No 65
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.18 E-value=1.7e-10 Score=106.34 Aligned_cols=124 Identities=28% Similarity=0.394 Sum_probs=95.6
Q ss_pred EEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCeeEEEEc
Q 016578 163 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDAIIVD 241 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fDvII~D 241 (387)
-+||||||.|..+.++++..+...+++||+....+..+.+..... .-+|+.++.+|+..++... ++++.|-|.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 789999999999999999888899999999999999888876654 2469999999999987654 35799999999
Q ss_pred CCCCCCC----ccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHH
Q 016578 242 SSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 294 (387)
Q Consensus 242 ~~dp~~~----~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~ 294 (387)
.+||+.- ...+.+.+|++.+.+.|+|||.+.+.+++. .+...+++.+.+
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~----~y~~~~~~~~~~ 148 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE----EYAEWMLEQFEE 148 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H----HHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH----HHHHHHHHHHHh
Confidence 9999854 356899999999999999999999877553 344555555554
No 66
>PRK14967 putative methyltransferase; Provisional
Probab=99.18 E-value=6.6e-10 Score=104.12 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+..+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++... ..+++++.+|..+.+. +++||+|
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~-----~~~~~~~~~d~~~~~~---~~~fD~V 105 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA-----GVDVDVRRGDWARAVE---FRPFDVV 105 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh-----CCeeEEEECchhhhcc---CCCeeEE
Confidence 345799999999999999998874 459999999999999999987644 2368899999877542 4689999
Q ss_pred EEcCCCCCCCcc-----------------ccchHHHHHHHHHhccCCCeEEec
Q 016578 239 IVDSSDPVGPAQ-----------------ELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 239 I~D~~dp~~~~~-----------------~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+++.+....... ......+++.+.+.|+|||++++.
T Consensus 106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 998653211100 011245788999999999998863
No 67
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.17 E-value=2.8e-10 Score=105.94 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..+.+|||||||+|..+..+++..+..+++++|+++.+++.+++.++ ++++++.+|..+.. .++++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~--~~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP--LEDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC--CCCCceeEE
Confidence 44679999999999999999998766789999999999999998764 37889999987653 235689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+++........ ...+++.+++.|+|||.+++..
T Consensus 103 i~~~~l~~~~~----~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDD----LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred EEhhhhhhccC----HHHHHHHHHHHcCCCcEEEEEe
Confidence 98754432211 2468999999999999998653
No 68
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.16 E-value=3.2e-10 Score=109.18 Aligned_cols=113 Identities=19% Similarity=0.331 Sum_probs=84.2
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
..++..+. .++..+|||||||+|..++.+++.. ..+|+++|+++.+++.+++.+.. .++++++.+|+.+.
T Consensus 42 ~~~l~~l~---l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 42 TKILSDIE---LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK 111 (263)
T ss_pred HHHHHhCC---CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC
Confidence 44554443 2566799999999999999998764 35899999999999999998653 35899999997642
Q ss_pred HhhCCCCCeeEEEEc-CCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 227 LRQVPRGKYDAIIVD-SSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 227 l~~~~~~~fDvII~D-~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
..++++||+|++. ...+..... ...+++.++++|+|||.+++.
T Consensus 112 --~~~~~~FD~V~s~~~l~h~~~~d---~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 112 --DFPENTFDMIYSRDAILHLSYAD---KKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred --CCCCCCeEEEEEhhhHHhCCHHH---HHHHHHHHHHHcCCCcEEEEE
Confidence 2235689999973 222221111 346899999999999999874
No 69
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.16 E-value=1.2e-09 Score=101.07 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=96.8
Q ss_pred EEEEEecCceeEEEE--cCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHH
Q 016578 118 VLVFESLAYGKVLVL--DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKM 195 (387)
Q Consensus 118 I~v~es~~~G~~L~l--DG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~ 195 (387)
+.|+-.+..|+.|.. +..... .. +..+..++..+.. .....+|||+|||+|.++.+++... ..+|++||+|+.
T Consensus 13 mrIi~g~~~g~~l~~~~~~~~Rp-~~-d~v~e~l~~~l~~--~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~ 87 (199)
T PRK10909 13 IRIIGGQWRGRKLPVPDSPGLRP-TT-DRVRETLFNWLAP--VIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA 87 (199)
T ss_pred EEEEeeccCCCEeCCCCCCCcCc-CC-HHHHHHHHHHHhh--hcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence 667766666776654 111211 11 2233444444321 1245699999999999999866554 469999999999
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHh--ccCCCeEEe
Q 016578 196 VIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA--LRPGGVLCN 273 (387)
Q Consensus 196 vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~--LkpgGvlv~ 273 (387)
.++.+++++.... + .+++++.+|+.+++... .+.||+|++|++...+. ..+.++.+.+. |+|+|++++
T Consensus 88 a~~~a~~Nl~~~~--~--~~v~~~~~D~~~~l~~~-~~~fDlV~~DPPy~~g~-----~~~~l~~l~~~~~l~~~~iv~v 157 (199)
T PRK10909 88 VAQQLIKNLATLK--A--GNARVVNTNALSFLAQP-GTPHNVVFVDPPFRKGL-----LEETINLLEDNGWLADEALIYV 157 (199)
T ss_pred HHHHHHHHHHHhC--C--CcEEEEEchHHHHHhhc-CCCceEEEECCCCCCCh-----HHHHHHHHHHCCCcCCCcEEEE
Confidence 9999999987652 2 37999999999987543 34799999998753332 23455555553 788998887
Q ss_pred cc
Q 016578 274 MA 275 (387)
Q Consensus 274 q~ 275 (387)
..
T Consensus 158 e~ 159 (199)
T PRK10909 158 ES 159 (199)
T ss_pred Ee
Confidence 53
No 70
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.16 E-value=8.3e-12 Score=101.57 Aligned_cols=99 Identities=18% Similarity=0.296 Sum_probs=61.2
Q ss_pred EEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCC
Q 016578 165 LVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD 244 (387)
Q Consensus 165 L~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~d 244 (387)
||||||+|..+..++++.+..+++++|+|+.+++.+++++.... ..+.+....+..+.......++||+|++...-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG----NDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CcceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999999999999998777899999999999999998877642 22333333333332222223589999976544
Q ss_pred CCCCccccchHHHHHHHHHhccCCCeE
Q 016578 245 PVGPAQELVEKPFFDTIAKALRPGGVL 271 (387)
Q Consensus 245 p~~~~~~L~~~ef~~~l~~~LkpgGvl 271 (387)
...+ -..++++.+++.|+|||+|
T Consensus 77 ~~l~----~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLE----DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-----HHHHHHHHTTT-TSS-EE
T ss_pred hhhh----hHHHHHHHHHHHcCCCCCC
Confidence 3331 1347999999999999986
No 71
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.16 E-value=7.3e-10 Score=107.76 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=83.6
Q ss_pred CEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEc
Q 016578 162 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVD 241 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D 241 (387)
.+|||+|||+|.++..+++..+..+|+++|+++.+++.|+++..... + ..+++++.+|..+.+. .++||+|++|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~--~-~~~v~~~~~d~~~~~~---~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ--L-EHRVEFIQSNLFEPLA---GQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEECchhccCc---CCCccEEEEC
Confidence 69999999999999999998766799999999999999999876542 2 2469999999876542 3479999998
Q ss_pred CCCCCC-------------Ccccc--------chHHHHHHHHHhccCCCeEEeccc
Q 016578 242 SSDPVG-------------PAQEL--------VEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 242 ~~dp~~-------------~~~~L--------~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
++.-.. |...| +.+.+++.+.+.|+|||++++..+
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 654111 00011 245678888999999999987553
No 72
>PLN03075 nicotianamine synthase; Provisional
Probab=99.15 E-value=4.1e-10 Score=109.68 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=82.1
Q ss_pred CCCEEEEEcCcccHHHHH--HHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 160 SPKTVLVVGGGDGGVLRE--ISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~e--l~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.|++|++||||.|.++.. ++++.+..+++++|+|+++++.||+.+... .++ .++++++.+|+.+.... .++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL-~~rV~F~~~Da~~~~~~--l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDL-SKRMFFHTADVMDVTES--LKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCc-cCCcEEEECchhhcccc--cCCcCE
Confidence 789999999998844333 345667789999999999999999998531 122 35899999999875322 357999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|++++--.+... ...+.++.+++.|+|||++++.+
T Consensus 199 VF~~ALi~~dk~---~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKE---EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEecccccccc---cHHHHHHHHHHhcCCCcEEEEec
Confidence 999843222111 14579999999999999999865
No 73
>PRK04266 fibrillarin; Provisional
Probab=99.15 E-value=1.2e-09 Score=102.97 Aligned_cols=103 Identities=19% Similarity=0.162 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHH--hhCCCCCee
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL--RQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l--~~~~~~~fD 236 (387)
.+..+|||+|||+|.++..+++..+..+|+++|+++.+++.+.+.... .+++.++.+|+.... ... .++||
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l-~~~~D 143 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHV-VEKVD 143 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhc-cccCC
Confidence 456799999999999999999875445899999999999977766542 257899999986421 111 34699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+|++|..+|+. ...+++.+++.|||||.+++.
T Consensus 144 ~i~~d~~~p~~------~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVAQPNQ------AEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEECCCChhH------HHHHHHHHHHhcCCCcEEEEE
Confidence 99998765431 123678999999999998873
No 74
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.14 E-value=2.4e-10 Score=106.57 Aligned_cols=112 Identities=24% Similarity=0.359 Sum_probs=84.3
Q ss_pred HHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcch
Q 016578 145 AYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA 223 (387)
Q Consensus 145 ~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~ 223 (387)
.+-.|+.++.+ .+..+||+||+|+|..+..+++. .+..+|+.||+++.+++.|++++.... -.+++++.+|+
T Consensus 60 ~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~gdg 132 (209)
T PF01135_consen 60 MVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----IDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEES-G
T ss_pred HHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----cCceeEEEcch
Confidence 46778877763 55679999999999999999886 344579999999999999999998662 34899999999
Q ss_pred hhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 224 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 224 ~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
..-+.. ...||.|++...-+..| ..+.+.|++||+|++..
T Consensus 133 ~~g~~~--~apfD~I~v~~a~~~ip----------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 133 SEGWPE--EAPFDRIIVTAAVPEIP----------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGTTGG--G-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEE
T ss_pred hhcccc--CCCcCEEEEeeccchHH----------HHHHHhcCCCcEEEEEE
Confidence 876544 35899999987644322 35667899999999743
No 75
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=5.2e-10 Score=105.76 Aligned_cols=118 Identities=26% Similarity=0.452 Sum_probs=96.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
....+||+.|.|+|.++..+++. .+..+|+.+|++++..+.|++++... ++.| ++++..+|..+... ++.||+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~d-~v~~~~~Dv~~~~~---~~~vDa 166 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGD-RVTLKLGDVREGID---EEDVDA 166 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--cccc-ceEEEecccccccc---ccccCE
Confidence 56779999999999999999975 55679999999999999999999876 4555 59999999988764 348999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHH
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET 295 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~ 295 (387)
|++|.++|| ++++.++++|+|||.+++-+ |.. +.++.....+++.
T Consensus 167 v~LDmp~PW---------~~le~~~~~Lkpgg~~~~y~--P~v--eQv~kt~~~l~~~ 211 (256)
T COG2519 167 VFLDLPDPW---------NVLEHVSDALKPGGVVVVYS--PTV--EQVEKTVEALRER 211 (256)
T ss_pred EEEcCCChH---------HHHHHHHHHhCCCcEEEEEc--CCH--HHHHHHHHHHHhc
Confidence 999999987 47999999999999999744 322 2345555666655
No 76
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.13 E-value=1.6e-09 Score=103.87 Aligned_cols=110 Identities=22% Similarity=0.337 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.++.+|||+|||+|.++..++++.+..+|+++|+++.+++.+++++... ...+++++.+|..+.+. .++||+|
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~~---~~~fD~I 179 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG----LGARVEFLQGDWFEPLP---GGRFDLI 179 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC----CCCcEEEEEccccCcCC---CCceeEE
Confidence 3567999999999999999999876789999999999999999987611 23589999999855432 3689999
Q ss_pred EEcCCCCCC--------------Cccccc--------hHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVG--------------PAQELV--------EKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~--------------~~~~L~--------~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+++.+.-.. +...++ ...+++.+.+.|+|||.+++..
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 998653110 001111 2457788889999999999754
No 77
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.13 E-value=2.3e-10 Score=106.69 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=79.7
Q ss_pred CEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEc
Q 016578 162 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVD 241 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D 241 (387)
++|||||||+|..+..+++..+..+|+++|+++++++.+++++... ++ +++++++.+|..+.. . +++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--gl-~~~i~~~~~d~~~~~--~-~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--GL-QGRIRIFYRDSAKDP--F-PDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--CC-CcceEEEecccccCC--C-CCCCCEeehH
Confidence 4799999999999999998765578999999999999999987653 22 358999999975431 1 3589999964
Q ss_pred CCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 242 SSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 242 ~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
....... . ...+++.+++.|+|||.++++
T Consensus 75 ~~l~~~~-~---~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 75 EVIHHIK-D---KMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred HHHHhCC-C---HHHHHHHHHHHcCCCCEEEEE
Confidence 3221111 1 357999999999999999865
No 78
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.12 E-value=7.7e-10 Score=105.13 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=77.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
++.+|||||||+|.++..+++.. .+|+++|+++.+++.+++..+ ...++.+|+.... .++++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~~--~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESLP--LATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccCc--CCCCcEEEEE
Confidence 46799999999999999988763 699999999999999998753 2357888876642 2356899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
++....+.+. ...++..+.++|+|||++++.
T Consensus 109 s~~~l~~~~d----~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 109 SNLAVQWCGN----LSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred ECchhhhcCC----HHHHHHHHHHHcCCCeEEEEE
Confidence 8765433221 246899999999999999864
No 79
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.12 E-value=1.2e-09 Score=118.75 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=88.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
+.++|||+|||+|+++..+++.+ ..+|++||+|+.+++.+++++..+ +++..+++++.+|++++++.. .++||+||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~n--g~~~~~v~~i~~D~~~~l~~~-~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALN--GLSGRQHRLIQADCLAWLKEA-REQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHh--CCCccceEEEEccHHHHHHHc-CCCcCEEE
Confidence 56899999999999999999874 568999999999999999998765 344358999999999998755 46899999
Q ss_pred EcCCCCCCCc--ccc-----chHHHHHHHHHhccCCCeEEeccc
Q 016578 240 VDSSDPVGPA--QEL-----VEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 240 ~D~~dp~~~~--~~L-----~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
+|++.-.... ... ...++++.+.++|+|||++++.+.
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9976421110 011 124577888999999999987543
No 80
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.11 E-value=6.5e-10 Score=102.27 Aligned_cols=102 Identities=17% Similarity=0.087 Sum_probs=75.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++..... +-++++...|...+ .. +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~--~~-~~~fD~I~ 99 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKARE-----NLPLRTDAYDINAA--AL-NEDYDFIF 99 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHh-----CCCceeEeccchhc--cc-cCCCCEEE
Confidence 46799999999999999999874 58999999999999999876533 12367777776543 12 35799999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+.......+.. ....+++.++++|+|||++++
T Consensus 100 ~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 100 STVVFMFLQAG--RVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EecccccCCHH--HHHHHHHHHHHHhCCCcEEEE
Confidence 76543222111 134689999999999998543
No 81
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.10 E-value=5e-10 Score=110.85 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=79.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
...+|||||||+|..+..+++.. .+|++||+++++++.|+++.... + ...+++++.+|+.++.. .+++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~~--~-~~~~i~~~~~dae~l~~--~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADMD--P-VTSTIEYLCTTAEKLAD--EGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhc--C-cccceeEEecCHHHhhh--ccCCCCEEE
Confidence 34599999999999999988753 68999999999999999875422 1 12489999999877532 246899999
Q ss_pred EcCCC-CCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 240 VDSSD-PVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 240 ~D~~d-p~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+...- +... ..+|++.++++|+|||.+++..
T Consensus 204 ~~~vLeHv~d-----~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 204 SLEVIEHVAN-----PAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred EhhHHHhcCC-----HHHHHHHHHHHcCCCcEEEEEE
Confidence 64322 2221 2469999999999999998754
No 82
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.10 E-value=1.6e-09 Score=103.50 Aligned_cols=131 Identities=22% Similarity=0.231 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.++++|||||||+|.++..+++.+ ..+|+++|+|+.+++.|++++.... +. .++.+..+| .+||+|
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~--~~-~~~~~~~~~----------~~fD~V 183 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNG--VE-LNVYLPQGD----------LKADVI 183 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcC--CC-ceEEEccCC----------CCcCEE
Confidence 467899999999999999888765 4579999999999999999876541 11 234433322 269999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHH-cCCCcceEEEEeeccCCCcEEE
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET-FKGSVHYAWASVPTYPSGIIGF 317 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~-F~~~v~~~~~~iPtyp~g~~gf 317 (387)
+++.... ....+++.+.+.|+|||++++..-. ......+.+.+++. |. . ..+- -.+.|-.
T Consensus 184 vani~~~-------~~~~l~~~~~~~LkpgG~lilsgi~----~~~~~~v~~~l~~~Gf~-~-----~~~~--~~~~W~~ 244 (250)
T PRK00517 184 VANILAN-------PLLELAPDLARLLKPGGRLILSGIL----EEQADEVLEAYEEAGFT-L-----DEVL--ERGEWVA 244 (250)
T ss_pred EEcCcHH-------HHHHHHHHHHHhcCCCcEEEEEECc----HhhHHHHHHHHHHCCCE-E-----EEEE--EeCCEEE
Confidence 9875321 1235788999999999999975311 12234444555443 32 1 2222 2367876
Q ss_pred EEEec
Q 016578 318 LICST 322 (387)
Q Consensus 318 ~~ask 322 (387)
+++.|
T Consensus 245 ~~~~~ 249 (250)
T PRK00517 245 LVGKK 249 (250)
T ss_pred EEEEe
Confidence 66654
No 83
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.10 E-value=1.1e-09 Score=105.49 Aligned_cols=106 Identities=19% Similarity=0.277 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
+..++|||||||+|..+..+++. .+..+|+++|+++.+++.|+++.... + -++++++.+|+.+.- .+++.||+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--g--~~~v~~~~~d~~~l~--~~~~~fD~ 149 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--G--YTNVEFRLGEIEALP--VADNSVDV 149 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--C--CCCEEEEEcchhhCC--CCCCceeE
Confidence 45679999999999988877765 33458999999999999999987644 2 248899999976531 23568999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|+.+......+. ....++.+.++|+|||.+++.
T Consensus 150 Vi~~~v~~~~~d----~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 150 IISNCVINLSPD----KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEcCcccCCCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 998764332221 246899999999999999863
No 84
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.09 E-value=1.4e-09 Score=102.60 Aligned_cols=114 Identities=29% Similarity=0.367 Sum_probs=98.8
Q ss_pred CEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCC-CeeEEEE
Q 016578 162 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG-KYDAIIV 240 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~-~fDvII~ 240 (387)
..+|+||||.|..+.++|+..|...+.+||+...++..|-+...... + +|+.++.+||.+++....++ +.|-|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~--l--~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG--L--KNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC--C--CcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 47999999999999999999888999999999999999888876551 1 38999999999998876544 9999999
Q ss_pred cCCCCCCCc----cccchHHHHHHHHHhccCCCeEEecccccc
Q 016578 241 DSSDPVGPA----QELVEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 241 D~~dp~~~~----~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
..+|||.-. ..+.+.+|++.+.+.|+|||.|-+.+++..
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~ 168 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE 168 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHH
Confidence 999999643 458999999999999999999998776543
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.08 E-value=1.6e-09 Score=97.54 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+.++|||+|||+|.++..+++. ..+|+++|+++.+++.+++++... +..+.+++++.+|..+.+. +++||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~~~---~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLN--NIRNNGVEVIRSDLFEPFR---GDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHc--CCCCcceEEEecccccccc---ccCceEE
Confidence 45679999999999999999988 379999999999999999987654 2223338899999766432 3479999
Q ss_pred EEcCCCCCCCcc-----------------ccchHHHHHHHHHhccCCCeEEecccc
Q 016578 239 IVDSSDPVGPAQ-----------------ELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 239 I~D~~dp~~~~~-----------------~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
+.+.+....... ......+++.+.+.|+|||.+++...+
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 987653111000 011346899999999999988765433
No 86
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.07 E-value=2.1e-09 Score=107.01 Aligned_cols=102 Identities=22% Similarity=0.263 Sum_probs=79.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
...+|||||||+|.++..+++..+..+|+++|+++.+++.++++.+ ..+++++.+|+.+.- .+++.||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~lp--~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDLP--FPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhCC--CCCCceeEEE
Confidence 4569999999999999999887555799999999999999999754 246889999987632 2356899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+...-...+. ....++++++.|+|||.+++.
T Consensus 184 s~~~L~~~~d----~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 184 SAGSIEYWPD----PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EcChhhhCCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 7543322221 235899999999999998753
No 87
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.07 E-value=1.4e-09 Score=113.83 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=82.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++... ++ +.+++++.+|..+.+. +++||+|+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~--~l-~~~v~~~~~D~~~~~~---~~~fDlIv 211 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY--EV-TDRIQIIHSNWFENIE---KQKFDFIV 211 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc--CC-ccceeeeecchhhhCc---CCCccEEE
Confidence 356899999999999999987756679999999999999999997644 22 2489999999876542 45899999
Q ss_pred EcCCCCCC--------------Cccccc--------hHHHHHHHHHhccCCCeEEec
Q 016578 240 VDSSDPVG--------------PAQELV--------EKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 240 ~D~~dp~~--------------~~~~L~--------~~ef~~~l~~~LkpgGvlv~q 274 (387)
++++.-.. |...|+ ...+++.+.+.|+|||.+++.
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 98653110 101122 234567788899999999874
No 88
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.07 E-value=7.8e-10 Score=103.85 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=80.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
...+|||||||.|.++..+++.+ .+|+++|++++.|+.||.+..+. .-.+++......+.... .++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~-----gv~i~y~~~~~edl~~~--~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALES-----GVNIDYRQATVEDLASA--GGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhc-----cccccchhhhHHHHHhc--CCCccEEE
Confidence 46699999999999999999986 89999999999999999987654 22356777777765433 37999999
Q ss_pred EcC-CCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 240 VDS-SDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 240 ~D~-~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
+-- -.+... -..|++.|.+++||||++....-+
T Consensus 130 cmEVlEHv~d-----p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 130 CMEVLEHVPD-----PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred EhhHHHccCC-----HHHHHHHHHHHcCCCcEEEEeccc
Confidence 642 112221 135999999999999999876544
No 89
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.07 E-value=9.1e-10 Score=100.79 Aligned_cols=130 Identities=22% Similarity=0.329 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
+.-.++|++|||.|.++..|+.+. .+++++|+++..++.||+.+... ++|++++.|.-++. ++++||+|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~------~~V~~~~~dvp~~~---P~~~FDLI 110 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGL------PHVEWIQADVPEFW---PEGRFDLI 110 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT------SS-EEEE
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC------CCeEEEECcCCCCC---CCCCeeEE
Confidence 445699999999999999999884 69999999999999999998753 78999999987764 46799999
Q ss_pred EEcCCCCC-CCccccchHHHHHHHHHhccCCCeEEecc-----cccchhhhHHHHHHHHHHHHcCCCcce
Q 016578 239 IVDSSDPV-GPAQELVEKPFFDTIAKALRPGGVLCNMA-----ESMWLHTHLIEDMISICRETFKGSVHY 302 (387)
Q Consensus 239 I~D~~dp~-~~~~~L~~~ef~~~l~~~LkpgGvlv~q~-----~s~~~~~~~~~~~~~~l~~~F~~~v~~ 302 (387)
++.-.... .+.+. -..+.+.+.++|+|||.+++-. ..-|.+..-.+.+...+++.|. .+.-
T Consensus 111 V~SEVlYYL~~~~~--L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~-~~~~ 177 (201)
T PF05401_consen 111 VLSEVLYYLDDAED--LRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT-EVER 177 (201)
T ss_dssp EEES-GGGSSSHHH--HHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE-EEEE
T ss_pred EEehHhHcCCCHHH--HHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh-heeE
Confidence 97632211 11111 2347889999999999998632 2336666666778888888886 3443
No 90
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.06 E-value=1.6e-09 Score=105.45 Aligned_cols=130 Identities=22% Similarity=0.307 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fDv 237 (387)
.+.++||++-|-+|+++..+++. +..+|+.||+|...++.+++++..+ +++..+++++.+|++++++.. ..++||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lN--g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALN--GLDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHT--T-CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc--CCCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 35689999999999999998875 4679999999999999999998765 455578999999999998643 2468999
Q ss_pred EEEcCCCCCCCcccc--chHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHH
Q 016578 238 IIVDSSDPVGPAQEL--VEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISI 291 (387)
Q Consensus 238 II~D~~dp~~~~~~L--~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~ 291 (387)
||+|++.-......+ -..+.+..+.+.|+|||++++-+.++....+.+.+++..
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~ 254 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAE 254 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence 999987521111111 013467788899999999987777777666555444433
No 91
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.05 E-value=2.7e-09 Score=104.10 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=85.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
+.++|||+|||+|.++..+++.+ ..+|+++|+|+.+++.|++++.... + ..++.+..+|.... .+++||+|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~--~-~~~~~~~~~~~~~~----~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQ--V-SDRLQVKLIYLEQP----IEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcC--C-CcceEEEecccccc----cCCCceEEE
Confidence 46799999999999999988874 5699999999999999999876542 2 24677777763222 245899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcC
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 297 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~ 297 (387)
++... .. ...++..+.+.|+|||.+++.. .. ......+.+.+++.|.
T Consensus 231 an~~~-----~~--l~~ll~~~~~~LkpgG~li~sg---i~-~~~~~~v~~~~~~~f~ 277 (288)
T TIGR00406 231 ANILA-----EV--IKELYPQFSRLVKPGGWLILSG---IL-ETQAQSVCDAYEQGFT 277 (288)
T ss_pred EecCH-----HH--HHHHHHHHHHHcCCCcEEEEEe---Cc-HhHHHHHHHHHHccCc
Confidence 87531 11 2468899999999999998743 11 1233445555554454
No 92
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.04 E-value=2.1e-09 Score=111.44 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.++.+|||||||+|..+..++++. ..+|+++|+++.+++.|+++.... ..+++++.+|..... .++++||+|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~-----~~~v~~~~~d~~~~~--~~~~~fD~I 336 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR-----KCSVEFEVADCTKKT--YPDNSFDVI 336 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC-----CCceEEEEcCcccCC--CCCCCEEEE
Confidence 456799999999999999999875 358999999999999999876432 357999999976532 235689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
++...-...+. ...+++.+++.|+|||.+++.
T Consensus 337 ~s~~~l~h~~d----~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 337 YSRDTILHIQD----KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EECCcccccCC----HHHHHHHHHHHcCCCeEEEEE
Confidence 97543221111 346899999999999998864
No 93
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.04 E-value=2.8e-09 Score=99.33 Aligned_cols=120 Identities=20% Similarity=0.248 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHH------hhCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL------RQVP 231 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l------~~~~ 231 (387)
++..+|||||||+|..+..+++.. +..+|++||+++. .+ .++++++++|+.+.- ....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~--------~~-------~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM--------DP-------IVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc--------cC-------CCCcEEEecCCCChHHHHHHHHHhC
Confidence 456799999999999999998874 3469999999982 01 246899999987631 1233
Q ss_pred CCCeeEEEEcCCCCC-CCc--ccc----chHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcC
Q 016578 232 RGKYDAIIVDSSDPV-GPA--QEL----VEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 297 (387)
Q Consensus 232 ~~~fDvII~D~~dp~-~~~--~~L----~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~ 297 (387)
++.||+|++|..... +.. +.. .....++.+.+.|+|||.|++-. ...+.+.+++..++..|.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~----~~~~~~~~~l~~l~~~f~ 183 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV----FQGEGFDEYLREIRSLFT 183 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE----ecCcCHHHHHHHHHhCce
Confidence 568999999864322 111 100 12468899999999999998732 223445667788888887
No 94
>PRK08317 hypothetical protein; Provisional
Probab=99.02 E-value=2.8e-09 Score=98.98 Aligned_cols=105 Identities=26% Similarity=0.332 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
..+.+|||||||+|..+..++++. +..+++++|+++.+++.++++... ..++++++.+|..... ..+++||+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~--~~~~~~D~ 90 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP--FPDGSFDA 90 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC--CCCCCceE
Confidence 456799999999999999999874 567999999999999999987322 2457999999976542 23468999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|++...-...+. ...+++.+.++|+|||.+++.
T Consensus 91 v~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 91 VRSDRVLQHLED----PARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred EEEechhhccCC----HHHHHHHHHHHhcCCcEEEEE
Confidence 997643222111 346899999999999998764
No 95
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.02 E-value=1.5e-09 Score=105.63 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=78.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
.+.+|||||||+|..+..+++.. .+|+++|+|+.+++.++++.... ..++++...|+.... . +++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~~~-----~l~v~~~~~D~~~~~--~-~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAEKE-----NLNIRTGLYDINSAS--I-QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHc-----CCceEEEEechhccc--c-cCCccEEE
Confidence 46799999999999999999874 58999999999999999887543 236888888876532 2 46899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+.......+.. ....+++.+.++|+|||++++
T Consensus 190 ~~~vl~~l~~~--~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMFLNRE--RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred EcchhhhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 76543222111 134689999999999998554
No 96
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.01 E-value=2e-09 Score=97.00 Aligned_cols=112 Identities=21% Similarity=0.433 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+..+|||+|||+|.++..+++..-....++||.++..+++|+.-.... ++++ .+++.+.|..+- +...++||+|
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~--~~~n-~I~f~q~DI~~~--~~~~~qfdlv 140 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD--GFSN-EIRFQQLDITDP--DFLSGQFDLV 140 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc--CCCc-ceeEEEeeccCC--cccccceeEE
Confidence 3445999999999999999998754456999999999999987654332 3333 599999998763 2235678887
Q ss_pred EE----cCC--CCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 239 IV----DSS--DPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 239 I~----D~~--dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
+- |+- .|..+...+ .-++..+.+.|+|||+|++-++|
T Consensus 141 lDKGT~DAisLs~d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 141 LDKGTLDAISLSPDGPVGRL--VVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eecCceeeeecCCCCcccce--eeehhhHhhccCCCcEEEEEecC
Confidence 72 211 122332222 23677899999999999986655
No 97
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=8.4e-09 Score=100.32 Aligned_cols=149 Identities=22% Similarity=0.273 Sum_probs=99.9
Q ss_pred CCeeEEEEEecCceeEEEEcCeEeecccchhHHHHHHH-hccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeC
Q 016578 114 EYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIA-HLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEI 192 (387)
Q Consensus 114 ~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~-~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEi 192 (387)
|-|.|.-. -..+|..+.++-.+-....|.....+.+. .+. .... +|||||||+|.++..+++..+..+|+++||
T Consensus 68 P~~yi~g~-~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~---~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Di 142 (280)
T COG2890 68 PVAYILGS-AEFGGLRFKVDEGVLIPRPDTELLVEAALALLL---QLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDI 142 (280)
T ss_pred CHhHhhcc-CeecceeeeeCCCceecCCchHHHHHHHHHhhh---hcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEEC
Confidence 34444433 12356667776555554555444444332 111 1112 899999999999999999987789999999
Q ss_pred CHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCC-CCC-----Cc-------ccc-------
Q 016578 193 DKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVG-----PA-------QEL------- 252 (387)
Q Consensus 193 D~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~d-p~~-----~~-------~~L------- 252 (387)
|+..+++|+++.... ++ .++.++.+|.++-+ .++||+|+++++. |.. +. ..|
T Consensus 143 s~~Al~~A~~Na~~~--~l--~~~~~~~~dlf~~~----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl 214 (280)
T COG2890 143 SPDALALARENAERN--GL--VRVLVVQSDLFEPL----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGL 214 (280)
T ss_pred CHHHHHHHHHHHHHc--CC--ccEEEEeeeccccc----CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHH
Confidence 999999999998765 22 45667777765543 3489999998764 221 00 001
Q ss_pred -chHHHHHHHHHhccCCCeEEecc
Q 016578 253 -VEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 253 -~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
....|+..+.+.|+|||++++..
T Consensus 215 ~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 215 EVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred HHHHHHHHhhHHHcCCCcEEEEEE
Confidence 23567888999999999999754
No 98
>PRK06922 hypothetical protein; Provisional
Probab=99.01 E-value=1.6e-09 Score=114.71 Aligned_cols=110 Identities=24% Similarity=0.225 Sum_probs=83.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
++.+|||||||+|..+..+++..+..+|+++|+++.+++.|++..+.. ..+++++.+|+.+.....++++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence 467999999999999999988766789999999999999999876532 347889999987742223456899999
Q ss_pred EcCCCCCC----C-c----cccchHHHHHHHHHhccCCCeEEec
Q 016578 240 VDSSDPVG----P-A----QELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 240 ~D~~dp~~----~-~----~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+....+.. + . ..-....+++.++++|||||.+++.
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 76432210 0 0 0112356899999999999999875
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.01 E-value=3.8e-09 Score=98.01 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+..+|||||||+|..+..+++.. .+|+++|+++++++.+++++... ++ .+++++.+|+.+.+.. .++||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~~--~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL--GL--HNVSVRHGDGWKGWPA--YAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC--CC--CceEEEECCcccCCCc--CCCcCEE
Confidence 456799999999999998877764 48999999999999999998765 22 3599999998654322 3689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+++...+ .+.+.+.+.|+|||++++..
T Consensus 149 ~~~~~~~----------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAP----------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCch----------hhhHHHHHhcCCCcEEEEEE
Confidence 9876422 12346778999999998743
No 100
>PHA03411 putative methyltransferase; Provisional
Probab=99.00 E-value=3.9e-09 Score=101.75 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=83.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
...+|||+|||+|.++..++++.+..+|++||+|+.+++.+++.+ ++++++.+|++++.. +++||+||
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc---cCCCcEEE
Confidence 356999999999999999888754579999999999999999864 368899999998753 35899999
Q ss_pred EcCCCCCCCc---cc--cc-----------hHHHHHHHHHhccCCCeEEe-cccccchhhhH
Q 016578 240 VDSSDPVGPA---QE--LV-----------EKPFFDTIAKALRPGGVLCN-MAESMWLHTHL 284 (387)
Q Consensus 240 ~D~~dp~~~~---~~--L~-----------~~ef~~~l~~~LkpgGvlv~-q~~s~~~~~~~ 284 (387)
++.+....+. .. -+ -.+++..+...|+|+|.+.+ ....++++..+
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl 193 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTM 193 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccC
Confidence 9876532111 11 11 24688888999999996643 33445555443
No 101
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.00 E-value=3.4e-09 Score=105.15 Aligned_cols=109 Identities=20% Similarity=0.241 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
++..+|||+|||+|+++.+++... .+|+++|+|+.+++.+++++... ++. +++++.+|+.+.- ..+++||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~~~--g~~--~i~~~~~D~~~l~--~~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLEHY--GIE--DFFVKRGDATKLP--LSSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHHHh--CCC--CCeEEecchhcCC--cccCCCCEE
Confidence 456699999999999999987753 68999999999999999998755 222 3889999988742 124689999
Q ss_pred EEcCCCCCCC--ccc---cchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGP--AQE---LVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~--~~~---L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
++|++..... ... -...++++.+++.|+|||.+++..
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 9997653321 111 123578999999999999988654
No 102
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.99 E-value=9.8e-09 Score=94.68 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCC-ceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSV-ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~-~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
..+.+|||+|||+|..+..+++..+. .+++++|+++.+++.+++++. . ..+++++.+|+.+.. ..+++||+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-----~~~i~~~~~d~~~~~--~~~~~~D~ 109 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-----PLNIEFIQADAEALP--FEDNSFDA 109 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-----CCCceEEecchhcCC--CCCCcEEE
Confidence 46779999999999999999987654 589999999999999999875 2 357899999987753 22468999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|++........ ....+++.+.+.|+|||.+++.
T Consensus 110 i~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 110 VTIAFGLRNVT----DIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred EEEeeeeCCcc----cHHHHHHHHHHHcCCCcEEEEE
Confidence 99754321111 1346899999999999998853
No 103
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.99 E-value=3.7e-09 Score=98.55 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCC-CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~-~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+..+|||||||+|..+..+++..+ ..+++++|+++.+++.+++++.... . +++++++.+|..+.. ...+.||+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~--~~~~~~D~ 124 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--L-SGNVEFVQGDAEALP--FPDNSFDA 124 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--c-ccCeEEEecccccCC--CCCCCccE
Confidence 3457999999999999999988754 5799999999999999999876421 1 357899999987653 22468999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
|++.......+ ....+++.+.+.|+|||++++
T Consensus 125 I~~~~~l~~~~----~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 125 VTIAFGLRNVP----DIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred EEEecccccCC----CHHHHHHHHHHhccCCcEEEE
Confidence 99754322111 134689999999999998875
No 104
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.98 E-value=4.6e-09 Score=106.42 Aligned_cols=101 Identities=21% Similarity=0.368 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+..+|||||||+|..+..++++.+ .+|+++|+|+++++.|++.... ..+++..+|..+. +++||+|
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~~-------l~v~~~~~D~~~l-----~~~fD~I 232 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCAG-------LPVEIRLQDYRDL-----NGQFDRI 232 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc-------CeEEEEECchhhc-----CCCCCEE
Confidence 4567999999999999999998753 5899999999999999998742 2588888987543 3589999
Q ss_pred EEcCC-CCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~-dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
++... ...+.. ....+++.+.++|+|||+++++.
T Consensus 233 vs~~~~ehvg~~---~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGPK---NYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCChH---HHHHHHHHHHHHcCCCcEEEEEE
Confidence 85432 222211 12468999999999999998764
No 105
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.98 E-value=3e-09 Score=102.67 Aligned_cols=94 Identities=20% Similarity=0.341 Sum_probs=73.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCC---ceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSV---ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~---~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
...+|||||||+|..+..+++..+. ..|+++|+++.+++.|++.. +++++.++|+.+.. .++++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~lp--~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRLP--FADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccCC--CcCCcee
Confidence 4568999999999999999875322 37999999999999998864 36788999987642 2356899
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|+.... + .+++.++++|+|||++++..
T Consensus 154 ~I~~~~~----~-------~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 154 AIIRIYA----P-------CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred EEEEecC----C-------CCHHHHHhhccCCCEEEEEe
Confidence 9996432 1 24678899999999998754
No 106
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=7.1e-09 Score=106.49 Aligned_cols=116 Identities=19% Similarity=0.273 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+..+|||+|||+|+.+..+++..+..+|+++|+++.+++.+++++... ..+++++.+|+.+.......++||.|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-----g~~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-----GLKATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEcCcccchhhcccCCCCEE
Confidence 4567999999999999999998754469999999999999999998765 22478999998764322224579999
Q ss_pred EEcCCCC-CCC----ccc-------------cchHHHHHHHHHhccCCCeEEecccccc
Q 016578 239 IVDSSDP-VGP----AQE-------------LVEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 239 I~D~~dp-~~~----~~~-------------L~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
++|.+.. .+. ++. -.+.++++.+.+.|+|||.++..+.+..
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9998642 111 000 1134689999999999999997665544
No 107
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.98 E-value=1.1e-09 Score=107.05 Aligned_cols=135 Identities=21% Similarity=0.305 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+.++|||+|||+|.++...++.+ ..+|+++|+||..++.|+++...+ ++.+ ++.+. ...+ ...++||+|
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N--~~~~-~~~v~--~~~~----~~~~~~dlv 229 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELN--GVED-RIEVS--LSED----LVEGKFDLV 229 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHT--T-TT-CEEES--CTSC----TCCS-EEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHc--CCCe-eEEEE--Eecc----cccccCCEE
Confidence 456799999999999999999985 679999999999999999998765 3344 66653 1111 224689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEE
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFL 318 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~ 318 (387)
+.+... .. -.+....+.++|+|||.+++.. .+.. ....+.+.+++-|. ....-. .+.|..+
T Consensus 230 vANI~~-----~v--L~~l~~~~~~~l~~~G~lIlSG---Il~~-~~~~v~~a~~~g~~------~~~~~~--~~~W~~l 290 (295)
T PF06325_consen 230 VANILA-----DV--LLELAPDIASLLKPGGYLILSG---ILEE-QEDEVIEAYKQGFE------LVEERE--EGEWVAL 290 (295)
T ss_dssp EEES-H-----HH--HHHHHHHCHHHEEEEEEEEEEE---EEGG-GHHHHHHHHHTTEE------EEEEEE--ETTEEEE
T ss_pred EECCCH-----HH--HHHHHHHHHHhhCCCCEEEEcc---ccHH-HHHHHHHHHHCCCE------EEEEEE--ECCEEEE
Confidence 988642 11 1246778899999999999743 2222 23455555543222 222222 3678777
Q ss_pred EEec
Q 016578 319 ICST 322 (387)
Q Consensus 319 ~ask 322 (387)
++.|
T Consensus 291 ~~~K 294 (295)
T PF06325_consen 291 VFKK 294 (295)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7655
No 108
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.97 E-value=5.1e-09 Score=93.89 Aligned_cols=101 Identities=20% Similarity=0.265 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
....+|||||||+|.++.++++.. .+|++||+|+.+++.+++++.. .++++++.+|+.++.. ++..||.|
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~--~~~~~d~v 81 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL--PKLQPYKV 81 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc--cccCCCEE
Confidence 345699999999999999999883 6999999999999999998753 3589999999988742 23469999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHh--ccCCCeEEeccc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKA--LRPGGVLCNMAE 276 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~--LkpgGvlv~q~~ 276 (387)
+.+.+... +.+.+..+.+. +.++|++++|-+
T Consensus 82 i~n~Py~~-------~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 82 VGNLPYNI-------STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EECCCccc-------HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 98875432 12344444433 448899998754
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.97 E-value=7.1e-09 Score=81.65 Aligned_cols=103 Identities=23% Similarity=0.307 Sum_probs=79.2
Q ss_pred EEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcC
Q 016578 163 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDS 242 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~ 242 (387)
+||++|||.|..+..+++ ....+++++|+++..++.+++..... ...+++++.+|..++.. ...++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPP-EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhcc-ccCCceEEEEEcc
Confidence 489999999999999998 34679999999999999998532211 24689999999988754 1246899999877
Q ss_pred CCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 243 SDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 243 ~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
..... .-....+++.+.+.|+++|.+++.
T Consensus 75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 54321 112456899999999999999864
No 110
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=9.3e-09 Score=101.82 Aligned_cols=111 Identities=22% Similarity=0.232 Sum_probs=82.2
Q ss_pred HHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCC-ceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchh
Q 016578 146 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSV-ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV 224 (387)
Q Consensus 146 Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~-~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~ 224 (387)
+..++..+.. .+..+|||||||+|..+..+++..+. .+|++||+++++++.|++++.... -.+++++.+|+.
T Consensus 69 ~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~ 141 (322)
T PRK13943 69 MALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGY 141 (322)
T ss_pred HHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChh
Confidence 3445554432 45679999999999999999986532 479999999999999999886552 247999999987
Q ss_pred hHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 225 EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 225 ~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+.+.. .+.||+|+++...+ +....+.+.|+|||.+++..
T Consensus 142 ~~~~~--~~~fD~Ii~~~g~~----------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPE--FAPYDVIFVTVGVD----------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccc--cCCccEEEECCchH----------HhHHHHHHhcCCCCEEEEEe
Confidence 76543 24799999874321 12345678999999988643
No 111
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.96 E-value=1.1e-08 Score=93.18 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH-----Hh-hCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF-----LR-QVP 231 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~-----l~-~~~ 231 (387)
+..++|||||||+|+++..+++.. +..+|+++|+++.. . .++++++.+|..+. +. ..+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 456799999999999999988763 45689999999864 1 13578888887542 11 123
Q ss_pred CCCeeEEEEcCCCCC-CC--cccc----chHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcC
Q 016578 232 RGKYDAIIVDSSDPV-GP--AQEL----VEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 297 (387)
Q Consensus 232 ~~~fDvII~D~~dp~-~~--~~~L----~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~ 297 (387)
.++||+|++|.+.+. +. ..++ ....+++.+.+.|+|||++++.. .....+..++..++..|.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~----~~~~~~~~~l~~l~~~~~ 164 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV----FQGEEIDEYLNELRKLFE 164 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE----ccCccHHHHHHHHHhhhc
Confidence 457999999865321 11 1111 12568999999999999999743 222334566677766665
No 112
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.96 E-value=9.3e-09 Score=94.40 Aligned_cols=107 Identities=14% Similarity=0.075 Sum_probs=82.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCC--CCCeeE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP--RGKYDA 237 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~--~~~fDv 237 (387)
...+|||++||+|.++.+++.+. ..+|++||+|+..++.+++++.... + ..+++++.+|+.++++... ...||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~--~-~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLK--S-GEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhC--C-cccEEEEehhHHHHHHHhhccCCCceE
Confidence 45799999999999999999985 4689999999999999999987652 2 2479999999998876431 224899
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHH--hccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAK--ALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~--~LkpgGvlv~q~ 275 (387)
|+.|++..... ..+.++.+.+ .|+++|++++..
T Consensus 125 v~~DPPy~~~~-----~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 125 IYLDPPFFNGA-----LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEECcCCCCCc-----HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 99998764321 2344555544 688999988743
No 113
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=1e-08 Score=105.77 Aligned_cols=116 Identities=20% Similarity=0.338 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+.++|||+|||+|+.+..++++. +..+|+++|+++..++.+++++... ++ .+++++.+|+.++.... .++||+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~--g~--~~v~~~~~D~~~~~~~~-~~~fD~ 323 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL--GL--TNIETKALDARKVHEKF-AEKFDK 323 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--CeEEEEeCCcccccchh-cccCCE
Confidence 455799999999999999999863 4569999999999999999998765 22 24999999998764333 258999
Q ss_pred EEEcCCCC-CC-----Cc-------ccc-----chHHHHHHHHHhccCCCeEEecccccc
Q 016578 238 IIVDSSDP-VG-----PA-------QEL-----VEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 238 II~D~~dp-~~-----~~-------~~L-----~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
|++|++.. .+ |. ..+ .+.++++.+.+.|+|||.++..+.+.+
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 99997531 11 10 000 235689999999999999997655543
No 114
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.94 E-value=9.8e-10 Score=111.97 Aligned_cols=149 Identities=23% Similarity=0.362 Sum_probs=116.6
Q ss_pred hHHHHHHHh-ccccC------CCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCE
Q 016578 144 CAYQEMIAH-LPLCS------IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRV 216 (387)
Q Consensus 144 ~~Y~eml~~-l~l~~------~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv 216 (387)
..||.|+.. +++.. +....++|++|-|+|++...+..+.+..++++||+||++++.|++||.... +.|.
T Consensus 272 s~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q----~~r~ 347 (482)
T KOG2352|consen 272 SQYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ----SDRN 347 (482)
T ss_pred cchhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh----hhhh
Confidence 347776643 44432 234568999999999999999888888899999999999999999997663 3489
Q ss_pred EEEEcchhhHHhhC-----CCCCeeEEEEcC--CCCC---CCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHH
Q 016578 217 RLHIGDAVEFLRQV-----PRGKYDAIIVDS--SDPV---GPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIE 286 (387)
Q Consensus 217 ~v~~gD~~~~l~~~-----~~~~fDvII~D~--~dp~---~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~ 286 (387)
++++.||.+|+++. .+..||+|++|. +|+. .|+.....+.+++.++..|.|.|.++++.-. .+.....
T Consensus 348 ~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~--r~~~~~~ 425 (482)
T KOG2352|consen 348 KVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT--RNSSFKD 425 (482)
T ss_pred hhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec--CCcchhH
Confidence 99999999998753 245799999764 4432 2456677888999999999999999987632 3445667
Q ss_pred HHHHHHHHHcCC
Q 016578 287 DMISICRETFKG 298 (387)
Q Consensus 287 ~~~~~l~~~F~~ 298 (387)
.+...++++|+.
T Consensus 426 ~~~~~l~~vf~~ 437 (482)
T KOG2352|consen 426 EVLMNLAKVFPQ 437 (482)
T ss_pred HHHHhhhhhhHH
Confidence 889999999994
No 115
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=4.9e-09 Score=102.08 Aligned_cols=103 Identities=21% Similarity=0.225 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.++++|||+|||+|.++..+++.+ ..+|+++||||..++.|+++...+.. ++.++.-..+..+.+ ..++||+|
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v---~~~~~~~~~~~~~~~---~~~~~DvI 233 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGV---ELLVQAKGFLLLEVP---ENGPFDVI 233 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCC---chhhhcccccchhhc---ccCcccEE
Confidence 378899999999999999999985 67999999999999999999876532 112233333333332 23589999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+.+.-. +. -..+...+++.|+|||.+++..
T Consensus 234 VANILA-----~v--l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 234 VANILA-----EV--LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred EehhhH-----HH--HHHHHHHHHHHcCCCceEEEEe
Confidence 987521 11 1257889999999999999743
No 116
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.93 E-value=3.3e-09 Score=96.91 Aligned_cols=108 Identities=23% Similarity=0.345 Sum_probs=81.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC--CCCCeeE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDA 237 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~--~~~~fDv 237 (387)
...+|||+-+|+|.++.|++.++ ..+|+.||.|+..++..++++..... . .+++++.+|+..++... ...+||+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~--~-~~~~v~~~d~~~~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGL--E-DKIRVIKGDAFKFLLKLAKKGEKFDI 117 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---G-GGEEEEESSHHHHHHHHHHCTS-EEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCC--C-cceeeeccCHHHHHHhhcccCCCceE
Confidence 56799999999999999999885 68999999999999999999887632 2 37999999999888654 4578999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHH--HhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIA--KALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~--~~LkpgGvlv~q~ 275 (387)
|++|++..... +..+.++.+. ..|+++|++++..
T Consensus 118 IflDPPY~~~~----~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 118 IFLDPPYAKGL----YYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp EEE--STTSCH----HHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEECCCcccch----HHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 99998764332 1245667766 6899999999764
No 117
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=3e-08 Score=102.43 Aligned_cols=114 Identities=25% Similarity=0.291 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+.++|||+|||+|+.+..+++.. ...+|+++|+++.+++.+++++... ++ .+++++.+|+..+. +++.||+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~--~~v~~~~~Da~~~~---~~~~fD~ 321 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--GI--TIIETIEGDARSFS---PEEQPDA 321 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--CC--CeEEEEeCcccccc---cCCCCCE
Confidence 345799999999999998888753 3458999999999999999998765 22 36999999998764 2458999
Q ss_pred EEEcCCC-CCCC----cc--------c-----cchHHHHHHHHHhccCCCeEEecccccc
Q 016578 238 IIVDSSD-PVGP----AQ--------E-----LVEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 238 II~D~~d-p~~~----~~--------~-----L~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
|++|++. ..+. ++ . -.+.+++..+.+.|+|||+++..+.+..
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9999653 1111 00 0 0134689999999999999998776654
No 118
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.92 E-value=2.1e-08 Score=96.65 Aligned_cols=131 Identities=25% Similarity=0.260 Sum_probs=93.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+..+|||+|||.|+.+..+++.. +...|+++|+++..++.+++++... ++ .+++++..|+..+... .+.||+
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--g~--~~v~~~~~D~~~~~~~--~~~fD~ 143 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--GV--LNVAVTNFDGRVFGAA--VPKFDA 143 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--CC--CcEEEecCCHHHhhhh--ccCCCE
Confidence 345799999999999999988753 2358999999999999999998765 22 3699999999876432 346999
Q ss_pred EEEcCCCC-CCC----cc--------c-----cchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcC
Q 016578 238 IIVDSSDP-VGP----AQ--------E-----LVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 297 (387)
Q Consensus 238 II~D~~dp-~~~----~~--------~-----L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~ 297 (387)
|++|++-. .+. ++ . ..+.++++.+.+.|+|||+++..+.+.. ...-..+.+.+.+.++
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~--~~Ene~vv~~~l~~~~ 219 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE--PEENEAVVDYLLEKRP 219 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC--hHHHHHHHHHHHHhCC
Confidence 99997642 110 00 0 1345689999999999999986655432 2233444444444444
No 119
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.92 E-value=6.6e-09 Score=101.86 Aligned_cols=106 Identities=22% Similarity=0.198 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+..+|||||||+|.++..++++.+..+++++|+ +.+++.+++++... ++ ..|++++.+|+++. .. ..+|+|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--gl-~~rv~~~~~d~~~~--~~--~~~D~v 219 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--GV-ADRMRGIAVDIYKE--SY--PEADAV 219 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC--Cc-cceEEEEecCccCC--CC--CCCCEE
Confidence 4567999999999999999999877789999998 78999999987654 22 35899999998652 12 247998
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
++....+..... ....+++.++++|+|||.+++.
T Consensus 220 ~~~~~lh~~~~~--~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 220 LFCRILYSANEQ--LSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EeEhhhhcCChH--HHHHHHHHHHHhcCCCCEEEEE
Confidence 865432221111 1245899999999999999764
No 120
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.92 E-value=5.9e-09 Score=96.80 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
+++.+|||||||+|..+..+++..+..++++||+++++++.|+++++ +++++.+|+.+. .++++||+|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~~---~~~~sfD~V 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFDP---FKDNFFDLV 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccCC---CCCCCEEEE
Confidence 56779999999999999999887555799999999999999998753 467888887762 235689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKAL 265 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~L 265 (387)
++...-...++. .-..+++.+.+.+
T Consensus 110 ~~~~vL~hl~p~--~~~~~l~el~r~~ 134 (204)
T TIGR03587 110 LTKGVLIHINPD--NLPTAYRELYRCS 134 (204)
T ss_pred EECChhhhCCHH--HHHHHHHHHHhhc
Confidence 976543211111 1245788888877
No 121
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.91 E-value=1e-08 Score=97.88 Aligned_cols=134 Identities=24% Similarity=0.436 Sum_probs=92.5
Q ss_pred hHHHHHHHhccc-cCCCCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEc
Q 016578 144 CAYQEMIAHLPL-CSIPSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG 221 (387)
Q Consensus 144 ~~Y~eml~~l~l-~~~~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~g 221 (387)
-.|..-+..+.+ +...+..+||+.|.|+|.++..+++. .+..+|...|+.++.++.|+++|... ++ +.++++.+.
T Consensus 23 IiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl-~~~v~~~~~ 99 (247)
T PF08704_consen 23 IIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GL-DDNVTVHHR 99 (247)
T ss_dssp ---HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TC-CTTEEEEES
T ss_pred eeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CC-CCCceeEec
Confidence 345443333322 23456789999999999999999985 55679999999999999999999876 33 348999999
Q ss_pred chhh--HHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhc-cCCCeEEecccccchhhhHHHHHHHHHHH
Q 016578 222 DAVE--FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKAL-RPGGVLCNMAESMWLHTHLIEDMISICRE 294 (387)
Q Consensus 222 D~~~--~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~L-kpgGvlv~q~~s~~~~~~~~~~~~~~l~~ 294 (387)
|..+ |..+. +..+|.|++|.++||. .+..+.++| ++||++++-+.+ ..-..+....|++
T Consensus 100 Dv~~~g~~~~~-~~~~DavfLDlp~Pw~---------~i~~~~~~L~~~gG~i~~fsP~----ieQv~~~~~~L~~ 161 (247)
T PF08704_consen 100 DVCEEGFDEEL-ESDFDAVFLDLPDPWE---------AIPHAKRALKKPGGRICCFSPC----IEQVQKTVEALRE 161 (247)
T ss_dssp -GGCG--STT--TTSEEEEEEESSSGGG---------GHHHHHHHE-EEEEEEEEEESS----HHHHHHHHHHHHH
T ss_pred ceecccccccc-cCcccEEEEeCCCHHH---------HHHHHHHHHhcCCceEEEECCC----HHHHHHHHHHHHH
Confidence 9853 31122 3679999999999875 478899999 999999975433 2234455555555
No 122
>PLN02672 methionine S-methyltransferase
Probab=98.91 E-value=4.1e-08 Score=109.83 Aligned_cols=149 Identities=15% Similarity=0.055 Sum_probs=97.7
Q ss_pred ceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcc
Q 016578 126 YGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFP 205 (387)
Q Consensus 126 ~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~ 205 (387)
+|..+.++-.+-...++....-|.+...|.. ..++.+|||||||+|.++..+++..+..+|+++|||+++++.|+++..
T Consensus 85 ~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~ 163 (1082)
T PLN02672 85 KKLTMMEIPSIFIPEDWSFTFYEGLNRHPDS-IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLY 163 (1082)
T ss_pred cCCceeeCCCcccCchhHHHHHHHHHhcccc-cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 5555666644444444433333333332210 012468999999999999999987666799999999999999999976
Q ss_pred cccCC------------CCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCC-CCC----------------------Ccc
Q 016578 206 ELAVG------------FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVG----------------------PAQ 250 (387)
Q Consensus 206 ~~~~~------------~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~d-p~~----------------------~~~ 250 (387)
.+... ....|++++.+|..+.+... ..+||+||.+.+. +.. +..
T Consensus 164 ~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~ 242 (1082)
T PLN02672 164 LNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYC 242 (1082)
T ss_pred HcCcccccccccccccccccccEEEEECchhhhcccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccc
Confidence 53210 00147999999998876432 2379999988763 100 011
Q ss_pred ccch-----------HHHHHHHHHhccCCCeEEeccc
Q 016578 251 ELVE-----------KPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 251 ~L~~-----------~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
.|+. +.+++.+.+.|+|||.+++..+
T Consensus 243 AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 243 ALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 2222 4566677789999999997653
No 123
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.91 E-value=7e-09 Score=107.63 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=83.1
Q ss_pred HHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh
Q 016578 146 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 225 (387)
Q Consensus 146 Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~ 225 (387)
+..++..++. .+..+|||||||+|.++..++++. .+|++||+++.+++.+++.... .++++++.+|+..
T Consensus 26 ~~~il~~l~~---~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~------~~~i~~~~~d~~~ 94 (475)
T PLN02336 26 RPEILSLLPP---YEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGH------YKNVKFMCADVTS 94 (475)
T ss_pred hhHHHhhcCc---cCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhcc------CCceEEEEecccc
Confidence 3444444432 345699999999999999999874 5899999999999988764321 3589999999864
Q ss_pred HHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 226 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 226 ~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
.....++++||+|++...-...+.. -..++++.+++.|+|||++++.
T Consensus 95 ~~~~~~~~~fD~I~~~~~l~~l~~~--~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 95 PDLNISDGSVDLIFSNWLLMYLSDK--EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred cccCCCCCCEEEEehhhhHHhCCHH--HHHHHHHHHHHhcCCCeEEEEE
Confidence 2212345689999986543222211 0246899999999999998763
No 124
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.90 E-value=2.6e-09 Score=101.23 Aligned_cols=121 Identities=17% Similarity=0.309 Sum_probs=84.1
Q ss_pred cchhHHHHHHHhccccCCCC-----CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCC-
Q 016578 141 KDECAYQEMIAHLPLCSIPS-----PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDP- 214 (387)
Q Consensus 141 ~de~~Y~eml~~l~l~~~~~-----p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~- 214 (387)
|-.|++.....+.+-.. |. .++|||+|||+|.++..+++.+ +.|+++|+++++|+.|+++ ..+...++.+
T Consensus 66 Rl~fi~d~~~~~v~~~~-p~~k~~~g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h-~~~dP~~~~~~ 141 (282)
T KOG1270|consen 66 RLPFIRDDLRNRVNNHA-PGSKPLLGMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEH-KKMDPVLEGAI 141 (282)
T ss_pred hhhHHHHHHHhcccccC-CCccccCCceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHh-hhcCchhcccc
Confidence 33455655555553321 22 3689999999999999999986 7999999999999999998 4332111211
Q ss_pred --CEEEEEcchhhHHhhCCCCCeeEEEEcCC-CCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 215 --RVRLHIGDAVEFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 215 --rv~v~~gD~~~~l~~~~~~~fDvII~D~~-dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+++...|+... .++||+|++.-- .+... -.+|.+.+.+.|+|+|.+.+.+
T Consensus 142 ~y~l~~~~~~~E~~-----~~~fDaVvcsevleHV~d-----p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 142 AYRLEYEDTDVEGL-----TGKFDAVVCSEVLEHVKD-----PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred ceeeehhhcchhhc-----ccccceeeeHHHHHHHhC-----HHHHHHHHHHHhCCCCceEeee
Confidence 566777776543 356999996421 12211 3479999999999999988644
No 125
>PHA03412 putative methyltransferase; Provisional
Probab=98.89 E-value=1e-08 Score=96.90 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=74.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhcC---CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 160 SPKTVLVVGGGDGGVLREISRHD---SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~---~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
...+|||+|||+|.++..+++.. +..+|++||||+.+++.|+++++ +++++.+|+..+. . +++||
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~---------~~~~~~~D~~~~~--~-~~~FD 116 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP---------EATWINADALTTE--F-DTLFD 116 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc---------CCEEEEcchhccc--c-cCCcc
Confidence 36799999999999999998752 24589999999999999998753 5789999987642 2 45899
Q ss_pred EEEEcCCCCCCC-c-------cccchHHHHHHHHHhccCCCeEEe
Q 016578 237 AIIVDSSDPVGP-A-------QELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 237 vII~D~~dp~~~-~-------~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+||++++..... . ..++...+++.+.+++++|+ +++
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 999998753211 1 11344568888888555555 454
No 126
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.89 E-value=2.1e-08 Score=99.36 Aligned_cols=118 Identities=18% Similarity=0.198 Sum_probs=82.3
Q ss_pred hhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcc
Q 016578 143 ECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGD 222 (387)
Q Consensus 143 e~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD 222 (387)
.+.|+..+.+++.. ..++|||||||+|..+..+++.++ ..|+++|+++.++..++..-... + .+++++++.+|
T Consensus 108 ~~k~~~l~~~l~~l---~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~--~-~~~~i~~~~~d 180 (322)
T PRK15068 108 DWKWDRVLPHLSPL---KGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLL--G-NDQRAHLLPLG 180 (322)
T ss_pred HhHHHHHHHhhCCC---CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhc--C-CCCCeEEEeCC
Confidence 34466666666432 457999999999999999998853 57999999999886543211100 0 14589999999
Q ss_pred hhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 223 AVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 223 ~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+.+.- . .++||+|++-..-.... -...+++.+++.|+|||.+++.
T Consensus 181 ~e~lp--~-~~~FD~V~s~~vl~H~~----dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 181 IEQLP--A-LKAFDTVFSMGVLYHRR----SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred HHHCC--C-cCCcCEEEECChhhccC----CHHHHHHHHHHhcCCCcEEEEE
Confidence 87642 2 46899999743221111 1246899999999999999864
No 127
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.89 E-value=2.1e-08 Score=94.72 Aligned_cols=106 Identities=22% Similarity=0.269 Sum_probs=81.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCC------ceEEEEeCCHHHHHHHHhhcccccCC-CCCCCEEEEEcchhhHHhhCCC
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSV------ELIDICEIDKMVIDVSKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPR 232 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~------~~Vt~VEiD~~vi~~ar~~~~~~~~~-~~d~rv~v~~gD~~~~l~~~~~ 232 (387)
+..+|||++||+|-++..+++|-.. .+|+++||+|.++.++++.-.+. + .+++++.++.+|+.+.. .++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~--~l~~~~~~~w~~~dAE~Lp--Fdd 175 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR--PLKASSRVEWVEGDAEDLP--FDD 175 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc--CCCcCCceEEEeCCcccCC--CCC
Confidence 4469999999999999999998555 79999999999999999986331 2 24668999999998753 457
Q ss_pred CCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 233 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 233 ~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+.||...+...-...+ .-...+++++|+|||||+|.+
T Consensus 176 ~s~D~yTiafGIRN~t----h~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVT----HIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred CcceeEEEecceecCC----CHHHHHHHHHHhcCCCcEEEE
Confidence 8999877643211111 123479999999999999874
No 128
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.88 E-value=2e-08 Score=93.59 Aligned_cols=115 Identities=15% Similarity=0.255 Sum_probs=80.7
Q ss_pred HHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh
Q 016578 146 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 225 (387)
Q Consensus 146 Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~ 225 (387)
+..++..++. ......+|||||||+|.++..+++.. .+|+++|+|+++++.|+++++... . ..++++..+|+.+
T Consensus 42 ~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~~--~-~~~i~~~~~d~~~ 115 (219)
T TIGR02021 42 RRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGRD--V-AGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--C-CCceEEEECChhh
Confidence 4455555542 12356799999999999999999864 589999999999999999876431 1 2479999999765
Q ss_pred HHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 226 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 226 ~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
. .++||+|++...-...+... ...+++.+.+.+++++++..
T Consensus 116 ~-----~~~fD~ii~~~~l~~~~~~~--~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 116 L-----CGEFDIVVCMDVLIHYPASD--MAKALGHLASLTKERVIFTF 156 (219)
T ss_pred C-----CCCcCEEEEhhHHHhCCHHH--HHHHHHHHHHHhCCCEEEEE
Confidence 3 25899998632211111111 23578888888887766664
No 129
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.87 E-value=5.8e-08 Score=95.27 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCC-CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCC---CC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR---GK 234 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~-~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~---~~ 234 (387)
+.+.+|||+|||+|..++.+++... ..++++||+|+++++.+++.+... +..-++..+++|..+.+.-... ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---YPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh---CCCceEEEEEEcccchhhhhcccccCC
Confidence 3557899999999999999998753 468999999999999999887532 1123567789998764322111 12
Q ss_pred eeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 235 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 235 fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
..+++.+++...-+.. -...+++.++++|+|||.|++-.
T Consensus 139 ~~~~~~gs~~~~~~~~--e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 139 RLGFFPGSTIGNFTPE--EAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred eEEEEecccccCCCHH--HHHHHHHHHHHhcCCCCEEEEec
Confidence 3344444443322221 13569999999999999998643
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.87 E-value=2.4e-08 Score=102.50 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
....+|||+|||.|+.+..+++..+..+|+++|+++..++.+++++... ++. .++++..+|+.........++||.|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~--g~~-~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL--GLT-IKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc--CCC-eEEEEeccccccccccccccccCEE
Confidence 3457999999999999999998754569999999999999999998765 222 2444566776543211124579999
Q ss_pred EEcCCC-CCCC----cccc-------------chHHHHHHHHHhccCCCeEEecccccc
Q 016578 239 IVDSSD-PVGP----AQEL-------------VEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 239 I~D~~d-p~~~----~~~L-------------~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
++|++- ..+. ++-. .+.++++.+.+.|+|||.|+..+.+..
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 999653 1221 1100 146789999999999999997766543
No 131
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.86 E-value=1.3e-08 Score=93.50 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.++.++||||||.|..+..+++.+ -.|+++|+++..++.+++..... +-.++....|..++- . ++.||+|
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~--~-~~~yD~I 98 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFD--F-PEEYDFI 98 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS----TTTEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhcc--c-cCCcCEE
Confidence 467899999999999999999986 58999999999999888765433 235888999976652 2 4589999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
++......-+.+ .-+..++.+++.++|||++++.
T Consensus 99 ~st~v~~fL~~~--~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 99 VSTVVFMFLQRE--LRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEESSGGGS-GG--GHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEeccCCHH--HHHHHHHHHHhhcCCcEEEEEE
Confidence 965433222222 1356899999999999997753
No 132
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.86 E-value=1.6e-08 Score=94.90 Aligned_cols=117 Identities=22% Similarity=0.271 Sum_probs=81.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCC---CC------------------------
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVG---FE------------------------ 212 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~---~~------------------------ 212 (387)
.++.+|||||-.|.++..++++.+...|.+||||+..|+.|+++++....- ..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 577999999999999999999988889999999999999999987654210 00
Q ss_pred -----------CCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCcc--ccchHHHHHHHHHhccCCCeEEecccccc
Q 016578 213 -----------DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQ--ELVEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 213 -----------d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~--~L~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
..|..+-.. +|+. ....+||+|++-+-.-|...+ .---..||+.+.+.|.|||+|++. .-+|
T Consensus 138 t~~~p~n~~f~~~n~vle~~---dfl~-~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE-PQpW 212 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESD---DFLD-MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE-PQPW 212 (288)
T ss_pred cccCCcchhcccccEEEecc---hhhh-hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc-CCch
Confidence 011222222 3442 235689999976544332211 111346999999999999999973 3456
Q ss_pred hh
Q 016578 280 LH 281 (387)
Q Consensus 280 ~~ 281 (387)
..
T Consensus 213 ks 214 (288)
T KOG2899|consen 213 KS 214 (288)
T ss_pred HH
Confidence 54
No 133
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=4e-08 Score=101.08 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+..+|||+|||+|+.+..++... +..+|+++|+++..++.+++++... ++ .+++++.+|+..+.... +++||.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--g~--~~v~~~~~Da~~l~~~~-~~~fD~ 310 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--KL--SSIEIKIADAERLTEYV-QDTFDR 310 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--CC--CeEEEEECchhhhhhhh-hccCCE
Confidence 456799999999999999988763 3469999999999999999998765 22 35899999998753222 457999
Q ss_pred EEEcCCC-CCCC----ccc-------------cchHHHHHHHHHhccCCCeEEeccccc
Q 016578 238 IIVDSSD-PVGP----AQE-------------LVEKPFFDTIAKALRPGGVLCNMAESM 278 (387)
Q Consensus 238 II~D~~d-p~~~----~~~-------------L~~~ef~~~l~~~LkpgGvlv~q~~s~ 278 (387)
|++|++. ..+. ++. -.+.+.+..+.+.|+|||+++..+.+.
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999764 1221 100 134677899999999999998766553
No 134
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.85 E-value=2.5e-08 Score=93.53 Aligned_cols=104 Identities=21% Similarity=0.253 Sum_probs=80.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
+..+||+||||+|.++..+++.. .+|+++|+++.+++.+++++... ..+++++.+|..++.... .++||+|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~fD~Ii 119 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALES-----GLKIDYRQTTAEELAAEH-PGQFDVVT 119 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHc-----CCceEEEecCHHHhhhhc-CCCccEEE
Confidence 46699999999999999998874 58999999999999999987643 236788889988775433 46899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+...-...+. ..++++.+.+.|+|||.+++..
T Consensus 120 ~~~~l~~~~~----~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 120 CMEMLEHVPD----PASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EhhHhhccCC----HHHHHHHHHHHcCCCcEEEEEe
Confidence 7533221111 2468899999999999988643
No 135
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.85 E-value=1.8e-08 Score=94.16 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccc--c------CCCCCCCEEEEEcchhhHHhhC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL--A------VGFEDPRVRLHIGDAVEFLRQV 230 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~--~------~~~~d~rv~v~~gD~~~~l~~~ 230 (387)
+...+||++|||.|..+..+++++ -+|++||+++..++.+.+..... . ......+++++++|.+++-...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 455799999999999999999985 58999999999999864321100 0 0012457999999998763221
Q ss_pred CCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 231 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 231 ~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
.++||.|+-......-++. ....+++.+.++|+|||++++
T Consensus 111 -~~~fD~i~D~~~~~~l~~~--~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 111 -LGPVDAVYDRAALIALPEE--MRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -CCCcCEEEechhhccCCHH--HHHHHHHHHHHHcCCCCeEEE
Confidence 3479988743322111111 134689999999999997543
No 136
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=4.3e-08 Score=100.91 Aligned_cols=115 Identities=18% Similarity=0.313 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh--CCCCCe
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ--VPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~--~~~~~f 235 (387)
.+..+|||+|||.|+.+..+++. .+..+|+++|+++..++.+++++... ++ .+++++.+|+.++... ...++|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--g~--~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--GL--KSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--CC--CeEEEEeCChhhcccccccccccC
Confidence 45679999999999999999876 33458999999999999999998765 22 3599999999876421 113589
Q ss_pred eEEEEcCCCC-CCC----ccc-------------cchHHHHHHHHHhccCCCeEEecccc
Q 016578 236 DAIIVDSSDP-VGP----AQE-------------LVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 236 DvII~D~~dp-~~~----~~~-------------L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
|.|++|.+-. .+. ++. -.+.++++.+.+.|+|||+|+..+.+
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9999997631 111 110 01467899999999999999865544
No 137
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.84 E-value=3.6e-08 Score=97.38 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=81.0
Q ss_pred hHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHH---hhcccccCCCCCCCEEEEE
Q 016578 144 CAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSK---KYFPELAVGFEDPRVRLHI 220 (387)
Q Consensus 144 ~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar---~~~~~~~~~~~d~rv~v~~ 220 (387)
..|...+.++.. .+.++|||||||+|..+..+++.. ...|+++|+++.++..++ +++. .+.++.+..
T Consensus 108 ~~~~~~l~~l~~---~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~------~~~~v~~~~ 177 (314)
T TIGR00452 108 IKWDRVLPHLSP---LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD------NDKRAILEP 177 (314)
T ss_pred HHHHHHHHhcCC---CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc------cCCCeEEEE
Confidence 445666666533 346799999999999999988875 358999999999886543 3322 245788888
Q ss_pred cchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 221 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 221 gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
.|..+.. . .+.||+|++...-...+. -.++++.++++|+|||.|++.
T Consensus 178 ~~ie~lp-~--~~~FD~V~s~gvL~H~~d----p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 178 LGIEQLH-E--LYAFDTVFSMGVLYHRKS----PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCHHHCC-C--CCCcCEEEEcchhhccCC----HHHHHHHHHHhcCCCCEEEEE
Confidence 8876542 1 347999997643211111 236899999999999999864
No 138
>PTZ00146 fibrillarin; Provisional
Probab=98.84 E-value=1e-07 Score=92.83 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=94.9
Q ss_pred hccccCCCCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHh-h
Q 016578 152 HLPLCSIPSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLR-Q 229 (387)
Q Consensus 152 ~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~-~ 229 (387)
.+..+...+..+|||||||+|..+..+++.- +...|++||+++.+.+...+.... .+++..+++|+..-.. .
T Consensus 124 g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------r~NI~~I~~Da~~p~~y~ 197 (293)
T PTZ00146 124 GVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------RPNIVPIIEDARYPQKYR 197 (293)
T ss_pred CcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCCEEEECCccChhhhh
Confidence 3443434556799999999999999999873 345899999998755433332221 2478899999864210 1
Q ss_pred CCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec--ccccchhh---hHHHHHHHHHHHH-cCCCcceE
Q 016578 230 VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM--AESMWLHT---HLIEDMISICRET-FKGSVHYA 303 (387)
Q Consensus 230 ~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q--~~s~~~~~---~~~~~~~~~l~~~-F~~~v~~~ 303 (387)
...+.+|+|++|...|.. ...+...+.+.|||||.|++. ..+....+ ..+.+-.+.+++. |. .+..
T Consensus 198 ~~~~~vDvV~~Dva~pdq------~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~-~~e~- 269 (293)
T PTZ00146 198 MLVPMVDVIFADVAQPDQ------ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLK-PKEQ- 269 (293)
T ss_pred cccCCCCEEEEeCCCcch------HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCc-eEEE-
Confidence 123479999999865432 223556789999999998862 22222211 2233334667765 76 3332
Q ss_pred EEEeeccCCCcEEEEEEec
Q 016578 304 WASVPTYPSGIIGFLICST 322 (387)
Q Consensus 304 ~~~iPtyp~g~~gf~~ask 322 (387)
..++-|... -.++++..
T Consensus 270 -v~L~Py~~~-h~~v~~~~ 286 (293)
T PTZ00146 270 -LTLEPFERD-HAVVIGVY 286 (293)
T ss_pred -EecCCccCC-cEEEEEEE
Confidence 344445433 33445443
No 139
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.82 E-value=2.2e-08 Score=87.36 Aligned_cols=96 Identities=26% Similarity=0.394 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
++..+|||||||+|.+++.+.+.+ .+++++|+++.+++. .+ +.....+..... .++++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~~~--~~~~~fD~i 82 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RN------------VVFDNFDAQDPP--FPDGSFDLI 82 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TT------------SEEEEEECHTHH--CHSSSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hh------------hhhhhhhhhhhh--ccccchhhH
Confidence 677899999999999999997775 399999999999988 11 111112111211 125689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
++...-..-+ --..+++.+.+.|+|||++++...
T Consensus 83 ~~~~~l~~~~----d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 83 ICNDVLEHLP----DPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp EEESSGGGSS----HHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hhHHHHhhcc----cHHHHHHHHHHhcCCCCEEEEEEc
Confidence 9765432222 135799999999999999987553
No 140
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.81 E-value=5.7e-08 Score=101.86 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=94.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
+..-+||||||.|..+.++++..+...+++||+....+..+.+..... + -.|+.++.+|+..+....++++.|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~--~--l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ--N--ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc--C--CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 345799999999999999999888889999999998877776654332 2 247888989876655555667899999
Q ss_pred EcCCCCCCC----ccccchHHHHHHHHHhccCCCeEEeccccc
Q 016578 240 VDSSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMAESM 278 (387)
Q Consensus 240 ~D~~dp~~~----~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~ 278 (387)
+..+|||.- ...+.+++|++.+++.|+|||.+-+.+++.
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 999999943 456899999999999999999998877553
No 141
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.80 E-value=5.2e-08 Score=100.53 Aligned_cols=116 Identities=14% Similarity=0.149 Sum_probs=84.8
Q ss_pred hhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcc
Q 016578 143 ECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGD 222 (387)
Q Consensus 143 e~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD 222 (387)
+..|.+++..+.. .+..+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++.... + .+++++.+|
T Consensus 283 e~l~~~vl~~l~~---~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~--~--~~v~~~~~d 353 (443)
T PRK13168 283 QKMVARALEWLDP---QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG--L--DNVTFYHAN 353 (443)
T ss_pred HHHHHHHHHHhcC---CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC--C--CceEEEEeC
Confidence 3345555554432 345799999999999999999874 699999999999999999876542 2 369999999
Q ss_pred hhhHHhh--CCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 223 AVEFLRQ--VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 223 ~~~~l~~--~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+.+++.. ..+++||+|++|++... . .+.++.+.+ ++|++++.+..
T Consensus 354 ~~~~l~~~~~~~~~fD~Vi~dPPr~g-~------~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 354 LEEDFTDQPWALGGFDKVLLDPPRAG-A------AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hHHhhhhhhhhcCCCCEEEECcCCcC-h------HHHHHHHHh-cCCCeEEEEEe
Confidence 9887643 12357999999876421 1 135555555 68988877643
No 142
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.80 E-value=4.4e-08 Score=91.06 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..+.+|||||||+|.++..+++.. .+++++|+++.+++.+++++.... ..++++..+|+.++.... .++||+|
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~-~~~~D~i 116 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKG-AKSFDVV 116 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCC-CCCccEE
Confidence 347799999999999999988864 469999999999999999876431 126889999988876433 3689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
++...-.... -...+++.+.+.|+|||.+++..
T Consensus 117 ~~~~~l~~~~----~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 117 TCMEVLEHVP----DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred EehhHHHhCC----CHHHHHHHHHHhcCCCcEEEEEe
Confidence 9753221111 12468999999999999887643
No 143
>PRK05785 hypothetical protein; Provisional
Probab=98.79 E-value=7.8e-08 Score=90.62 Aligned_cols=91 Identities=11% Similarity=0.101 Sum_probs=69.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
.+.+|||||||+|.+++.+++.. ..+|+++|++++|++.|++.. +.+++|+.+. ..++++||+|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~l--p~~d~sfD~v~ 115 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEAL--PFRDKSFDVVM 115 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhhC--CCCCCCEEEEE
Confidence 46799999999999999999874 359999999999999998641 2456787653 23467899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCC
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGG 269 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgG 269 (387)
+...-...+ -....+++++++|+|.+
T Consensus 116 ~~~~l~~~~----d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 116 SSFALHASD----NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ecChhhccC----CHHHHHHHHHHHhcCce
Confidence 865432211 13468999999999954
No 144
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.78 E-value=4.5e-08 Score=91.86 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhh--ccccc------CCCCCCCEEEEEcchhhHHhhC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKY--FPELA------VGFEDPRVRLHIGDAVEFLRQV 230 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~--~~~~~------~~~~d~rv~v~~gD~~~~l~~~ 230 (387)
++..+||++|||.|..+..++.++ .+|++||+++..++.+.+. +.... ..+...+++++++|.+++....
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 345699999999999999999985 6899999999999976432 11000 0123568999999998864321
Q ss_pred CCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEE
Q 016578 231 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 272 (387)
Q Consensus 231 ~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv 272 (387)
...||.|+--.....-++. ....+++.+.++|+|||+++
T Consensus 114 -~~~fd~v~D~~~~~~l~~~--~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 114 -LADVDAVYDRAALIALPEE--MRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred -CCCeeEEEehHhHhhCCHH--HHHHHHHHHHHHcCCCCeEE
Confidence 2479988843221111111 14569999999999998633
No 145
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.76 E-value=2.4e-07 Score=95.18 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC--CCCCee
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~--~~~~fD 236 (387)
.+..+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++.... -.+++++.+|+.+++... ..+.||
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 345799999999999999999874 689999999999999999986542 247999999998876542 234799
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+|++|.+.. +. ..++++.+. .|+|++++.+
T Consensus 365 ~vi~dPPr~-G~-----~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 365 VLLLDPPRK-GC-----AAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred EEEECcCCC-CC-----CHHHHHHHH-hcCCCEEEEE
Confidence 999998642 21 235676655 4899887765
No 146
>PRK06202 hypothetical protein; Provisional
Probab=98.76 E-value=4.3e-08 Score=92.22 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc----CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH----DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGK 234 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~----~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~ 234 (387)
.++.+|||||||+|.++..+++. ++..+|+++|+++.+++.|++.... +++++...|+.... . .+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l~-~-~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDELV-A-EGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEeccccc-c-cCCC
Confidence 46679999999999999988753 2345899999999999999987542 34666666554332 2 3568
Q ss_pred eeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEE
Q 016578 235 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 272 (387)
Q Consensus 235 fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv 272 (387)
||+|++...-...+... ...+++.+.+.++ +++++
T Consensus 130 fD~V~~~~~lhh~~d~~--~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAE--VVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ccEEEECCeeecCChHH--HHHHHHHHHHhcC-eeEEE
Confidence 99999875432222111 2468999999988 44444
No 147
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.75 E-value=2.4e-08 Score=93.72 Aligned_cols=108 Identities=18% Similarity=0.227 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 158 IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 158 ~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
++..+.++|+|||+|..++-++.|+ ++|+++|+++.++++++++.+..- .+...++...|..+++.. +++.|+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y---~~t~~~ms~~~~v~L~g~--e~SVDl 103 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTY---CHTPSTMSSDEMVDLLGG--EESVDL 103 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCccc---ccCCccccccccccccCC--Ccceee
Confidence 4555589999999999999999996 799999999999999999876532 233344555555555432 578999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCC-eEEecccc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGG-VLCNMAES 277 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgG-vlv~q~~s 277 (387)
|++--.-++.. .++||+.+++.||++| +++++..+
T Consensus 104 I~~Aqa~HWFd-----le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 104 ITAAQAVHWFD-----LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ehhhhhHHhhc-----hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 99754444433 3569999999998877 77776543
No 148
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.74 E-value=9.5e-08 Score=89.06 Aligned_cols=113 Identities=16% Similarity=0.277 Sum_probs=75.3
Q ss_pred HHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHH
Q 016578 148 EMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL 227 (387)
Q Consensus 148 eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l 227 (387)
.++..++....++..+|||||||+|.++..++++. .+|+++|+++.+++.|++++.... . ..+++++.+|. +.
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~--~-~~~i~~~~~d~-~~- 123 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG--L-AGNITFEVGDL-ES- 123 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC--C-ccCcEEEEcCc-hh-
Confidence 33444433223456799999999999999999875 469999999999999999876531 1 24899999993 22
Q ss_pred hhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEE
Q 016578 228 RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 272 (387)
Q Consensus 228 ~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv 272 (387)
..+.||+|++...-...+... ....++.+.+.+++++++.
T Consensus 124 ---~~~~fD~v~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 124 ---LLGRFDTVVCLDVLIHYPQED--AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred ---ccCCcCEEEEcchhhcCCHHH--HHHHHHHHHhhcCCeEEEE
Confidence 146799999653321112111 2346677777665444443
No 149
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.74 E-value=1.9e-08 Score=93.54 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=84.3
Q ss_pred EcCeEeecccchhHHHHHHHhccccC---CCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccccc
Q 016578 132 LDGIVQLTEKDECAYQEMIAHLPLCS---IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA 208 (387)
Q Consensus 132 lDG~~q~~e~de~~Y~eml~~l~l~~---~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~ 208 (387)
|.|..+.++.|-..-...|..+.... .....++||+|+|-|.++..++-+. ..+|++||..+..++.|++++...
T Consensus 24 LGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~- 101 (218)
T PF05891_consen 24 LGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD- 101 (218)
T ss_dssp TTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG-
T ss_pred ccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc-
Confidence 45666666667555566666654432 1345699999999999999886553 479999999999999999998652
Q ss_pred CCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 209 VGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 209 ~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
.+...++++.-..+|..+ +.+||+|.+--.-..-.... -.+|++.|++.|+|+|++++
T Consensus 102 ---~~~v~~~~~~gLQ~f~P~--~~~YDlIW~QW~lghLTD~d--lv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 102 ---NPRVGEFYCVGLQDFTPE--EGKYDLIWIQWCLGHLTDED--LVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp ---GCCEEEEEES-GGG------TT-EEEEEEES-GGGS-HHH--HHHHHHHHHHHEEEEEEEEE
T ss_pred ---CCCcceEEecCHhhccCC--CCcEeEEEehHhhccCCHHH--HHHHHHHHHHhCcCCcEEEE
Confidence 123356666666666432 46899999864321111111 24589999999999999985
No 150
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.73 E-value=1.5e-07 Score=92.88 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=77.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
.+.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++... ++ ++++++.+|+.++.... .++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~--~l--~~v~~~~~D~~~~~~~~-~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAEL--GL--TNVQFQALDSTQFATAQ-GEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHc--CC--CceEEEEcCHHHHHHhc-CCCCeEEE
Confidence 45799999999999999999864 69999999999999999998655 22 47999999999887533 35799999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|++-. +. ..+..+.+ ..++|++++.+.+
T Consensus 246 ~dPPr~-G~-----~~~~~~~l-~~~~~~~ivyvsc 274 (315)
T PRK03522 246 VNPPRR-GI-----GKELCDYL-SQMAPRFILYSSC 274 (315)
T ss_pred ECCCCC-Cc-----cHHHHHHH-HHcCCCeEEEEEC
Confidence 997531 11 22344443 3467887776543
No 151
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.4e-07 Score=86.00 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=85.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCC-CeeEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG-KYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~-~fDvI 238 (387)
...++||+-+|+|+++.|++.++ ..+++.||.|...+...++++..... ..+.+++..|+..+++..... .||+|
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~---~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGL---EGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC---ccceEEEeecHHHHHHhcCCCCcccEE
Confidence 56799999999999999999885 68999999999999999999876632 468999999999988765322 49999
Q ss_pred EEcCCCCCCCccccchHHHHHH--HHHhccCCCeEEeccc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDT--IAKALRPGGVLCNMAE 276 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~--l~~~LkpgGvlv~q~~ 276 (387)
++|++...+.... ..-+.. -...|+|+|.+++..+
T Consensus 119 flDPPy~~~l~~~---~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 119 FLDPPYAKGLLDK---ELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred EeCCCCccchhhH---HHHHHHHHhcCCcCCCcEEEEEeC
Confidence 9999876443211 112223 3457999999997543
No 152
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.72 E-value=6.1e-08 Score=88.60 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
+...||||||||+|.++..+.+.. ..+..+||||++-+..|.++ -+.++.+|+.+.|...++++||.|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccEE
Confidence 456899999999999999888764 46899999999988887664 467999999999988888999999
Q ss_pred EEcCC
Q 016578 239 IVDSS 243 (387)
Q Consensus 239 I~D~~ 243 (387)
|+.-+
T Consensus 80 Ilsqt 84 (193)
T PF07021_consen 80 ILSQT 84 (193)
T ss_pred ehHhH
Confidence 97644
No 153
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.3e-07 Score=86.04 Aligned_cols=93 Identities=23% Similarity=0.355 Sum_probs=74.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
..+.|+|+|||+|.++..++-.+ ..+|++||+|++.++.++++..+. ..+++++++|+.++ ..++|.+|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~-----~~~~dtvi 113 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF-----RGKFDTVI 113 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc-----CCccceEE
Confidence 56689999999999999888774 579999999999999999998764 34899999998776 46899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhc
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKAL 265 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~L 265 (387)
+|++.... ..--..+|+....+.-
T Consensus 114 mNPPFG~~--~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 114 MNPPFGSQ--RRHADRPFLLKALEIS 137 (198)
T ss_pred ECCCCccc--cccCCHHHHHHHHHhh
Confidence 98865432 2224567887776653
No 154
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.72 E-value=1e-07 Score=96.62 Aligned_cols=101 Identities=23% Similarity=0.375 Sum_probs=82.2
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 240 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~ 240 (387)
..+|||++||+|..+..+++..+..+|+++|+|+..++.+++++..+. + .+++++.+|+.+++.. .++||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~--~--~~~~v~~~Da~~~l~~--~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG--L--ENEKVFNKDANALLHE--ERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--C--CceEEEhhhHHHHHhh--cCCCCEEEE
Confidence 358999999999999999887556799999999999999999986552 2 3577999999988754 357999999
Q ss_pred cCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 241 DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 241 D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|++ +. ..+|+..+.+.++++|++.+.+
T Consensus 132 DP~---Gs-----~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 132 DPF---GS-----PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CCC---CC-----cHHHHHHHHHHhcCCCEEEEEe
Confidence 875 32 1358888888899999998654
No 155
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=6.2e-08 Score=89.04 Aligned_cols=102 Identities=19% Similarity=0.288 Sum_probs=77.3
Q ss_pred CEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEE-EEEcchhhHHhhCCCCCeeEEEE
Q 016578 162 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVR-LHIGDAVEFLRQVPRGKYDAIIV 240 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~-v~~gD~~~~l~~~~~~~fDvII~ 240 (387)
..||++|||+|..-...-- .+..+||++|.++.|-+.+.+.+.+. ..++++ ++++|+.+.. +.++.+||+|+.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~-~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLP-QLADGSYDTVVC 151 (252)
T ss_pred cceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCc-ccccCCeeeEEE
Confidence 3789999999987665432 25789999999999999999987765 456787 9999998753 445789999995
Q ss_pred cCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 241 DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 241 D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
..---... -..+.++.+++.|+|||++++
T Consensus 152 TlvLCSve----~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 152 TLVLCSVE----DPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred EEEEeccC----CHHHHHHHHHHhcCCCcEEEE
Confidence 43210000 124579999999999999886
No 156
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.69 E-value=1.9e-07 Score=94.46 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=79.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
...+|||+|||+|.++.+++... .+|++||+|+..++.|++++.... . .+++++.+|+.+++... .++||+||
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~--~--~~~~~~~~d~~~~~~~~-~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLG--L--DNLSFAALDSAKFATAQ-MSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcC--C--CcEEEEECCHHHHHHhc-CCCCCEEE
Confidence 34699999999999999999753 689999999999999999986652 2 37999999999887543 24699999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|++-. +. ..++++.+. .++|++++.+..
T Consensus 306 ~DPPr~-G~-----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 306 VNPPRR-GI-----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ECCCCC-CC-----cHHHHHHHH-hcCCCeEEEEEe
Confidence 998742 21 234666665 479999887643
No 157
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.69 E-value=4.8e-08 Score=94.22 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=74.1
Q ss_pred CCCEEEEEcCcccH----HHHHHHhcCC-----CceEEEEeCCHHHHHHHHhhccc-ccC-CC-----------------
Q 016578 160 SPKTVLVVGGGDGG----VLREISRHDS-----VELIDICEIDKMVIDVSKKYFPE-LAV-GF----------------- 211 (387)
Q Consensus 160 ~p~~VL~IG~G~G~----~~~el~k~~~-----~~~Vt~VEiD~~vi~~ar~~~~~-~~~-~~----------------- 211 (387)
.+.+||++|||+|. ++..++++.+ ..+|+++|+|+.+++.|++.... ... ++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 4555555422 35899999999999999985311 000 00
Q ss_pred -C---CCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 212 -E---DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 212 -~---d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
. ..+|++...|..+.. .+.++||+|++-..-..-+. -....+++.++++|+|||+|++
T Consensus 179 v~~~ir~~V~F~~~dl~~~~--~~~~~fD~I~crnvl~yf~~--~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES--PPLGDFDLIFCRNVLIYFDE--PTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred EChHHhCcCEEeeccCCCCC--CccCCCCEEEechhHHhCCH--HHHHHHHHHHHHHhCCCeEEEE
Confidence 0 137889999987632 12568999997422111111 1134689999999999999986
No 158
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.67 E-value=4.1e-07 Score=89.93 Aligned_cols=137 Identities=15% Similarity=0.175 Sum_probs=83.9
Q ss_pred HHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccC-CCCCCCEEEEEcchh
Q 016578 146 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAV-GFEDPRVRLHIGDAV 224 (387)
Q Consensus 146 Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~-~~~d~rv~v~~gD~~ 224 (387)
+..++..+......++.+|||||||+|.++..+++.. .+|+++|+++.+++.++++++.... .....++++..+|..
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3444444432111245799999999999999999874 5899999999999999998764311 012346888889965
Q ss_pred hHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcC
Q 016578 225 EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 297 (387)
Q Consensus 225 ~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~ 297 (387)
+. +++||+|++-..-...+... ...+++.+.+ +.++|+++......+ ...+++.+.+.|+
T Consensus 208 ~l-----~~~fD~Vv~~~vL~H~p~~~--~~~ll~~l~~-l~~g~liIs~~p~~~-----~~~~l~~~g~~~~ 267 (315)
T PLN02585 208 SL-----SGKYDTVTCLDVLIHYPQDK--ADGMIAHLAS-LAEKRLIISFAPKTL-----YYDILKRIGELFP 267 (315)
T ss_pred hc-----CCCcCEEEEcCEEEecCHHH--HHHHHHHHHh-hcCCEEEEEeCCcch-----HHHHHHHHHhhcC
Confidence 42 36899998542211111111 1245666664 567777764333222 2233444455565
No 159
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=2.9e-07 Score=85.97 Aligned_cols=121 Identities=21% Similarity=0.316 Sum_probs=93.3
Q ss_pred ecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCE
Q 016578 138 LTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRV 216 (387)
Q Consensus 138 ~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv 216 (387)
...+++..+-.|+..+ -+++++|+||.-+|..+..++.. +...+|+++|+|++..+++.+..... + -+.++
T Consensus 56 ~v~~d~g~fl~~li~~-----~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a--g-v~~KI 127 (237)
T KOG1663|consen 56 LVGPDKGQFLQMLIRL-----LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA--G-VDHKI 127 (237)
T ss_pred ecChHHHHHHHHHHHH-----hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc--c-cccee
Confidence 3345555555666554 47899999999999999888764 66779999999999999997765432 1 25699
Q ss_pred EEEEcchhhHHhhC----CCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 217 RLHIGDAVEFLRQV----PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 217 ~v~~gD~~~~l~~~----~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+++++++.+-|.+. +.++||.+++|..-. .|. .+|+.+.+.|++||++++
T Consensus 128 ~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~------nY~-~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 128 TFIEGPALESLDELLADGESGTFDFAFVDADKD------NYS-NYYERLLRLLRVGGVIVV 181 (237)
T ss_pred eeeecchhhhHHHHHhcCCCCceeEEEEccchH------HHH-HHHHHHHhhcccccEEEE
Confidence 99999998876543 356899999997532 223 699999999999999985
No 160
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.65 E-value=3.5e-07 Score=81.56 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=89.2
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 225 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~ 225 (387)
+.|+..+.. .....||++|.|+|-+++.++++. ..+.++++|.|++.+....+.++ .++++.||+++
T Consensus 38 ~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---------~~~ii~gda~~ 105 (194)
T COG3963 38 RKMASVIDP---ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---------GVNIINGDAFD 105 (194)
T ss_pred HHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---------Cccccccchhh
Confidence 556655432 355689999999999999999884 34689999999999999999875 35689999875
Q ss_pred ---HHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 226 ---FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 226 ---~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
++.+..+..||.||+..+--.-|.. -+-+.++.+...|..||.++.-...
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~--~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMH--RRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHH--HHHHHHHHHHHhcCCCCeEEEEEec
Confidence 3555566789999987664333321 2457899999999999999865443
No 161
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.64 E-value=1.8e-07 Score=86.61 Aligned_cols=128 Identities=23% Similarity=0.355 Sum_probs=85.4
Q ss_pred ceeEEEEcC-eEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhc
Q 016578 126 YGKVLVLDG-IVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYF 204 (387)
Q Consensus 126 ~G~~L~lDG-~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~ 204 (387)
.|-.+.+|- .+.++.+....-+.+ +.. ..+.+.|||+.||-|.++..++++...+.|.++|++|..++..+++.
T Consensus 71 ~G~~f~~D~~kvyfs~rl~~Er~Ri-~~~----v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 71 NGIRFKVDLSKVYFSPRLSTERRRI-ANL----VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp TTEEEEEETTTS---GGGHHHHHHH-HTC------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHH
T ss_pred CCEEEEEccceEEEccccHHHHHHH-Hhc----CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHH
Confidence 677777773 333333332212222 222 25678999999999999999999777789999999999999999998
Q ss_pred ccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEE
Q 016578 205 PELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 272 (387)
Q Consensus 205 ~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv 272 (387)
..+. ++ .++.++.+|+++++. .+.||-||++.+.. +.+|+..+.+++++||++.
T Consensus 146 ~lNk--v~-~~i~~~~~D~~~~~~---~~~~drvim~lp~~--------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 146 RLNK--VE-NRIEVINGDAREFLP---EGKFDRVIMNLPES--------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHTT---T-TTEEEEES-GGG------TT-EEEEEE--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred HHcC--CC-CeEEEEcCCHHHhcC---ccccCEEEECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence 7653 33 589999999999986 46899999987531 2358999999999999875
No 162
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.59 E-value=1.8e-07 Score=88.49 Aligned_cols=98 Identities=26% Similarity=0.319 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
++.++|||||||.|..+..+++..|..+++++|+ |.|++.+++ .+|++++-+|.+ ...+ . +|+|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P-~-~D~~ 162 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLP-V-ADVY 162 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCS-S-ESEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhc-c-ccce
Confidence 5667999999999999999999878889999999 999999988 259999999976 3343 3 9999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCC--CeEEec
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPG--GVLCNM 274 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~Lkpg--Gvlv~q 274 (387)
++--.-+..+.+. ....++.++++|+|| |.|++.
T Consensus 163 ~l~~vLh~~~d~~--~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 163 LLRHVLHDWSDED--CVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEESSGGGS-HHH--HHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeehhhhhcchHH--HHHHHHHHHHHhCCCCCCeEEEE
Confidence 9754433322221 346899999999998 988764
No 163
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.58 E-value=6.5e-07 Score=90.19 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=74.9
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCC---------
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP--------- 231 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~--------- 231 (387)
+.+|||++||+|.++..+++.. .+|++||+++.+++.+++++.... + .+++++.+|+.++++...
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~--~--~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG--I--DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC--C--CcEEEEECCHHHHHHHHhhcccccccc
Confidence 3579999999999999888874 699999999999999999976542 2 379999999999875421
Q ss_pred -----CCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 232 -----RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 232 -----~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
..+||+|++|++- .+. ..+.++.+.+ +++++.+.
T Consensus 281 ~~~~~~~~~D~v~lDPPR-~G~-----~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR-AGL-----DDETLKLVQA---YERILYIS 319 (362)
T ss_pred cccccCCCCCEEEECCCC-CCC-----cHHHHHHHHc---cCCEEEEE
Confidence 1259999999874 232 2345555544 67776653
No 164
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.57 E-value=3.7e-07 Score=92.19 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=83.7
Q ss_pred CEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEE
Q 016578 162 KTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 240 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~ 240 (387)
-+|||+.+|+|..+.++++. .+..+|+++|+|+..++.+++++..+. -.+++++.+|+..++... .++||+|++
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~-~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYR-NRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHh-CCCCCEEEe
Confidence 48999999999999999987 356899999999999999999987652 236899999999998764 457999999
Q ss_pred cCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 241 DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 241 D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|++ +.+ .+|++.+.+.++++|++.+.
T Consensus 121 DPf---Gs~-----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 121 DPF---GTP-----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCC---CCc-----HHHHHHHHHhcccCCEEEEE
Confidence 874 221 25999999999999998765
No 165
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.56 E-value=9.4e-07 Score=88.74 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=75.2
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC---------C
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV---------P 231 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~---------~ 231 (387)
+.+|||+|||+|.++..+++.. .+|++||+++.+++.+++++.... + .+++++.+|+.+++... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~--~--~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN--I--DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC--C--CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 3579999999999999888874 599999999999999999986542 2 36999999999988631 0
Q ss_pred -----CCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 232 -----RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 232 -----~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
..+||+|++|++. .+. ..++++.+. +|++++.+.+
T Consensus 272 ~~~~~~~~~d~v~lDPPR-~G~-----~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPR-AGL-----DPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred ccccccCCCCEEEECCCC-CCC-----cHHHHHHHH---cCCcEEEEEc
Confidence 1248999999873 332 224555554 3777777643
No 166
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.55 E-value=7e-07 Score=87.51 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=64.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
....+|||||||.|.++..+++.. .+|+++|+|+.+++.+++.+.... . .++++++.+|+.++- ...||+|
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~--~-~~~v~ii~~Dal~~~----~~~~d~V 105 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSP--L-ASKLEVIEGDALKTE----FPYFDVC 105 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcC--C-CCcEEEEECCHhhhc----ccccCEE
Confidence 355799999999999999999874 589999999999999999876431 1 358999999987742 2369999
Q ss_pred EEcCCCCCC
Q 016578 239 IVDSSDPVG 247 (387)
Q Consensus 239 I~D~~dp~~ 247 (387)
+.+.+..+.
T Consensus 106 vaNlPY~Is 114 (294)
T PTZ00338 106 VANVPYQIS 114 (294)
T ss_pred EecCCcccC
Confidence 988765443
No 167
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.53 E-value=2.9e-06 Score=84.04 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=61.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE-cchhhHHhh--CCCCCee
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQ--VPRGKYD 236 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~-gD~~~~l~~--~~~~~fD 236 (387)
...+|||||||+|++...++......+++++|||+..++.|++++.... ++ ..+++++. .|....... .+.++||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l-~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GL-NGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CC-cCcEEEEEccchhhhhhcccccCCceE
Confidence 4569999999999888877655445799999999999999999986541 12 24788864 344333322 1246899
Q ss_pred EEEEcCCCCC
Q 016578 237 AIIVDSSDPV 246 (387)
Q Consensus 237 vII~D~~dp~ 246 (387)
+|+++++...
T Consensus 192 livcNPPf~~ 201 (321)
T PRK11727 192 ATLCNPPFHA 201 (321)
T ss_pred EEEeCCCCcC
Confidence 9999987643
No 168
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.52 E-value=7.1e-07 Score=84.18 Aligned_cols=111 Identities=5% Similarity=-0.065 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccc-------c-CCCCCCCEEEEEcchhhHHhh-
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL-------A-VGFEDPRVRLHIGDAVEFLRQ- 229 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~-------~-~~~~d~rv~v~~gD~~~~l~~- 229 (387)
++..+||+.|||.|.-+..++.++ -+|++||+++..++.+.+..... . ..+...+++++++|.+++-..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 455799999999999999999985 47999999999999886632110 0 012345899999999886211
Q ss_pred CCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 230 VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 230 ~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
...++||+|+--.....-++. ....+.+.+.+.|+|||.++.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~--~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPND--LRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred cccCCcCeeeeehhHhcCCHH--HHHHHHHHHHHHhCCCcEEEE
Confidence 112579998743332222221 245799999999999998764
No 169
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.50 E-value=7.4e-07 Score=81.62 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=69.2
Q ss_pred HHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh
Q 016578 146 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 225 (387)
Q Consensus 146 Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~ 225 (387)
+.++...+ +...+|||||||+|.++..+++.. ...++++|+++++++.+++. +++++.+|+.+
T Consensus 4 ~~~i~~~i-----~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-----------~~~~~~~d~~~ 66 (194)
T TIGR02081 4 LESILNLI-----PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-----------GVNVIQGDLDE 66 (194)
T ss_pred HHHHHHhc-----CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-----------CCeEEEEEhhh
Confidence 34455444 345699999999999999988764 35789999999999988652 46788888876
Q ss_pred HHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccC
Q 016578 226 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRP 267 (387)
Q Consensus 226 ~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~Lkp 267 (387)
.+...++++||+|++...-...+. ...+++.+.+.+++
T Consensus 67 ~l~~~~~~sfD~Vi~~~~l~~~~d----~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 67 GLEAFPDKSFDYVILSQTLQATRN----PEEILDEMLRVGRH 104 (194)
T ss_pred cccccCCCCcCEEEEhhHhHcCcC----HHHHHHHHHHhCCe
Confidence 443233568999998654322111 23466666666553
No 170
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.49 E-value=1.6e-06 Score=83.21 Aligned_cols=75 Identities=16% Similarity=0.286 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+.++|||||||.|.++..+++.. .+|+++|+|+.+++.+++.+.. .++++++.+|+.++- . ..||.|
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~--~--~~~d~V 95 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD--L--PEFNKV 95 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC--c--hhceEE
Confidence 356799999999999999999984 5899999999999999998753 358999999987642 2 358999
Q ss_pred EEcCCCC
Q 016578 239 IVDSSDP 245 (387)
Q Consensus 239 I~D~~dp 245 (387)
+.+.+..
T Consensus 96 v~NlPy~ 102 (258)
T PRK14896 96 VSNLPYQ 102 (258)
T ss_pred EEcCCcc
Confidence 9887653
No 171
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.48 E-value=4.5e-08 Score=91.24 Aligned_cols=101 Identities=22% Similarity=0.357 Sum_probs=76.4
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 240 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~ 240 (387)
-+++||||||+|..+..+-.. +.++++||||..|++.|.+.=- + | ++.++|+..|+....+++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~-----Y-D---~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL-----Y-D---TLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc-----h-H---HHHHHHHHHHhhhccCCcccchhh
Confidence 579999999999988877654 4789999999999999987510 1 2 467788888997666789999983
Q ss_pred -cCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 241 -DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 241 -D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
|...-.+. -..+|-.+...|+|||.|++.+++
T Consensus 195 aDVl~YlG~-----Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 195 ADVLPYLGA-----LEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred hhHHHhhcc-----hhhHHHHHHHhcCCCceEEEEecc
Confidence 22111222 124788999999999999987654
No 172
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.47 E-value=1.5e-06 Score=83.09 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=83.1
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEc----chhhHHhhCCC
Q 016578 157 SIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG----DAVEFLRQVPR 232 (387)
Q Consensus 157 ~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~g----D~~~~l~~~~~ 232 (387)
.|..+..+||+|||+|.++..+++..+...|++||.++..+.+|.++...+.. ..++.+++- |...-.+ ...
T Consensus 145 ~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l---~g~i~v~~~~me~d~~~~~~-l~~ 220 (328)
T KOG2904|consen 145 EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL---SGRIEVIHNIMESDASDEHP-LLE 220 (328)
T ss_pred hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh---cCceEEEecccccccccccc-ccc
Confidence 35566689999999999999999987788999999999999999999765532 347888854 3332211 235
Q ss_pred CCeeEEEEcCCCCCC-------Ccccc---------------chHHHHHHHHHhccCCCeEEecc
Q 016578 233 GKYDAIIVDSSDPVG-------PAQEL---------------VEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 233 ~~fDvII~D~~dp~~-------~~~~L---------------~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+++|+|+++.+.-.. +.-.+ +-..++..+.++|+|||.+.+..
T Consensus 221 ~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 221 GKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred CceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 789999988653110 00001 12347888999999999988754
No 173
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.46 E-value=7.5e-07 Score=80.53 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=66.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHH--hhCCCCCee
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL--RQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l--~~~~~~~fD 236 (387)
.++++||+||||+|..+..+++..+..+|++.|.++ +++.++.+...+.. ....++++...|--+.+ .....++||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence 467899999999999999999985568999999999 99999998765421 22467788776632212 111245899
Q ss_pred EEEE-cCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 237 AIIV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 237 vII~-D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+||. |... .. -....+++.+.+.|+++|.+++
T Consensus 122 ~IlasDv~Y---~~--~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 122 VILASDVLY---DE--ELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp EEEEES--S----G--GGHHHHHHHHHHHBTT-TTEEE
T ss_pred EEEEecccc---hH--HHHHHHHHHHHHHhCCCCEEEE
Confidence 9993 4322 21 1245689999999999998554
No 174
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.44 E-value=6.3e-07 Score=84.15 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHh-hccccc--C-----CCCCCCEEEEEcchhhHHhhC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKK-YFPELA--V-----GFEDPRVRLHIGDAVEFLRQV 230 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~-~~~~~~--~-----~~~d~rv~v~~gD~~~~l~~~ 230 (387)
+.+.+||+.|||.|.-+..+++++ -+|++||+++..++.+.+ +..... . ...+.+|+++++|.+++-...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 456699999999999999999985 599999999999999843 221111 0 124568999999998864322
Q ss_pred CCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCe
Q 016578 231 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 270 (387)
Q Consensus 231 ~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGv 270 (387)
.++||+|+=-.+...-++. ...++.+.+.++|+|||.
T Consensus 114 -~g~fD~iyDr~~l~Alpp~--~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 114 -VGKFDLIYDRTFLCALPPE--MRERYAQQLASLLKPGGR 150 (218)
T ss_dssp -HHSEEEEEECSSTTTS-GG--GHHHHHHHHHHCEEEEEE
T ss_pred -cCCceEEEEecccccCCHH--HHHHHHHHHHHHhCCCCc
Confidence 3579998843333222222 356799999999999998
No 175
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.44 E-value=2e-06 Score=83.32 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=63.8
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
..++..+.. .+..+|||||||+|.++..++++. .+|+++|+|+.+++.+++.+. +++++++.+|+.++
T Consensus 32 ~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~ 99 (272)
T PRK00274 32 DKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKV 99 (272)
T ss_pred HHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcC
Confidence 444444432 456799999999999999999985 389999999999999998763 26899999998875
Q ss_pred HhhCCCCCeeEEEEcCCC
Q 016578 227 LRQVPRGKYDAIIVDSSD 244 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~d 244 (387)
- .++-.+|.||.+.+.
T Consensus 100 ~--~~~~~~~~vv~NlPY 115 (272)
T PRK00274 100 D--LSELQPLKVVANLPY 115 (272)
T ss_pred C--HHHcCcceEEEeCCc
Confidence 2 111115888887653
No 176
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2e-06 Score=82.48 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=72.3
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCC--CeeEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG--KYDAI 238 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~--~fDvI 238 (387)
...||+||+|.|.++..+++.. .+|++||||+.+++..++.+.. ..+++++.+|+.++ +. .+ .++.|
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~--d~-~~l~~~~~v 99 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKF--DF-PSLAQPYKV 99 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcC--cc-hhhcCCCEE
Confidence 6799999999999999999985 6899999999999999998752 36999999999876 22 22 68899
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccC-CCeEEec
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRP-GGVLCNM 274 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~Lkp-gGvlv~q 274 (387)
+.+.+..+.. +=.++.+.....+ ..++++|
T Consensus 100 VaNlPY~Iss------pii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 100 VANLPYNISS------PILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred EEcCCCcccH------HHHHHHHhccCccceEEEEeH
Confidence 9888765543 2233333333333 4455554
No 177
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.41 E-value=9.6e-07 Score=91.25 Aligned_cols=111 Identities=21% Similarity=0.274 Sum_probs=75.9
Q ss_pred CCEEEEEcCcccHHHHHHHhc----CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 161 PKTVLVVGGGDGGVLREISRH----DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~----~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
.+.|||||+|+|.+...+++. ....+|.+||-++..+...++..... ++ +.+|+++.+|.+++- . +++.|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w-~~~V~vi~~d~r~v~--l-pekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GW-GDKVTVIHGDMREVE--L-PEKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TT-TTTEEEEES-TTTSC--H-SS-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CC-CCeEEEEeCcccCCC--C-CCcee
Confidence 467999999999998777654 34579999999998887776653322 33 348999999998863 2 45999
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
+||+..-...+.. + ...|.+....+.|+|||+++=+....+
T Consensus 261 IIVSElLGsfg~n-E-l~pE~Lda~~rfLkp~Gi~IP~~~t~y 301 (448)
T PF05185_consen 261 IIVSELLGSFGDN-E-LSPECLDAADRFLKPDGIMIPSSYTSY 301 (448)
T ss_dssp EEEE---BTTBTT-T-SHHHHHHHGGGGEEEEEEEESSEEEEE
T ss_pred EEEEeccCCcccc-c-cCHHHHHHHHhhcCCCCEEeCcchhhE
Confidence 9997765433322 2 345788888999999999985544333
No 178
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.40 E-value=4.7e-06 Score=82.57 Aligned_cols=119 Identities=20% Similarity=0.237 Sum_probs=88.6
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEc-chhh
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG-DAVE 225 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~g-D~~~ 225 (387)
...|+.+.. ....+.|||==||||+++.|+.-.+ .+++++|||..+++-++.|+..... +...++.. |+..
T Consensus 186 AR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~y~i----~~~~~~~~~Da~~ 257 (347)
T COG1041 186 ARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLEYYGI----EDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHhc--cccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhhhCc----CceeEEEeccccc
Confidence 444444433 3456699999999999999988775 6999999999999999999987631 34555555 8765
Q ss_pred HHhhCCCCCeeEEEEcCCCCCCCc------cccchHHHHHHHHHhccCCCeEEeccc
Q 016578 226 FLRQVPRGKYDAIIVDSSDPVGPA------QELVEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 226 ~l~~~~~~~fDvII~D~~dp~~~~------~~L~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
. + .+++++|.|++|++...... ..|+ .++++.+.+.|++||.+++.+.
T Consensus 258 l-p-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly-~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 L-P-LRDNSVDAIATDPPYGRSTKIKGEGLDELY-EEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred C-C-CCCCccceEEecCCCCcccccccccHHHHH-HHHHHHHHHHhhcCcEEEEecC
Confidence 3 2 44457999999987654321 2333 4699999999999999997553
No 179
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=2.6e-05 Score=77.65 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=115.6
Q ss_pred ceeEEEEc-CeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhc
Q 016578 126 YGKVLVLD-GIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYF 204 (387)
Q Consensus 126 ~G~~L~lD-G~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~ 204 (387)
.|-.+.+| -.+.++.+....-..+.... .....|||.-+|-|.++..++++.... |+++||+|..++..++++
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v-----~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTERARVAELV-----KEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENI 231 (341)
T ss_pred CCEEEEEchHHeEECCCchHHHHHHHhhh-----cCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHH
Confidence 44445555 33455554432222333222 458899999999999999999997544 999999999999999998
Q ss_pred ccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhh--
Q 016578 205 PELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHT-- 282 (387)
Q Consensus 205 ~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~-- 282 (387)
..+.. ..+++.+.||++++..+. +.+|-||+..+. .+.+|+....+.++++|++-.....+-...
T Consensus 232 ~LN~v---~~~v~~i~gD~rev~~~~--~~aDrIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~ 298 (341)
T COG2520 232 RLNKV---EGRVEPILGDAREVAPEL--GVADRIIMGLPK--------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE 298 (341)
T ss_pred HhcCc---cceeeEEeccHHHhhhcc--ccCCEEEeCCCC--------cchhhHHHHHHHhhcCcEEEEEeccchhhccc
Confidence 76532 346999999999987653 579999987754 134689999999999999875432221111
Q ss_pred hHHHHHHHHHHHHcCCCcceEEEEeeccCCCcEEEEE
Q 016578 283 HLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLI 319 (387)
Q Consensus 283 ~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ 319 (387)
...+.+.....+.-.......+.-|-+|..+.|-+.+
T Consensus 299 ~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~hv~v 335 (341)
T COG2520 299 RPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVV 335 (341)
T ss_pred chHHHHHHHHhhccCcceEEEEEEecccCCCeeEEEE
Confidence 1233333333333111223445567788777775554
No 180
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1e-06 Score=81.20 Aligned_cols=117 Identities=20% Similarity=0.214 Sum_probs=85.5
Q ss_pred HHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhccccc------CCCCCCCE
Q 016578 145 AYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELA------VGFEDPRV 216 (387)
Q Consensus 145 ~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~------~~~~d~rv 216 (387)
.|.+.+..+--. ..+..+.|++|+|+|.++..+++.- +...+++||.-+++++.+++++...- ..++..++
T Consensus 68 mha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 68 MHATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 455555444311 1345699999999999998888652 22344999999999999999876543 23667899
Q ss_pred EEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 217 RLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 217 ~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
.++++|++.--.+ ..+||.|.+.+..+. .-+.+...|++||.+++-
T Consensus 147 ~ivvGDgr~g~~e--~a~YDaIhvGAaa~~----------~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 147 SIVVGDGRKGYAE--QAPYDAIHVGAAASE----------LPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEEeCCccccCCc--cCCcceEEEccCccc----------cHHHHHHhhccCCeEEEe
Confidence 9999999976443 468999999865433 345677889999988863
No 181
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.38 E-value=8.9e-07 Score=79.36 Aligned_cols=80 Identities=24% Similarity=0.346 Sum_probs=58.0
Q ss_pred CEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCC-eeEEEE
Q 016578 162 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGK-YDAIIV 240 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~-fDvII~ 240 (387)
+.|+|+.||.|+.+..+++.. .+|++||+|+.-++.|+.+..-... ..|++++.+|.++.++...... ||+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv---~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGV---ADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 368999999999999999985 6899999999999999999765522 4589999999999887653223 899998
Q ss_pred cCCCCCCC
Q 016578 241 DSSDPVGP 248 (387)
Q Consensus 241 D~~dp~~~ 248 (387)
++ ||+-
T Consensus 76 SP--PWGG 81 (163)
T PF09445_consen 76 SP--PWGG 81 (163)
T ss_dssp -----BSS
T ss_pred CC--CCCC
Confidence 66 4543
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.34 E-value=4.3e-06 Score=79.95 Aligned_cols=84 Identities=17% Similarity=0.277 Sum_probs=64.7
Q ss_pred HHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh
Q 016578 146 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 225 (387)
Q Consensus 146 Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~ 225 (387)
-.+++..+.. .+..+|||||||+|.+++.+++.. .+|+++|+|+.+++.+++.+.. .++++++.+|+.+
T Consensus 18 ~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~ 86 (253)
T TIGR00755 18 IQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhc
Confidence 3455555432 456799999999999999999986 4699999999999999988742 4689999999876
Q ss_pred HHhhCCCCCee---EEEEcCCC
Q 016578 226 FLRQVPRGKYD---AIIVDSSD 244 (387)
Q Consensus 226 ~l~~~~~~~fD---vII~D~~d 244 (387)
+.. ..|| +|+.+.+.
T Consensus 87 ~~~----~~~d~~~~vvsNlPy 104 (253)
T TIGR00755 87 VDL----PDFPKQLKVVSNLPY 104 (253)
T ss_pred CCh----hHcCCcceEEEcCCh
Confidence 522 2466 88877653
No 183
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.33 E-value=1.3e-05 Score=83.32 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
..+.+|||+++|.|+=+..++... +...|+++|+++.-++..++++..+ + -.++.+...|+..+.... .+.||.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~--G--~~nv~v~~~D~~~~~~~~-~~~fD~ 186 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC--G--VSNVALTHFDGRVFGAAL-PETFDA 186 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc--C--CCeEEEEeCchhhhhhhc-hhhcCe
Confidence 455799999999999999998763 3358999999999999999998876 2 246899999998764433 457999
Q ss_pred EEEcCCCC-CCC----ccc-------------cchHHHHHHHHHhccCCCeEEecccc
Q 016578 238 IIVDSSDP-VGP----AQE-------------LVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 238 II~D~~dp-~~~----~~~-------------L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
|++|++-. .+. ++. -.+.+++..+.+.|+|||+|+-.+++
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 99998642 121 110 12467899999999999999865554
No 184
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.31 E-value=2.2e-06 Score=77.95 Aligned_cols=111 Identities=21% Similarity=0.253 Sum_probs=76.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCce---------EEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVEL---------IDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ 229 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~---------Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~ 229 (387)
.+...|||--||+|+++.|.+....... +.++|+|+.+++.|++++... ++ ...+.+...|+.++-
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a--g~-~~~i~~~~~D~~~l~-- 101 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA--GV-EDYIDFIQWDARELP-- 101 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT--T--CGGEEEEE--GGGGG--
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc--cc-CCceEEEecchhhcc--
Confidence 4556899999999999999876533333 899999999999999998765 23 346899999998864
Q ss_pred CCCCCeeEEEEcCCCCCCCcc----ccchHHHHHHHHHhccCCCeEEec
Q 016578 230 VPRGKYDAIIVDSSDPVGPAQ----ELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 230 ~~~~~fDvII~D~~dp~~~~~----~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
..++.+|+||+|++....... .-+...|++.+++.|++..++++.
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 235689999999976543211 122345888889999995555543
No 185
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.27 E-value=9.1e-06 Score=79.27 Aligned_cols=115 Identities=20% Similarity=0.263 Sum_probs=78.1
Q ss_pred hhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHH---HHhhcccccCCCCCCCEEEE
Q 016578 143 ECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDV---SKKYFPELAVGFEDPRVRLH 219 (387)
Q Consensus 143 e~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~---ar~~~~~~~~~~~d~rv~v~ 219 (387)
.+-++...-|++-+ ..++|||||||+|..+..+++.+ .+.|+++|-++...-. +++++. .+.++. .
T Consensus 101 d~KW~rl~p~l~~L---~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg------~~~~~~-~ 169 (315)
T PF08003_consen 101 DWKWDRLLPHLPDL---KGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLG------QDPPVF-E 169 (315)
T ss_pred cchHHHHHhhhCCc---CCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhC------CCccEE-E
Confidence 35577888887422 57899999999999999999885 5789999988776443 333332 122333 2
Q ss_pred EcchhhHHhhCCCCCeeEEEEcCC-CCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 220 IGDAVEFLRQVPRGKYDAIIVDSS-DPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 220 ~gD~~~~l~~~~~~~fDvII~D~~-dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
...+.+.+.. .+.||+|++-.- .+... -.+.++.+++.|++||.+++.+
T Consensus 170 lplgvE~Lp~--~~~FDtVF~MGVLYHrr~-----Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 170 LPLGVEDLPN--LGAFDTVFSMGVLYHRRS-----PLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred cCcchhhccc--cCCcCEEEEeeehhccCC-----HHHHHHHHHHhhCCCCEEEEEE
Confidence 2345565654 468999996432 11111 1357899999999999999653
No 186
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.26 E-value=7.4e-06 Score=78.20 Aligned_cols=93 Identities=22% Similarity=0.207 Sum_probs=66.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
+..++||||+|+|.++..++.+. ++|++.|+++.|....++. ..+++-. .++- +. +.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl~~--~~w~-~~-~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVLDI--DDWQ-QT-DFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEEeh--hhhh-cc-CCceEEEe
Confidence 45689999999999999998875 6899999999997766553 2334433 3332 22 46899998
Q ss_pred E-cCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 240 V-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 240 ~-D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+ +.-|....+ ...++.++++|+|+|++++-
T Consensus 157 cLNvLDRc~~P-----~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 157 CLNVLDRCDRP-----LTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ehhhhhccCCH-----HHHHHHHHHHhCCCCEEEEE
Confidence 5 333322221 24799999999999998753
No 187
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.24 E-value=3.2e-06 Score=84.18 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=75.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCC------CCCCEEEEEcchhhH-Hhh-CC
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGF------EDPRVRLHIGDAVEF-LRQ-VP 231 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~------~d~rv~v~~gD~~~~-l~~-~~ 231 (387)
+..+|||||||-|+-+.-..+. .+..++++||+.+.|+.|++.+..+.... .+-...++.+|.+.- +.. ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 5679999999988877776665 47899999999999999999873322110 012457788887632 211 12
Q ss_pred C--CCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 232 R--GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 232 ~--~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+ .+||+|-+-..-+......--.+.+++.+.+.|+|||+|+.-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2 489999987655443332223456999999999999999953
No 188
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.24 E-value=5e-06 Score=77.35 Aligned_cols=122 Identities=21% Similarity=0.210 Sum_probs=81.0
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 240 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~ 240 (387)
+.-|||||||+|..+..+.... -..++|||++.|++.|.+ .++. -.++.+|.-+-+.- .+++||.+|+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~--~e~e-------gdlil~DMG~Glpf-rpGtFDg~IS 118 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE--RELE-------GDLILCDMGEGLPF-RPGTFDGVIS 118 (270)
T ss_pred CcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH--hhhh-------cCeeeeecCCCCCC-CCCccceEEE
Confidence 6689999999998888776653 578999999999999987 3331 24666776555533 4689998885
Q ss_pred cCCCCC---------CCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHH-HHHHHHHcCC
Q 016578 241 DSSDPV---------GPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM-ISICRETFKG 298 (387)
Q Consensus 241 D~~dp~---------~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~-~~~l~~~F~~ 298 (387)
-+.-.| .|...| ..||..++.+|++|+..++|...- +...+..+ .+.++.-|.+
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl--~~FF~tLy~~l~rg~raV~QfYpe--n~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRL--LRFFGTLYSCLKRGARAVLQFYPE--NEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred eeeeeeecccCccccChHHHH--HHHhhhhhhhhccCceeEEEeccc--chHHHHHHHHHHHhhccCC
Confidence 432211 111222 348999999999999999986321 11222333 3455566754
No 189
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.18 E-value=1.3e-05 Score=74.34 Aligned_cols=124 Identities=21% Similarity=0.201 Sum_probs=91.4
Q ss_pred CeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCC
Q 016578 134 GIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED 213 (387)
Q Consensus 134 G~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d 213 (387)
|+++.-|. .|.+.++.... .+..+||.+|.|-|.+.-.+-+.++. +-+.||..|+|++..|+.-+. +-
T Consensus 81 ~VMm~WEt---piMha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~-----ek 148 (271)
T KOG1709|consen 81 GVMMRWET---PIMHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR-----EK 148 (271)
T ss_pred hhhhhhhh---HHHHHHHHHHh---hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc-----cc
Confidence 45544333 35444443322 57889999999999999998888765 566799999999999987543 24
Q ss_pred CCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 214 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 214 ~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
.+|.++.+--.+.+...+++.||-|+.|.+.+... -..+|++.+.+.|||+|++..
T Consensus 149 ~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yE----dl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 149 ENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYE----DLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cceEEEecchHhhhccccccCcceeEeechhhHHH----HHHHHHHHHhhhcCCCceEEE
Confidence 57777777666666666677899999998754322 146799999999999999984
No 190
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=3.3e-05 Score=69.97 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=87.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
+++-+|+||||+|.+...+++. .+.....++||+|...+..++-...+ .-++.++..|...-++. ++.|++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-----~~~~~~V~tdl~~~l~~---~~VDvL 114 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-----RVHIDVVRTDLLSGLRN---ESVDVL 114 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-----CCccceeehhHHhhhcc---CCccEE
Confidence 4778999999999999998875 34557789999999999988765433 45688999998887753 689999
Q ss_pred EEcCCCCCCCccc-----------------cchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHH
Q 016578 239 IVDSSDPVGPAQE-----------------LVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 294 (387)
Q Consensus 239 I~D~~dp~~~~~~-----------------L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~ 294 (387)
+.+.+.-..+... -.+..++.++-..|.|.|++.+.+ ......+++.+.+++
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~----~~~N~p~ei~k~l~~ 183 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA----LRANKPKEILKILEK 183 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee----hhhcCHHHHHHHHhh
Confidence 9886541111111 113457788889999999987643 223344556665553
No 191
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.10 E-value=1.4e-05 Score=84.37 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=87.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCC--------CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHh---
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDS--------VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLR--- 228 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~--------~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~--- 228 (387)
...+|||.+||+|+++..++++.. ...++++|||+..+..++..+.... ...+++..+|......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence 456999999999999999876531 2578999999999999999876542 2245666666543211
Q ss_pred hCCCCCeeEEEEcCCCCCCC-cc------------------------------------------ccchHHHHHHHHHhc
Q 016578 229 QVPRGKYDAIIVDSSDPVGP-AQ------------------------------------------ELVEKPFFDTIAKAL 265 (387)
Q Consensus 229 ~~~~~~fDvII~D~~dp~~~-~~------------------------------------------~L~~~ef~~~l~~~L 265 (387)
....++||+||.+++..... .. .+|..=|++.+.+.|
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL 186 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIA 186 (524)
T ss_pred ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhc
Confidence 11135799999887653211 00 011111346788999
Q ss_pred cCCCeEEecccccchhhhHHHHHHHHHHHH
Q 016578 266 RPGGVLCNMAESMWLHTHLIEDMISICRET 295 (387)
Q Consensus 266 kpgGvlv~q~~s~~~~~~~~~~~~~~l~~~ 295 (387)
++||.+.+...+.|+.....+.+.+.+-+.
T Consensus 187 ~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 187 NKNGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred CCCCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 999999876666676655555555555443
No 192
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.10 E-value=1.9e-05 Score=77.40 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=68.3
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCC-CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 225 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~-~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~ 225 (387)
.|++..+.. .+...+||++||.|+.+..+++..+ ..+|+++|+|+++++.+++.+.. ..+++++++|..+
T Consensus 9 ~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~ 79 (296)
T PRK00050 9 DEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHH
Confidence 455555532 2345999999999999999998853 57999999999999999998743 2489999999998
Q ss_pred HHhhCCC--CCeeEEEEcC
Q 016578 226 FLRQVPR--GKYDAIIVDS 242 (387)
Q Consensus 226 ~l~~~~~--~~fDvII~D~ 242 (387)
+....++ ..+|.|+.|+
T Consensus 80 l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHHHcCCCccCEEEECC
Confidence 7654322 2799999884
No 193
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.08 E-value=8.8e-06 Score=79.79 Aligned_cols=136 Identities=21% Similarity=0.212 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-------CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-------DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP 231 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-------~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~ 231 (387)
.+..+|||-.||+|+++.++.++ ....++.++|+|+..+.+|+-++... +.+.....+..+|.+.-.....
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~--~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH--GIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT--THHCBGCEEEES-TTTSHSCTS
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh--cccccccccccccccccccccc
Confidence 34558999999999999988763 24579999999999999999875332 2223345688999764322111
Q ss_pred CCCeeEEEEcCCCCCC--Cccc---------------cchHHHHHHHHHhccCCCeEEecccccch-hhhHHHHHHHHHH
Q 016578 232 RGKYDAIIVDSSDPVG--PAQE---------------LVEKPFFDTIAKALRPGGVLCNMAESMWL-HTHLIEDMISICR 293 (387)
Q Consensus 232 ~~~fDvII~D~~dp~~--~~~~---------------L~~~ef~~~l~~~LkpgGvlv~q~~s~~~-~~~~~~~~~~~l~ 293 (387)
.++||+||.+++.... .... -..-.|++.+.+.|+++|.+++...+.++ .......+.+.+-
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll 202 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLL 202 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHH
Confidence 3589999998765332 1000 01124889999999999987655444333 2223345555554
Q ss_pred HHc
Q 016578 294 ETF 296 (387)
Q Consensus 294 ~~F 296 (387)
+.+
T Consensus 203 ~~~ 205 (311)
T PF02384_consen 203 ENG 205 (311)
T ss_dssp HHE
T ss_pred hhc
Confidence 443
No 194
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.07 E-value=2e-06 Score=70.81 Aligned_cols=100 Identities=20% Similarity=0.246 Sum_probs=46.0
Q ss_pred EEEcCcccHHHHHHHhcCCC---ceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEc
Q 016578 165 LVVGGGDGGVLREISRHDSV---ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVD 241 (387)
Q Consensus 165 L~IG~G~G~~~~el~k~~~~---~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D 241 (387)
|+||+..|..+..+++.... .++++||..+. .+..++.+... ++ ..+++++.+|..+++.....++||+|++|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~--~~-~~~~~~~~g~s~~~l~~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA--GL-SDRVEFIQGDSPDFLPSLPDGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS-------------G--GG--BTEEEEES-THHHHHHHHH--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc--CC-CCeEEEEEcCcHHHHHHcCCCCEEEEEEC
Confidence 68999999999888765222 37999999995 22222222221 11 34899999999988876544689999999
Q ss_pred CCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 242 SSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 242 ~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
...... .....++.+...|+|||++++
T Consensus 77 g~H~~~-----~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 77 GDHSYE-----AVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp S---HH-----HHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCHH-----HHHHHHHHHHHHcCCCeEEEE
Confidence 853211 234578899999999999986
No 195
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.06 E-value=3.5e-05 Score=69.62 Aligned_cols=152 Identities=18% Similarity=0.296 Sum_probs=85.3
Q ss_pred HHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchh
Q 016578 146 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV 224 (387)
Q Consensus 146 Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~ 224 (387)
-.|++....++...++.+|||||++.|+.+..++++. ...+|++||+.+. .- .+.+..+.+|..
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~---------~~~~~~i~~d~~ 73 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP---------LQNVSFIQGDIT 73 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS----------TTEEBTTGGGE
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc---------ccceeeeecccc
Confidence 4677777765433356899999999999999999885 4679999999877 10 123333344432
Q ss_pred -----hHHhhC---CCCCeeEEEEcCCCCCCCc---ccc----chHHHHHHHHHhccCCCeEEecccccchhhhHHHHHH
Q 016578 225 -----EFLRQV---PRGKYDAIIVDSSDPVGPA---QEL----VEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMI 289 (387)
Q Consensus 225 -----~~l~~~---~~~~fDvII~D~~dp~~~~---~~L----~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~ 289 (387)
+.+.+. ..+++|+|++|........ ++. .....+..+.+.|+|||.+++-. +..... ..++
T Consensus 74 ~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~---~~~~~~-~~~~ 149 (181)
T PF01728_consen 74 NPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV---FKGPEI-EELI 149 (181)
T ss_dssp EEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE---SSSTTS-HHHH
T ss_pred hhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe---ccCccH-HHHH
Confidence 222222 1258999999984332211 110 11233456667899999888643 112222 3677
Q ss_pred HHHHHHcCCCcceEEEEeecc--CCCcEEEEEE
Q 016578 290 SICRETFKGSVHYAWASVPTY--PSGIIGFLIC 320 (387)
Q Consensus 290 ~~l~~~F~~~v~~~~~~iPty--p~g~~gf~~a 320 (387)
..++..|. .+.. .-|.. +.+.--|++|
T Consensus 150 ~~l~~~F~-~v~~---~Kp~~sr~~s~E~Ylv~ 178 (181)
T PF01728_consen 150 YLLKRCFS-KVKI---VKPPSSRSESSEEYLVC 178 (181)
T ss_dssp HHHHHHHH-HEEE---EE-TTSBTTCBEEEEES
T ss_pred HHHHhCCe-EEEE---EECcCCCCCccEEEEEE
Confidence 77777886 4432 23332 2234456655
No 196
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.05 E-value=5e-05 Score=71.84 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=43.5
Q ss_pred cchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHH
Q 016578 141 KDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDV 199 (387)
Q Consensus 141 ~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ 199 (387)
+..+...+++.+... ..+.++|||||||+|+++..+++++ ..+|++||+++.++..
T Consensus 58 r~~~kL~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 58 RGGEKLKEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred hhHHHHHHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHH
Confidence 444455677777653 2356789999999999999999984 6899999999976654
No 197
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.04 E-value=1.9e-05 Score=77.15 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCC--CCCEEEEEcchhhH-Hhh---CCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFE--DPRVRLHIGDAVEF-LRQ---VPR 232 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~--d~rv~v~~gD~~~~-l~~---~~~ 232 (387)
+....||++|||-|+-++-..+. .+..++++||...-|+-|++....+..-++ .-.+.++.+|.+.- +.+ ..+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 45668999999999998887776 478999999999999999998776643111 11468889997643 211 123
Q ss_pred CCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 233 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 233 ~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.+||+|-+-...+......--..-+++.+.++|+|||+|+-..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 3599988765544332211113457899999999999999543
No 198
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=9.8e-05 Score=76.09 Aligned_cols=114 Identities=20% Similarity=0.274 Sum_probs=85.7
Q ss_pred HHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchh
Q 016578 145 AYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV 224 (387)
Q Consensus 145 ~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~ 224 (387)
.|...+.++.. ...++|||+=||.|.++..+++. +.+|++||++++.++.|+++...+.. .|++++.+|+.
T Consensus 281 l~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i----~N~~f~~~~ae 351 (432)
T COG2265 281 LYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGI----DNVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHHhh---cCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCC----CcEEEEeCCHH
Confidence 34555555432 34568999999999999999975 58999999999999999999876632 35999999999
Q ss_pred hHHhhCC-CCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 225 EFLRQVP-RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 225 ~~l~~~~-~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
++..... ...+|+||+|++-.-. .+++++.+. .++|..++-+.
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR~G~------~~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPRAGA------DREVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred HHhhhccccCCCCEEEECCCCCCC------CHHHHHHHH-hcCCCcEEEEe
Confidence 9987652 3479999999864221 234666555 46788877663
No 199
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.02 E-value=9.7e-06 Score=75.86 Aligned_cols=99 Identities=24% Similarity=0.271 Sum_probs=77.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCC--EEEEEcchhhHHhhCCCCCeeE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPR--VRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~r--v~v~~gD~~~~l~~~~~~~fDv 237 (387)
.-..+++||||-|.+.+.+.+.. +++++++|.+..|++.++.-- ||. +...++| .+++. ..++++|+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q--------dp~i~~~~~v~D-EE~Ld-f~ens~DL 140 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ--------DPSIETSYFVGD-EEFLD-FKENSVDL 140 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC--------CCceEEEEEecc-hhccc-ccccchhh
Confidence 34579999999999999998885 999999999999999998742 344 4556677 45554 45789999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
||...+.+|.. + -+..+.+|+.+|||+|.|+.
T Consensus 141 iisSlslHW~N--d--LPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 141 IISSLSLHWTN--D--LPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhhhhhc--c--CchHHHHHHHhcCCCccchh
Confidence 99888776643 1 12368899999999999984
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.00 E-value=7e-05 Score=68.60 Aligned_cols=112 Identities=23% Similarity=0.305 Sum_probs=79.2
Q ss_pred HHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHH
Q 016578 148 EMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL 227 (387)
Q Consensus 148 eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l 227 (387)
+.+..++.+... ..+++|||+|.|-=+.-++=..|..+++.||-...=+...+.-...+ ++ ++++++.+.+.+
T Consensus 37 DSL~~~~~~~~~-~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L--~L--~nv~v~~~R~E~-- 109 (184)
T PF02527_consen 37 DSLALLPFLPDF-GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL--GL--SNVEVINGRAEE-- 109 (184)
T ss_dssp HHHGGGGCS-CC-CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH--T---SSEEEEES-HHH--
T ss_pred HHHHhhhhhccC-CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh--CC--CCEEEEEeeecc--
Confidence 444444443222 22899999999977777665556789999999998888777766555 22 479999999887
Q ss_pred hhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 228 RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 228 ~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.. ...+||+|++-+..+. ..+++.+...|++||.++..-
T Consensus 110 ~~-~~~~fd~v~aRAv~~l--------~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 110 PE-YRESFDVVTARAVAPL--------DKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp TT-TTT-EEEEEEESSSSH--------HHHHHHHGGGEEEEEEEEEEE
T ss_pred cc-cCCCccEEEeehhcCH--------HHHHHHHHHhcCCCCEEEEEc
Confidence 22 2568999998765432 248889999999999998643
No 201
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.99 E-value=2.4e-05 Score=74.87 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..+..||+||.|+|.++..++... ++|++||+||.++....+.+.... ...+++++.+|..+. +.-.||++
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD~lK~----d~P~fd~c 127 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGDFLKT----DLPRFDGC 127 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEecccccC----CCccccee
Confidence 567799999999999999999875 799999999999999998876441 146999999996542 22479999
Q ss_pred EEcCCCCC
Q 016578 239 IVDSSDPV 246 (387)
Q Consensus 239 I~D~~dp~ 246 (387)
|.+.+..+
T Consensus 128 VsNlPyqI 135 (315)
T KOG0820|consen 128 VSNLPYQI 135 (315)
T ss_pred eccCCccc
Confidence 98876544
No 202
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.98 E-value=2.6e-05 Score=69.44 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=57.4
Q ss_pred EEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccC
Q 016578 188 DICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRP 267 (387)
Q Consensus 188 t~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~Lkp 267 (387)
+++|++++|++.|++..+....+ ..++++++.+|+.+.. .++++||+|++...-...+ -..++++.++++|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~lp--~~~~~fD~v~~~~~l~~~~----d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDLP--FDDCEFDAVTMGYGLRNVV----DRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhCC--CCCCCeeEEEecchhhcCC----CHHHHHHHHHHHcCc
Confidence 47999999999998775432111 1247999999988752 3456899999764332222 135689999999999
Q ss_pred CCeEEec
Q 016578 268 GGVLCNM 274 (387)
Q Consensus 268 gGvlv~q 274 (387)
||.+++.
T Consensus 74 GG~l~i~ 80 (160)
T PLN02232 74 GSRVSIL 80 (160)
T ss_pred CeEEEEE
Confidence 9999864
No 203
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.96 E-value=1.7e-05 Score=72.11 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=84.6
Q ss_pred hHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcch
Q 016578 144 CAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA 223 (387)
Q Consensus 144 ~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~ 223 (387)
+.+.+|++... ...+.|+|.|+|.++...++. .++|.++|.||...+.|++++.-. .+.+++++.+|+
T Consensus 22 avF~~ai~~va------~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~----g~~n~evv~gDA 89 (252)
T COG4076 22 AVFTSAIAEVA------EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVP----GDVNWEVVVGDA 89 (252)
T ss_pred HHHHHHHHHHh------hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCC----CCcceEEEeccc
Confidence 45667776653 257999999999988877776 589999999999999999997432 256899999999
Q ss_pred hhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 224 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 224 ~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+.| +. +.-|+||+..-|..-..+. +...++.+.+-|+.++.++-|
T Consensus 90 ~~y--~f--e~ADvvicEmlDTaLi~E~--qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 90 RDY--DF--ENADVVICEMLDTALIEEK--QVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred ccc--cc--cccceeHHHHhhHHhhccc--ccHHHHHHHHHhhcCCccccH
Confidence 987 33 4689999876553211111 234677788888999988854
No 204
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.94 E-value=5.2e-05 Score=82.74 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=77.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcC------------------------------------------CCceEEEEeCCHHHH
Q 016578 160 SPKTVLVVGGGDGGVLREISRHD------------------------------------------SVELIDICEIDKMVI 197 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~------------------------------------------~~~~Vt~VEiD~~vi 197 (387)
....++|-+||+|.++.|.+... ...+|+++|+|+.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 35689999999999999986520 112699999999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhcc---CCCeEEec
Q 016578 198 DVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALR---PGGVLCNM 274 (387)
Q Consensus 198 ~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~Lk---pgGvlv~q 274 (387)
+.|++++... ++. .++++..+|+.++......++||+|++|++........--..++|+.+-+.|+ +|+.+++-
T Consensus 270 ~~A~~N~~~~--g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 270 QAARKNARRA--GVA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHc--CCC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 9999998765 333 37999999998764322235799999998763322111112345555555554 77766543
Q ss_pred c
Q 016578 275 A 275 (387)
Q Consensus 275 ~ 275 (387)
+
T Consensus 347 t 347 (702)
T PRK11783 347 S 347 (702)
T ss_pred e
Confidence 3
No 205
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.00033 Score=70.56 Aligned_cols=116 Identities=21% Similarity=0.306 Sum_probs=86.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCC--ceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCC-CCee
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSV--ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR-GKYD 236 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~--~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~-~~fD 236 (387)
...+|||+..+.|+=+..++..... ..|+++|+|+.=++..++++..+.. .++.++..|++.+...... ++||
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~----~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV----RNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC----CceEEEecccccccccccccCcCc
Confidence 3469999999999999888876432 4579999999999999999887732 4588999998876544322 3699
Q ss_pred EEEEcCCCC-CCC----cc-------------ccchHHHHHHHHHhccCCCeEEecccccc
Q 016578 237 AIIVDSSDP-VGP----AQ-------------ELVEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 237 vII~D~~dp-~~~----~~-------------~L~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
.|++|++-. .|. ++ .-++.+++....+.|||||+|+-.++|..
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 999997642 111 11 12357899999999999999997666543
No 206
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.84 E-value=4.6e-05 Score=75.39 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=73.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
+.+.|||+|||+|.+....++.+ ..+|.+||-+..+ +.|++-+..+ ++++ .++++.+.+.+. ..|.++.|+||
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N--~~~~-ii~vi~gkvEdi--~LP~eKVDiIv 132 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDN--GLED-VITVIKGKVEDI--ELPVEKVDIIV 132 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhc--Cccc-eEEEeecceEEE--ecCccceeEEe
Confidence 57899999999999999999996 6899999987655 8888876654 3444 799999988775 34457999999
Q ss_pred EcCCCCCCCccccchHHHHHH----HHHhccCCCeEEe
Q 016578 240 VDSSDPVGPAQELVEKPFFDT----IAKALRPGGVLCN 273 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~----l~~~LkpgGvlv~ 273 (387)
..--. ..|+-...+.. =-+.|+|||++.-
T Consensus 133 SEWMG-----y~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 133 SEWMG-----YFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ehhhh-----HHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 65321 11222222222 2357999999863
No 207
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=3.9e-05 Score=67.21 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=69.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
..+++++||||.|-+....+ .+..+.|.++||||+.++.++++..++. -++++.++|..+.... .+.||..+
T Consensus 48 Egkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdildle~~--~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDILDLELK--GGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeeccchhcc--CCeEeeEE
Confidence 57899999999998885444 4567899999999999999999987762 3557888887664322 46899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcc
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALR 266 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~Lk 266 (387)
+|.+. +....-...+|.+...++.+
T Consensus 120 iNppF--GTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 120 INPPF--GTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred ecCCC--CcccccccHHHHHHHHHHHH
Confidence 98764 32221234456665555444
No 208
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.82 E-value=3.6e-05 Score=72.63 Aligned_cols=107 Identities=21% Similarity=0.290 Sum_probs=74.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCC--ceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH--HhhCCCCCe
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSV--ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--LRQVPRGKY 235 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~--~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~--l~~~~~~~f 235 (387)
.+.+||+||||.|.+..-+++..+. .+|.+||-+|..+++.+++-.. +..++.-.+.|...- ......+.+
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-----~e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-----DESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-----chhhhcccceeccchhccCCCCcCcc
Confidence 4458999999999999999987655 7899999999999999987432 334555555554321 122245789
Q ss_pred eEEEEcCCC-CCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 236 DAIIVDSSD-PVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 236 DvII~D~~d-p~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|.|++-..- .+.|.. -...++.+++.|||||.+++-
T Consensus 146 D~it~IFvLSAi~pek---~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEK---MQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred ceEEEEEEEeccChHH---HHHHHHHHHHHhCCCcEEEEe
Confidence 987743221 222311 234789999999999998863
No 209
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.81 E-value=0.0002 Score=69.44 Aligned_cols=108 Identities=17% Similarity=0.348 Sum_probs=64.7
Q ss_pred CCCEEEEEcCcccHHH-HHHHh-cCCCceEEEEeCCHHHHHHHHhhcc-cccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 160 SPKTVLVVGGGDGGVL-REISR-HDSVELIDICEIDKMVIDVSKKYFP-ELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~-~el~k-~~~~~~Vt~VEiD~~vi~~ar~~~~-~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
.|++|+-||+|.==++ ..+++ |.....|+.+|+|++.++.+++-.. .. ++ ..+++++.+|+.+.-.+. ..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~--~L-~~~m~f~~~d~~~~~~dl--~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL--GL-SKRMSFITADVLDVTYDL--KEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-----HH--SSEEEEES-GGGG-GG------S
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc--cc-cCCeEEEecchhcccccc--ccCC
Confidence 4679999999965444 44444 4455689999999999999998765 22 12 468999999987654332 4799
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|++.+.-.... --..+.++.+.+.++||.++++-.
T Consensus 195 vV~lAalVg~~~---e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 195 VVFLAALVGMDA---EPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEEhhhccccc---chHHHHHHHHHhhCCCCcEEEEec
Confidence 999876432111 125689999999999999998753
No 210
>PRK10742 putative methyltransferase; Provisional
Probab=97.80 E-value=0.0002 Score=68.30 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=68.4
Q ss_pred EEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccC--CCCC---CCEEEEEcchhhHHhhCCCCCeeE
Q 016578 163 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAV--GFED---PRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~--~~~d---~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
+|||+=+|.|..+.+++..+ .+|++||-++.+..+.++.+..... .+.. .|++++.+|..+|++... +.||+
T Consensus 91 ~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~-~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT-PRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC-CCCcE
Confidence 89999999999999999885 4599999999999999998776311 0111 579999999999998753 48999
Q ss_pred EEEcCCCCCCC
Q 016578 238 IIVDSSDPVGP 248 (387)
Q Consensus 238 II~D~~dp~~~ 248 (387)
|++|+..|...
T Consensus 168 VYlDPMfp~~~ 178 (250)
T PRK10742 168 VYLDPMFPHKQ 178 (250)
T ss_pred EEECCCCCCCc
Confidence 99999877643
No 211
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.77 E-value=7.1e-05 Score=72.02 Aligned_cols=113 Identities=20% Similarity=0.260 Sum_probs=77.8
Q ss_pred HHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchh
Q 016578 145 AYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV 224 (387)
Q Consensus 145 ~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~ 224 (387)
..+.++..+.. .+...|||||.|.|.++++++++. .++++||+|+..++..++.+. .+++++++.+|+.
T Consensus 18 ~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l 86 (262)
T PF00398_consen 18 IADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFL 86 (262)
T ss_dssp HHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TT
T ss_pred HHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchh
Confidence 34556665543 366799999999999999999986 899999999999999999876 2679999999998
Q ss_pred hHHhhC-CCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhcc---CCCeEEecc
Q 016578 225 EFLRQV-PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALR---PGGVLCNMA 275 (387)
Q Consensus 225 ~~l~~~-~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~Lk---pgGvlv~q~ 275 (387)
++-... -......|+.+.+. .. +..++..+...-+ ...++++|-
T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy--~i-----s~~il~~ll~~~~~g~~~~~l~vq~ 134 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPY--NI-----SSPILRKLLELYRFGRVRMVLMVQK 134 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEETG--TG-----HHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred ccccHHhhcCCceEEEEEecc--cc-----hHHHHHHHhhcccccccceEEEEeh
Confidence 762211 01355677776643 21 3345555555222 234555653
No 212
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=97.77 E-value=0.00014 Score=62.39 Aligned_cols=93 Identities=24% Similarity=0.404 Sum_probs=61.6
Q ss_pred CCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHH
Q 016578 214 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 293 (387)
Q Consensus 214 ~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~ 293 (387)
-+++++.+|+++.+++. ...+|+|+.|.+.|... ..+++.++|+.++++++|||++++.+.. ..+.+.+.
T Consensus 31 v~L~L~~gDa~~~l~~l-~~~~Da~ylDgFsP~~n-PelWs~e~~~~l~~~~~~~~~l~Tys~a--------~~Vr~~L~ 100 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQL-DARFDAWYLDGFSPAKN-PELWSEELFKKLARLSKPGGTLATYSSA--------GAVRRALQ 100 (124)
T ss_dssp EEEEEEES-HHHHHHHB--T-EEEEEE-SS-TTTS-GGGSSHHHHHHHHHHEEEEEEEEES--B--------HHHHHHHH
T ss_pred EEEEEEEcHHHHHHHhC-cccCCEEEecCCCCcCC-cccCCHHHHHHHHHHhCCCcEEEEeech--------HHHHHHHH
Confidence 45788999999999886 46899999999887654 4599999999999999999999975422 22334444
Q ss_pred HHcCCCcceEEEEeeccCCCcEEEEEEec
Q 016578 294 ETFKGSVHYAWASVPTYPSGIIGFLICST 322 (387)
Q Consensus 294 ~~F~~~v~~~~~~iPtyp~g~~gf~~ask 322 (387)
+. .+.....|-|+ +-...+.|+|
T Consensus 101 ~a-----GF~v~~~~g~g-~Kr~~~~a~~ 123 (124)
T PF05430_consen 101 QA-----GFEVEKVPGFG-RKREMLRAVK 123 (124)
T ss_dssp HC-----TEEEEEEE-ST-TSSEEEEEEC
T ss_pred Hc-----CCEEEEcCCCC-CcchheEEEc
Confidence 33 34445677774 3344555554
No 213
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.75 E-value=6.5e-05 Score=75.50 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=60.7
Q ss_pred HHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchh
Q 016578 145 AYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV 224 (387)
Q Consensus 145 ~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~ 224 (387)
.|...+..+. +.+.+|||+-||.|.++..+++.. .+|++||+++.+++.|+++..... -.+++++.+++.
T Consensus 185 l~~~~~~~l~----~~~~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~~~~~~ 254 (352)
T PF05958_consen 185 LYEQALEWLD----LSKGDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNG----IDNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHCT----T-TTEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--SH
T ss_pred HHHHHHHHhh----cCCCcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcC----CCcceEEEeecc
Confidence 3455555443 234489999999999999999874 799999999999999999987652 247999998876
Q ss_pred hHHhhC--------------CCCCeeEEEEcCCC
Q 016578 225 EFLRQV--------------PRGKYDAIIVDSSD 244 (387)
Q Consensus 225 ~~l~~~--------------~~~~fDvII~D~~d 244 (387)
++.... ....+|+||+|++-
T Consensus 255 ~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 255 DFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp HCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T
T ss_pred chhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC
Confidence 653211 12368999999864
No 214
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.74 E-value=0.00016 Score=78.38 Aligned_cols=112 Identities=24% Similarity=0.319 Sum_probs=78.6
Q ss_pred CEEEEEcCcccHHHHHHHhcC-------C-----CceEEEEeCCH---HHHHHHHhhccc--------------ccCC--
Q 016578 162 KTVLVVGGGDGGVLREISRHD-------S-----VELIDICEIDK---MVIDVSKKYFPE--------------LAVG-- 210 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~-------~-----~~~Vt~VEiD~---~vi~~ar~~~~~--------------~~~~-- 210 (387)
-+|||+|.|+|.......+.. + ..+++.+|.+| +-+..+-+.++. ...+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 489999999999776655321 1 34889999765 222222211221 0011
Q ss_pred ---CCCC--CEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 211 ---FEDP--RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 211 ---~~d~--rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+++. +++++.+|+++.+++. ..++|+|+.|.+.|... ..+++.++|+.++++++|||++++-+
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~-~~~~d~~~lD~FsP~~n-p~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQL-DARADAWFLDGFAPAKN-PDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhc-cccccEEEeCCCCCccC-hhhccHHHHHHHHHHhCCCCEEEEee
Confidence 2233 5568889999999876 35799999999887654 46899999999999999999999754
No 215
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.69 E-value=0.00053 Score=66.61 Aligned_cols=116 Identities=23% Similarity=0.374 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCC--CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH--HhhCCCCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDS--VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--LRQVPRGK 234 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~--~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~--l~~~~~~~ 234 (387)
..|-+||||-||.|.....++...+ ..+|...|.++..++..++...+. ++.+ -+++..+|+++. +... +-+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--gL~~-i~~f~~~dAfd~~~l~~l-~p~ 209 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--GLED-IARFEQGDAFDRDSLAAL-DPA 209 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--CCcc-ceEEEecCCCCHhHhhcc-CCC
Confidence 4677999999999999988876544 379999999999999999987654 3433 569999999875 3322 336
Q ss_pred eeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccch
Q 016578 235 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWL 280 (387)
Q Consensus 235 fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~ 280 (387)
.|++|+..-...-+.+.+. ..-++.+.++|.|||.++. +.-||.
T Consensus 210 P~l~iVsGL~ElF~Dn~lv-~~sl~gl~~al~pgG~lIy-TgQPwH 253 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLV-RRSLAGLARALEPGGYLIY-TGQPWH 253 (311)
T ss_pred CCEEEEecchhhCCcHHHH-HHHHHHHHHHhCCCcEEEE-cCCCCC
Confidence 8888875432222222222 2368889999999999985 344664
No 216
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.68 E-value=0.00047 Score=65.32 Aligned_cols=100 Identities=22% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
..++||.||=.+-......+... .++|+++|||+.+++..++..... .-+++.+..|.++-+.+.-.++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~-----gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGL-PKRITVVDIDERLLDFINRVAEEE-----GLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHH-----T--EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHc-----CCceEEEEecccccCCHHHhcCCCEEE
Confidence 47899999988876655555443 479999999999999999887665 234999999999877654357999999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCe
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGV 270 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGv 270 (387)
+|++... +. -.-|+....+.|+..|.
T Consensus 118 TDPPyT~---~G--~~LFlsRgi~~Lk~~g~ 143 (243)
T PF01861_consen 118 TDPPYTP---EG--LKLFLSRGIEALKGEGC 143 (243)
T ss_dssp E---SSH---HH--HHHHHHHHHHTB-STT-
T ss_pred eCCCCCH---HH--HHHHHHHHHHHhCCCCc
Confidence 9986421 11 12388889999998873
No 217
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00065 Score=63.05 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=86.3
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCC-CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 225 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~-~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~ 225 (387)
.|+..-.-+ ..+..+|+|||+-.|+-+..+++... ..+|++||++|.- ..+.|.++.+|...
T Consensus 34 ~el~~k~~i--~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~ 96 (205)
T COG0293 34 LELNEKFKL--FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITD 96 (205)
T ss_pred HHHHHhcCe--ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccC
Confidence 444444422 35678999999999999999988743 2359999998752 13568888888753
Q ss_pred -----HH-hhCCCCCeeEEEEcCCCCCCC---ccccc----hHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHH
Q 016578 226 -----FL-RQVPRGKYDAIIVDSSDPVGP---AQELV----EKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISIC 292 (387)
Q Consensus 226 -----~l-~~~~~~~fDvII~D~~dp~~~---~~~L~----~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l 292 (387)
-+ .......+|+|++|......- .++.. ....++.+.+.|+|||.+++- .+.......+++.+
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K----~fqg~~~~~~l~~~ 172 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK----VFQGEDFEDLLKAL 172 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE----EEeCCCHHHHHHHH
Confidence 12 222344579999997653221 11111 123456677899999999852 23444567888888
Q ss_pred HHHcC
Q 016578 293 RETFK 297 (387)
Q Consensus 293 ~~~F~ 297 (387)
++.|.
T Consensus 173 ~~~F~ 177 (205)
T COG0293 173 RRLFR 177 (205)
T ss_pred HHhhc
Confidence 99998
No 218
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.00067 Score=63.56 Aligned_cols=98 Identities=21% Similarity=0.199 Sum_probs=73.5
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCC-eeEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGK-YDAII 239 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~-fDvII 239 (387)
+++++|||+|.|-=+.-++=..+..+||.+|-...=+...++-..+. +-++++++++.+.++-.+ .+ ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~---~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQE---KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhcccc---cccCcEEE
Confidence 68999999999987777664445567999999887777666654443 336899999999887532 23 99999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+-+..+.. .+.+.+...|++||.++.
T Consensus 141 sRAva~L~--------~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 141 SRAVASLN--------VLLELCLPLLKVGGGFLA 166 (215)
T ss_pred eehccchH--------HHHHHHHHhcccCCcchh
Confidence 76654322 378889999999998764
No 219
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.0006 Score=65.52 Aligned_cols=101 Identities=25% Similarity=0.325 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh--HHhhCCCCCe
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~--~l~~~~~~~f 235 (387)
....+||+-|.|+|++...+++. .+-.++...|....-.+.|++.|.+.. + ..++++.+-|... |.. ....+
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i-~~~vt~~hrDVc~~GF~~--ks~~a 178 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--I-GDNVTVTHRDVCGSGFLI--KSLKA 178 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--C-CcceEEEEeecccCCccc--ccccc
Confidence 45669999999999999999986 456799999999999999999887653 3 3488888888643 322 24689
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCC-eEEe
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGG-VLCN 273 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgG-vlv~ 273 (387)
|+|++|.+.|+.. +-.+..+|+.+| .+|.
T Consensus 179 DaVFLDlPaPw~A---------iPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 179 DAVFLDLPAPWEA---------IPHAAKILKDEGGRLCS 208 (314)
T ss_pred ceEEEcCCChhhh---------hhhhHHHhhhcCceEEe
Confidence 9999999998854 234455788877 6664
No 220
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.57 E-value=0.00025 Score=65.83 Aligned_cols=110 Identities=17% Similarity=0.248 Sum_probs=73.4
Q ss_pred EEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccC-CCCCCCEEEEEcch-hhHHh--hCCCCCeeEE
Q 016578 163 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAV-GFEDPRVRLHIGDA-VEFLR--QVPRGKYDAI 238 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~-~~~d~rv~v~~gD~-~~~l~--~~~~~~fDvI 238 (387)
+||+||+|+|..+..++++.+...-.--|+|+......+.+...... .+. +-+.+-+.+. ..+.. ....+.||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~-~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR-PPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC-CCeEeecCCCCCccccccccCCCCccee
Confidence 69999999999999999998877888899999987766666543311 111 2223222221 11110 0024589999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
++--.-++.+.. -...+|+.+.++|++||+|++..
T Consensus 107 ~~~N~lHI~p~~--~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 107 FCINMLHISPWS--AVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred eehhHHHhcCHH--HHHHHHHHHHHhCCCCCEEEEeC
Confidence 965444444422 24678999999999999999854
No 221
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.52 E-value=0.00029 Score=71.49 Aligned_cols=104 Identities=25% Similarity=0.394 Sum_probs=78.0
Q ss_pred CCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
+-+|||.=+|+|.=+...++. .++.+|++-|+|++.++..++++..+ ++++.++++...|+...+... .+.||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N--~~~~~~~~v~~~DAn~ll~~~-~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN--GLEDERIEVSNMDANVLLYSR-QERFDVID 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC--T-SGCCEEEEES-HHHHHCHS-TT-EEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc--cccCceEEEehhhHHHHhhhc-cccCCEEE
Confidence 458999889999888777776 67889999999999999999997655 334448999999999988533 56899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|++- .+ ..|+..+.+.++.||+|++.+
T Consensus 127 lDPfG---Sp-----~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 LDPFG---SP-----APFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp E--SS----------HHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCC---Cc-----cHhHHHHHHHhhcCCEEEEec
Confidence 98763 32 249999999999999998653
No 222
>PRK04148 hypothetical protein; Provisional
Probab=97.51 E-value=0.00028 Score=61.28 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCcccH-HHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGDGG-VLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~-~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+..+|||||+|.|. ++..+.+.+ .+|+++|+++..++.+++. .++++.+|.++-=.+. -+.+|+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~-y~~a~l 80 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEI-YKNAKL 80 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHH-HhcCCE
Confidence 345799999999996 887887764 6999999999999988775 3578888876531111 136899
Q ss_pred EEE
Q 016578 238 IIV 240 (387)
Q Consensus 238 II~ 240 (387)
|..
T Consensus 81 iys 83 (134)
T PRK04148 81 IYS 83 (134)
T ss_pred EEE
Confidence 885
No 223
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.44 E-value=0.00029 Score=65.59 Aligned_cols=118 Identities=18% Similarity=0.291 Sum_probs=65.9
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccccc-----CCCCCCCEEEEEc
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-----VGFEDPRVRLHIG 221 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~-----~~~~d~rv~v~~g 221 (387)
.+++..+. ..+...++|||+|.|.+...++-..+..+.++||+.+...+.|++....+. .+....++++..+
T Consensus 32 ~~il~~~~---l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 32 SKILDELN---LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHhC---CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 44554443 345568999999999999888766667889999999999998876433221 1344578999999
Q ss_pred chhhH--HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 222 DAVEF--LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 222 D~~~~--l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
|..+. .... -..-|+|+++..- .. +.+ ...+......||+|-.++.
T Consensus 109 dfl~~~~~~~~-~s~AdvVf~Nn~~-F~--~~l--~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 109 DFLDPDFVKDI-WSDADVVFVNNTC-FD--PDL--NLALAELLLELKPGARIIS 156 (205)
T ss_dssp -TTTHHHHHHH-GHC-SEEEE--TT-T---HHH--HHHHHHHHTTS-TT-EEEE
T ss_pred CccccHhHhhh-hcCCCEEEEeccc-cC--HHH--HHHHHHHHhcCCCCCEEEE
Confidence 97542 2211 1247999987542 11 111 1234455567888887775
No 224
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.44 E-value=0.0011 Score=64.64 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=93.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
...+|||+.++.|+=+..++... +...|+++|+++.-+...++++.... -.++.+...|+..+........||.|
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG----VFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-----SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC----CceEEEEeeccccccccccccccchh
Confidence 45689999999999998888763 35699999999999999999887662 35788888999987544334469999
Q ss_pred EEcCCCCC-CC----cc-------------ccchHHHHHHHHHhc----cCCCeEEecccccchhhhHHHHHHHHHHHHc
Q 016578 239 IVDSSDPV-GP----AQ-------------ELVEKPFFDTIAKAL----RPGGVLCNMAESMWLHTHLIEDMISICRETF 296 (387)
Q Consensus 239 I~D~~dp~-~~----~~-------------~L~~~ef~~~l~~~L----kpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F 296 (387)
++|.+-.. +. ++ .-.+.+.++.+.+.+ +|||+++-.+.+... ..-..+.+.+-+.+
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~--eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP--EENEEVVEKFLKRH 238 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG--GGTHHHHHHHHHHS
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH--HHHHHHHHHHHHhC
Confidence 99976421 11 10 023567899999999 999999976655432 22334444433344
Q ss_pred C
Q 016578 297 K 297 (387)
Q Consensus 297 ~ 297 (387)
+
T Consensus 239 ~ 239 (283)
T PF01189_consen 239 P 239 (283)
T ss_dssp T
T ss_pred C
Confidence 4
No 225
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.39 E-value=0.00074 Score=66.56 Aligned_cols=100 Identities=22% Similarity=0.307 Sum_probs=73.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
..+-|||+|+|+|.+....+..+ .++|.+||.+. |.+.|++....+ .+. .|+.++.|-..+. +. +++.|+||
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~-MAqyA~~Lv~~N--~~~-~rItVI~GKiEdi--eL-PEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASE-MAQYARKLVASN--NLA-DRITVIPGKIEDI--EL-PEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhH-HHHHHHHHHhcC--Ccc-ceEEEccCccccc--cC-chhccEEE
Confidence 45689999999999988887764 78999999864 678888876544 233 4999999887653 33 46899999
Q ss_pred EcCCCCCCCccccchH---HHHHHHHHhccCCCeEE
Q 016578 240 VDSSDPVGPAQELVEK---PFFDTIAKALRPGGVLC 272 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~---ef~~~l~~~LkpgGvlv 272 (387)
... .+. -|+.+ |-|-..++.|+|+|.+.
T Consensus 249 SEP---MG~--mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 249 SEP---MGY--MLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred ecc---chh--hhhhHHHHHHHHHHHhhcCCCCccc
Confidence 543 332 23332 34567789999999876
No 226
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.38 E-value=0.00077 Score=62.36 Aligned_cols=110 Identities=17% Similarity=0.270 Sum_probs=63.7
Q ss_pred CCCEEEEEcCcccHHHHHH----Hh---c-CC-CceEEEEeCCHHHHHHHHhh-ccccc-----------------C-CC
Q 016578 160 SPKTVLVVGGGDGGVLREI----SR---H-DS-VELIDICEIDKMVIDVSKKY-FPELA-----------------V-GF 211 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el----~k---~-~~-~~~Vt~VEiD~~vi~~ar~~-~~~~~-----------------~-~~ 211 (387)
.+-+|+-.||++|.=+..+ .. . .+ .-+|.+.|||+.+++.|++- ++... . .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4559999999999754433 22 1 11 35899999999999999872 11110 0 11
Q ss_pred C-----CCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 212 E-----DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 212 ~-----d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
. ..+|++...|..+. ....+.||+|++--.- +. -+.-.....++.+++.|+|||.|++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~--~~~~~~fD~I~CRNVl-IY-F~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP--DPPFGRFDLIFCRNVL-IY-FDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE-SSG-GG-S-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEChHHcCceEEEecccCCC--CcccCCccEEEecCEE-EE-eCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 0 14788998888771 2235689999974321 11 1112246789999999999999986
No 227
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.37 E-value=0.00029 Score=65.69 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=61.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC--CCCCeeE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDA 237 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~--~~~~fDv 237 (387)
++..|+|.-||.|+.+...+.+. ..|.++||||.-+..||.++.-. |..+ |+++++||..+..+.. ....+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiY--GI~~-rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVY--GVPD-RITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceee--cCCc-eeEEEechHHHHHHHHhhhhheeee
Confidence 56688888888777777777665 47999999999999999998765 4566 9999999998765433 2335667
Q ss_pred EEEcCCCCCCC
Q 016578 238 IIVDSSDPVGP 248 (387)
Q Consensus 238 II~D~~dp~~~ 248 (387)
++. +.|++-
T Consensus 169 vf~--sppwgg 177 (263)
T KOG2730|consen 169 VFL--SPPWGG 177 (263)
T ss_pred eec--CCCCCC
Confidence 763 344543
No 228
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.33 E-value=0.00051 Score=68.15 Aligned_cols=96 Identities=25% Similarity=0.291 Sum_probs=70.9
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 240 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~ 240 (387)
-...+|+|+|.|.+++.++.+++ +|.+++.|...+..++.++. |.|+.+.+|+++- .| +-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~---~P--~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQD---TP--KGDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceeccccccc---CC--CcCeEEE
Confidence 46789999999999999998764 59999999888887777762 2378888998654 33 4568886
Q ss_pred cCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 241 DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 241 D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
----+..+.++ -..|++.|++.|+|||.+++
T Consensus 243 kWiLhdwtDed--cvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 243 KWILHDWTDED--CVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred EeecccCChHH--HHHHHHHHHHhCCCCCEEEE
Confidence 43322222122 23599999999999998875
No 229
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.31 E-value=0.0027 Score=59.61 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCH----HHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDK----MVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PR 232 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~----~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~ 232 (387)
....+||-+|..+|.+...++.. .+...|.+||.++ +.+.+|+++ +|+--+.+|++..-+-. --
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----------~NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----------PNIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----------TTEEEEES-TTSGGGGTTTS
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----------CceeeeeccCCChHHhhccc
Confidence 45679999999999999999886 3356899999999 456666664 68888999998543211 13
Q ss_pred CCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec--ccc---cchhhhHHHHHHHHHHHH-cC
Q 016578 233 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM--AES---MWLHTHLIEDMISICRET-FK 297 (387)
Q Consensus 233 ~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q--~~s---~~~~~~~~~~~~~~l~~~-F~ 297 (387)
+..|+|+.|...|.. .+-+...+..-||+||.+++. +.| .-.....+..-.+.+++. |.
T Consensus 142 ~~VDvI~~DVaQp~Q------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 142 EMVDVIFQDVAQPDQ------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp --EEEEEEE-SSTTH------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCE
T ss_pred ccccEEEecCCChHH------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCC
Confidence 489999999876542 233666777899999987743 222 122334666777777763 54
No 230
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.27 E-value=0.0021 Score=63.39 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=67.8
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
.|++..+.. .+...++|.=+|.|+-+..+++..+..+|+++|.|+.+++.+++.+..+ ..|++++.++..++
T Consensus 10 ~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l 81 (305)
T TIGR00006 10 DEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANF 81 (305)
T ss_pred HHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHH
Confidence 455555432 3446899999999999999998744479999999999999999987643 35899999998876
Q ss_pred Hhh---CCCCCeeEEEEcC
Q 016578 227 LRQ---VPRGKYDAIIVDS 242 (387)
Q Consensus 227 l~~---~~~~~fDvII~D~ 242 (387)
.+. ...+++|.|+.|+
T Consensus 82 ~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 82 FEHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHHhcCCCcccEEEEec
Confidence 432 2335799999883
No 231
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00019 Score=69.62 Aligned_cols=166 Identities=15% Similarity=0.137 Sum_probs=109.8
Q ss_pred ccCCCcceeeccceEEEEEeCCCeeEEEEEecCceeEEEEcCeEeecccchhHH-HHHHHhccccCCCCCCEEEEEcCcc
Q 016578 93 CSFAGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAY-QEMIAHLPLCSIPSPKTVLVVGGGD 171 (387)
Q Consensus 93 ~~~~g~~~~~~v~~vl~~~~S~~q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y-~eml~~l~l~~~~~p~~VL~IG~G~ 171 (387)
-+.++.--..+...|++.+.+++|++.+.. +..++++.+|+.....+.+. .| .+|+.. =..++|..+|| +
T Consensus 113 ~l~l~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk-~y~p~la~g------y~~~~v~l~iG-D 183 (337)
T KOG1562|consen 113 HLALCSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSK-QYLPTLACG------YEGKKVKLLIG-D 183 (337)
T ss_pred ccccccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHH-HHhHHHhcc------cCCCceEEEec-c
Confidence 344556667788899999999999999887 67899999887766655554 34 344333 24567888876 9
Q ss_pred cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhh----cccccCCCCCCCEEEEEcchhhH----HhhCCCCCeeEEEEcCC
Q 016578 172 GGVLREISRHDSVELIDICEIDKMVIDVSKKY----FPELAVGFEDPRVRLHIGDAVEF----LRQVPRGKYDAIIVDSS 243 (387)
Q Consensus 172 G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~----~~~~~~~~~d~rv~v~~gD~~~~----l~~~~~~~fDvII~D~~ 243 (387)
|....+.+++.+ ..|+++|+|.-+...+..+ |..+..++....+.+.++|-.-. +++. .+||-++.+..
T Consensus 184 G~~fl~~~~~~~-~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~--r~~~~~~f~~t 260 (337)
T KOG1562|consen 184 GFLFLEDLKENP-FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEG--RSFCYVIFDLT 260 (337)
T ss_pred HHHHHHHhccCC-ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHH--HHhHHHhcCcc
Confidence 999999887753 6999999998888777665 33344456677888888887533 3331 24554444432
Q ss_pred C------CCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 244 D------PVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 244 d------p~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+ |-.|...+ .|..+.. |+|+|-+-++.
T Consensus 261 ~ya~ttvPTypsg~i----gf~l~s~-~~~~~~~~~p~ 293 (337)
T KOG1562|consen 261 AYAITTVPTYPSGRI----GFMLCSK-LKPDGKYKTPG 293 (337)
T ss_pred ceeeecCCCCccceE----EEEEecc-cCCCCCccCCC
Confidence 2 11221110 2333444 89999888654
No 232
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.002 Score=64.43 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=82.5
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 240 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~ 240 (387)
+.+|||-=+|+|.=+...+...+..+|++=||+|..+++.++++..+ ......+++.|+..++.+. ...||+|=+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N----~~~~~~v~n~DAN~lm~~~-~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN----SGEDAEVINKDANALLHEL-HRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc----CcccceeecchHHHHHHhc-CCCccEEec
Confidence 78999999999998888777655559999999999999999998654 2345667779999998765 368999998
Q ss_pred cCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 241 DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 241 D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|++-.-. +|++.+.+.++.+|++++.+
T Consensus 128 DPFGSPa--------PFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPFGSPA--------PFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCCc--------hHHHHHHHHhhcCCEEEEEe
Confidence 8664222 39999999999999998654
No 233
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.21 E-value=0.0027 Score=59.10 Aligned_cols=101 Identities=17% Similarity=0.264 Sum_probs=70.8
Q ss_pred EEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCC
Q 016578 164 VLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS 243 (387)
Q Consensus 164 VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~ 243 (387)
|.||||--|.++.++++.....+++++||++.-++.|++++... ++. .+++++.+|+++-+.. .+..|.|++..-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l~-~~i~~rlgdGL~~l~~--~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GLE-DRIEVRLGDGLEVLKP--GEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T-T-TTEEEEE-SGGGG--G--GG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCc-ccEEEEECCcccccCC--CCCCCEEEEecC
Confidence 68999999999999999988889999999999999999998765 333 5999999999988753 233788886432
Q ss_pred CCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 244 DPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 244 dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
... ...++++.....++..-.|++|-
T Consensus 76 -----GG~-lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 76 -----GGE-LIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp ------HH-HHHHHHHHTGGGGTT--EEEEEE
T ss_pred -----CHH-HHHHHHHhhHHHhccCCeEEEeC
Confidence 111 13456776666776666788764
No 234
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.0023 Score=66.43 Aligned_cols=110 Identities=20% Similarity=0.302 Sum_probs=80.2
Q ss_pred CCEEEEEcCcccHHHHHHHhc----CCCceEEEEeCCHHHHHHHHh-hcccccCCCCCCCEEEEEcchhhHHhhCCCCCe
Q 016578 161 PKTVLVVGGGDGGVLREISRH----DSVELIDICEIDKMVIDVSKK-YFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKY 235 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~----~~~~~Vt~VEiD~~vi~~ar~-~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~f 235 (387)
...|+++|+|-|=+.+..++. ..--++.+||-+|..+...+. ++..+ +.+|+++..|.+.|-. +.++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~w~a--p~eq~ 440 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRKWNA--PREQA 440 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccccCC--chhhc
Confidence 446888999999998887653 222478999999998877665 34433 5699999999999852 23689
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
|+|+..+-...+ ..-.++|.+..+.+.|||+|+.+-+..+.+
T Consensus 441 DI~VSELLGSFG--DNELSPECLDG~q~fLkpdgIsIP~sYtSy 482 (649)
T KOG0822|consen 441 DIIVSELLGSFG--DNELSPECLDGAQKFLKPDGISIPSSYTSY 482 (649)
T ss_pred cchHHHhhcccc--CccCCHHHHHHHHhhcCCCceEccchhhhh
Confidence 999865433232 223467899999999999999986654433
No 235
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.19 E-value=0.0014 Score=63.45 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=75.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccc------------ccC--------------C---
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPE------------LAV--------------G--- 210 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~------------~~~--------------~--- 210 (387)
++.+||+-|||-|.++.++++.+ -.+.+.|.|--|+=.++--+.. .+. .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45699999999999999999984 5899999999886554432111 000 0
Q ss_pred -------CCCCCEEEEEcchhhHHhhC-CCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 211 -------FEDPRVRLHIGDAVEFLRQV-PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 211 -------~~d~rv~v~~gD~~~~l~~~-~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
-...++.+..||..++-... ..++||+|++..+- ..+.. -.++++.+.+.|||||+.+...
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI--DTA~N--i~~Yi~tI~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI--DTAEN--IIEYIETIEHLLKPGGYWINFG 202 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe--echHH--HHHHHHHHHHHhccCCEEEecC
Confidence 01247888889987764321 13689999965331 11222 2359999999999999888654
No 236
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.002 Score=64.91 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=80.4
Q ss_pred CCEEEEEcCcccHHHHHHHhcCC-C-------------------------------c-------eEEEEeCCHHHHHHHH
Q 016578 161 PKTVLVVGGGDGGVLREISRHDS-V-------------------------------E-------LIDICEIDKMVIDVSK 201 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~-~-------------------------------~-------~Vt~VEiD~~vi~~ar 201 (387)
.+.++|-=||+|.++.|.+-... + . .+.++|||+.+++.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 35899999999999999876532 0 1 3779999999999999
Q ss_pred hhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCcc-----ccchHHHHHHHHHhccCCCeEEecc
Q 016578 202 KYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQ-----ELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 202 ~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~-----~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.+.... +.. ..+++..+|+..+-... +.+|+||++++....... .||. +|-+.+++.++-.+.+++.+
T Consensus 272 ~NA~~A--Gv~-d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~-~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 272 ANARAA--GVG-DLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYR-EFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHhc--CCC-ceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHH-HHHHHHHHHhcCCceEEEEc
Confidence 997654 333 48999999988763321 589999999876443222 1433 57778888888888887644
No 237
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.14 E-value=0.0068 Score=60.20 Aligned_cols=112 Identities=15% Similarity=0.115 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcC----CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEE--EEcchhhHHhhC--
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHD----SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRL--HIGDAVEFLRQV-- 230 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~----~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v--~~gD~~~~l~~~-- 230 (387)
+....++++|||+|.=++.+++.. .....+.||||.+.++.+.+.+..- .-|.+++ +.+|..+-+...
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence 345589999999999888776542 2347899999999999999988621 1356666 778765543211
Q ss_pred --CCCCeeEEEEcCCCCCCCccccchHHHHHHHHH-hccCCCeEEecc
Q 016578 231 --PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK-ALRPGGVLCNMA 275 (387)
Q Consensus 231 --~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~-~LkpgGvlv~q~ 275 (387)
......+|+.-.+ .++.....-...|++.+++ .|+|||.|++-.
T Consensus 151 ~~~~~~~r~~~flGS-siGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 151 PENRSRPTTILWLGS-SIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccccCCccEEEEeCc-cccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1224566664322 1222222224579999999 999999988643
No 238
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.12 E-value=0.0013 Score=65.54 Aligned_cols=87 Identities=17% Similarity=0.276 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+..++||||++.|+.+..+++.+ .+|++||..+..-. + .++++|+.+.+|++.+... .+.+|+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~-----L------~~~~~V~h~~~d~fr~~p~--~~~vDwv 274 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQS-----L------MDTGQVEHLRADGFKFRPP--RKNVDWL 274 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHh-----h------hCCCCEEEEeccCcccCCC--CCCCCEE
Confidence 456799999999999999999985 49999996553211 1 1478999999999998643 4589999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCC
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPG 268 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~Lkpg 268 (387)
++|.... | ....+.+.+.|..|
T Consensus 275 VcDmve~--P------~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVEK--P------ARVAELMAQWLVNG 296 (357)
T ss_pred EEecccC--H------HHHHHHHHHHHhcC
Confidence 9998741 2 13566777777655
No 239
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.09 E-value=0.0031 Score=58.69 Aligned_cols=117 Identities=24% Similarity=0.276 Sum_probs=64.5
Q ss_pred cchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhc----CCCceEEEEeCCHHHH-HHHHhhcccccCCCCCCC
Q 016578 141 KDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRH----DSVELIDICEIDKMVI-DVSKKYFPELAVGFEDPR 215 (387)
Q Consensus 141 ~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~----~~~~~Vt~VEiD~~vi-~~ar~~~~~~~~~~~d~r 215 (387)
.|-..|||++-.+ +|+.|+++|.-.|+.+...+.. .+..+|++||||-.-. ..+.+..|. .+|
T Consensus 19 ~Dm~~~qeli~~~------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~------~~r 86 (206)
T PF04989_consen 19 QDMVAYQELIWEL------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM------SPR 86 (206)
T ss_dssp HHHHHHHHHHHHH--------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TT
T ss_pred HHHHHHHHHHHHh------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc------cCc
Confidence 3556788888765 7899999999999988876542 2567999999975432 222222221 379
Q ss_pred EEEEEcchhhH--Hhh---C-CCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 216 VRLHIGDAVEF--LRQ---V-PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 216 v~v~~gD~~~~--l~~---~-~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
++++.||..+- +.. . ......+||.|+...... ...-++.....+++|+.+++.
T Consensus 87 I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~h-----vl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 87 ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEH-----VLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp EEEEES-SSSTHHHHTSGSS----SSEEEEESS----SS-----HHHHHHHHHHT--TT-EEEET
T ss_pred eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHH-----HHHHHHHhCccCCCCCEEEEE
Confidence 99999998532 221 1 123566888888743222 223466788999999999864
No 240
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.00 E-value=0.004 Score=60.45 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=61.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh-CCCCCeeE
Q 016578 160 SPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYDA 237 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~-~~~~~fDv 237 (387)
.|++|||+|+|.|..+..+... +...++++||.++.++++++.-+..... ...... ..+ +..+ .+-...|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~---~~~~~~-~~~---~~~~~~~~~~~DL 105 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN---NRNAEW-RRV---LYRDFLPFPPDDL 105 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc---cccchh-hhh---hhcccccCCCCcE
Confidence 6889999999999887776654 3467999999999999999987654311 111111 111 1111 11124599
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
||+.-.-..-+. --..++++.+.+.+++ +|++
T Consensus 106 vi~s~~L~EL~~--~~r~~lv~~LW~~~~~--~LVl 137 (274)
T PF09243_consen 106 VIASYVLNELPS--AARAELVRSLWNKTAP--VLVL 137 (274)
T ss_pred EEEehhhhcCCc--hHHHHHHHHHHHhccC--cEEE
Confidence 996533211111 1234577777777766 5553
No 241
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.92 E-value=0.013 Score=47.32 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=65.1
Q ss_pred EEEEcCcccHHHHHHHhcCCC-ceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCC-CCeeEEEEc
Q 016578 164 VLVVGGGDGGVLREISRHDSV-ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR-GKYDAIIVD 241 (387)
Q Consensus 164 VL~IG~G~G~~~~el~k~~~~-~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~-~~fDvII~D 241 (387)
+|++|||.|... .+.+.... ..++++|+++.+++.++..... .. ...+.+..+|.......... ..||++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG---LGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC---CCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999976 33333221 3788899999999985554321 11 11167888887652112222 379999433
Q ss_pred CCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 242 SSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 242 ~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
....... ....+..+.+.|+|+|.++...
T Consensus 127 ~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 127 LVLHLLP-----PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred eehhcCC-----HHHHHHHHHHhcCCCcEEEEEe
Confidence 2211111 3568999999999999888654
No 242
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.85 E-value=0.0033 Score=61.49 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=68.9
Q ss_pred CCCEEEEEcCcccHHHHHH----HhcC----CCceEEEEeCCHHHHHHHHhhc-cccc--------------------CC
Q 016578 160 SPKTVLVVGGGDGGVLREI----SRHD----SVELIDICEIDKMVIDVSKKYF-PELA--------------------VG 210 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el----~k~~----~~~~Vt~VEiD~~vi~~ar~~~-~~~~--------------------~~ 210 (387)
.+-+|+..||.+|.-+..+ .... ..-+|+++|||+.+++.|++-. +... .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3469999999999754443 2321 1247999999999999998741 1110 00
Q ss_pred ---CC---CCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 211 ---FE---DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 211 ---~~---d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+. ..+|++...|..+.-. ...+.||+|++--.-..- ..-.....++.+.++|+|||+|++
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~-~~~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQW-AVPGPFDAIFCRNVMIYF--DKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCC-ccCCCcceeeHhhHHhcC--CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 00 1356677777654210 113689999973211000 111245689999999999999885
No 243
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.83 E-value=0.0037 Score=61.67 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=62.1
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
+|.+.++. ..+...++|.=.|.||.+..+++..+..+++++|.|+++++.+++.+... +.|+.++.++..++
T Consensus 10 ~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 10 KEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNL 81 (310)
T ss_dssp HHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGH
T ss_pred HHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHH
Confidence 56666654 23445889998999999999998755589999999999999999988654 56999999886554
Q ss_pred ---HhhC-CCCCeeEEEEcC
Q 016578 227 ---LRQV-PRGKYDAIIVDS 242 (387)
Q Consensus 227 ---l~~~-~~~~fDvII~D~ 242 (387)
+... ...++|.|+.|+
T Consensus 82 ~~~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFDL 101 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE-
T ss_pred HHHHHHccCCCccCEEEEcc
Confidence 3443 345899999984
No 244
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.79 E-value=0.0036 Score=53.77 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=46.0
Q ss_pred EEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcch
Q 016578 164 VLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA 223 (387)
Q Consensus 164 VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~ 223 (387)
|||||||.|..+..+++..+..+|+++|.++.+.+.+++++.... + ++++++....
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~--~--~~v~~~~~al 57 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN--L--PNVVLLNAAV 57 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC--C--CcEEEEEeee
Confidence 899999999999999988766699999999999999999876431 1 3577776653
No 245
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.67 E-value=0.014 Score=54.58 Aligned_cols=106 Identities=9% Similarity=0.142 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
+...++.||||--+.++.++.+......++++|+++.-++.|.++++.... .++++++.+|++.-+.. ++.+|+|
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l---~~~i~vr~~dgl~~l~~--~d~~d~i 89 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL---SERIDVRLGDGLAVLEL--EDEIDVI 89 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC---cceEEEeccCCccccCc--cCCcCEE
Confidence 445569999999999999999988889999999999999999999987632 46999999999876643 4579999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
++..-. .. .-.++++.-.+.|+.-=.++.|-
T Consensus 90 vIAGMG-----G~-lI~~ILee~~~~l~~~~rlILQP 120 (226)
T COG2384 90 VIAGMG-----GT-LIREILEEGKEKLKGVERLILQP 120 (226)
T ss_pred EEeCCc-----HH-HHHHHHHHhhhhhcCcceEEECC
Confidence 875421 11 13357788888887555677663
No 246
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.67 E-value=0.012 Score=57.46 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=67.9
Q ss_pred HHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCC-CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchh
Q 016578 146 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV 224 (387)
Q Consensus 146 Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~-~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~ 224 (387)
.+|.+..+.. ......+|.=.|.|+.++.+++..+ ..+++++|.||.+++.|++.+..+ ++|++++++...
T Consensus 12 l~E~i~~L~~---~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~ 83 (314)
T COG0275 12 LNEVVELLAP---KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHhccc---CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHH
Confidence 4566655432 2346789999999999999998754 456999999999999999998765 579999998865
Q ss_pred hHHh---hCCCCCeeEEEEcC
Q 016578 225 EFLR---QVPRGKYDAIIVDS 242 (387)
Q Consensus 225 ~~l~---~~~~~~fDvII~D~ 242 (387)
++.. ....+++|-|+.|+
T Consensus 84 ~l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 84 NLAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHHhcCCCceeEEEEec
Confidence 5432 22345899999884
No 247
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.66 E-value=0.013 Score=57.48 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=53.1
Q ss_pred hhHHHHHHHhccccCC---CCCCEEEEEcCcccHH-HHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEE
Q 016578 143 ECAYQEMIAHLPLCSI---PSPKTVLVVGGGDGGV-LREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRL 218 (387)
Q Consensus 143 e~~Y~eml~~l~l~~~---~~p~~VL~IG~G~G~~-~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v 218 (387)
...|-..+..+..... +..-++||||+|.-.+ ....++.. .-++++.|||+..++.|+++..... .+ ..+|++
T Consensus 82 R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~-~L-~~~I~l 158 (299)
T PF05971_consen 82 RLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNP-NL-ESRIEL 158 (299)
T ss_dssp HHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT--T--TTTEEE
T ss_pred hHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhcc-cc-ccceEE
Confidence 3456554544433222 2245899999997755 33334443 4699999999999999999986541 12 458988
Q ss_pred EEcch----hhHHhhCCCCCeeEEEEcCCCCC
Q 016578 219 HIGDA----VEFLRQVPRGKYDAIIVDSSDPV 246 (387)
Q Consensus 219 ~~gD~----~~~l~~~~~~~fDvII~D~~dp~ 246 (387)
+...- +.-+.. ..+.||+.+++++...
T Consensus 159 ~~~~~~~~i~~~i~~-~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 159 RKQKNPDNIFDGIIQ-PNERFDFTMCNPPFYS 189 (299)
T ss_dssp EE--ST-SSTTTSTT---S-EEEEEE-----S
T ss_pred EEcCCccccchhhhc-ccceeeEEecCCcccc
Confidence 76532 222222 2468999999876543
No 248
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.65 E-value=0.012 Score=56.77 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=61.6
Q ss_pred CCCEEEEEcCc--ccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCC--EEEEEcchhhH---Hhh--
Q 016578 160 SPKTVLVVGGG--DGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPR--VRLHIGDAVEF---LRQ-- 229 (387)
Q Consensus 160 ~p~~VL~IG~G--~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~r--v~v~~gD~~~~---l~~-- 229 (387)
.-...|||||| +-....++++. .+..+|+.||+||.++..++..+.. +++ ..++.+|.++- +..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~------~~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD------NPRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TTSEEEEEE--TT-HHHHHCSHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC------CCCccEEEEeCCCCCHHHHhcCHH
Confidence 45689999999 45577888763 5678999999999999999998864 345 89999998753 210
Q ss_pred C-----CCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 230 V-----PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 230 ~-----~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
. -++..-++++.........+ --...++.+++.|.||..|++..
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~--dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDD--DPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGC--THHHHHHHHHCCS-TT-EEEEEE
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCcc--CHHHHHHHHHHhCCCCceEEEEe
Confidence 0 01233344443221111111 13468999999999999988643
No 249
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.59 E-value=0.0027 Score=60.17 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=52.2
Q ss_pred CEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCC-----CCCEEEEEcchhhHHhhCCCCCee
Q 016578 162 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFE-----DPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~-----d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
.+|||.=+|-|.-+..++..+ .+|+++|-+|.+..+.+.-+......-+ -.|++++.+|..+|++ .+++.||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHSS--S
T ss_pred CEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcCCCCC
Confidence 489999999999888888664 5899999999999888865543322111 1489999999999998 4467999
Q ss_pred EEEEcCCCCC
Q 016578 237 AIIVDSSDPV 246 (387)
Q Consensus 237 vII~D~~dp~ 246 (387)
+|.+|+-.|.
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999976654
No 250
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.56 E-value=0.0075 Score=55.85 Aligned_cols=113 Identities=24% Similarity=0.332 Sum_probs=84.5
Q ss_pred CEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccccc----CCCCCCCEEEEEcchhhHHhhC-CCCCee
Q 016578 162 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA----VGFEDPRVRLHIGDAVEFLRQV-PRGKYD 236 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~----~~~~d~rv~v~~gD~~~~l~~~-~~~~fD 236 (387)
-.+.|||||-|+++.+++-..|..-|.+.||--.|.+..++.+..+. .++ -+++.+...++..|+.+. ..++-+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~-~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQ-YPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccc-cccceeeeccchhhccchhhhcccc
Confidence 36899999999999999999889999999999999998888765432 222 467889999999998654 234444
Q ss_pred EEEEcCCCCCC----CccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVG----PAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~----~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
-++.-.+||.- ....+.+...+....-.|++||++.+..
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 45544566532 1234556667888888999999998754
No 251
>PRK11524 putative methyltransferase; Provisional
Probab=96.52 E-value=0.011 Score=57.46 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=47.5
Q ss_pred CCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCC----c-c----c---cchHHHHHHHHHhccCCCeEEecc
Q 016578 212 EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP----A-Q----E---LVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 212 ~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~----~-~----~---L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.....+++++|..++++..++++||+||+|++...+. . . . -+..+++..+.++|+|||.+++..
T Consensus 5 ~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 5 GNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred cCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3456689999999998877778999999998754311 0 0 0 112468899999999999998753
No 252
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.37 E-value=0.013 Score=56.70 Aligned_cols=110 Identities=20% Similarity=0.242 Sum_probs=67.6
Q ss_pred CCCEEEEEcCcccHH----HHHHHhcCC-----CceEEEEeCCHHHHHHHHhh-cc-ccc-CCC------------CC--
Q 016578 160 SPKTVLVVGGGDGGV----LREISRHDS-----VELIDICEIDKMVIDVSKKY-FP-ELA-VGF------------ED-- 213 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~----~~el~k~~~-----~~~Vt~VEiD~~vi~~ar~~-~~-~~~-~~~------------~d-- 213 (387)
++-+|+-.||++|-= +..+.++.+ .-+|++.|||..+++.|+.- ++ ... .++ .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 366999999999963 334444442 46999999999999999873 23 111 010 01
Q ss_pred --------CCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 214 --------PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 214 --------~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
..|.+...|...-.. ..+.||+|++--- ..--+.-.+...++..+..|+|||+|.+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNV--LIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNV--LIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcce--EEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 134444444332110 2457999996311 0001112256789999999999999886
No 253
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=0.093 Score=48.24 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEc-chhh---H---HhhC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG-DAVE---F---LRQV 230 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~g-D~~~---~---l~~~ 230 (387)
.+..+|||+|+..|.-+..+.+. .|...|.+|||-.- +| .+-++++.+ |..+ + .+..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p-------~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EP-------PEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cC-------CCCcccccccccCCHHHHHHHHHhC
Confidence 34569999999999998877665 47789999998321 12 123444444 3321 1 2223
Q ss_pred CCCCeeEEEEcCCC-CCCC--ccccchH----HHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcc
Q 016578 231 PRGKYDAIIVDSSD-PVGP--AQELVEK----PFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVH 301 (387)
Q Consensus 231 ~~~~fDvII~D~~d-p~~~--~~~L~~~----ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~ 301 (387)
+..+.|+|+.|... +.|. .++.-.- +.+......+.|+|.+++-. |.. ..-..+.+.|.++|. .|.
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~---w~g-~e~~~l~r~l~~~f~-~Vk 205 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL---WDG-SEEALLQRRLQAVFT-NVK 205 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE---ecC-CchHHHHHHHHHHhh-hcE
Confidence 56789999999754 2222 1221111 12233455678999998642 432 334567777888887 444
No 254
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.34 E-value=0.0017 Score=60.39 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
++...|-|+|||++.++..+.+. .+|...|+-.. +++ |+.+|..... .+++..|++
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva~-----------------n~~--Vtacdia~vP--L~~~svDv~ 126 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVAP-----------------NPR--VTACDIANVP--LEDESVDVA 126 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------------STT--EEES-TTS-S----TT-EEEE
T ss_pred CCCEEEEECCCchHHHHHhcccC---ceEEEeeccCC-----------------CCC--EEEecCccCc--CCCCceeEE
Confidence 44568999999999999765422 35777776221 233 5668875532 236789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
|..++--... -.+|++++.|.||+||.|.+
T Consensus 127 VfcLSLMGTn-----~~~fi~EA~RvLK~~G~L~I 156 (219)
T PF05148_consen 127 VFCLSLMGTN-----WPDFIREANRVLKPGGILKI 156 (219)
T ss_dssp EEES---SS------HHHHHHHHHHHEEEEEEEEE
T ss_pred EEEhhhhCCC-----cHHHHHHHHheeccCcEEEE
Confidence 9877642211 34799999999999999875
No 255
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.32 E-value=0.012 Score=61.15 Aligned_cols=125 Identities=19% Similarity=0.271 Sum_probs=70.3
Q ss_pred CeEeecccchhHHHHHHHhc-ccc-CCCCCCEEEEEcCcccHHHHHHHhcCCCceEE--EEeCCHHHHHHHHhh-ccccc
Q 016578 134 GIVQLTEKDECAYQEMIAHL-PLC-SIPSPKTVLVVGGGDGGVLREISRHDSVELID--ICEIDKMVIDVSKKY-FPELA 208 (387)
Q Consensus 134 G~~q~~e~de~~Y~eml~~l-~l~-~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt--~VEiD~~vi~~ar~~-~~~~~ 208 (387)
|-.|+...- ..|.+-|..+ ++. ....-+.+||||||.|.++..++.+. +..+. .-|..+..++.|-+. +|.+-
T Consensus 90 ggt~F~~Ga-~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleRGvpa~~ 167 (506)
T PF03141_consen 90 GGTMFPHGA-DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALERGVPAMI 167 (506)
T ss_pred CCccccCCH-HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhcCcchhh
Confidence 334444322 2465444443 332 22334578999999999999999874 33222 234555666666543 33321
Q ss_pred CCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcC-CCCCCCccccchHHHHHHHHHhccCCCeEEeccc
Q 016578 209 VGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDS-SDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 209 ~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~-~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
..+...| | ..+.+.||+|-+.- -.++.+...+ ++-.+-|+|+|||.++..+.
T Consensus 168 ~~~~s~r-----------L-Pfp~~~fDmvHcsrc~i~W~~~~g~----~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 168 GVLGSQR-----------L-PFPSNAFDMVHCSRCLIPWHPNDGF----LLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhhcccc-----------c-cCCccchhhhhcccccccchhcccc----eeehhhhhhccCceEEecCC
Confidence 1011111 1 12467899987542 2344443222 56688999999999997654
No 256
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.31 E-value=0.01 Score=56.74 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
+.|.+|+|||||-==++.-.....+...+.++|||..+++....++... .++.++.+.|...- .+....|+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~---~~~~~~Dla 175 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSD---PPKEPADLA 175 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTS---HTTSEESEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeecc---CCCCCcchh
Confidence 5689999999998777766565555679999999999999999998766 46788888885443 345679998
Q ss_pred EEc
Q 016578 239 IVD 241 (387)
Q Consensus 239 I~D 241 (387)
++=
T Consensus 176 Lll 178 (251)
T PF07091_consen 176 LLL 178 (251)
T ss_dssp EEE
T ss_pred hHH
Confidence 853
No 257
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.23 E-value=0.015 Score=50.58 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHh-----cCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISR-----HDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG 233 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k-----~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~ 233 (387)
.++..|+|+|+|-|.+++.++. . +..+|++||.++..++.++++.......+ ..++++..++...... ..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDL-EKRLSFIQGDIADESS---SD 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchh-hccchhhccchhhhcc---cC
Confidence 4577999999999999999988 5 45799999999999999998765542111 2355666555443311 23
Q ss_pred CeeEEE
Q 016578 234 KYDAII 239 (387)
Q Consensus 234 ~fDvII 239 (387)
..++++
T Consensus 99 ~~~~~v 104 (141)
T PF13679_consen 99 PPDILV 104 (141)
T ss_pred CCeEEE
Confidence 455555
No 258
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.19 E-value=0.068 Score=46.85 Aligned_cols=87 Identities=20% Similarity=0.350 Sum_probs=57.7
Q ss_pred eEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCC-CCCC----ccccchHHHHHH
Q 016578 186 LIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD-PVGP----AQELVEKPFFDT 260 (387)
Q Consensus 186 ~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~d-p~~~----~~~L~~~ef~~~ 260 (387)
+|.+.||-++.++.+++.+.... + ..|++++..+=....+-.++++.|+++.++-. |.+. ...-.|...++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--~-~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--L-EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--C-CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 58999999999999999987652 2 23899998765543322223489999988543 3322 122335678999
Q ss_pred HHHhccCCCeEEecc
Q 016578 261 IAKALRPGGVLCNMA 275 (387)
Q Consensus 261 l~~~LkpgGvlv~q~ 275 (387)
+.+.|+|||++++..
T Consensus 78 al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 78 ALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhhccCCEEEEEE
Confidence 999999999998754
No 259
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.044 Score=51.99 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=68.1
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
...+.+..+ ..+.+.+||||.-+|+++-.+++.. ..+|.+||..-..+...=+ .|||+.++..-=..+
T Consensus 68 ~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR---------~d~rV~~~E~tN~r~ 135 (245)
T COG1189 68 EKALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR---------NDPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHhcCc--CCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh---------cCCcEEEEecCChhh
Confidence 456666654 4678899999999999999999884 7899999986654433211 367877665433333
Q ss_pred Hhh-CCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEE
Q 016578 227 LRQ-VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 272 (387)
Q Consensus 227 l~~-~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv 272 (387)
+.. .-.+..|+|++|.+.-. -...+-.+...|+|++-++
T Consensus 136 l~~~~~~~~~d~~v~DvSFIS-------L~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 136 LTPEDFTEKPDLIVIDVSFIS-------LKLILPALLLLLKDGGDLV 175 (245)
T ss_pred CCHHHcccCCCeEEEEeehhh-------HHHHHHHHHHhcCCCceEE
Confidence 322 11347889999976411 1123445555555555444
No 260
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.11 E-value=0.053 Score=54.39 Aligned_cols=99 Identities=22% Similarity=0.292 Sum_probs=67.6
Q ss_pred CCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCeeEE
Q 016578 161 PKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDAI 238 (387)
Q Consensus 161 p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fDvI 238 (387)
..+|+++|+|. |.++..+++..+..+|+++|++++=+++|++++..-.. .++.-+ |...-+.+. ....+|++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~--~~~~~~----~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV--VNPSED----DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe--ecCccc----cHHHHHHHHhCCCCCCEE
Confidence 34899999996 55557778887889999999999999999997642211 111111 333323222 22369998
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|--+- ....++.+.++++++|.+++..
T Consensus 243 ie~~G----------~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 243 IEAVG----------SPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred EECCC----------CHHHHHHHHHHhcCCCEEEEEe
Confidence 85432 2247889999999999988654
No 261
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.09 E-value=0.18 Score=48.86 Aligned_cols=148 Identities=17% Similarity=0.158 Sum_probs=86.5
Q ss_pred EEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcC
Q 016578 163 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDS 242 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~ 242 (387)
+|+++-||.|+....+.+.+ .+.|.++|+|+..++..+++++.. ++.+|..++........+|+|+.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence 68999999999988877664 678899999999999999988632 5567776654321024699999876
Q ss_pred CCC-CC----------CccccchHHHHHHHHHhccCCCeEEecccccch--hhhHHHHHHHHHHHHcCCCcceEEEEeec
Q 016578 243 SDP-VG----------PAQELVEKPFFDTIAKALRPGGVLCNMAESMWL--HTHLIEDMISICRETFKGSVHYAWASVPT 309 (387)
Q Consensus 243 ~dp-~~----------~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~--~~~~~~~~~~~l~~~F~~~v~~~~~~iPt 309 (387)
+-. .. +...|+ .++++ +.+.++|.=+++=++..... ....+..+.+.+++.- ..+.+.....-.
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~-~~~~~-~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~G-Y~~~~~~l~a~~ 147 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLF-FEIIR-ILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELG-YNVYWKLLNASD 147 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHH-HHHHH-HHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCC-cEEEEEEEEHHH
Confidence 431 11 111122 23444 44456888666644332221 1234556666665432 123333333223
Q ss_pred cCCC---cEEEEEEecCC
Q 016578 310 YPSG---IIGFLICSTEG 324 (387)
Q Consensus 310 yp~g---~~gf~~ask~~ 324 (387)
|..- .=-|++|.++.
T Consensus 148 ~GvPQ~R~R~~~ia~~~~ 165 (275)
T cd00315 148 YGVPQNRERVFIIGIRKD 165 (275)
T ss_pred cCCCCCCcEEEEEEEeCC
Confidence 3211 23678887753
No 262
>PRK13699 putative methylase; Provisional
Probab=96.07 E-value=0.02 Score=54.08 Aligned_cols=58 Identities=17% Similarity=0.373 Sum_probs=44.6
Q ss_pred EEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCC----c----cc---cchHHHHHHHHHhccCCCeEEe
Q 016578 216 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP----A----QE---LVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 216 v~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~----~----~~---L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
.+++.+|+.+.++..+++++|+||+|++...+. . .. -+..++++.++++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 368899999999988889999999998764321 0 01 1234678899999999999885
No 263
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.02 E-value=0.0024 Score=59.30 Aligned_cols=93 Identities=24% Similarity=0.294 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..|.++||||.|+|.++..++.+. ++|.+.|++..|....++. +.+++ -..++++. +=+||+|
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl--~~~ew~~t--~~k~dli 173 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVL--TEIEWLQT--DVKLDLI 173 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCcee--eehhhhhc--CceeehH
Confidence 457899999999999999888764 7899999999998877663 11222 12345432 4479999
Q ss_pred EE-cCCCCCCCccccchHHHHHHHHHhccC-CCeEEe
Q 016578 239 IV-DSSDPVGPAQELVEKPFFDTIAKALRP-GGVLCN 273 (387)
Q Consensus 239 I~-D~~dp~~~~~~L~~~ef~~~l~~~Lkp-gGvlv~ 273 (387)
.+ +.-|....+ -..++.++.+|+| +|.+++
T Consensus 174 ~clNlLDRc~~p-----~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 174 LCLNLLDRCFDP-----FKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHHHhhcCh-----HHHHHHHHHHhccCCCcEEE
Confidence 84 222211111 1368899999999 887664
No 264
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=0.008 Score=62.12 Aligned_cols=106 Identities=20% Similarity=0.288 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCC--CCCe
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP--RGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~--~~~f 235 (387)
.++-+||+.=+++|.-+...+++ +.+.+|++-|.|+..++..+++..... .+..++....|+...+-..+ ...|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhcccccccc
Confidence 45668999888888877666665 678899999999999999999876542 24578999999987664432 3689
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+|=+|++. .+ ..|+..+.+.++.||+|++-+
T Consensus 185 DvIDLDPyG---s~-----s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLDPYG---SP-----SPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecCCCC---Cc-----cHHHHHHHHHhhcCCEEEEEe
Confidence 999988653 32 149999999999999998643
No 265
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.92 E-value=0.013 Score=54.11 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=71.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
..++|||+|.|+|..+...++.+ ...|+..|++|..+...+-+...+ .-.+.+...|..- .+..||+|+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~an-----gv~i~~~~~d~~g-----~~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAAN-----GVSILFTHADLIG-----SPPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhc-----cceeEEeeccccC-----CCcceeEEE
Confidence 46899999999999999988875 679999999999888887776543 3467777777543 246899999
Q ss_pred E-cCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccc
Q 016578 240 V-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW 279 (387)
Q Consensus 240 ~-D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~ 279 (387)
. |.+.....+ ...+. ++..|+..|.-++. .+|+
T Consensus 148 agDlfy~~~~a-----~~l~~-~~~~l~~~g~~vlv-gdp~ 181 (218)
T COG3897 148 AGDLFYNHTEA-----DRLIP-WKDRLAEAGAAVLV-GDPG 181 (218)
T ss_pred eeceecCchHH-----HHHHH-HHHHHHhCCCEEEE-eCCC
Confidence 4 333211111 12333 77788888876653 3444
No 266
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.1 Score=48.54 Aligned_cols=126 Identities=19% Similarity=0.153 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh-CCCCCee
Q 016578 158 IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYD 236 (387)
Q Consensus 158 ~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~-~~~~~fD 236 (387)
.....+||-+|..+|.+...++.--+...|.+||.++.+.+-.-.-.. +.+|+--+.+|+..--+- .--+..|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~------~R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE------KRPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH------hCCCceeeecccCCcHHhhhhccccc
Confidence 356789999999999999999987655689999999886553322211 246777888998642110 0124699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeE--Eeccccc---chhhhHHHHHHHHHHHH
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL--CNMAESM---WLHTHLIEDMISICRET 295 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvl--v~q~~s~---~~~~~~~~~~~~~l~~~ 295 (387)
+|+.|...|... +-+...+..-|+++|.+ ++-+-|. -.....+++-.+.+++-
T Consensus 148 viy~DVAQp~Qa------~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~ 205 (231)
T COG1889 148 VIYQDVAQPNQA------EILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEG 205 (231)
T ss_pred EEEEecCCchHH------HHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhc
Confidence 999998876532 23566778889999944 3433222 22334566555666554
No 267
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.83 E-value=0.072 Score=56.22 Aligned_cols=110 Identities=19% Similarity=0.331 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccccc-CCCCCCC------EEEEEcchh----hH
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-VGFEDPR------VRLHIGDAV----EF 226 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~-~~~~d~r------v~v~~gD~~----~~ 226 (387)
..+.+|+++|+|. |..+...++..+. +|+++|++++..+.+++.=.... ....+.. ++....|.. +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 3578999999995 5566667777654 79999999999999988422110 0000000 000111211 11
Q ss_pred HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 227 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+.+. -+.+|+||.-...|..++..+ +.+.+.+.++|||+++.-
T Consensus 242 ~~~~-~~gaDVVIetag~pg~~aP~l----it~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 242 FAEQ-AKEVDIIITTALIPGKPAPKL----ITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHhc-cCCCCEEEECCCCCcccCcch----HHHHHHHhcCCCCEEEEE
Confidence 1111 136999997665544333322 247788899999998754
No 268
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.78 E-value=0.055 Score=56.09 Aligned_cols=104 Identities=17% Similarity=0.285 Sum_probs=73.9
Q ss_pred EEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEE--
Q 016578 163 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV-- 240 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~-- 240 (387)
++|.+|||.-.+..++-+- +...|+.+|+|+.+++........ ..+-..+...|..... .+++.||+||.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~-----~~~~~~~~~~d~~~l~--fedESFdiVIdkG 122 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAK-----ERPEMQMVEMDMDQLV--FEDESFDIVIDKG 122 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcccc-----CCcceEEEEecchhcc--CCCcceeEEEecC
Confidence 8999999999888777665 467999999999999988775421 3567888888876643 34678999983
Q ss_pred --cCCCCCCCc--cccchHHHHHHHHHhccCCCeEEec
Q 016578 241 --DSSDPVGPA--QELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 241 --D~~dp~~~~--~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|.......+ ....-...+..+.+.|+++|+++..
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 322211111 0112345688999999999997643
No 269
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.77 E-value=0.039 Score=53.46 Aligned_cols=125 Identities=19% Similarity=0.204 Sum_probs=79.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
..++|+++|-- -.++..++-..-.++|.+||||+..+..-.+...+.+ -.+++.+.-|.++-+.+.-.++||+++
T Consensus 152 ~gK~I~vvGDD-DLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g----~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVGDD-DLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG----YNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEcCc-hhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC----ccchhheeehhcccChHHHHhhCCeee
Confidence 46789999944 3444443333334899999999999999888776652 246888888988766543356899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCC---CeEEe-cccccchhhhHHHHHHHHHHHHcC
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPG---GVLCN-MAESMWLHTHLIEDMISICRETFK 297 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~Lkpg---Gvlv~-q~~s~~~~~~~~~~~~~~l~~~F~ 297 (387)
+|++..... -+-|+..=...|+.- |++-+ ..+++. +...++.+.+-.-|.
T Consensus 227 TDPpeTi~a-----lk~FlgRGI~tLkg~~~aGyfgiT~ressi---dkW~eiQr~lIn~~g 280 (354)
T COG1568 227 TDPPETIKA-----LKLFLGRGIATLKGEGCAGYFGITRRESSI---DKWREIQRILINEMG 280 (354)
T ss_pred cCchhhHHH-----HHHHHhccHHHhcCCCccceEeeeeccccH---HHHHHHHHHHHHhcC
Confidence 887643211 133666666678776 66643 233332 233445454444454
No 270
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.68 E-value=0.076 Score=53.12 Aligned_cols=94 Identities=24% Similarity=0.270 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+.++|+++|.| -|..+..+++... .+|+++|++++-.+.|++.-.. .++..--.+.++.. .+.||+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----------~~i~~~~~~~~~~~-~~~~d~ 232 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----------HVINSSDSDALEAV-KEIADA 232 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----------EEEEcCCchhhHHh-HhhCcE
Confidence 456799999865 5667777888654 8999999999999999987432 22221111223222 234999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
||.-.. + .-+....+.|+++|.+++..
T Consensus 233 ii~tv~-~----------~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 233 IIDTVG-P----------ATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEECCC-h----------hhHHHHHHHHhcCCEEEEEC
Confidence 996543 1 24778888999999998754
No 271
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.67 E-value=0.04 Score=52.96 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
++...|-|+|||.+-++. .. ..+|...|+-+ .+-+++.+|.++.. .++++.|++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a-------------------~~~~V~~cDm~~vP--l~d~svDva 232 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA-------------------VNERVIACDMRNVP--LEDESVDVA 232 (325)
T ss_pred cCceEEEecccchhhhhh---cc--ccceeeeeeec-------------------CCCceeeccccCCc--CccCcccEE
Confidence 445578999999998775 11 23566666511 23356778877732 346799999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+..++-.... -.+|+..++|.|++||.+-+
T Consensus 233 V~CLSLMgtn-----~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 233 VFCLSLMGTN-----LADFIKEANRILKPGGLLYI 262 (325)
T ss_pred EeeHhhhccc-----HHHHHHHHHHHhccCceEEE
Confidence 9776542211 24699999999999998864
No 272
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.016 Score=52.00 Aligned_cols=107 Identities=17% Similarity=0.094 Sum_probs=66.2
Q ss_pred CCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 161 PKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 161 p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
.++||++|+| +|..+..++..-++..|...|-+++.++-.++-.... ....-.+..+..-+...-.......+||.|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n-~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN-MASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc-cccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4689999999 5555666777777889999999999999888753221 0011123322222221111122345899999
Q ss_pred E-cCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 240 V-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 240 ~-D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+ |... -.-+.++..+.++..|+|.|.-++
T Consensus 109 aADClF-----fdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 109 AADCLF-----FDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred eccchh-----HHHHHHHHHHHHHHHhCcccceeE
Confidence 4 2221 111245578889999999998654
No 273
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.50 E-value=0.033 Score=57.99 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=70.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCC---CCe
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR---GKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~---~~f 235 (387)
+..+-+||+-||+|.+...++++ +.+|.+||++++.++-|+++...+ .-.+.++++|-+.+.+..... +.=
T Consensus 382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~N----gisNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQIN----GISNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhc----CccceeeeecchhhccchhcccCCCCC
Confidence 55578999999999999999986 589999999999999999987654 235789999966655433211 234
Q ss_pred e-EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeE
Q 016578 236 D-AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 271 (387)
Q Consensus 236 D-vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvl 271 (387)
+ +.|+|.+-.-. ...+++.+++.-++.=++
T Consensus 456 ~~v~iiDPpR~Gl------h~~~ik~l~~~~~~~rlv 486 (534)
T KOG2187|consen 456 TLVAIIDPPRKGL------HMKVIKALRAYKNPRRLV 486 (534)
T ss_pred ceEEEECCCcccc------cHHHHHHHHhccCccceE
Confidence 4 67777664222 123555555544454433
No 274
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.49 E-value=0.071 Score=54.36 Aligned_cols=133 Identities=15% Similarity=0.184 Sum_probs=94.2
Q ss_pred CC-CCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 159 PS-PKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 159 ~~-p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
|+ ..||||+.+..|+=+..++.. .....|.+-|.+..-+...+.++..+. -.+..+.+.|+.+|-...-..+||
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccCcccc
Confidence 44 459999999888887777653 234589999999999999999988773 246778889999875332234899
Q ss_pred EEEEcCCCCC---CCcc---------------ccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcC
Q 016578 237 AIIVDSSDPV---GPAQ---------------ELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 297 (387)
Q Consensus 237 vII~D~~dp~---~~~~---------------~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~ 297 (387)
-|++|++-.- ..-. .-++++.+....+.+++||+||-.+.+... ..-..+.+..-+-|+
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~--~ENE~vV~yaL~K~p 391 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV--EENEAVVDYALKKRP 391 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch--hhhHHHHHHHHHhCC
Confidence 9999976422 1100 123567888999999999999976655432 333455565556666
No 275
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=0.12 Score=52.06 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=93.4
Q ss_pred HHHHHhccccC--CCCCCEEEEEcCcccHHHHHHHhcCC----CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE
Q 016578 147 QEMIAHLPLCS--IPSPKTVLVVGGGDGGVLREISRHDS----VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI 220 (387)
Q Consensus 147 ~eml~~l~l~~--~~~p~~VL~IG~G~G~~~~el~k~~~----~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~ 220 (387)
+|...-+|.+. ..+..+|||+.+..|+=+..++.... ...|++=|+|+.=+...++.+... .++++.+..
T Consensus 140 qeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~ 215 (375)
T KOG2198|consen 140 QEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTN 215 (375)
T ss_pred hhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeec
Confidence 56666665433 35667999999999998877765321 227999999998777776655333 345666666
Q ss_pred cchhhHHhh-------CCCCCeeEEEEcCCC-CCCC---ccc---------------cchHHHHHHHHHhccCCCeEEec
Q 016578 221 GDAVEFLRQ-------VPRGKYDAIIVDSSD-PVGP---AQE---------------LVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 221 gD~~~~l~~-------~~~~~fDvII~D~~d-p~~~---~~~---------------L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
.|+..+-.. .....||-|++|.+- ..+. ... ..+...+....++|++||.+|-.
T Consensus 216 ~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 216 HDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred ccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 665443221 123479999999542 1111 111 22345778888999999999966
Q ss_pred cc--ccchhhhHHHHHHHHHHHHcC
Q 016578 275 AE--SMWLHTHLIEDMISICRETFK 297 (387)
Q Consensus 275 ~~--s~~~~~~~~~~~~~~l~~~F~ 297 (387)
+. ||..+.....++++.+...|.
T Consensus 296 TCSLnpieNEaVV~~~L~~~~~~~~ 320 (375)
T KOG2198|consen 296 TCSLNPIENEAVVQEALQKVGGAVE 320 (375)
T ss_pred ccCCCchhhHHHHHHHHHHhcCccc
Confidence 54 455555666666666655554
No 276
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.12 E-value=0.064 Score=50.22 Aligned_cols=126 Identities=16% Similarity=0.162 Sum_probs=73.1
Q ss_pred HHHHHHHhccccCCCCCCEEEEEcCcccHHHHHH--HhcCCCceEEEEeCCHHHHHHHHhhcccccC-CC----------
Q 016578 145 AYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREI--SRHDSVELIDICEIDKMVIDVSKKYFPELAV-GF---------- 211 (387)
Q Consensus 145 ~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el--~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~-~~---------- 211 (387)
+|+..+.+++- ..|-.+.|-.||+|.++-.+ ++......|.+-|||++++++|++++..+.. |+
T Consensus 39 i~qR~l~~l~~---~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~ 115 (246)
T PF11599_consen 39 IFQRALHYLEG---KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELREL 115 (246)
T ss_dssp HHHHHHCTSSS----S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC---CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHH
Confidence 46777666543 46779999999999988765 4445567999999999999999998654210 00
Q ss_pred ---------------------------CCCCEEEEEcchhhHHh--hC-CCCCeeEEEEcCCCCCCC-----ccccchHH
Q 016578 212 ---------------------------EDPRVRLHIGDAVEFLR--QV-PRGKYDAIIVDSSDPVGP-----AQELVEKP 256 (387)
Q Consensus 212 ---------------------------~d~rv~v~~gD~~~~l~--~~-~~~~fDvII~D~~dp~~~-----~~~L~~~e 256 (387)
......+...|.++.-. .. .....|+||+|.+..... ...--...
T Consensus 116 ~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ 195 (246)
T PF11599_consen 116 YEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQ 195 (246)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHH
Confidence 12346788888877432 11 133479999998753211 11112456
Q ss_pred HHHHHHHhccCCCeEEe
Q 016578 257 FFDTIAKALRPGGVLCN 273 (387)
Q Consensus 257 f~~~l~~~LkpgGvlv~ 273 (387)
+++.+...|-+++++++
T Consensus 196 ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 196 MLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHCCS-TT-EEEE
T ss_pred HHHHHHhhCCCCcEEEE
Confidence 89999999966666665
No 277
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.12 E-value=0.16 Score=50.28 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=61.1
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..++||++|+| .|..+..+++..+..+|++++.+++-.+.+++.-... -+.....|..+..+. .+.+|+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~-------vi~~~~~~~~~~~~~--~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK-------LVNPQNDDLDHYKAE--KGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE-------EecCCcccHHHHhcc--CCCCCEE
Confidence 46799999865 3555566777766668999999999999998742111 011111223333322 2359988
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|- +.. ....++.+.+.|+++|.++.-.
T Consensus 240 id-~~G---------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 FE-VSG---------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EE-CCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 73 321 1235778888999999998644
No 278
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.09 E-value=0.2 Score=44.34 Aligned_cols=145 Identities=16% Similarity=0.212 Sum_probs=83.4
Q ss_pred EEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccccc--CCCC-CCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 163 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA--VGFE-DPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~--~~~~-d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
+|.+||+|.++.+....-.....+|++...+++.++..++.-.... .+.. .+++.+ ..|..+.++ .-|+||
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~-----~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALE-----DADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHT-----T-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhC-----cccEEE
Confidence 6899999998887664322123799999999998887776422110 0111 235543 567655542 468999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccCCC-----c
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSG-----I 314 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp~g-----~ 314 (387)
+-.+. .+.+++++.+...|+++-.++.-.... .......+.+.+++.++. ..+....=|++... .
T Consensus 75 iavPs-------~~~~~~~~~l~~~l~~~~~ii~~~KG~--~~~~~~~~~~~i~~~~~~-~~~~~lsGP~~A~Ei~~~~p 144 (157)
T PF01210_consen 75 IAVPS-------QAHREVLEQLAPYLKKGQIIISATKGF--EPGTLLLLSEVIEEILPI-PRIAVLSGPSFAEEIAEGKP 144 (157)
T ss_dssp E-S-G-------GGHHHHHHHHTTTSHTT-EEEETS-SE--ETTEEEEHHHHHHHHHSS-CGEEEEESS--HHHHHTT--
T ss_pred ecccH-------HHHHHHHHHHhhccCCCCEEEEecCCc--ccCCCccHHHHHHHHhhh-cceEEeeCccHHHHHHcCCC
Confidence 76542 224678999999998777777544332 122223344555667773 33666677777532 2
Q ss_pred EEEEEEecC
Q 016578 315 IGFLICSTE 323 (387)
Q Consensus 315 ~gf~~ask~ 323 (387)
-.+++||++
T Consensus 145 t~~~~as~~ 153 (157)
T PF01210_consen 145 TAVVIASKN 153 (157)
T ss_dssp EEEEEEESS
T ss_pred eEEEEEecc
Confidence 366777764
No 279
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.02 E-value=0.16 Score=50.38 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=65.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCee
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fD 236 (387)
....+||++|+|. |..+..+++..+..+|+.+|+++.-+++||+ |..-.. ....+-. ...+..+-++.. .+..+|
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~~~-~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT-DPSSHKS-SPQELAELVEKALGKKQPD 244 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE-eeccccc-cHHHHHHHHHhhccccCCC
Confidence 3456999999995 6666777888888999999999999999999 432110 0011111 223333444332 224688
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+.|--+- ...-++....+++.+|.+++
T Consensus 245 ~~~dCsG----------~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 245 VTFDCSG----------AEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred eEEEccC----------chHHHHHHHHHhccCCEEEE
Confidence 8873321 11257788889999999554
No 280
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.01 E-value=0.036 Score=56.01 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
...+++++|||-|...+++.... .+.++++++++.-+..+....... .+ +.+-.++.+|..+-. .+++.||.+-
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~--~l-~~k~~~~~~~~~~~~--fedn~fd~v~ 183 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA--YL-DNKCNFVVADFGKMP--FEDNTFDGVR 183 (364)
T ss_pred ccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH--Hh-hhhcceehhhhhcCC--CCccccCcEE
Confidence 34489999999999999998874 578999999888777766654332 22 234455777754432 3467899887
Q ss_pred E-cCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 240 V-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 240 ~-D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+ |..-.... ....|+.+++.++|||++++
T Consensus 184 ~ld~~~~~~~-----~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 184 FLEVVCHAPD-----LEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EEeecccCCc-----HHHHHHHHhcccCCCceEEe
Confidence 3 43322222 34589999999999999996
No 281
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=94.85 E-value=0.19 Score=54.41 Aligned_cols=162 Identities=17% Similarity=0.139 Sum_probs=89.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEE---EeCCHHHHHHHHhhcccccCCCCCCCEEEEEcch-------------
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDI---CEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA------------- 223 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~---VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~------------- 223 (387)
.+...|..|-|+|+++..+++..+..+++. .|++.....=+.-.-|..-..+.+.+-+.+..|-
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~T 401 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPET 401 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCccH
Confidence 457889999999999999999987777754 5665554433222111100011122333333221
Q ss_pred hhH---HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCc
Q 016578 224 VEF---LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSV 300 (387)
Q Consensus 224 ~~~---l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v 300 (387)
.+| +++...-++|+|++|+--.............-+.+...|.++|.++.-+.-..+- ..-..++..+...|+ .|
T Consensus 402 W~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~-~~~~~il~~lg~~F~-~V 479 (675)
T PF14314_consen 402 WKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLL-SPDYNILDLLGRYFK-SV 479 (675)
T ss_pred HHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhh-cchhhHHHHHHhhcC-ce
Confidence 122 2222245799999997532222111122334456667889999999755211111 112357788889999 56
Q ss_pred ceEEEEeeccCCCcEEEEEEecCC
Q 016578 301 HYAWASVPTYPSGIIGFLICSTEG 324 (387)
Q Consensus 301 ~~~~~~iPtyp~g~~gf~~ask~~ 324 (387)
..+.+..-+--+ .--+++|++..
T Consensus 480 ~l~qT~~SSs~T-SEVYlv~~~~~ 502 (675)
T PF14314_consen 480 ELVQTQFSSSFT-SEVYLVFQKLK 502 (675)
T ss_pred EEEECCCCCCCc-eEEEEEEeccc
Confidence 655444322222 23478887653
No 282
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.046 Score=54.56 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=65.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.|+++||+|.|.|..+..+-.- +.-++++++|.++.+-++...-.......-.+-|..=+..|-..+ . ..+.|++|
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~l-p--~ad~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSL-P--AADLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCC-C--ccceeehh
Confidence 5789999999999877665543 455789999999987665543221111111122333333442222 1 23579988
Q ss_pred EE-cCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 239 IV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 239 I~-D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|+ |---|.+....++ ..++.+...++|||.|++.
T Consensus 190 i~~~eLl~d~~ek~i~--~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 190 IVLDELLPDGNEKPIQ--VNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred hhhhhhccccCcchHH--HHHHHHHHhccCCCeEEEE
Confidence 84 2222333322222 3788999999999988753
No 283
>PTZ00357 methyltransferase; Provisional
Probab=94.70 E-value=0.18 Score=54.41 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=67.6
Q ss_pred EEEEEcCcccHHHHHHHhc----CCCceEEEEeCCHHHHHHHHh---hcccccC--CCCCCCEEEEEcchhhHHhhC---
Q 016578 163 TVLVVGGGDGGVLREISRH----DSVELIDICEIDKMVIDVSKK---YFPELAV--GFEDPRVRLHIGDAVEFLRQV--- 230 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k~----~~~~~Vt~VEiD~~vi~~ar~---~~~~~~~--~~~d~rv~v~~gD~~~~l~~~--- 230 (387)
.|+++|+|-|-+...+++. .-..+|.+||-++..+...+. +...+.. ...+.+|+++..|.+.+-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999998887653 222489999999653323222 3333421 011358999999999983210
Q ss_pred ----C--CCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccC----CCe
Q 016578 231 ----P--RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRP----GGV 270 (387)
Q Consensus 231 ----~--~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~Lkp----gGv 270 (387)
+ -+++|+||..+--.+|. .-.++|.+..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGD--NELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGD--NELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhccccc--ccCCHHHHHHHHHhhhhhcccccc
Confidence 0 12799999765433332 22366788888888876 676
No 284
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.65 E-value=0.32 Score=49.27 Aligned_cols=99 Identities=21% Similarity=0.348 Sum_probs=57.0
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+.+|++||+| .|..+...++..+. +|+++|.+++-.+.+.+.+.. .+.....+... +.+. -..+|+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~~~-l~~~-l~~aDvV 234 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG--------RIHTRYSNAYE-IEDA-VKRADLL 234 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc--------eeEeccCCHHH-HHHH-HccCCEE
Confidence 46789999987 34445555555444 799999998877666554421 12222222222 2222 1368999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
|....-+......+.+.+.+ +.++++++++-
T Consensus 235 I~a~~~~g~~~p~lit~~~l----~~mk~g~vIvD 265 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLV----AQMKPGAVIVD 265 (370)
T ss_pred EEccccCCCCCCcCcCHHHH----hcCCCCCEEEE
Confidence 97543322222335555544 45799998874
No 285
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.56 E-value=0.29 Score=49.31 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=67.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcc-hhhHHhhC-CCCCe
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGD-AVEFLRQV-PRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD-~~~~l~~~-~~~~f 235 (387)
.+..+||++|+|. |..+..+++..+..+|++++.+++..+.++++... ..+.....| ..+.+.+. ..+.+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4567999999887 77888888887666799999999999999886421 112222221 33333322 23369
Q ss_pred eEEEEcCCCCC-----CCc-cc-----cchHHHHHHHHHhccCCCeEEecc
Q 016578 236 DAIIVDSSDPV-----GPA-QE-----LVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~-----~~~-~~-----L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+|+--..... ... .+ -.....++.+.+.|+++|.++...
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 98874321100 000 00 002346788889999999998654
No 286
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=94.52 E-value=0.96 Score=43.36 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=70.0
Q ss_pred EEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC--CCCCeeEEEEcC
Q 016578 165 LVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDAIIVDS 242 (387)
Q Consensus 165 L~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~--~~~~fDvII~D~ 242 (387)
|..=.|+=.+++.+++. ..+.+.+|+-|.-.+..+++|.. +.+++++..|+++-+... +..+=-+|++|.
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~------~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRR------DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--T------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhcc------CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 55667888888888875 36999999999999999988763 579999999999987654 344677999998
Q ss_pred CCCCCCccccchHHHHHHHHHhcc--CCCeEEecccccchhhhHHHHHHHHHHHHc
Q 016578 243 SDPVGPAQELVEKPFFDTIAKALR--PGGVLCNMAESMWLHTHLIEDMISICRETF 296 (387)
Q Consensus 243 ~dp~~~~~~L~~~ef~~~l~~~Lk--pgGvlv~q~~s~~~~~~~~~~~~~~l~~~F 296 (387)
+...... -....+.+.++++ +.|+++++- |.......+.+.+.+++.-
T Consensus 134 pYE~~~d----y~~v~~~l~~a~kR~~~G~~~iWY--Pi~~~~~~~~~~~~l~~~~ 183 (245)
T PF04378_consen 134 PYEQKDD----YQRVVDALAKALKRWPTGVYAIWY--PIKDRERVDRFLRALKALG 183 (245)
T ss_dssp ---STTH----HHHHHHHHHHHHHH-TTSEEEEEE--EESSHHHHHHHHHHHHHH-
T ss_pred CCCCchH----HHHHHHHHHHHHHhcCCcEEEEEe--ecccHHHHHHHHHHHHhcC
Confidence 6533221 1123444444444 789988754 4455566777888887663
No 287
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.44 E-value=0.21 Score=47.69 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhc-CCCceEEEEeCCH----HHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh-CCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDK----MVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPR 232 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~-~~~~~Vt~VEiD~----~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~-~~~ 232 (387)
+...+||-||.+.|.....+..- .+.--|.+||.++ +.+..|++ .+|+--++.|++.--+- ..-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRMLV 224 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeeee
Confidence 45679999999999999888875 4456789999875 34555555 35778888998753211 012
Q ss_pred CCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 233 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 233 ~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.-.|+|+.|.+.|...- -..-....-||+||.+++..
T Consensus 225 gmVDvIFaDvaqpdq~R------ivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 225 GMVDVIFADVAQPDQAR------IVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eeEEEEeccCCCchhhh------hhhhhhhhhhccCCeEEEEE
Confidence 36899999987665321 12234555799999888653
No 288
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.43 E-value=0.019 Score=55.30 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=61.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCC------------C-------------C
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFE------------D-------------P 214 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~------------d-------------~ 214 (387)
+..++||||+|.-..- .+......++|++.|..+.-.+..++++..- ..++ . .
T Consensus 56 ~g~~llDiGsGPtiy~-~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ-LLSACEWFEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG-GTTGGGTEEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh-hhhHHHhhcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4568999999973332 2222223579999999999999888887653 2221 0 1
Q ss_pred CEE-EEEcchhhH--Hhh--CCCCCeeEEEEcCCCC-CCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 215 RVR-LHIGDAVEF--LRQ--VPRGKYDAIIVDSSDP-VGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 215 rv~-v~~gD~~~~--l~~--~~~~~fDvII~D~~dp-~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
.|+ ++..|..+- +.. .-+.+||+|++-..-. ..+...- -...++.+.++|||||.|++.
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~-y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDE-YRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHH-HHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHH-HHHHHHHHHHHcCCCcEEEEE
Confidence 132 666776542 111 0023599988653211 1111111 233677888899999999864
No 289
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.32 E-value=0.36 Score=50.78 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=77.8
Q ss_pred HHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCC----CceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcch
Q 016578 148 EMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS----VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA 223 (387)
Q Consensus 148 eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~----~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~ 223 (387)
++|+++.. +....+|+|--||+|+......++.. ...+.+.|+++....+|+.++-... .+. .+.+..+|-
T Consensus 176 ~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg--i~~-~~~i~~~dt 250 (489)
T COG0286 176 ELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG--IEG-DANIRHGDT 250 (489)
T ss_pred HHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC--CCc-ccccccccc
Confidence 45555432 22345899999999999988766531 2568999999999999999864332 122 456666665
Q ss_pred hhHHhh---CCCCCeeEEEEcCCCC-C--CC-----------------ccccch-HHHHHHHHHhccCCCeEEe
Q 016578 224 VEFLRQ---VPRGKYDAIIVDSSDP-V--GP-----------------AQELVE-KPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 224 ~~~l~~---~~~~~fDvII~D~~dp-~--~~-----------------~~~L~~-~ef~~~l~~~LkpgGvlv~ 273 (387)
..-... ...++||.|+.++++. . .. +..--. ..|++.+...|+|+|...+
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 432211 1235799999887653 1 10 000111 4689999999999885543
No 290
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.31 E-value=0.42 Score=45.32 Aligned_cols=147 Identities=24% Similarity=0.317 Sum_probs=90.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhc------CCCc---eEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh-----
Q 016578 160 SPKTVLVVGGGDGGVLREISRH------DSVE---LIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE----- 225 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~------~~~~---~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~----- 225 (387)
.-+||+|+....|.-...+.+. ...+ +|++||+-+.+ | -+.|.-+.+|...
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHH
Confidence 4568999999989877776653 1112 39999996653 2 2456667777632
Q ss_pred -HHhhCCCCCeeEEEEcCC-CCCCC--ccccch----HHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcC
Q 016578 226 -FLRQVPRGKYDAIIVDSS-DPVGP--AQELVE----KPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 297 (387)
Q Consensus 226 -~l~~~~~~~fDvII~D~~-dp~~~--~~~L~~----~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~ 297 (387)
.++-...++-|+|++|.. |-.+. .++..+ ...+......|+|||.|+.- .+..+-..-+...++..|.
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK----ifRg~~tslLysql~~ff~ 181 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK----IFRGRDTSLLYSQLRKFFK 181 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh----hhccCchHHHHHHHHHHhh
Confidence 233344568999999954 32221 111112 23455667799999999952 3444445567777888888
Q ss_pred CCcceEEEEeec--cCCCcEEEEEEecCCCCCCC
Q 016578 298 GSVHYAWASVPT--YPSGIIGFLICSTEGPHVDF 329 (387)
Q Consensus 298 ~~v~~~~~~iPt--yp~g~~gf~~ask~~~~~~~ 329 (387)
. |. +.-|. -++..-.|++|.--.+|..|
T Consensus 182 k-v~---~~KPrsSR~sSiEaFvvC~~~~pp~g~ 211 (294)
T KOG1099|consen 182 K-VT---CAKPRSSRNSSIEAFVVCLGYCPPEGF 211 (294)
T ss_pred c-ee---eecCCccccccceeeeeecccCCccCC
Confidence 4 32 22332 33445689999865555555
No 291
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.31 E-value=0.29 Score=48.94 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
...++||++|+| .|..+..+++..+..+|+++|.+++-.+.+++.=. +.-+.....|..+.+.+...+.+|+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga-------~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA-------TATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC-------ceEeCCCchhHHHHHHHHhCCCCCE
Confidence 446799999865 35555667777665579999999999998876411 1111111223333343332336998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
||-.... .+.++...+.|+++|.++...
T Consensus 263 vid~~G~----------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 263 AFEMAGS----------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEECCCC----------hHHHHHHHHHHhcCCEEEEEc
Confidence 8732211 135777888999999988643
No 292
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.23 E-value=0.12 Score=43.21 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=61.4
Q ss_pred cccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCC-CCCeeEEEEcCCCCCCC
Q 016578 170 GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP-RGKYDAIIVDSSDPVGP 248 (387)
Q Consensus 170 G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~-~~~fDvII~D~~dp~~~ 248 (387)
|-|..+..++++.+ .+|+++|.++.-.+.++++-...- +.....|..+.+++.. .+.+|+||--..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~-------~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHV-------IDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEE-------EETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccccc-------ccccccccccccccccccccceEEEEecC-----
Confidence 45888899999877 899999999999999998642211 1111123445555442 347998885432
Q ss_pred ccccchHHHHHHHHHhccCCCeEEecc
Q 016578 249 AQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 249 ~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
..+.++...++|+++|.+++-.
T Consensus 68 -----~~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 68 -----SGDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp -----SHHHHHHHHHHEEEEEEEEEES
T ss_pred -----cHHHHHHHHHHhccCCEEEEEE
Confidence 2357889999999999998654
No 293
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.12 E-value=0.44 Score=46.95 Aligned_cols=101 Identities=12% Similarity=0.154 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
...++||+.|+|. |..+..+++..+...|++++.+++-.+.+++.-. +.-+.....+..+..+......+|.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA-------MQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-------ceEecCcccCHHHHHHHhcCCCCCe
Confidence 4567999998653 4444556776666568899999998888866321 1001111112122222222346886
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+++|+.- . ...+....+.|+++|.+++-.
T Consensus 232 ~v~d~~G---~------~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETAG---V------PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECCC---C------HHHHHHHHHHhhcCCEEEEEc
Confidence 6666542 1 236778889999999988643
No 294
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=0.068 Score=47.32 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=52.8
Q ss_pred HHHHHhccccCCCCC-CEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh
Q 016578 147 QEMIAHLPLCSIPSP-KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 225 (387)
Q Consensus 147 ~eml~~l~l~~~~~p-~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~ 225 (387)
.|-+.++.-+...++ .+.+|||.|+|.+....+++. ....++||++|-.+..+|-+.-.... ..+..+..-|..+
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~---~k~trf~RkdlwK 133 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGC---AKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhc---ccchhhhhhhhhh
Confidence 344444432223455 599999999999999999985 56889999999999988765322211 2456666667665
Q ss_pred H
Q 016578 226 F 226 (387)
Q Consensus 226 ~ 226 (387)
+
T Consensus 134 ~ 134 (199)
T KOG4058|consen 134 V 134 (199)
T ss_pred c
Confidence 4
No 295
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.89 E-value=0.46 Score=47.21 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCee
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fD 236 (387)
...++||+.|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....|..+.+.+. ....+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 4567999998653 44556677776666799999999988888764 21 111111223444434333 223699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|| |... . .+.++...+.|+++|.+++-.
T Consensus 248 ~vi-d~~g---~------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 248 VVI-DAVG---R------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EEE-ECCC---C------HHHHHHHHHHhccCCEEEEEC
Confidence 887 3321 1 135677788999999988643
No 296
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.87 E-value=0.48 Score=46.39 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=61.7
Q ss_pred CEEEEEcC--cccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 162 KTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 162 ~~VL~IG~--G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
++||+.|+ |-|..+..++++.+..+|++++-+++-.+.+++.+.. +.-+.....|..+.+++...+.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa------~~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF------DAAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC------cEEEECCCCCHHHHHHHHCCCCceEEE
Confidence 79999984 6777888888886544799999888877777664431 111111122344444433235699888
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|... . ..++.+.+.|+++|.++..
T Consensus 230 -d~~g---~-------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 -DNVG---G-------EISDTVISQMNENSHIILC 253 (345)
T ss_pred -ECCC---c-------HHHHHHHHHhccCCEEEEE
Confidence 3321 1 1356788899999999864
No 297
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.83 E-value=0.38 Score=45.45 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=67.3
Q ss_pred hHHHHHHHhccccCCCCCCEEEEEcCcccHHHHH--HHhcCCCceEEEE--eCCHHHHHHHHhhcccccCCCCCCCEEEE
Q 016578 144 CAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLRE--ISRHDSVELIDIC--EIDKMVIDVSKKYFPELAVGFEDPRVRLH 219 (387)
Q Consensus 144 ~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~e--l~k~~~~~~Vt~V--EiD~~vi~~ar~~~~~~~~~~~d~rv~v~ 219 (387)
.+|.+-.-++|.....+.++||+||||.=+.-+. +++.. .+|++| |+++++.++++ ..+++++
T Consensus 8 ~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~-----------~~~i~~~ 74 (223)
T PRK05562 8 DIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKK-----------YGNLKLI 74 (223)
T ss_pred HHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHh-----------CCCEEEE
Confidence 4566667777877667788999999997665433 34444 566666 88888776543 2467777
Q ss_pred EcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 220 IGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 220 ~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
..+...- +. ..+++||+...| ++.-+.+++..+..|+++..++.
T Consensus 75 ~r~~~~~--dl--~g~~LViaATdD----------~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 75 KGNYDKE--FI--KDKHLIVIATDD----------EKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred eCCCChH--Hh--CCCcEEEECCCC----------HHHHHHHHHHHHHcCCeEEEcCC
Confidence 6543211 11 357888875543 23455666666666888765544
No 298
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.82 E-value=0.098 Score=53.63 Aligned_cols=101 Identities=18% Similarity=0.246 Sum_probs=63.2
Q ss_pred EEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcC
Q 016578 163 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDS 242 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~ 242 (387)
-||+||.|+|.+...+++.. ...|+++|.-.-|.+.|++-..+. ++.| +++++..--.+. +.-+..+-|+++...
T Consensus 69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kn--g~Sd-kI~vInkrStev-~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKN--GMSD-KINVINKRSTEV-KVGGSSRADIAVRED 143 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcC--CCcc-ceeeecccccee-eecCcchhhhhhHhh
Confidence 68999999999999988886 568999999999999999976543 4444 777775432221 110112456655444
Q ss_pred CCCCCCccccchHHHHHHHHHhccCCCe
Q 016578 243 SDPVGPAQELVEKPFFDTIAKALRPGGV 270 (387)
Q Consensus 243 ~dp~~~~~~L~~~ef~~~l~~~LkpgGv 270 (387)
+|..-..+. ...-|+.+.++|...|.
T Consensus 144 fdtEligeG--alps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 144 FDTELIGEG--ALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hhhhhhccc--cchhHHHHHHHhcccCC
Confidence 442111110 01247777777655543
No 299
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.62 E-value=0.66 Score=43.00 Aligned_cols=99 Identities=21% Similarity=0.324 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+.++||+.|+|+ |..+..+++..+ .+|++++.+++..+.+++.-.. .-+.....+...-+.....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCE
Confidence 4567999999885 666677777654 6899999998888877654211 011111112211111122457999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+...... ..++.+.+.|+++|.++...
T Consensus 205 vi~~~~~~----------~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP----------ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH----------HHHHHHHHhcccCCEEEEEc
Confidence 98543311 35777888999999998644
No 300
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.44 E-value=0.91 Score=43.51 Aligned_cols=97 Identities=15% Similarity=0.080 Sum_probs=59.4
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCeeE
Q 016578 160 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDA 237 (387)
Q Consensus 160 ~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fDv 237 (387)
..++||++|+| -|..+..+++..+..+|+++|.+++-.+.+++.=... .++ . .+..+.+.+. ....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~--~i~-~------~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA--LAE-P------EVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE--ecC-c------hhhHHHHHHHhCCCCCCE
Confidence 45699999865 3445566777766666999999999888888742110 011 0 1111222222 2346998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
||--.. ....++.+.+.|+++|.++...
T Consensus 191 vid~~G----------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSG----------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEECCC----------ChHHHHHHHHHhcCCCEEEEec
Confidence 873221 1235778889999999998644
No 301
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.34 E-value=0.19 Score=45.25 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=64.3
Q ss_pred EEEcCcccHHHHHHHhcCC-CceEEEEeCCHHHHHHHHhhcccc---cCCCCCCCEEEE-EcchhhHHhhC--CCCCeeE
Q 016578 165 LVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPEL---AVGFEDPRVRLH-IGDAVEFLRQV--PRGKYDA 237 (387)
Q Consensus 165 L~IG~G~G~~~~el~k~~~-~~~Vt~VEiD~~vi~~ar~~~~~~---~~~~~d~rv~v~-~gD~~~~l~~~--~~~~fDv 237 (387)
|.||=|+-..+..++++.. ..++++.-.|.. -++.++| +.. -..+....++++ --|+.+.-+.. ..++||.
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~-~~l~~kY-~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDr 78 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSE-EELLQKY-PDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDR 78 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCch-HHHHHhc-ccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCE
Confidence 6789999999999998754 567777666654 2222222 210 001233444443 34554432222 3568999
Q ss_pred EEEcCCCCCCC---------ccccchHHHHHHHHHhccCCCeEEe
Q 016578 238 IIVDSSDPVGP---------AQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 238 II~D~~dp~~~---------~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
||.+.+..... .....-..||+.+.+.|+++|.+.+
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhV 123 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHV 123 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 99887764311 0111235799999999999996653
No 302
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.14 E-value=0.083 Score=52.63 Aligned_cols=112 Identities=19% Similarity=0.150 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHH-------HhhcccccCCCCCCCEEEEEcchhhHHhhCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVS-------KKYFPELAVGFEDPRVRLHIGDAVEFLRQVP 231 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~a-------r~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~ 231 (387)
.+.+-|+|--.|+|+++..+++.+ .-|.+.|||-.++... +.+|... +..+--+.++.+|.-.-.-..
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQY--g~~~~fldvl~~D~sn~~~rs- 281 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQY--GSSSQFLDVLTADFSNPPLRS- 281 (421)
T ss_pred CCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHh--CCcchhhheeeecccCcchhh-
Confidence 566789999999999998888775 6899999999998843 3345444 223445678888865432111
Q ss_pred CCCeeEEEEcCCCCCCCc------------------------cccch-----HHHHHHHHHhccCCCeEEecc
Q 016578 232 RGKYDAIIVDSSDPVGPA------------------------QELVE-----KPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 232 ~~~fDvII~D~~dp~~~~------------------------~~L~~-----~ef~~~l~~~LkpgGvlv~q~ 275 (387)
...||.||+|++..+... ...|. -+.+.-..++|..||.++.+.
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 458999999987643110 00111 235666788999999998653
No 303
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.12 E-value=1 Score=44.12 Aligned_cols=99 Identities=23% Similarity=0.171 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh-CCCCCee
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~-~~~~~fD 236 (387)
...++||++|+| -|..+..+++..+..+|++++.+++-.+.+++.-. +.-+.....+ .+-+.+ .....+|
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga-------~~~i~~~~~~-~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA-------DFVINSGQDD-VQEIRELTSGAGAD 233 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-------CEEEcCCcch-HHHHHHHhCCCCCC
Confidence 346799999764 34444556777665559999999998888866421 1111111122 222222 2234699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+||-... ....+....+.|+++|.+++..
T Consensus 234 ~vid~~g----------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 234 VAIECSG----------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EEEECCC----------CHHHHHHHHHHhhcCCEEEEEc
Confidence 8874322 1235567788999999998644
No 304
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.96 E-value=2.1 Score=41.45 Aligned_cols=146 Identities=19% Similarity=0.251 Sum_probs=86.6
Q ss_pred EEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh-CCCCCeeEEEEc
Q 016578 163 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYDAIIVD 241 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~-~~~~~fDvII~D 241 (387)
+|+++-+|.|++..-+.+.+ .+-+.++|+|+..++.-+.+++ .+..+|..+.-.. .+. ..|+|+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccc-cceEEEec
Confidence 68999999999998887765 6788999999999999988873 6778888765422 222 59999966
Q ss_pred CCC-CCCCc----------cccchHHHHHHHHHhccCCCeEEecccccchh--hhHHHHHHHHHHHHcCCCcceEEEEee
Q 016578 242 SSD-PVGPA----------QELVEKPFFDTIAKALRPGGVLCNMAESMWLH--THLIEDMISICRETFKGSVHYAWASVP 308 (387)
Q Consensus 242 ~~d-p~~~~----------~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~--~~~~~~~~~~l~~~F~~~v~~~~~~iP 308 (387)
++- +...+ ..|+. ++++.+ +.++|.-+++=++...... ...++.+.+.+.+. ...+.+.....-
T Consensus 69 pPCQ~fS~ag~~~~~~d~r~~L~~-~~~~~v-~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~l-GY~v~~~vlna~ 145 (335)
T PF00145_consen 69 PPCQGFSIAGKRKGFDDPRNSLFF-EFLRIV-KELKPKYFLLENVPGLLSSKNGEVFKEILEELEEL-GYNVQWRVLNAA 145 (335)
T ss_dssp ---TTTSTTSTHHCCCCHTTSHHH-HHHHHH-HHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHT-TEEEEEEEEEGG
T ss_pred cCCceEeccccccccccccchhhH-HHHHHH-hhccceEEEecccceeecccccccccccccccccc-ceeehhccccHh
Confidence 442 11111 12322 344444 5678988777444333222 23466666666553 212333333333
Q ss_pred ccCCCc---EEEEEEecCC
Q 016578 309 TYPSGI---IGFLICSTEG 324 (387)
Q Consensus 309 typ~g~---~gf~~ask~~ 324 (387)
.|..-| --|++|.++.
T Consensus 146 ~yGvPQ~R~R~fivg~r~~ 164 (335)
T PF00145_consen 146 DYGVPQNRERVFIVGIRKD 164 (335)
T ss_dssp GGTSSBE-EEEEEEEEEGG
T ss_pred hCCCCCceeeEEEEEECCC
Confidence 343223 3788888763
No 305
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=92.85 E-value=0.22 Score=46.72 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=54.3
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH-HhhCCCCCeeEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF-LRQVPRGKYDAII 239 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~-l~~~~~~~fDvII 239 (387)
+-++||||+=+...... +. +.-.|+.||+++. +| .+...|..+. +...+.++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s--~~-~~fdvt~IDLns~-----------------~~--~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TS-GWFDVTRIDLNSQ-----------------HP--GILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCccc--cc-CceeeEEeecCCC-----------------CC--CceeeccccCCCCCCcccceeEEE
Confidence 35999999864443322 22 2346999998763 12 3455665543 2222457899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCe
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGV 270 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGv 270 (387)
+.+--...|.. .-.-+.++.+.+.|+|+|.
T Consensus 110 ~SLVLNfVP~p-~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 110 LSLVLNFVPDP-KQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEeeCCCH-HHHHHHHHHHHHHhCCCCc
Confidence 77544333311 1134689999999999999
No 306
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=92.83 E-value=0.096 Score=49.29 Aligned_cols=60 Identities=30% Similarity=0.451 Sum_probs=47.9
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
..-|.+||.|.|+++|.++... .++..+||+|+..+.-.+-. .+. .+.++.++++|+..|
T Consensus 51 ~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L-~EA----a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQML-SEA----APGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHH-hhc----CCcceEEecccccee
Confidence 4469999999999999999874 68999999999988766543 222 245899999998765
No 307
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.79 E-value=1.3 Score=42.90 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
....+||+.|+| .|..+.++++..+ .+|++++.+++..+.++++ .. +.-+.....+..+.+.....+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GA------DEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CC------CEEEcCCCcCHHHHHHHhcCCCceE
Confidence 456799998765 4677777888754 4699999999988888663 11 1011111112222222223457998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+-... ..+.++.+.+.|+++|.++...
T Consensus 236 vid~~g----------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFVG----------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECCC----------CHHHHHHHHHHhhcCCEEEEEC
Confidence 773221 1236788899999999998643
No 308
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.78 E-value=0.84 Score=48.26 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=60.9
Q ss_pred CCCEEEEEcCccc-HHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCC--------CCEEEEEcchhhH----
Q 016578 160 SPKTVLVVGGGDG-GVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED--------PRVRLHIGDAVEF---- 226 (387)
Q Consensus 160 ~p~~VL~IG~G~G-~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d--------~rv~v~~gD~~~~---- 226 (387)
.+.+||++|+|.= ..+..+++..+ ..|+++|.+++..+.+++. +.....++. ...+....|..+.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 4689999999854 55555666544 4699999999998888873 211000000 0011111121110
Q ss_pred HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEE
Q 016578 227 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 272 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv 272 (387)
+.+. -..+|+||....-|..++..|.+++ +.+.+|||++++
T Consensus 241 ~~e~-~~~~DIVI~TalipG~~aP~Lit~e----mv~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQ-AKEVDIIITTALIPGKPAPKLITEE----MVDSMKAGSVIV 281 (511)
T ss_pred HHHH-hCCCCEEEECcccCCCCCCeeehHH----HHhhCCCCCEEE
Confidence 1111 2469999876544444555565554 466788888876
No 309
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.67 E-value=0.49 Score=45.42 Aligned_cols=119 Identities=16% Similarity=0.188 Sum_probs=69.6
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHH---HhcC--CCceEEEEeCC--------------------------HH
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREI---SRHD--SVELIDICEID--------------------------KM 195 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el---~k~~--~~~~Vt~VEiD--------------------------~~ 195 (387)
++++..+.. ..-|..|+++|+--|+.+..+ ++.. +..+|.+.|-= ..
T Consensus 63 ~~~~~~v~~--~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~ 140 (248)
T PF05711_consen 63 YQAVEQVLA--EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAV 140 (248)
T ss_dssp HHHHHHCCH--TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTH
T ss_pred HHHHHHHHh--cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhccccccc
Confidence 444444422 234779999999888766443 3321 34577776621 11
Q ss_pred HHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 196 VIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 196 vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
-.+..+++|... ++.+++++++.|+..+-+...+.+++-++-+|.-- ..+ +.+.++.++..|.|||++++.-
T Consensus 141 s~e~V~~n~~~~--gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-Yes-----T~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 141 SLEEVRENFARY--GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-YES-----TKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp HHHHHHHCCCCT--TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S-HHH-----HHHHHHHHGGGEEEEEEEEESS
T ss_pred CHHHHHHHHHHc--CCCcccEEEECCcchhhhccCCCccEEEEEEeccc-hHH-----HHHHHHHHHhhcCCCeEEEEeC
Confidence 344555555544 44567999999999888876666678888887531 111 6678999999999999999743
No 310
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.63 E-value=0.73 Score=37.87 Aligned_cols=94 Identities=21% Similarity=0.281 Sum_probs=59.8
Q ss_pred EEEEcCcccHHHHHHHhc--CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH--HhhCCCCCeeEEE
Q 016578 164 VLVVGGGDGGVLREISRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--LRQVPRGKYDAII 239 (387)
Q Consensus 164 VL~IG~G~G~~~~el~k~--~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~--l~~~~~~~fDvII 239 (387)
|+++|+| .+++.+++. ....+|+++|.|++.++.+++.. +.++.+|+.+. +++..-++.|.|+
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----------~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----------VEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----------SEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----------cccccccchhhhHHhhcCccccCEEE
Confidence 5777776 455555442 12358999999999988887642 56888998653 5554446799999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
+...+.. ..-..-...+.+.|...++....+
T Consensus 68 ~~~~~d~-------~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 68 ILTDDDE-------ENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp EESSSHH-------HHHHHHHHHHHHTTTSEEEEEESS
T ss_pred EccCCHH-------HHHHHHHHHHHHCCCCeEEEEECC
Confidence 8765421 111334455667888888876543
No 311
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.46 E-value=0.18 Score=46.09 Aligned_cols=53 Identities=25% Similarity=0.167 Sum_probs=39.9
Q ss_pred HHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHh
Q 016578 148 EMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKK 202 (387)
Q Consensus 148 eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~ 202 (387)
+++..+..+...+...|||.-+|+|.++..+.+.. .+..++|++++.+++|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 44444444445667799999999999999988875 689999999999999975
No 312
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.45 E-value=0.76 Score=45.70 Aligned_cols=98 Identities=24% Similarity=0.328 Sum_probs=64.9
Q ss_pred CCCCEEEEEc--CcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCC-CCe
Q 016578 159 PSPKTVLVVG--GGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR-GKY 235 (387)
Q Consensus 159 ~~p~~VL~IG--~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~-~~f 235 (387)
...++||+.| +|-|.++..++|..+. .++++--+++-.+.+++.-. |.-+.+...|..+-+++... ..+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA-------d~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA-------DHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC-------CEEEcCCcccHHHHHHHHcCCCCc
Confidence 4478999998 5678888999998755 55555555655557777643 22334445555555554433 369
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+|+-. .+ .+.+....+.|+++|.+++-.
T Consensus 213 Dvv~D~----vG-------~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 213 DVVLDT----VG-------GDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred eEEEEC----CC-------HHHHHHHHHHhccCCEEEEEe
Confidence 988832 22 246778899999999998643
No 313
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=92.20 E-value=2.2 Score=40.95 Aligned_cols=117 Identities=16% Similarity=0.226 Sum_probs=83.3
Q ss_pred EEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC--CCCCeeEEEEcC
Q 016578 165 LVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDAIIVDS 242 (387)
Q Consensus 165 L~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~--~~~~fDvII~D~ 242 (387)
|..=+|+=.+++.+++-. .++..+|+-|.=..+.+++|. .+.++++..+|++.-++.. +.++=-+|++|.
T Consensus 93 l~~YpGSP~lA~~llR~q--DRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLREQ--DRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcchh--ceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence 777789999999998853 699999999999999999886 3789999999999887654 345677999998
Q ss_pred CCCCCCccccchHHHHHHHHHhcc--CCCeEEecccccchhhhHHHHHHHHHHHH
Q 016578 243 SDPVGPAQELVEKPFFDTIAKALR--PGGVLCNMAESMWLHTHLIEDMISICRET 295 (387)
Q Consensus 243 ~dp~~~~~~L~~~ef~~~l~~~Lk--pgGvlv~q~~s~~~~~~~~~~~~~~l~~~ 295 (387)
+...... |. ...+.+.+.++ ++|+.+++- |......++++.+.++..
T Consensus 165 PfE~~~e---Y~-rvv~~l~~~~kRf~~g~yaiWY--Pik~r~~~~~f~~~L~~~ 213 (279)
T COG2961 165 PFELKDE---YQ-RVVEALAEAYKRFATGTYAIWY--PIKDRRQIRRFLRALEAL 213 (279)
T ss_pred CcccccH---HH-HHHHHHHHHHHhhcCceEEEEE--eecchHHHHHHHHHHhhc
Confidence 7533221 11 12333333343 678888643 344556677777777765
No 314
>PLN02740 Alcohol dehydrogenase-like
Probab=92.06 E-value=1.2 Score=44.70 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE--cchhhHHhhCCCCCe
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI--GDAVEFLRQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~--gD~~~~l~~~~~~~f 235 (387)
...++||++|+| -|..+..+++..+..+|+++|.+++-.+.+++. .. +.-+.... .|..+.+.+...+.+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI------TDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC------cEEEecccccchHHHHHHHHhCCCC
Confidence 456799999865 344555667776666799999999999998764 21 11111111 123333433322369
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCC-CeEEecc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~Lkpg-Gvlv~q~ 275 (387)
|+||--.. ..+.++...+.++++ |.+++-.
T Consensus 270 dvvid~~G----------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 270 DYSFECAG----------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CEEEECCC----------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 98874222 113577777888896 9887643
No 315
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.96 E-value=1.5 Score=43.18 Aligned_cols=100 Identities=26% Similarity=0.323 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCe
Q 016578 158 IPSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKY 235 (387)
Q Consensus 158 ~~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~f 235 (387)
.+..++||+.|+| .|..+.++++..+...|++++.+++-.+.++++ .. +.-+.....|..+.+... ....+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GA------TDIVDYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------ceEecCCCCCHHHHHHHHhCCCCC
Confidence 3556799999765 355556677877666799999999888888763 21 111111112322223222 23469
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|+|+-... ..+.+..+.++|+++|.++..
T Consensus 237 d~vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 237 DAVIIAGG----------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred cEEEECCC----------CHHHHHHHHHHhhcCCEEEEe
Confidence 98874322 123678889999999998853
No 316
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.92 E-value=0.52 Score=45.73 Aligned_cols=102 Identities=14% Similarity=0.230 Sum_probs=61.3
Q ss_pred CEEEEEcCcc--cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccccc-----CC-CCC-------CCEEEEEcchhhH
Q 016578 162 KTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-----VG-FED-------PRVRLHIGDAVEF 226 (387)
Q Consensus 162 ~~VL~IG~G~--G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~-----~~-~~d-------~rv~v~~gD~~~~ 226 (387)
++|.+||+|. +.++..+++.. .+|+++|+|++.++.++++..... .+ ... .++++ ..|..+-
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 5799999984 34445555553 589999999999998876532210 00 000 12332 2232222
Q ss_pred HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccc
Q 016578 227 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
+ ..-|+||...++... ....+|+.+.+.++++.+++++..
T Consensus 79 ~-----~~aD~Vi~avpe~~~-----~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 79 V-----ADADLVIEAVPEKLE-----LKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred h-----cCCCEEEEeccCCHH-----HHHHHHHHHHhhCCCCcEEEEcCC
Confidence 2 357999976654211 134678888888999888876553
No 317
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.80 E-value=0.61 Score=47.85 Aligned_cols=102 Identities=21% Similarity=0.164 Sum_probs=72.3
Q ss_pred EEEEecCceeEEEEc-CeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHH
Q 016578 119 LVFESLAYGKVLVLD-GIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVI 197 (387)
Q Consensus 119 ~v~es~~~G~~L~lD-G~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi 197 (387)
.++|.+..|-.+-+| |.+-...+-. .-||-++. + ...+.-|.|+-||-|-++.-+++.. .+|++-|++++++
T Consensus 212 ~vtevre~~~~Fk~DfskVYWnsRL~-~Eherlsg--~--fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesi 284 (495)
T KOG2078|consen 212 LVTEVREGGERFKFDFSKVYWNSRLS-HEHERLSG--L--FKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESI 284 (495)
T ss_pred eEEEEecCCeeEEEecceEEeeccch-hHHHHHhh--c--cCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHH
Confidence 455555555555555 3333333332 12555554 2 2456688999999999999998875 7999999999999
Q ss_pred HHHHhhcccccCCCCCCCEEEEEcchhhHHhh
Q 016578 198 DVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ 229 (387)
Q Consensus 198 ~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~ 229 (387)
+..+.+++.... +..+++++..||.+|+++
T Consensus 285 k~Lk~ni~lNkv--~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 285 KWLKANIKLNKV--DPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred HHHHHhcccccc--chhheeeecccHHHHhhc
Confidence 999999876532 444599999999999964
No 318
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=91.71 E-value=1.5 Score=42.73 Aligned_cols=99 Identities=23% Similarity=0.275 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCee
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fD 236 (387)
++.++||+.|+| .|..+..+++..+...|++++.++...+.+++.-. +.-+.....+..+.+... ..+.+|
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~-------~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA-------TDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC-------cEEEcCCcchHHHHHHHHcCCCCCc
Confidence 456789997654 35566677777654578888888888877775411 111122222333334332 235699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+|+- ... ..+.++.+.+.|+++|.++..
T Consensus 239 ~vld-~~g---------~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIE-AVG---------FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEE-ccC---------CHHHHHHHHHHhhcCCEEEEE
Confidence 8873 221 113678888999999998853
No 319
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=91.71 E-value=0.24 Score=47.61 Aligned_cols=111 Identities=21% Similarity=0.137 Sum_probs=78.3
Q ss_pred CEEEEEcCcccHHHHHHHhcC------------CCceEEEEeCCHHHHHHHH-------------hhcccccC-------
Q 016578 162 KTVLVVGGGDGGVLREISRHD------------SVELIDICEIDKMVIDVSK-------------KYFPELAV------- 209 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~------------~~~~Vt~VEiD~~vi~~ar-------------~~~~~~~~------- 209 (387)
-.|+++|-|+|...+.+.+.. ....++.+|.+|.....++ +..+....
T Consensus 60 ~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~r 139 (252)
T COG4121 60 LQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCAA 139 (252)
T ss_pred eeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhHH
Confidence 368889999998887765432 1235677887765433222 11111100
Q ss_pred -CC-CCCCEEEEEcchhhHHhhCCCC---CeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 210 -GF-EDPRVRLHIGDAVEFLRQVPRG---KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 210 -~~-~d~rv~v~~gD~~~~l~~~~~~---~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
.+ ..-.+.+++||+.+.+... +. ++|+.+.|.+.|.-.+ .+++.+++..+++..++||.+++-
T Consensus 140 ~~~~g~~~l~l~~gd~~~~~p~~-~~~~~~~dAwflDgFsP~kNP-~mW~~e~l~~~a~~~~~~~~l~t~ 207 (252)
T COG4121 140 AVRHGLLLLGLVIGDAGDGIPPV-PRRRPGTDAWFLDGFRPVKNP-EMWEDELLNLMARIPYRDPTLATF 207 (252)
T ss_pred hhhcchheeeeeeeehhhcCCcc-cccccCccEEecCCccccCCh-hhccHHHHHHHHhhcCCCCceech
Confidence 11 2346789999999988765 33 7999999999988766 789999999999999999999963
No 320
>PRK11524 putative methyltransferase; Provisional
Probab=91.66 E-value=0.33 Score=47.28 Aligned_cols=57 Identities=14% Similarity=0.027 Sum_probs=46.8
Q ss_pred HHHHHhccccCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcc
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFP 205 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~ 205 (387)
-+++..+..+.......|||--+|+|.++..+.+.. .+..++|+|++.++.|++.+.
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHH
Confidence 355555555445667799999999999999888875 789999999999999999875
No 321
>PLN02827 Alcohol dehydrogenase-like
Probab=91.63 E-value=1.3 Score=44.63 Aligned_cols=100 Identities=12% Similarity=0.132 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE--cchhhHHhhCCCCCe
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI--GDAVEFLRQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~--gD~~~~l~~~~~~~f 235 (387)
...++||+.|+| -|..+.++++..+...|++++.+++-.+.+++. .. +.-+.... .|..+.+++...+.+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GV------TDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC------cEEEcccccchHHHHHHHHHhCCCC
Confidence 456799999864 344555677776666799999999888888664 21 10111111 133344443323369
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCC-CeEEecc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~Lkpg-Gvlv~q~ 275 (387)
|+||- ... . ...+....+.|+++ |.+++..
T Consensus 265 d~vid-~~G---~------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 265 DYSFE-CVG---D------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CEEEE-CCC---C------hHHHHHHHHhhccCCCEEEEEC
Confidence 98873 321 1 12467788889998 9988643
No 322
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.51 E-value=1.6 Score=43.12 Aligned_cols=100 Identities=18% Similarity=0.302 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE---cchhhHHhhC-CCC
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI---GDAVEFLRQV-PRG 233 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~---gD~~~~l~~~-~~~ 233 (387)
...++||++|+|. |..+..+++..+. +|++++.+++-.+.+++. .. +.-+.... .|..+.+++. ...
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF-GA------DLTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh-CC------ceEecCccccHHHHHHHHHhhcccC
Confidence 4567999999864 5566677777654 799999999998888763 21 10111111 1233333322 122
Q ss_pred CeeE---EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 234 KYDA---IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 234 ~fDv---II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.+|. +++|..- . ...++.+.+.|+++|.++...
T Consensus 237 g~d~~~d~v~d~~g---~------~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 237 GLRSTGWKIFECSG---S------KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCcCEEEECCC---C------hHHHHHHHHHHhcCCeEEEEC
Confidence 4551 3444432 1 235677788999999998654
No 323
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=91.45 E-value=1.6 Score=42.12 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCCCEEEEEc--CcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 159 PSPKTVLVVG--GGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG--~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
.+.++||+.| +|-|..+..+++..+. +|+++.-+++-.+.++++ .. +.-+.....|..+.+.....+.+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~-Ga------~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKEL-GF------DAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc-CC------CEEEeCCCccHHHHHHHHCCCCcE
Confidence 4567999998 4667777888887654 789999888888888773 21 111111122333334333235699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+|+ |... . +.++...+.|+++|.++..
T Consensus 214 ~vl-d~~g---~-------~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYF-DNVG---G-------EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEE-ECCC---H-------HHHHHHHHhhccCCEEEEE
Confidence 887 3321 1 3567888999999999864
No 324
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.35 E-value=2.8 Score=38.21 Aligned_cols=137 Identities=16% Similarity=0.183 Sum_probs=66.9
Q ss_pred EEEEEcCcccHHH--HHHHhcCCCceEEEEeCCHHHHHHHHhhcccccC-CC--------CCCCEEEEEcchhhHHhhCC
Q 016578 163 TVLVVGGGDGGVL--REISRHDSVELIDICEIDKMVIDVSKKYFPELAV-GF--------EDPRVRLHIGDAVEFLRQVP 231 (387)
Q Consensus 163 ~VL~IG~G~G~~~--~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~-~~--------~d~rv~v~~gD~~~~l~~~~ 231 (387)
+|-+||.|-=++. ..+++.+ -+|+++|+|++.++..++-...... ++ ...|+.+. .|..+.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 7889998844333 3344443 6999999999999988764221110 10 12344332 3433333
Q ss_pred CCCeeEEEEcCCCCCCC---ccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHH-HHHHcCCCcceEEEEe
Q 016578 232 RGKYDAIIVDSSDPVGP---AQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISI-CRETFKGSVHYAWASV 307 (387)
Q Consensus 232 ~~~fDvII~D~~dp~~~---~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~-l~~~F~~~v~~~~~~i 307 (387)
...|++|+..+.|... ++.-+-....+.+.+.|+++-++++.+.-+-. ..+++... +++.-.....++.++.
T Consensus 75 -~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG---tt~~~~~~ile~~~~~~~~f~la~~ 150 (185)
T PF03721_consen 75 -KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG---TTEELLKPILEKRSGKKEDFHLAYS 150 (185)
T ss_dssp -HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT---HHHHHHHHHHHHHCCTTTCEEEEE-
T ss_pred -hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe---eehHhhhhhhhhhcccccCCeEEEC
Confidence 2478888776654432 23233456788889999998888876654332 22323222 2332221134555666
Q ss_pred ecc
Q 016578 308 PTY 310 (387)
Q Consensus 308 Pty 310 (387)
|.+
T Consensus 151 PEr 153 (185)
T PF03721_consen 151 PER 153 (185)
T ss_dssp ---
T ss_pred CCc
Confidence 665
No 325
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.30 E-value=1.9 Score=42.25 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcch---hhHHhh-CCCC
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA---VEFLRQ-VPRG 233 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~---~~~l~~-~~~~ 233 (387)
.+.++||+.|+|. |..+.++++..+...|+.++-+++-.+.+++. .. +.-+.....+. .+.+.. ....
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA------THTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------cEEeccccccchhHHHHHHHHhCCC
Confidence 5567999987654 66667778876655588998888887777663 21 11111111121 111222 2234
Q ss_pred CeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 234 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 234 ~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.+|+|+-... .....+...+.|+++|.++...
T Consensus 234 ~~d~vld~~g----------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 234 GPDVVIECTG----------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCEEEECCC----------CHHHHHHHHHHhhcCCEEEEEc
Confidence 6998884322 1125778889999999988643
No 326
>PHA01634 hypothetical protein
Probab=91.28 E-value=0.43 Score=41.32 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=53.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
..++|+|||++-|..+...+-.+ .++|+++|.++...+..++++..+.. -|.-+- . + +|-.. =+.||+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~nnI--~DK~v~-~-~---eW~~~--Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYFNI--CDKAVM-K-G---EWNGE--YEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhhee--eeceee-c-c---ccccc--CCCcceEE
Confidence 57899999999999999988764 68999999999999999987764421 111111 0 1 22211 24799999
Q ss_pred EcCCC
Q 016578 240 VDSSD 244 (387)
Q Consensus 240 ~D~~d 244 (387)
+|.-.
T Consensus 98 iDCeG 102 (156)
T PHA01634 98 MDCEG 102 (156)
T ss_pred EEccc
Confidence 98753
No 327
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.14 E-value=1.2 Score=43.41 Aligned_cols=87 Identities=26% Similarity=0.400 Sum_probs=56.2
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..++||++|+| -|..+..+++..+...|.++|.+++-++.++++.. + ++ .+ . ....+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~-----i-~~---------~~---~-~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV-----L-DP---------EK---D-PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc-----c-Ch---------hh---c-cCCCCCEE
Confidence 45689999854 46666778887766678888998877776654310 0 11 00 0 12469987
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
| |+.. ....++.+.+.|+++|.+++-.
T Consensus 205 i-d~~G---------~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 Y-DASG---------DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred E-ECCC---------CHHHHHHHHHhhhcCcEEEEEe
Confidence 7 3331 1135778889999999998643
No 328
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.08 E-value=4 Score=38.31 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=60.0
Q ss_pred HHHHHhccccCCCCCCEEEEEcCccc----HHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcc
Q 016578 147 QEMIAHLPLCSIPSPKTVLVVGGGDG----GVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGD 222 (387)
Q Consensus 147 ~eml~~l~l~~~~~p~~VL~IG~G~G----~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD 222 (387)
.|.+..++. --+.+.++++.++.| .++..++.+....++++|-.|++-....++.+.... +. ..++|+++|
T Consensus 30 aEfISAlAA--G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~--~~-~~vEfvvg~ 104 (218)
T PF07279_consen 30 AEFISALAA--GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG--LS-DVVEFVVGE 104 (218)
T ss_pred HHHHHHHhc--cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc--cc-ccceEEecC
Confidence 455555433 245677888865533 344444444456789999999888888888876542 22 357999998
Q ss_pred h-hhHHhhCCCCCeeEEEEcCC
Q 016578 223 A-VEFLRQVPRGKYDAIIVDSS 243 (387)
Q Consensus 223 ~-~~~l~~~~~~~fDvII~D~~ 243 (387)
. .+.+... ...|.+++|+-
T Consensus 105 ~~e~~~~~~--~~iDF~vVDc~ 124 (218)
T PF07279_consen 105 APEEVMPGL--KGIDFVVVDCK 124 (218)
T ss_pred CHHHHHhhc--cCCCEEEEeCC
Confidence 5 4566554 36999999986
No 329
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.04 E-value=1.7 Score=43.05 Aligned_cols=98 Identities=24% Similarity=0.296 Sum_probs=66.2
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+.+|.+||+|. |..+..++--. ...|+.+|+|.+-++.....|. .|++.+......+-... .++|++
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~iee~v--~~aDlv 235 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNIEEAV--KKADLV 235 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHHHHHh--hhccEE
Confidence 466899999884 44444444433 4799999999888777666552 47888887776654333 479999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEE
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 272 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv 272 (387)
|-..--|-..+..|. .+++.+.++||++++
T Consensus 236 IgaVLIpgakaPkLv----t~e~vk~MkpGsViv 265 (371)
T COG0686 236 IGAVLIPGAKAPKLV----TREMVKQMKPGSVIV 265 (371)
T ss_pred EEEEEecCCCCceeh----hHHHHHhcCCCcEEE
Confidence 954333333344454 446667899999987
No 330
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.03 E-value=2.2 Score=41.48 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=61.7
Q ss_pred CCCCEEEEEc--CcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE-cchhhHHhhCCCCCe
Q 016578 159 PSPKTVLVVG--GGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG--~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~-gD~~~~l~~~~~~~f 235 (387)
...++||+.| +|-|..+..+++..+. +|++++.+++-.+.+++. .. +.-+.... .+..+.++....+.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~l-Ga------~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKL-GF------DVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc-CC------CEEEeccccccHHHHHHHhCCCCe
Confidence 4567999998 4577788888888654 788888888888888663 21 11111111 122333333323469
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+|+ |.. +. +.++...+.|+++|.++...
T Consensus 209 dvv~-d~~---G~-------~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYF-DNV---GG-------EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEE-ECC---CH-------HHHHHHHHHhCcCcEEEEec
Confidence 9887 432 11 24578889999999998643
No 331
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.01 E-value=2.1 Score=42.37 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=57.5
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeC---CHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCe
Q 016578 160 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEI---DKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKY 235 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEi---D~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~f 235 (387)
..++||++|+|. |.++..+++..+. +|++++. ++.-.+.+++.=... +.....|..+ ... .+.+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~--------v~~~~~~~~~-~~~--~~~~ 239 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATY--------VNSSKTPVAE-VKL--VGEF 239 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE--------ecCCccchhh-hhh--cCCC
Confidence 467999998753 5566677787654 7999886 677778877642111 1001112111 111 2469
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+||--.. ....+....+.|+++|.+++..
T Consensus 240 d~vid~~g----------~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIEATG----------VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CEEEECcC----------CHHHHHHHHHHccCCcEEEEEe
Confidence 98774332 1136778889999999988643
No 332
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.89 E-value=0.38 Score=43.02 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=56.3
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccC-CCCC--CCEEEEEcchhhH---------
Q 016578 160 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAV-GFED--PRVRLHIGDAVEF--------- 226 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~-~~~d--~rv~v~~gD~~~~--------- 226 (387)
+|.+|+++|.|. |.-+.++++..+ .+++..|..++..+..+......-. .+.+ .+-. -|-.+|
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 94 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYES 94 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhHH
Confidence 578999999984 555566666554 5899999999988877765432210 0000 0000 111111
Q ss_pred -HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEE
Q 016578 227 -LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 272 (387)
Q Consensus 227 -l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv 272 (387)
+.+. -..+|+||+....+......|++++..+ .|+|+-+++
T Consensus 95 ~f~~~-i~~~d~vI~~~~~~~~~~P~lvt~~~~~----~m~~gsvIv 136 (168)
T PF01262_consen 95 NFAEF-IAPADIVIGNGLYWGKRAPRLVTEEMVK----SMKPGSVIV 136 (168)
T ss_dssp HHHHH-HHH-SEEEEHHHBTTSS---SBEHHHHH----TSSTTEEEE
T ss_pred HHHHH-HhhCcEEeeecccCCCCCCEEEEhHHhh----ccCCCceEE
Confidence 1111 1358999987655555566788876544 566766666
No 333
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=90.88 E-value=0.41 Score=44.34 Aligned_cols=114 Identities=18% Similarity=0.075 Sum_probs=63.8
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhcC-CCceEEEEeCCHHHHHHHHhhcccccCCC---CCCCEEEEEcchhhHHhhCCC
Q 016578 157 SIPSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGF---EDPRVRLHIGDAVEFLRQVPR 232 (387)
Q Consensus 157 ~~~~p~~VL~IG~G~G~~~~el~k~~-~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~---~d~rv~v~~gD~~~~l~~~~~ 232 (387)
..+....|+|+=.|.|..++-++..- +...|+..-- .++...+..+-+.+.-.. --.+++++-.+...+. ..
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p-~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~---~p 120 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVP-AELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG---AP 120 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecc-hhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---CC
Confidence 34667799999999999999998863 2335554432 222222222211110000 0123444444443332 24
Q ss_pred CCeeEEEEcCCCCCCCc---cccchHHHHHHHHHhccCCCeEEec
Q 016578 233 GKYDAIIVDSSDPVGPA---QELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 233 ~~fDvII~D~~dp~~~~---~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+..|+++..+.++.... ..-+...++..+.++|||||++.+.
T Consensus 121 q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 56777776555433211 1123456899999999999999864
No 334
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.83 E-value=3.3 Score=41.21 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=76.6
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCC-CeeEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG-KYDAII 239 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~-~fDvII 239 (387)
.-+++++-+|.|++..-+...+ .+-+.++|||+..++.-+.+++. -.++..|..++..+.-.. .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence 3489999999999887777664 67788999999999999998862 345667777654332122 789999
Q ss_pred EcCCCC-C---C-------CccccchHHHHHHHHHhccCCCeEEecccccchh-hhHHHHHHHHHHHH
Q 016578 240 VDSSDP-V---G-------PAQELVEKPFFDTIAKALRPGGVLCNMAESMWLH-THLIEDMISICRET 295 (387)
Q Consensus 240 ~D~~dp-~---~-------~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~-~~~~~~~~~~l~~~ 295 (387)
-.++-. . + +-..|+ .+ |..+...++|.-.++=++...+.+ ...++.+.+.|++.
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L~-~~-~~r~I~~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSLF-LE-FIRLIEQLRPKFFVLENVKGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred eCCCCcchhhcCcccCCcCccceee-HH-HHHHHHhhCCCEEEEecCchHHhcCchHHHHHHHHHHHc
Confidence 654421 1 1 111232 23 445566788854444333333322 23566666666654
No 335
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.77 E-value=2.1 Score=42.61 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=62.2
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEc-chhhHHhhCCCCCe
Q 016578 159 PSPKTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG-DAVEFLRQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~--G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~g-D~~~~l~~~~~~~f 235 (387)
...++||+.|+ |-|..+..+++..+ .+|++++.+++-.+.+++.+.. +.-+..... |..+.+.....+.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGF------DEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCC------CEEEECCCcccHHHHHHHHCCCCc
Confidence 45679999986 46777788888865 4788899888888877643321 111111111 33333433323469
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|+|+ |... . ..+..+.+.|+++|.+++.
T Consensus 230 D~v~-d~vG---~-------~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 230 DIYF-DNVG---G-------DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEEE-ECCC---H-------HHHHHHHHHhccCCEEEEE
Confidence 9887 3321 1 2567888999999999864
No 336
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=90.74 E-value=2.7 Score=42.78 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=62.5
Q ss_pred CCCEEEEEc--CcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE----cchhhHHhhC-
Q 016578 160 SPKTVLVVG--GGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI----GDAVEFLRQV- 230 (387)
Q Consensus 160 ~p~~VL~IG--~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~----gD~~~~l~~~- 230 (387)
...+||++| ++-|..+..+++.. +..+|+++|.+++-++.+++.++.... .......++. .|..+.+.+.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHh
Confidence 346999997 45677777788874 235899999999999999886432100 0000111121 2333434332
Q ss_pred CCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 231 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 231 ~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
....+|+||..... ...++...+.|+++|.+++
T Consensus 254 ~g~g~D~vid~~g~----------~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 254 GGQGFDDVFVFVPV----------PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCCCCEEEEcCCC----------HHHHHHHHHHhccCCeEEE
Confidence 23469988864321 1357788889998886654
No 337
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=90.74 E-value=0.25 Score=43.69 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=53.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC--CCCCeeE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDA 237 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~--~~~~fDv 237 (387)
-+.-||++|.|+|.+=-.+-...+..+|.+.|-.- .. + |.. ..+.-.++.||+++.+... ...+.-+
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l---~~---h-p~~----~P~~~~~ilGdi~~tl~~~~~~g~~a~l 96 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRAL---AC---H-PSS----TPPEEDLILGDIRETLPALARFGAGAAL 96 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS-----S-----GGG-------GGGEEES-HHHHHHHHHHH-S-EEE
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeec---cc---C-CCC----CCchHheeeccHHHHhHHHHhcCCceEE
Confidence 35689999999999998888888889999998521 11 1 111 1234568999999887652 1234445
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
|-.|.-......+.-+..-.=..+..+|.|||+++.
T Consensus 97 aHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 97 AHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp EEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 555653322111111122233466778999999985
No 338
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=90.64 E-value=2.4 Score=41.00 Aligned_cols=150 Identities=21% Similarity=0.259 Sum_probs=68.8
Q ss_pred HHHHHHHhccc--cCCCCCCEEEEEcCccc--H-HHHHHHhc--CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEE
Q 016578 145 AYQEMIAHLPL--CSIPSPKTVLVVGGGDG--G-VLREISRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVR 217 (387)
Q Consensus 145 ~Y~eml~~l~l--~~~~~p~~VL~IG~G~G--~-~~~el~k~--~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~ 217 (387)
-|.++-.++.- +..|...+||-+|.|+- . -+-.++|+ +...-++-.||.+-+ .|.. .
T Consensus 44 KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------SDa~-~ 107 (299)
T PF06460_consen 44 KYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------SDAD-Q 107 (299)
T ss_dssp HHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------SSS-E
T ss_pred HHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------cccC-C
Confidence 47777766643 23467779999998742 1 22234443 233344445554322 2323 4
Q ss_pred EEEcchhhHHhhCCCCCeeEEEEcCCCCCCC-------ccccchHHHHHHHHHhccCCCeEEec-ccccchhhhHHHHHH
Q 016578 218 LHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-------AQELVEKPFFDTIAKALRPGGVLCNM-AESMWLHTHLIEDMI 289 (387)
Q Consensus 218 v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~-------~~~L~~~ef~~~l~~~LkpgGvlv~q-~~s~~~~~~~~~~~~ 289 (387)
.+.+|-..+.. +.+||+||.|..|+... ...-|..-+..-+++.|+-||-+++- ++..| +. ++.
T Consensus 108 ~~~~Dc~t~~~---~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw-~~----~Ly 179 (299)
T PF06460_consen 108 SIVGDCRTYMP---PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW-NA----QLY 179 (299)
T ss_dssp EEES-GGGEEE---SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS---H----HHH
T ss_pred ceeccccccCC---CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc-cH----HHH
Confidence 56788887753 56899999999975321 11222233456678899999987754 45555 22 222
Q ss_pred HHHHHHcCCCcceEEEEeeccCCCcEEEEEEec
Q 016578 290 SICRETFKGSVHYAWASVPTYPSGIIGFLICST 322 (387)
Q Consensus 290 ~~l~~~F~~~v~~~~~~iPtyp~g~~gf~~ask 322 (387)
+ +-..|. ....+.+.+-+- ..-+|++|-.
T Consensus 180 e-l~~~F~-~wt~FcT~VNtS--SSEaFLigiN 208 (299)
T PF06460_consen 180 E-LMGYFS-WWTCFCTAVNTS--SSEAFLIGIN 208 (299)
T ss_dssp H-HHTTEE-EEEEEEEGGGTT--SS-EEEEEEE
T ss_pred H-HHhhcc-cEEEEecccCcc--ccceeEEeee
Confidence 2 234454 223333333332 3456777653
No 339
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.63 E-value=1.2 Score=40.46 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=60.3
Q ss_pred EEEEEcCcccHHH--HHHHhcCCCceEEEEeCCHHHHHHHHhhcccc-c-----CCCC-------CCCEEEEEcchhhHH
Q 016578 163 TVLVVGGGDGGVL--REISRHDSVELIDICEIDKMVIDVSKKYFPEL-A-----VGFE-------DPRVRLHIGDAVEFL 227 (387)
Q Consensus 163 ~VL~IG~G~G~~~--~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~-~-----~~~~-------d~rv~v~~gD~~~~l 227 (387)
+|.+||+|.=+.. ..++.+ ..+|+.+|.|++.++.+++++... . ..+. -.++++ ..|.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl---- 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDL---- 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSG----
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCH----
Confidence 5889999864433 334454 369999999999999988876541 1 0111 124442 2332
Q ss_pred hhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 228 RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 228 ~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
.+. . ..|+||=..+. .--..+++|+.+.+.+.|+-+|.+++.+
T Consensus 74 ~~~-~-~adlViEai~E-----~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 74 EEA-V-DADLVIEAIPE-----DLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp GGG-C-TESEEEE-S-S-----SHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred HHH-h-hhheehhhccc-----cHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 222 2 58888854432 1123678999999999999999987644
No 340
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=90.49 E-value=2.1 Score=42.08 Aligned_cols=100 Identities=22% Similarity=0.208 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCee
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fD 236 (387)
...++||+.|+| .|..+..+++..+..+|++++.+++-.+.++++ .. +.-+.....|..+.+.+. ..+.+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA------TIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEECCCccCHHHHHHHHhCCCCCC
Confidence 456799999753 344445566665555899999999888888664 21 111111223333333332 223599
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+||-.... .+.++.+.+.|+++|.++...
T Consensus 244 ~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 244 VSFDCAGV----------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred EEEECCCC----------HHHHHHHHHhccCCCEEEEEc
Confidence 88843321 135778888999999988643
No 341
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=90.47 E-value=0.91 Score=44.97 Aligned_cols=109 Identities=24% Similarity=0.295 Sum_probs=62.7
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhc------------cccc---C--CCCC----------
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYF------------PELA---V--GFED---------- 213 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~------------~~~~---~--~~~d---------- 213 (387)
+.+||+-|||.|.++.+++..+...+. =|.+--|+=.+.--+ |..+ . ..+|
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qG--NEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQG--NEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccc--cHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 458999999999999999987643333 355544433221111 1110 0 0000
Q ss_pred ---------CCEEEEEcchhhHHhhC-CCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 214 ---------PRVRLHIGDAVEFLRQV-PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 214 ---------~rv~v~~gD~~~~l~~~-~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
..+.+-.||..+..... ..+.||+|++..+- ..+.. --++++.+.+.|+|||+.+...
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI--DTa~N--ileYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI--DTAHN--ILEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe--echHH--HHHHHHHHHHhccCCcEEEecc
Confidence 12233446755544332 13469999975331 11111 2469999999999999998654
No 342
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.46 E-value=1.9 Score=42.07 Aligned_cols=96 Identities=21% Similarity=0.390 Sum_probs=59.2
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
+..+||+.|+|. |..+..+++..+..+|++++.++...+.+++.-. +.-+.....+..+.. . ..+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~-------~~vi~~~~~~~~~~~-~-~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA-------DETVNLARDPLAAYA-A-DKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC-------CEEEcCCchhhhhhh-c-cCCCccEE
Confidence 567999988765 6666777887655579999998888887776421 100000001111221 1 12359988
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+-... ....++.+.+.|+++|.++..
T Consensus 236 ld~~g----------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASG----------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCC----------CHHHHHHHHHHHhcCCEEEEE
Confidence 74322 113577889999999999864
No 343
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.24 E-value=5.8 Score=41.82 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=87.0
Q ss_pred CEEEEEcCcccHHHHHHHhcC----CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 162 KTVLVVGGGDGGVLREISRHD----SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~----~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
..|.+.-||+|+.+.+..++. ....+++-|+.+.+..+++.++-.. +.....+.+..+|...-.......+||+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~--~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH--NIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc--CCCccccCcccCCcCCCccccccccCCE
Confidence 589999999999998765421 2356899999999999999874321 1111233333445332100112346999
Q ss_pred EEEcCCCCC----C--Cc----cc-----------cchHHHHHHHHHhccCCCeEEecccccchhh-hHHHHHHHHHHHH
Q 016578 238 IIVDSSDPV----G--PA----QE-----------LVEKPFFDTIAKALRPGGVLCNMAESMWLHT-HLIEDMISICRET 295 (387)
Q Consensus 238 II~D~~dp~----~--~~----~~-----------L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~-~~~~~~~~~l~~~ 295 (387)
|+.+.++.. + ++ .. --...|+..+..+|++||...+......... ..-..++.. -+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~gvl~~~~~e~~ir~~--lL 374 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPGILYREGKEQTIRKY--LV 374 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCCcccCCCchHHHHHH--HH
Confidence 998876422 1 00 00 0134688899999999997554322222111 111112221 23
Q ss_pred cCCCcceEEEEeec---cCCCcEEEEEEecC
Q 016578 296 FKGSVHYAWASVPT---YPSGIIGFLICSTE 323 (387)
Q Consensus 296 F~~~v~~~~~~iPt---yp~g~~gf~~ask~ 323 (387)
|.++ ....+.+|. |+.+.-.|++++++
T Consensus 375 ~~~~-~~avi~Lp~~~f~~t~i~~~I~~~~k 404 (501)
T TIGR00497 375 DQNF-VDAVIQLPSNLFSTTSIATSILVLKK 404 (501)
T ss_pred HcCc-EEEEEeCCccccCCCCCCEEEEEEeC
Confidence 4433 233344443 45566678888775
No 344
>PRK10637 cysG siroheme synthase; Provisional
Probab=90.21 E-value=1.2 Score=46.41 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=55.8
Q ss_pred HhccccCCCCCCEEEEEcCcccHHHHH--HHhcCCCceEEEE--eCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 151 AHLPLCSIPSPKTVLVVGGGDGGVLRE--ISRHDSVELIDIC--EIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 151 ~~l~l~~~~~p~~VL~IG~G~G~~~~e--l~k~~~~~~Vt~V--EiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
.++|++..-+.++||+||||.=+.-+. +++.. .+|++| |+++++-++++ ..+++++..+...
T Consensus 2 ~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~-----------~~~i~~~~~~~~~- 67 (457)
T PRK10637 2 DHLPIFCQLRDRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWAD-----------AGMLTLVEGPFDE- 67 (457)
T ss_pred CeeceEEEcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHh-----------CCCEEEEeCCCCh-
Confidence 456666556788999999997554433 34443 567666 77777655432 2366666644321
Q ss_pred HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccc
Q 016578 227 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
.. -+.+++||+...|+ +.-+.+++..+..|+++..++
T Consensus 68 --~d-l~~~~lv~~at~d~----------~~n~~i~~~a~~~~~lvN~~d 104 (457)
T PRK10637 68 --SL-LDTCWLAIAATDDD----------AVNQRVSEAAEARRIFCNVVD 104 (457)
T ss_pred --HH-hCCCEEEEECCCCH----------HHhHHHHHHHHHcCcEEEECC
Confidence 11 12477887655442 223344444444566665443
No 345
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.14 E-value=2.6 Score=39.10 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCcccHHH--HHHHhcCCCceEEEEeCC--HHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCC
Q 016578 159 PSPKTVLVVGGGDGGVL--REISRHDSVELIDICEID--KMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGK 234 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~--~el~k~~~~~~Vt~VEiD--~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~ 234 (387)
-..++||+||+|.=+.. +.+++.+ .+|++|+.+ ++..++++ ..+++++..+.... .. ..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~-----------~~~i~~~~~~~~~~--dl--~~ 69 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAE-----------QGGITWLARCFDAD--IL--EG 69 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHH-----------cCCEEEEeCCCCHH--Hh--CC
Confidence 35679999999864443 3345543 688888654 44433332 23678877764321 12 36
Q ss_pred eeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 235 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 235 fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
+|+||+...++ +.-+.+....+..|+++..++.
T Consensus 70 ~~lVi~at~d~----------~ln~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 70 AFLVIAATDDE----------ELNRRVAHAARARGVPVNVVDD 102 (205)
T ss_pred cEEEEECCCCH----------HHHHHHHHHHHHcCCEEEECCC
Confidence 99998765542 1233444455566888865443
No 346
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.93 E-value=6.8 Score=41.14 Aligned_cols=138 Identities=14% Similarity=0.142 Sum_probs=74.7
Q ss_pred EEEEEcCcccHHHHH--HHhcCCCceEEEEeCCHHHHHHHHhhcccccC-CCC-------CCCEEEEEcchhhHHhhCCC
Q 016578 163 TVLVVGGGDGGVLRE--ISRHDSVELIDICEIDKMVIDVSKKYFPELAV-GFE-------DPRVRLHIGDAVEFLRQVPR 232 (387)
Q Consensus 163 ~VL~IG~G~G~~~~e--l~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~-~~~-------d~rv~v~~gD~~~~l~~~~~ 232 (387)
+|.+||.|-.++... ++++....+|+++|+|++.++..++-...... +++ ..++++ ..|..+-+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i----- 76 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHV----- 76 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHH-----
Confidence 699999997666655 34443345899999999999988764322110 111 001221 12221111
Q ss_pred CCeeEEEEcCCCCCC--------CccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCCCcceEE
Q 016578 233 GKYDAIIVDSSDPVG--------PAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAW 304 (387)
Q Consensus 233 ~~fDvII~D~~dp~~--------~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~ 304 (387)
..-|+||+..+.|.. .++--+-.+..+.+.+.|+++-++++.+.-+.... +.+...+.+.-+ ...+..
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt---~~~~~~l~~~~~-g~~f~v 152 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA---EAIEKILTHNSK-GINFQI 152 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChH---HHHHHHHHhhCC-CCCeEE
Confidence 247888876554442 12222345567788888888777776654443322 233333333212 134455
Q ss_pred EEeecc
Q 016578 305 ASVPTY 310 (387)
Q Consensus 305 ~~iPty 310 (387)
.+-|.+
T Consensus 153 ~~~PEr 158 (473)
T PLN02353 153 LSNPEF 158 (473)
T ss_pred EECCCc
Confidence 566665
No 347
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.85 E-value=2 Score=46.58 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=59.9
Q ss_pred CCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh--HHhhCCCCCeeE
Q 016578 161 PKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKYDA 237 (387)
Q Consensus 161 p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~--~l~~~~~~~fDv 237 (387)
..+|+++|+|. |....+.++.. ..+++++|.|++.++.++++ ..+++.||+.+ .+++..-++.|+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 35899999884 33232333332 25899999999999988763 34689999865 355444457998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+++...|+... ...-...+.+.|+-.++..+
T Consensus 468 vvv~~~d~~~n-------~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 468 LINAIDDPQTS-------LQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred EEEEeCCHHHH-------HHHHHHHHHhCCCCeEEEEE
Confidence 88766553211 12333444567776655544
No 348
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.76 E-value=7.2 Score=38.56 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=49.3
Q ss_pred EEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCC
Q 016578 164 VLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS 243 (387)
Q Consensus 164 VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~ 243 (387)
|+++-||.|++..-+.+.+ .+-+.++|+|+..++.-+.+++. +++.+|..+.-... -...|+|+...+
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~-~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSD-IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhh-CCCcCEEEecCC
Confidence 5889999999888776654 56677899999999999998762 34557777653221 235899996643
No 349
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.72 E-value=3.4 Score=40.48 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE-cchhhHHhhCCCCCe
Q 016578 159 PSPKTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~--G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~-gD~~~~l~~~~~~~f 235 (387)
...++||+.|+ |-|..+..+++..+. +|+++..+++-.+.+++.+.. +.-+.... .|..+.+.....+.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGF------DDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC------ceeEEcCCcccHHHHHHHhCCCCc
Confidence 45679999984 567777888887654 788888888888888764421 11111111 133333333323569
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|+|+ |... . ..+..+.+.|+++|.++..
T Consensus 223 d~v~-d~~g---~-------~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYF-DNVG---G-------KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEE-ECCC---H-------HHHHHHHHHhccCcEEEEe
Confidence 9887 4321 1 2577888999999999864
No 350
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.26 E-value=3.7 Score=40.95 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEc--chhhHHhhCCCCCe
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG--DAVEFLRQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~g--D~~~~l~~~~~~~f 235 (387)
...++||++|+| -|..+..+++..+..+|++++.+++-.+.+++. .. +.-+..... |..+.+.+...+.+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GA------TDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CEEEcccccchHHHHHHHHHhCCCC
Confidence 456799999864 344555667776655799999999988888653 21 111111111 23343433323469
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCC-CeEEec
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNM 274 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~Lkpg-Gvlv~q 274 (387)
|+|+- ... ....++...+.|+++ |.++..
T Consensus 258 d~vid-~~g---------~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 258 DYTFE-CIG---------NVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred cEEEE-CCC---------ChHHHHHHHHhhccCCCeEEEE
Confidence 98873 321 113577788899887 988754
No 351
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.16 E-value=3 Score=41.18 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
...++||++|+|. |..+..++++ .+..+|+++|.+++-++.+++ +.. . ....+ + .+ ...+|
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---------~-~~~~~---~-~~--~~g~d 224 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---------T-YLIDD---I-PE--DLAVD 224 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---------e-eehhh---h-hh--ccCCc
Confidence 4467999999754 3344556664 445689999999988888865 211 0 11111 1 11 12489
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|| |..... .....++...+.|+++|.+++..
T Consensus 225 ~vi-D~~G~~------~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 225 HAF-ECVGGR------GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EEE-ECCCCC------ccHHHHHHHHHhCcCCcEEEEEe
Confidence 887 443211 01236788889999999988643
No 352
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.15 E-value=1.1 Score=43.19 Aligned_cols=102 Identities=17% Similarity=0.288 Sum_probs=62.4
Q ss_pred CEEEEEcCc--ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccc----c-CC-CCC-------CCEEEEEcchhhH
Q 016578 162 KTVLVVGGG--DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL----A-VG-FED-------PRVRLHIGDAVEF 226 (387)
Q Consensus 162 ~~VL~IG~G--~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~----~-~~-~~d-------~rv~v~~gD~~~~ 226 (387)
++|-+||+| .+.++..+++++ .+|+++|++++.++.+++.+... . .+ ++. .++++ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 479999999 455666666664 48999999999987655432111 0 01 110 13332 233211
Q ss_pred HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 227 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
+ +..|+||...+.. .....++|+.+.+.++|+.++++.+.+
T Consensus 80 ~-----~~aDlVi~av~e~-----~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 L-----KDADLVIEAATEN-----MDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred h-----ccCCeeeeccccc-----HHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 3579999755321 112457899999999999988765544
No 353
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.15 E-value=1.5 Score=42.67 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=26.0
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCH
Q 016578 160 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDK 194 (387)
Q Consensus 160 ~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~ 194 (387)
...+||++|+| -|+.+.+.+-..++.+++.+|.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 45689999987 466555555555688999999883
No 354
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.13 E-value=1.9 Score=41.86 Aligned_cols=100 Identities=18% Similarity=0.371 Sum_probs=59.2
Q ss_pred CEEEEEcCcc--cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccc-------cc-CC-CCC-------CCEEEEEcch
Q 016578 162 KTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPE-------LA-VG-FED-------PRVRLHIGDA 223 (387)
Q Consensus 162 ~~VL~IG~G~--G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~-------~~-~~-~~d-------~rv~v~~gD~ 223 (387)
++|.+||+|. +.++..+++++ .+|+++|.+++.++.+++.+.. .. .+ ... .+++.. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 5899999994 34555555553 4899999999999876654321 00 00 000 122221 222
Q ss_pred hhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 224 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 224 ~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+-+ ...|+||...+.... ...++|+.+.+.++++.+++.++
T Consensus 81 -~~~-----~~aDlVieav~e~~~-----~k~~~~~~l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -ESL-----SDADFIVEAVPEKLD-----LKRKVFAELERNVSPETIIASNT 121 (291)
T ss_pred -HHh-----CCCCEEEEcCcCcHH-----HHHHHHHHHHhhCCCCeEEEEcC
Confidence 111 247888876543211 24568888888888888887544
No 355
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=89.07 E-value=2.9 Score=41.67 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
...++||+.|+|. |..+..+++..+...|++++.++.-.+.+++.-. +.-+.....+..+.+.+.....+|+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-------~~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-------THVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-------cEEecCCCcCHHHHHHHHhCCCCcE
Confidence 4567999997643 5556667777666689999999988887766311 1001111112222232222346998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+--... ...+..+.+.|+++|.++...
T Consensus 258 vld~~g~----------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTTGV----------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EEECCCC----------cHHHHHHHHHhccCCEEEEeC
Confidence 8743211 135778889999999988643
No 356
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.79 E-value=1.5 Score=38.99 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=43.9
Q ss_pred HHHhccccCCCCCCEEEEEcCcccHH--HHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 149 MIAHLPLCSIPSPKTVLVVGGGDGGV--LREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 149 ml~~l~l~~~~~p~~VL~IG~G~G~~--~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
||.++|+...-+.++||+||+|.=+. ++.+++.. .+|+.|+ |+..+..++ + +.+++... .|
T Consensus 1 ~~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIs--p~~~~~l~~-l---------~~i~~~~~---~~ 63 (157)
T PRK06719 1 MYNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDTG--AFVTVVS--PEICKEMKE-L---------PYITWKQK---TF 63 (157)
T ss_pred CCcccceEEEcCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEc--CccCHHHHh-c---------cCcEEEec---cc
Confidence 45667776666788999999986444 23445543 5888883 544433332 1 13343322 22
Q ss_pred HhhCCCCCeeEEEEcCCC
Q 016578 227 LRQVPRGKYDAIIVDSSD 244 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~d 244 (387)
-... -..+|+||....+
T Consensus 64 ~~~d-l~~a~lViaaT~d 80 (157)
T PRK06719 64 SNDD-IKDAHLIYAATNQ 80 (157)
T ss_pred Chhc-CCCceEEEECCCC
Confidence 2111 2468998875543
No 357
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=88.65 E-value=3.8 Score=40.94 Aligned_cols=100 Identities=17% Similarity=0.136 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEE--EcchhhHHhhCCCCCe
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLH--IGDAVEFLRQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~--~gD~~~~l~~~~~~~f 235 (387)
...++||+.|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+... ..+..+.+.+...+.+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GA------TDCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC------CeEEcccccchhHHHHHHHHhCCCC
Confidence 4567999998653 44556678876666899999999998888764 11 1111111 0122232333222369
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCC-CeEEecc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~Lkpg-Gvlv~q~ 275 (387)
|+||-.... ...+....+.|+++ |.++...
T Consensus 257 d~vid~~G~----------~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 257 DYSFECIGN----------VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CEEEECCCC----------HHHHHHHHHHhhcCCCeEEEEe
Confidence 988733221 13567778889886 9887543
No 358
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=88.58 E-value=3.1 Score=39.99 Aligned_cols=105 Identities=21% Similarity=0.185 Sum_probs=56.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCC--CEEEEE---cchhhHHhhCCCCC
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDP--RVRLHI---GDAVEFLRQVPRGK 234 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~--rv~v~~---gD~~~~l~~~~~~~ 234 (387)
++.+||++|+|+|..+..++.+. ...|+.-|+-. +++..+.+.......++.. .+.+.. ++.... ....+..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhccCCc
Confidence 57799999999998888888875 46888888744 4444443322211111111 233322 222211 1111222
Q ss_pred eeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeE
Q 016578 235 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 271 (387)
Q Consensus 235 fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvl 271 (387)
+|+|+. +|.+.... . -......++..|..+|++
T Consensus 163 ~Dlila--sDvvy~~~-~-~e~Lv~tla~ll~~~~~i 195 (248)
T KOG2793|consen 163 FDLILA--SDVVYEEE-S-FEGLVKTLAFLLAKDGTI 195 (248)
T ss_pred ccEEEE--eeeeecCC-c-chhHHHHHHHHHhcCCeE
Confidence 999993 22221111 1 123566778888888843
No 359
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.56 E-value=6.2 Score=39.09 Aligned_cols=109 Identities=17% Similarity=0.302 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHh-cCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 159 PSPKTVLVVGGGD-GGVLREISR-HDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k-~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
+.+.+|.+||+|. |......+. .+-..++..+|++++..+--..-+.+.. .+. .++.+..+|..+ . ..-|
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~----~--~~ad 75 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSD----C--KDAD 75 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHH----h--CCCC
Confidence 4567999999976 555544443 3333489999998775433222222221 122 246666665333 2 2589
Q ss_pred EEEEcCCCCCCCcc---ccc--hHHHHHHHHHhc---cCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQ---ELV--EKPFFDTIAKAL---RPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~---~L~--~~ef~~~l~~~L---kpgGvlv~q~ 275 (387)
+||+....|..+.. .++ +...++.+...+ .|+|++++-+
T Consensus 76 ivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 76 LVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 99986655544321 122 223455544444 3788877543
No 360
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.55 E-value=2.5 Score=39.74 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=48.8
Q ss_pred CEEEEEcCcc--cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh--HHhhCCCCCeeE
Q 016578 162 KTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKYDA 237 (387)
Q Consensus 162 ~~VL~IG~G~--G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~--~l~~~~~~~fDv 237 (387)
++++++|+|. ..+++.|.+.+ ..|+.+|.|++.++..... .....++++|+.+ .|++..-..+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 3789999984 34445555543 5899999999987763221 1246788888854 466654568999
Q ss_pred EEEcCCC
Q 016578 238 IIVDSSD 244 (387)
Q Consensus 238 II~D~~d 244 (387)
++....+
T Consensus 70 vva~t~~ 76 (225)
T COG0569 70 VVAATGN 76 (225)
T ss_pred EEEeeCC
Confidence 9976544
No 361
>PRK08223 hypothetical protein; Validated
Probab=88.45 E-value=1.7 Score=42.66 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=24.6
Q ss_pred CCCEEEEEcCcc-cHH-HHHHHhcCCCceEEEEeCCHH
Q 016578 160 SPKTVLVVGGGD-GGV-LREISRHDSVELIDICEIDKM 195 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~-~~el~k~~~~~~Vt~VEiD~~ 195 (387)
...+||++|+|. |+. +..+++. ++.+++.+|-|.-
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCCc
Confidence 356999999884 444 4444444 6889999997743
No 362
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.25 E-value=1.6 Score=40.35 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=23.3
Q ss_pred CCCEEEEEcCcc-cH-HHHHHHhcCCCceEEEEeCC
Q 016578 160 SPKTVLVVGGGD-GG-VLREISRHDSVELIDICEID 193 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~-~~~el~k~~~~~~Vt~VEiD 193 (387)
...+||++|+|. |. ++..+++. ++.+++.+|-|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 456899999883 43 33334444 57899999988
No 363
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.25 E-value=3.4 Score=40.42 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=55.1
Q ss_pred CCEEEEEcCcc--cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 161 PKTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 161 p~~VL~IG~G~--G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
-.+|.+||+|. +.+++.+.+.....+|+++|.+++..+.+++. . ..+ . ...+..+.+ +..|+|
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g-----~~~---~-~~~~~~~~~-----~~aDvV 70 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-G-----LGD---R-VTTSAAEAV-----KGADLV 70 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-C-----CCc---e-ecCCHHHHh-----cCCCEE
Confidence 35899999885 23444455443235899999999887777652 1 101 1 112322222 358999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
|+..+... ..++++.+...++++.+++.
T Consensus 71 iiavp~~~-------~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 71 ILCVPVGA-------SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred EECCCHHH-------HHHHHHHHHhhCCCCCEEEe
Confidence 98665321 24567777778888886653
No 364
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.22 E-value=3.6 Score=39.87 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=58.4
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHH--hhCCCCCe
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL--RQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l--~~~~~~~f 235 (387)
....+||++|+|. |..+.++++..+...|++++-+++..+.++++-. + .++..+-..+. +....+.+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-------~---~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA-------T---ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------e---EEecCCCCCHHHHHHhcCCCC
Confidence 4567999997652 5566667777655458899999988888765421 0 11111111110 12224579
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|+|+-... .......+.+.|+++|.++..
T Consensus 228 d~v~~~~~----------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 228 DVVIEATG----------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred cEEEECCC----------ChHHHHHHHHHHhcCCEEEEE
Confidence 99884321 123677888999999998853
No 365
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=88.19 E-value=5.1 Score=41.21 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=59.6
Q ss_pred CEEEEEcCcccHHH--HHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh----------
Q 016578 162 KTVLVVGGGDGGVL--REISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ---------- 229 (387)
Q Consensus 162 ~~VL~IG~G~G~~~--~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~---------- 229 (387)
++|.+||.|--+.. ..+++++ -+|+++|+|++.++..+.-.... ..+ +..+.+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~~~~----~e~-------~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGEIHI----VEP-------DLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCCCCc----CCC-------CHHHHHHHHhhcCceeee
Confidence 57999999954433 3345553 58999999999988654321110 011 11111110
Q ss_pred CCCCCeeEEEEcCCCCCCC---ccccchHHHHHHHHHhccCCCeEEeccccc
Q 016578 230 VPRGKYDAIIVDSSDPVGP---AQELVEKPFFDTIAKALRPGGVLCNMAESM 278 (387)
Q Consensus 230 ~~~~~fDvII~D~~dp~~~---~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~ 278 (387)
...+.-|+||+..+.|... ++--+-.+..+.+.+.|++|-+++..+..+
T Consensus 71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 0012579999887765321 111123345677888899888877655433
No 366
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=88.17 E-value=4.7 Score=40.12 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE--cchhhHHhhCCCCCe
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI--GDAVEFLRQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~--gD~~~~l~~~~~~~f 235 (387)
...++||++|+| -|..+..+++..+..+|++++.+++-.+.+++. .. +.-+.... .+..+.+.+...+.+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GA------TDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CcEeccccccchHHHHHHHHhCCCC
Confidence 456799999764 344445667776666899999999988888663 21 10111111 112233333223469
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCC-CeEEecc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~Lkpg-Gvlv~q~ 275 (387)
|+||--... ...+....+.|+++ |.++...
T Consensus 256 d~vid~~g~----------~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 256 DYSFECTGN----------ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CEEEECCCC----------hHHHHHHHHhcccCCCEEEEEc
Confidence 988732211 13567788889885 9887643
No 367
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.09 E-value=1.3 Score=41.99 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=25.0
Q ss_pred CCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCH
Q 016578 161 PKTVLVVGGG-DGGVLREISRHDSVELIDICEIDK 194 (387)
Q Consensus 161 p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~ 194 (387)
..+||++|+| .|+...+.+-..++.+++.+|-|.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4589999987 455555554455789999999774
No 368
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.05 E-value=4 Score=39.57 Aligned_cols=102 Identities=21% Similarity=0.297 Sum_probs=61.2
Q ss_pred CEEEEEcCcccH--HHHHHHhcCCCceEEEEeCCHHHHHHHHhhccccc------CCCCC--------CCEEEEEcchhh
Q 016578 162 KTVLVVGGGDGG--VLREISRHDSVELIDICEIDKMVIDVSKKYFPELA------VGFED--------PRVRLHIGDAVE 225 (387)
Q Consensus 162 ~~VL~IG~G~G~--~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~------~~~~d--------~rv~v~~gD~~~ 225 (387)
++|.+||+|.-+ ++..+++.+ .+|+++|++++.++.+++.+.... ..+.. .++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG--FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 589999998544 334444443 589999999999888876532110 01110 23432 234332
Q ss_pred HHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccc
Q 016578 226 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 226 ~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
.+ ..-|+||...+... -...++++.+...++++-+++.++.
T Consensus 81 a~-----~~aDlVieavpe~~-----~~k~~~~~~l~~~~~~~~ii~sntS 121 (287)
T PRK08293 81 AV-----KDADLVIEAVPEDP-----EIKGDFYEELAKVAPEKTIFATNSS 121 (287)
T ss_pred Hh-----cCCCEEEEeccCCH-----HHHHHHHHHHHhhCCCCCEEEECcc
Confidence 22 24789997665321 1245678888888888888766543
No 369
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.04 E-value=2.8 Score=44.73 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=59.9
Q ss_pred CEEEEEcCcccHHHHHHHhc--CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH--HhhCCCCCeeE
Q 016578 162 KTVLVVGGGDGGVLREISRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--LRQVPRGKYDA 237 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~--~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~--l~~~~~~~fDv 237 (387)
.+|+++|+|. +++.+++. ....+++++|.|++.++.+++. ..+++.+|+.+. +++..-++.|.
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 5789998874 44444432 1125899999999998888752 357888998653 44444458998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
+++..++... . ...-.+.+.+.|+-.++..+.
T Consensus 485 viv~~~~~~~------~-~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 485 LLLTIPNGYE------A-GEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred EEEEcCChHH------H-HHHHHHHHHHCCCCeEEEEEC
Confidence 8876554221 1 123334455678777776543
No 370
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.93 E-value=1.8 Score=43.44 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=23.8
Q ss_pred CCCEEEEEcCcc-cH-HHHHHHhcCCCceEEEEeCCH
Q 016578 160 SPKTVLVVGGGD-GG-VLREISRHDSVELIDICEIDK 194 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~-~~~el~k~~~~~~Vt~VEiD~ 194 (387)
...+||+||+|. |. ++..|++. ++.+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 356899999983 33 33334444 578999999885
No 371
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.90 E-value=3.2 Score=44.84 Aligned_cols=96 Identities=24% Similarity=0.310 Sum_probs=61.4
Q ss_pred CEEEEEcCcccH-H-HHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh--HHhhCCCCCeeE
Q 016578 162 KTVLVVGGGDGG-V-LREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKYDA 237 (387)
Q Consensus 162 ~~VL~IG~G~G~-~-~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~--~l~~~~~~~fDv 237 (387)
.+|+++|+|.=+ . ++.+.++ ..+++++|.|++.++.++++ ...++.||+.+ .+++..-++.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 479998887432 2 2223333 35899999999999988763 24688899864 455444457998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
|++-..|+.. +. ..-...+.+.|+-.++..+.+
T Consensus 468 vv~~~~d~~~------n~-~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 468 IVITCNEPED------TM-KIVELCQQHFPHLHILARARG 500 (601)
T ss_pred EEEEeCCHHH------HH-HHHHHHHHHCCCCeEEEEeCC
Confidence 8876655321 11 233445567888877765543
No 372
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=87.88 E-value=6.9 Score=35.14 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=54.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
.+..+|+.||+=+-.....- ...+..++...|+|...-....+.|-.. .++.| .++.... .++||+|
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~~F~fy--D~~~p---------~~~~~~l-~~~~d~v 90 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGDEFVFY--DYNEP---------EELPEEL-KGKFDVV 90 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCcceEEC--CCCCh---------hhhhhhc-CCCceEE
Confidence 34579999998765444332 1345679999999998755332211111 11111 1122223 4689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
|+|++. -.+...+ .+-+.++..+++++.++.
T Consensus 91 v~DPPF---l~~ec~~-k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 91 VIDPPF---LSEECLT-KTAETIRLLLKPGGKIIL 121 (162)
T ss_pred EECCCC---CCHHHHH-HHHHHHHHHhCccceEEE
Confidence 999875 1111111 133556666688887774
No 373
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=87.84 E-value=5.3 Score=39.76 Aligned_cols=99 Identities=18% Similarity=0.148 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEc--chhhHHhhCCCCCe
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG--DAVEFLRQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~g--D~~~~l~~~~~~~f 235 (387)
.+.++||++|+| -|..+..+++..+...|++++.+++-.+.+++. .. +.-+..... |..+.+.+...+.+
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL-GA------TECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------CeecccccccchHHHHHHHHhCCCC
Confidence 456799999754 334445567776666789999888888888653 21 111111122 33333333223569
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhcc-CCCeEEec
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALR-PGGVLCNM 274 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~Lk-pgGvlv~q 274 (387)
|+|+ |... ....+....+.|+ ++|.++..
T Consensus 255 d~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 255 DYAF-EVIG---------SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred cEEE-ECCC---------CHHHHHHHHHHhccCCCEEEEE
Confidence 9888 3321 1135777888999 99998864
No 374
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.70 E-value=2.3 Score=42.82 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCH
Q 016578 160 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDK 194 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~ 194 (387)
...+||++|+|. |......+-..++.+++.+|-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 356999999984 44333333344688999999885
No 375
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=87.68 E-value=0.46 Score=46.29 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=66.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
...-+||+|||.|-.+. .. +...+.++|+....+..+++-= . ..+..+|+..... ++..||.++
T Consensus 45 ~gsv~~d~gCGngky~~---~~-p~~~~ig~D~c~~l~~~ak~~~---------~-~~~~~ad~l~~p~--~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VN-PLCLIIGCDLCTGLLGGAKRSG---------G-DNVCRADALKLPF--REESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCc---CC-CcceeeecchhhhhccccccCC---------C-ceeehhhhhcCCC--CCCccccch
Confidence 34579999999995432 22 4568999999999888887631 1 1677788876532 356899988
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.-+.-+.- ....-....++.+.+.|+|||...+.+
T Consensus 109 siavihhl-sT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 109 SIAVIHHL-STRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhh-hhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 65432211 111223568999999999999866543
No 376
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=87.54 E-value=5.1 Score=39.84 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE--cchhhHHhhCCCCCe
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI--GDAVEFLRQVPRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~--gD~~~~l~~~~~~~f 235 (387)
...++||+.|+| -|..+..+++..+..+|++++.+++-.+.+++. .. +.-+.... .+..+.+++...+.+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GV------TEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcccccchhHHHHHHHHhCCCC
Confidence 456799999864 244445567776656899999999998888763 21 10111111 112223333223469
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCC-CeEEecc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~Lkpg-Gvlv~q~ 275 (387)
|+++- ... ....+....+.++++ |.++...
T Consensus 259 d~vid-~~G---------~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 259 DYSFE-CTG---------NIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CEEEE-CCC---------ChHHHHHHHHHhhcCCCEEEEEC
Confidence 97773 321 123567788899996 9888643
No 377
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.43 E-value=3.4 Score=41.17 Aligned_cols=103 Identities=15% Similarity=0.213 Sum_probs=63.3
Q ss_pred CCEEEEEcCcc--cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccc----cc-CCC----CCCCEEEEEcchhhHHhh
Q 016578 161 PKTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPE----LA-VGF----EDPRVRLHIGDAVEFLRQ 229 (387)
Q Consensus 161 p~~VL~IG~G~--G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~----~~-~~~----~d~rv~v~~gD~~~~l~~ 229 (387)
-++|-+||+|. .+++..++.++ .+|++.|++++.++.+++.+.. .. .++ ...++++. .|..+-+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG--~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence 46899999994 44455556553 6999999999988776654321 10 010 01234433 2322221
Q ss_pred CCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccc
Q 016578 230 VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 276 (387)
Q Consensus 230 ~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~ 276 (387)
..-|+||-..+.... ...++|+.+-+.++|+-+|..++.
T Consensus 82 ---~~aDlViEavpE~l~-----vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 ---ADADFIQESAPEREA-----LKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred ---cCCCEEEECCcCCHH-----HHHHHHHHHHHhCCCCeEEEECCC
Confidence 347889876543221 356788999999999988776653
No 378
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.40 E-value=2.6 Score=40.85 Aligned_cols=102 Identities=20% Similarity=0.293 Sum_probs=61.3
Q ss_pred CEEEEEcCcccH--HHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccc-----cCC-CCC-------CCEEEEEcchhhH
Q 016578 162 KTVLVVGGGDGG--VLREISRHDSVELIDICEIDKMVIDVSKKYFPEL-----AVG-FED-------PRVRLHIGDAVEF 226 (387)
Q Consensus 162 ~~VL~IG~G~G~--~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~-----~~~-~~d-------~rv~v~~gD~~~~ 226 (387)
++|.+||+|.-+ ++..+++.. .+|+++|.+++.++.+.+.+... ..+ +.. .++++. .|. +-
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG--YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-ED 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HH
Confidence 589999999544 444455543 58999999999988765432211 001 110 233332 332 21
Q ss_pred HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 227 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
+ ...|+||...+... -....+|+.+...++++.+++.++.+
T Consensus 81 ~-----~~aD~Vieavpe~~-----~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 81 L-----ADCDLVIEAATEDE-----TVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred h-----cCCCEEEEcCcCCH-----HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2 25799997665321 12346788899999999988865443
No 379
>PRK13699 putative methylase; Provisional
Probab=87.33 E-value=1.2 Score=42.06 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=40.9
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccc
Q 016578 158 IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL 207 (387)
Q Consensus 158 ~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~ 207 (387)
......|||--+|+|.++..+.+.. .+..++|++++..+.+++.+...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHH
Confidence 3456789999999999999888774 68999999999999999987543
No 380
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.33 E-value=2.5 Score=41.24 Aligned_cols=102 Identities=20% Similarity=0.297 Sum_probs=63.6
Q ss_pred CEEEEEcCc--ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccccc-----CC-CCC-------CCEEEEEcchhhH
Q 016578 162 KTVLVVGGG--DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-----VG-FED-------PRVRLHIGDAVEF 226 (387)
Q Consensus 162 ~~VL~IG~G--~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~-----~~-~~d-------~rv~v~~gD~~~~ 226 (387)
++|-+||+| .++++..+++.+ .+|+.+|.+++.++.+++.+...- .+ +.+ .++++ ..|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence 489999999 455555566664 689999999999988776543221 01 111 13332 2332 11
Q ss_pred HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhc-cCCCeEEecccc
Q 016578 227 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKAL-RPGGVLCNMAES 277 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~L-kpgGvlv~q~~s 277 (387)
+ ..-|+||-..++.. -...++|..+.+.+ +|+.+++.++.+
T Consensus 82 ~-----~~~d~ViEav~E~~-----~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 82 F-----ADRQLVIEAVVEDE-----AVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred h-----CCCCEEEEecccCH-----HHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 24788886554321 22557888888888 888888876543
No 381
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=87.10 E-value=1.5 Score=41.91 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=51.5
Q ss_pred CCCEEEEEcC-cccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCC--------------CCCCCEEEEEcchh
Q 016578 160 SPKTVLVVGG-GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVG--------------FEDPRVRLHIGDAV 224 (387)
Q Consensus 160 ~p~~VL~IG~-G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~--------------~~d~rv~v~~gD~~ 224 (387)
+..+|+++|. |-|+.+.+.+.+.++.+++.+|.|.--+.-..+.+...... .=+|+.++..-|-+
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 3568999995 56888888887778899999998875443322222211000 01577777665543
Q ss_pred ---hHHhhCCCCCeeEEEEcCCCCC
Q 016578 225 ---EFLRQVPRGKYDAIIVDSSDPV 246 (387)
Q Consensus 225 ---~~l~~~~~~~fDvII~D~~dp~ 246 (387)
+.+.+.-...||.|| |+.|..
T Consensus 109 ~t~en~~~~~~~~~DyvI-DaiD~v 132 (263)
T COG1179 109 ITEENLEDLLSKGFDYVI-DAIDSV 132 (263)
T ss_pred hCHhHHHHHhcCCCCEEE-Echhhh
Confidence 122222234799987 555533
No 382
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=87.06 E-value=8.1 Score=37.65 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+..+||+.|+|. |..+..+++..+...|+++.-+++..+.++++ .. +.-+........++.+......+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GA------DDTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEecCccccHHHHHHHhCCCCCCE
Confidence 4566999997654 55666677776655588898888877776543 11 1011111111122222222345999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|+-... ....+..+.++|+++|.++..
T Consensus 231 vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAG----------SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred EEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 884321 123577889999999998854
No 383
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.96 E-value=6.7 Score=38.55 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=56.8
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
...++||+.|+| .|..+..+++..+. +|++++.+++-.+.+++.=. + .++. ..+ ...+.+|+
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga-------~---~vi~--~~~----~~~~~~d~ 226 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGA-------A---SAGG--AYD----TPPEPLDA 226 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCC-------c---eecc--ccc----cCcccceE
Confidence 456799999964 45555667777654 79999999988888877421 1 0111 000 11235887
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
++..... .+.++...+.|+++|.+++-.
T Consensus 227 ~i~~~~~----------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 227 AILFAPA----------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EEECCCc----------HHHHHHHHHhhCCCcEEEEEe
Confidence 6643221 135778889999999998643
No 384
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.89 E-value=19 Score=37.15 Aligned_cols=87 Identities=21% Similarity=0.220 Sum_probs=51.2
Q ss_pred CCCEEEEEcCcccH-HHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGGDGG-VLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G~G~-~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..++|+++|+|.=+ .....++..+ .+|+++|.|+.-...++.. + .++. +..+.+ ...|+|
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~------G-----~~v~--~leeal-----~~aDVV 254 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMD------G-----FRVM--TMEEAA-----KIGDIF 254 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhc------C-----CEeC--CHHHHH-----hcCCEE
Confidence 56799999998643 3334455543 5899999999654433321 1 1111 222222 247988
Q ss_pred EEcCCCCCCCccccchHHHHH-HHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFD-TIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~-~l~~~LkpgGvlv~q~ 275 (387)
|.-.. +...+. .....+++|++++.-+
T Consensus 255 ItaTG----------~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 255 ITATG----------NKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred EECCC----------CHHHHHHHHHhcCCCCcEEEEEC
Confidence 75321 123444 3667899999988654
No 385
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=86.88 E-value=0.64 Score=44.29 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=36.3
Q ss_pred CCEEEEEcCcccHHHHHHHhcCC--------CceEEEEeCCHHHHHHHHhhccc
Q 016578 161 PKTVLVVGGGDGGVLREISRHDS--------VELIDICEIDKMVIDVSKKYFPE 206 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~--------~~~Vt~VEiD~~vi~~ar~~~~~ 206 (387)
+-+|+++|+|+|.++..+++... ..+++.||++|.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 46999999999999999887521 24899999999999998888765
No 386
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=86.83 E-value=7.3 Score=38.05 Aligned_cols=99 Identities=24% Similarity=0.312 Sum_probs=58.4
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCee
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fD 236 (387)
.+..+||+.|+| .|..+.++++..+..+|++++.++.-.+.+++.-. +.-+.....+....+... ....+|
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~v~~~~~~~~~~i~~~~~~~~~d 237 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA-------THTVNSAKGDAIEQVLELTDGRGVD 237 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-------CceeccccccHHHHHHHHhCCCCCC
Confidence 456789997653 23344456676654578889998888777776321 111222223332223222 234699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+|+ |... ....++.+.+.|+++|.++..
T Consensus 238 ~vl-d~~g---------~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 238 VVI-EAVG---------IPATFELCQELVAPGGHIANV 265 (345)
T ss_pred EEE-ECCC---------CHHHHHHHHHhccCCcEEEEe
Confidence 888 3321 123567888999999999854
No 387
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.75 E-value=3.3 Score=40.20 Aligned_cols=103 Identities=21% Similarity=0.299 Sum_probs=60.6
Q ss_pred CCEEEEEcCcc--cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccc----cc-CC-CCC-------CCEEEEEcchhh
Q 016578 161 PKTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPE----LA-VG-FED-------PRVRLHIGDAVE 225 (387)
Q Consensus 161 p~~VL~IG~G~--G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~----~~-~~-~~d-------~rv~v~~gD~~~ 225 (387)
-++|-+||+|. ..++..++++. .+|+++|.+++.++.+++.+.. .. .+ +.+ .+++ ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 35899999993 44555566653 5899999999998866554321 10 00 000 0122 22232 2
Q ss_pred HHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 226 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 226 ~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
-+ ..-|+||...++... ....+|+.+...++++.+++.++.+
T Consensus 80 ~~-----~~aD~Vieav~e~~~-----~k~~v~~~l~~~~~~~~il~s~tS~ 121 (295)
T PLN02545 80 EL-----RDADFIIEAIVESED-----LKKKLFSELDRICKPSAILASNTSS 121 (295)
T ss_pred Hh-----CCCCEEEEcCccCHH-----HHHHHHHHHHhhCCCCcEEEECCCC
Confidence 11 246899976653221 1345788888889998888765433
No 388
>PRK08618 ornithine cyclodeaminase; Validated
Probab=86.63 E-value=21 Score=35.36 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=71.3
Q ss_pred eeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccH--HHHHHHhcCCCceEEEEeCC
Q 016578 116 QEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGG--VLREISRHDSVELIDICEID 193 (387)
Q Consensus 116 q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~--~~~el~k~~~~~~Vt~VEiD 193 (387)
+.|.+++..+---..++||..-..-|---. .-..+ ..+..+++++|++||+|.=+ .+..++...+.++|..++.+
T Consensus 85 g~i~l~d~~tG~p~a~~d~~~lT~~RTaa~-sala~--~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~ 161 (325)
T PRK08618 85 GTVILSDFETGEVLAILDGTYLTQIRTGAL-SGVAT--KYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT 161 (325)
T ss_pred EEEEEEeCCCCceEEEEccchhhhhhHHHH-HHHHH--HHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC
Confidence 457777765433345668765443332211 11111 12234678899999998533 22334444567899999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEE
Q 016578 194 KMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 272 (387)
Q Consensus 194 ~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv 272 (387)
++-.+...+.+... + ..++. ...|..+.+ ...|+|++-.+.. .| ++. +.|+||-.++
T Consensus 162 ~~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~-----~~aDiVi~aT~s~-~p--------~i~---~~l~~G~hV~ 218 (325)
T PRK08618 162 FEKAYAFAQEIQSK---F-NTEIY-VVNSADEAI-----EEADIIVTVTNAK-TP--------VFS---EKLKKGVHIN 218 (325)
T ss_pred HHHHHHHHHHHHHh---c-CCcEE-EeCCHHHHH-----hcCCEEEEccCCC-Cc--------chH---HhcCCCcEEE
Confidence 87665544444311 0 11222 245554443 2589999765432 22 232 5778865554
No 389
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.41 E-value=4.3 Score=39.65 Aligned_cols=101 Identities=10% Similarity=0.246 Sum_probs=57.8
Q ss_pred CEEEEEcCcc--cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCC--------CCEEEEEcchhhHHhhCC
Q 016578 162 KTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED--------PRVRLHIGDAVEFLRQVP 231 (387)
Q Consensus 162 ~~VL~IG~G~--G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d--------~rv~v~~gD~~~~l~~~~ 231 (387)
++|.+||+|. +.++..+++.. .+|+++|.+++.++.+++.+......+.. .++++ ..|..+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG--LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----
Confidence 5899999994 34445555543 48999999999988887643211000000 11222 23322222
Q ss_pred CCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 232 RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 232 ~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+..|+||...+.... ...+++..+...++++-++++.+
T Consensus 78 -~~aDlVi~av~~~~~-----~~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 78 -SGADLVIEAVPEKLE-----LKRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred -ccCCEEEEeccCcHH-----HHHHHHHHHHHhCCCCcEEEECC
Confidence 257999976543211 13457777877777776665544
No 390
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=86.22 E-value=2.5 Score=38.92 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCEEEEEcCcccHHHHHHHh---cCCCceEEEEeCCH
Q 016578 161 PKTVLVVGGGDGGVLREISR---HDSVELIDICEIDK 194 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k---~~~~~~Vt~VEiD~ 194 (387)
..+||++|+|. ++.++++ ..++.+++.+|-|.
T Consensus 21 ~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCc
Confidence 46899999874 4444443 34689999999774
No 391
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.21 E-value=1.3 Score=45.07 Aligned_cols=59 Identities=29% Similarity=0.513 Sum_probs=45.1
Q ss_pred CCEEEEEcchhhHHhhCCCCCeeEEE-EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 214 PRVRLHIGDAVEFLRQVPRGKYDAII-VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 214 ~rv~v~~gD~~~~l~~~~~~~fDvII-~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.+++++.++..++++..+++++|..+ +|..|-..+ . . -.+.++.+.+.++|||.++.-+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~-~-~-~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDP-E-Q-LNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCH-H-H-HHHHHHHHHHHhCCCCEEEEee
Confidence 59999999999999887778999766 566553222 1 1 3457889999999999998643
No 392
>PRK06141 ornithine cyclodeaminase; Validated
Probab=86.12 E-value=36 Score=33.59 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=70.4
Q ss_pred eeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHHHH--HHhcCCCceEEEEeCC
Q 016578 116 QEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLRE--ISRHDSVELIDICEID 193 (387)
Q Consensus 116 q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~e--l~k~~~~~~Vt~VEiD 193 (387)
+-|.+++..+-.-.-++||..-..-|--. -....+. .+..++.++|++||+|.=+-... ++...+..+|++++.+
T Consensus 83 g~v~l~d~~tG~p~ai~d~~~lT~~RTaa-~sala~~--~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs 159 (314)
T PRK06141 83 STYLLFDGRTGEPLALVDGTELTARRTAA-ASALAAS--YLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD 159 (314)
T ss_pred EEEEEEECCCCCEEEEEcCcchhcchhHH-HHHHHHH--HhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 45666766543344567887655433321 1111111 12346788999999875333332 2333457899999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEE
Q 016578 194 KMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 272 (387)
Q Consensus 194 ~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv 272 (387)
++-.+...+.+... ..++.. ..+..+-+ ...|+|++-.+.+ .| ++.. +.|+||-.+.
T Consensus 160 ~~~a~~~a~~~~~~-----g~~~~~-~~~~~~av-----~~aDIVi~aT~s~-~p---vl~~-------~~l~~g~~i~ 216 (314)
T PRK06141 160 PAKAEALAAELRAQ-----GFDAEV-VTDLEAAV-----RQADIISCATLST-EP---LVRG-------EWLKPGTHLD 216 (314)
T ss_pred HHHHHHHHHHHHhc-----CCceEE-eCCHHHHH-----hcCCEEEEeeCCC-CC---EecH-------HHcCCCCEEE
Confidence 87766555544321 112332 34444333 3589987544432 22 2221 4678877544
No 393
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.01 E-value=7.4 Score=33.37 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=42.5
Q ss_pred CCCEEEEEcCcccHHHHHHH---hcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 160 SPKTVLVVGGGDGGVLREIS---RHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~---k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
+.++||+||+| +.++.++ ...+..+|+.+.-+.+-.+...+.++ ...++++.-+-.. +. ...+|
T Consensus 11 ~~~~vlviGaG--g~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~~~~---~~-~~~~D 77 (135)
T PF01488_consen 11 KGKRVLVIGAG--GAARAVAAALAALGAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLEDLE---EA-LQEAD 77 (135)
T ss_dssp TTSEEEEESSS--HHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGGGHC---HH-HHTES
T ss_pred CCCEEEEECCH--HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHHHHH---HH-HhhCC
Confidence 57799999975 3443332 22356789999998765544444442 2356665544222 11 13699
Q ss_pred EEEEcCCC
Q 016578 237 AIIVDSSD 244 (387)
Q Consensus 237 vII~D~~d 244 (387)
+||.-.+.
T Consensus 78 ivI~aT~~ 85 (135)
T PF01488_consen 78 IVINATPS 85 (135)
T ss_dssp EEEE-SST
T ss_pred eEEEecCC
Confidence 99976554
No 394
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=85.79 E-value=8.4 Score=31.51 Aligned_cols=107 Identities=20% Similarity=0.268 Sum_probs=66.7
Q ss_pred EEEEEcCcccHHHH--HHHhcCCCceEE-EEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 163 TVLVVGGGDGGVLR--EISRHDSVELID-ICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 163 ~VL~IG~G~G~~~~--el~k~~~~~~Vt-~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
||.+||+|..+... .+.+..+..+++ ++|.+++-.+.+.+.+. +. ...|..+.+.. ...|+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~---~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLAD---EDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHH---TTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHh---hcCCEEE
Confidence 78999998664433 234442344554 78999988777655542 22 66777777754 3699999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccc-hhhhHHHHHHHHHHHH
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW-LHTHLIEDMISICRET 295 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~-~~~~~~~~~~~~l~~~ 295 (387)
+..++.. -++.+..+|+-|--+++ +-|. .+.+..+++.+..++.
T Consensus 68 I~tp~~~----------h~~~~~~~l~~g~~v~~--EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 68 IATPPSS----------HAEIAKKALEAGKHVLV--EKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EESSGGG----------HHHHHHHHHHTTSEEEE--ESSSSSSHHHHHHHHHHHHHH
T ss_pred EecCCcc----------hHHHHHHHHHcCCEEEE--EcCCcCCHHHHHHHHHHHHHh
Confidence 8765421 25566667776665554 3332 3555667777766654
No 395
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=85.57 E-value=4.1 Score=39.96 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=23.4
Q ss_pred CCEEEEEcCcccHHHHHHHhc---CCCceEEEEeCCH
Q 016578 161 PKTVLVVGGGDGGVLREISRH---DSVELIDICEIDK 194 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~---~~~~~Vt~VEiD~ 194 (387)
..+||++|+| +++.++++. .++.+++.+|-|.
T Consensus 19 ~s~VLIvG~g--GLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLG--GLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCC--HHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 4589999987 445555543 4689999999774
No 396
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=85.51 E-value=9.2 Score=31.18 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=50.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 160 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
+.++||+||+|.-+..+.-.-.....+|+.+..+. +.++ .++++...+..+ .. ..+|+|+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~~~---~l--~~~~lV~ 65 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREFEE---DL--DGADLVF 65 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-GG---GC--TTESEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhHHH---HH--hhheEEE
Confidence 57899999998766554433233347999988765 2222 244554443222 22 3599999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccccc
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 278 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~ 278 (387)
+...++ +.-+.+++..+.-|+++..++.|
T Consensus 66 ~at~d~----------~~n~~i~~~a~~~~i~vn~~D~p 94 (103)
T PF13241_consen 66 AATDDP----------ELNEAIYADARARGILVNVVDDP 94 (103)
T ss_dssp E-SS-H----------HHHHHHHHHHHHTTSEEEETT-C
T ss_pred ecCCCH----------HHHHHHHHHHhhCCEEEEECCCc
Confidence 765431 23445555566679998766544
No 397
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.49 E-value=4.5 Score=41.47 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=49.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh--HHhhCCCCCe
Q 016578 160 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKY 235 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~--~l~~~~~~~f 235 (387)
..++|+++|+| .+++.+++.. ....|+++|.|++.++..++.+ +.+.++.+|+.+ .+.+..-+++
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 46789999986 3444443321 1358999999999988777653 245788899853 3443334579
Q ss_pred eEEEEcCCC
Q 016578 236 DAIIVDSSD 244 (387)
Q Consensus 236 DvII~D~~d 244 (387)
|.||+-..+
T Consensus 299 ~~vi~~~~~ 307 (453)
T PRK09496 299 DAFIALTND 307 (453)
T ss_pred CEEEECCCC
Confidence 999876554
No 398
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.43 E-value=6.1 Score=40.79 Aligned_cols=87 Identities=18% Similarity=0.311 Sum_probs=54.7
Q ss_pred CCCEEEEEcCcccH-HHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGGDGG-VLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G~G~-~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..++|+++|+|.=+ ....+++..+. +|+++|+|+.-.+.|++. ++ ++. +..+.+ ...|+|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~------G~-----~~~--~~~e~v-----~~aDVV 261 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME------GY-----EVM--TMEEAV-----KEGDIF 261 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc------CC-----EEc--cHHHHH-----cCCCEE
Confidence 56799999999644 33445555544 899999999888877663 11 111 112222 247988
Q ss_pred EEcCCCCCCCccccchHHHHHH-HHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDT-IAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~-l~~~LkpgGvlv~q~ 275 (387)
|.-.. +...+.. ..+.+++||+++.-+
T Consensus 262 I~atG----------~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTG----------NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCC----------CHHHHHHHHHhcCCCCcEEEEeC
Confidence 85321 1234544 478899999998654
No 399
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.39 E-value=2.3 Score=38.32 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=22.4
Q ss_pred EEEEEcCcc-cH-HHHHHHhcCCCceEEEEeCCH
Q 016578 163 TVLVVGGGD-GG-VLREISRHDSVELIDICEIDK 194 (387)
Q Consensus 163 ~VL~IG~G~-G~-~~~el~k~~~~~~Vt~VEiD~ 194 (387)
+|++||+|. |+ ++..+++. ++.+++.+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 589999883 44 34444554 678999999986
No 400
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=85.34 E-value=20 Score=30.62 Aligned_cols=73 Identities=23% Similarity=0.254 Sum_probs=42.1
Q ss_pred CCCCEEEEEcCcccHHHHHHH----hcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCC
Q 016578 159 PSPKTVLVVGGGDGGVLREIS----RHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGK 234 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~----k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~ 234 (387)
.+.++|+++|+| .+++.++ +.. ..+|++++.+++-.+...+.+... .+.....|..+. -+.
T Consensus 17 ~~~~~i~iiG~G--~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-----~~~ 81 (155)
T cd01065 17 LKGKKVLILGAG--GAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL-----LAE 81 (155)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc-----ccc
Confidence 356799999986 3444443 332 468999999987665544433210 011222332221 246
Q ss_pred eeEEEEcCCCCC
Q 016578 235 YDAIIVDSSDPV 246 (387)
Q Consensus 235 fDvII~D~~dp~ 246 (387)
.|+||+..+...
T Consensus 82 ~Dvvi~~~~~~~ 93 (155)
T cd01065 82 ADLIINTTPVGM 93 (155)
T ss_pred CCEEEeCcCCCC
Confidence 999998776544
No 401
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.33 E-value=2.5 Score=39.46 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=23.7
Q ss_pred CCCEEEEEcCcc-cHH-HHHHHhcCCCceEEEEeCC
Q 016578 160 SPKTVLVVGGGD-GGV-LREISRHDSVELIDICEID 193 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~-~~el~k~~~~~~Vt~VEiD 193 (387)
...+|++||+|. |+. +..+++. ++.+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 356899999873 443 3444444 68899999998
No 402
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=85.30 E-value=7.1 Score=38.00 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCee
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fD 236 (387)
...++||+.|+|. |..+..+++..+ .+|+++.-+++..+.++++-. +.-+.....+..+.+... .++.+|
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~g~-------~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFARELGA-------DDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHhCC-------CEEecCcccCHHHHHHHHhCCCCCC
Confidence 4567999997653 666677777754 578888888888887765421 111122222333333322 234699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+|+-... ..+.+..+.+.|+++|.++..
T Consensus 230 ~vld~~g----------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDATG----------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EEEECCC----------CHHHHHHHHHHHhcCCEEEEE
Confidence 9885321 123577888999999998853
No 403
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=85.25 E-value=10 Score=37.25 Aligned_cols=107 Identities=14% Similarity=0.329 Sum_probs=55.5
Q ss_pred CEEEEEcCcc-cHHHHH-HHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 162 KTVLVVGGGD-GGVLRE-ISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 162 ~~VL~IG~G~-G~~~~e-l~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
++|.+||+|. |..... ++......+++.+|++++..+....-+.+.. .+....+.+..+|..+ . ...|+||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~----l--~~aDIVI 73 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD----C--KDADIVV 73 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH----h--CCCCEEE
Confidence 3799999875 333333 3333323489999998876554333332211 1112344555555332 1 3699999
Q ss_pred EcCCCCCCCcc---ccc--hHHHHHHHHHh---ccCCCeEEecc
Q 016578 240 VDSSDPVGPAQ---ELV--EKPFFDTIAKA---LRPGGVLCNMA 275 (387)
Q Consensus 240 ~D~~dp~~~~~---~L~--~~ef~~~l~~~---LkpgGvlv~q~ 275 (387)
+-...|..+.. .|+ +.+.++.+.+. -.|+|++++-+
T Consensus 74 itag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 74 ITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 87665544321 122 12233333333 46788876543
No 404
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=85.23 E-value=4.8 Score=42.64 Aligned_cols=105 Identities=15% Similarity=0.279 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCcc--cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccccc-----CC-CCC-------CCEEEEEcch
Q 016578 159 PSPKTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-----VG-FED-------PRVRLHIGDA 223 (387)
Q Consensus 159 ~~p~~VL~IG~G~--G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~-----~~-~~d-------~rv~v~~gD~ 223 (387)
++-++|-+||+|. ++++..+++.+ -.|++.|.+++.++.+++++...- .+ +.. .+++.. .|.
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 81 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL 81 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 3456899999994 44666666663 589999999999998765543210 01 110 134433 232
Q ss_pred hhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 224 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 224 ~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
. .. ..-|+||-..++.... ...+|..+.+.++++.++++++.+
T Consensus 82 ~----~~--~~aDlViEav~E~~~v-----K~~vf~~l~~~~~~~ailasntSt 124 (507)
T PRK08268 82 A----DL--ADCDLVVEAIVERLDV-----KQALFAQLEAIVSPDCILATNTSS 124 (507)
T ss_pred H----Hh--CCCCEEEEcCcccHHH-----HHHHHHHHHhhCCCCcEEEECCCC
Confidence 2 22 2589999766553322 456778888888898888766543
No 405
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=85.07 E-value=2.7 Score=41.35 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=44.9
Q ss_pred EEEEcCcccHHHHHHHhc---CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEE----EEcchhhHH--hh-CCCC
Q 016578 164 VLVVGGGDGGVLREISRH---DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRL----HIGDAVEFL--RQ-VPRG 233 (387)
Q Consensus 164 VL~IG~G~G~~~~el~k~---~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v----~~gD~~~~l--~~-~~~~ 233 (387)
||+-| |+|.++.++.++ ....+++++|.|+.-+-..++.+... +.++++++ +.+|.++.- .. ....
T Consensus 1 VLVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~---~~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSR---FPDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHH---C--TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhc---ccccCcccccCceeecccCHHHHHHHHhhc
Confidence 56666 558888887764 23479999999999888888777322 12345544 588987642 22 2345
Q ss_pred CeeEEEEcCCC
Q 016578 234 KYDAIIVDSSD 244 (387)
Q Consensus 234 ~fDvII~D~~d 244 (387)
+.|+|+.-+..
T Consensus 77 ~pdiVfHaAA~ 87 (293)
T PF02719_consen 77 KPDIVFHAAAL 87 (293)
T ss_dssp T-SEEEE----
T ss_pred CCCEEEEChhc
Confidence 89999976654
No 406
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=85.02 E-value=8.3 Score=38.77 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
+...+|.++|+|. |..+..-++.....+|++||++++-.++|+++=... .++..... |..+.+.+..+.--|.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~--~vn~~~~~----~vv~~i~~~T~gG~d~ 257 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATH--FVNPKEVD----DVVEAIVELTDGGADY 257 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCce--eecchhhh----hHHHHHHHhcCCCCCE
Confidence 3456888888775 555555566667789999999999999999973221 01111111 6666666654446776
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.| |.. + ..+.++...+++.++|..++..
T Consensus 258 ~~-e~~---G------~~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 258 AF-ECV---G------NVEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred EE-Ecc---C------CHHHHHHHHHHHhcCCeEEEEe
Confidence 64 222 1 2347888888999999877643
No 407
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=84.94 E-value=19 Score=32.32 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=54.2
Q ss_pred CCCEEEEEcCcccHHHHHHH---hcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 160 SPKTVLVVGGGDGGVLREIS---RHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~---k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
..++|.+||.| .++++++ +..+ .+|.++|.++......... .+ ...+..+.++ +.|
T Consensus 35 ~g~tvgIiG~G--~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~-----~aD 93 (178)
T PF02826_consen 35 RGKTVGIIGYG--RIGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLA-----QAD 93 (178)
T ss_dssp TTSEEEEESTS--HHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHH-----H-S
T ss_pred CCCEEEEEEEc--CCcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcc-----hhh
Confidence 57799999986 3444444 4443 5999999988865522221 12 2235555553 588
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|++..+... ....++..++|+ .|++|.+|+.-+
T Consensus 94 iv~~~~plt~-~T~~li~~~~l~----~mk~ga~lvN~a 127 (178)
T PF02826_consen 94 IVSLHLPLTP-ETRGLINAEFLA----KMKPGAVLVNVA 127 (178)
T ss_dssp EEEE-SSSST-TTTTSBSHHHHH----TSTTTEEEEESS
T ss_pred hhhhhhcccc-ccceeeeeeeee----ccccceEEEecc
Confidence 9998766321 134567776665 688888888654
No 408
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=84.91 E-value=8.2 Score=37.20 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=60.4
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 159 PSPKTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~--G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
....+||+.|+ +.|..+..+++..+ .+|++++.++.-.+.+++.+.. +.-+.....|..+.+.....+.+|
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~v~~~~~~~~d 216 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAGSDEKCRWLVEELGF------DAAINYKTPDLAEALKEAAPDGID 216 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhhcCC------ceEEecCChhHHHHHHHhccCCce
Confidence 34579999984 56777777788765 4799999888888877764431 111111111222223222234699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+|+ |... . ..++...+.|+++|.++..
T Consensus 217 ~vi-~~~g---~-------~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 217 VYF-DNVG---G-------EILDAALTLLNKGGRIALC 243 (329)
T ss_pred EEE-Ecch---H-------HHHHHHHHhcCCCceEEEE
Confidence 887 3321 1 2567788899999998854
No 409
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=84.85 E-value=1.4 Score=43.60 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=62.1
Q ss_pred CEEEEEcCcccHHHHHHHhcC--------------------CCceEEEEeCC--HHHHHHHHhhccccc-----------
Q 016578 162 KTVLVVGGGDGGVLREISRHD--------------------SVELIDICEID--KMVIDVSKKYFPELA----------- 208 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~--------------------~~~~Vt~VEiD--~~vi~~ar~~~~~~~----------- 208 (387)
.+||.||||.|+-...++... +..+|++|||- ..|++.....+....
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 599999999987655554322 01389999995 467777766654330
Q ss_pred --CCCCCCCEEEEEcchhhHHhhC-----CCCCeeEEEEcCCCCCCCccccc------hHHHHHHHHHhccCCCeEEe
Q 016578 209 --VGFEDPRVRLHIGDAVEFLRQV-----PRGKYDAIIVDSSDPVGPAQELV------EKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 209 --~~~~d~rv~v~~gD~~~~l~~~-----~~~~fDvII~D~~dp~~~~~~L~------~~ef~~~l~~~LkpgGvlv~ 273 (387)
..-+.-+++|.+.|+...-.+. .....|+|-+-.+ .++|| +..|+..+-..++||-+|.+
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFT-----lNELfs~s~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFT-----LNELFSTSISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHH-----HHHHHhcChHHHHHHHHHHHhhcCCCcEEEE
Confidence 0011235677778876532210 0012333321111 22333 35799999999999998765
No 410
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=84.82 E-value=9.4 Score=37.29 Aligned_cols=109 Identities=16% Similarity=0.233 Sum_probs=66.1
Q ss_pred CEEEEEcCc--ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 162 KTVLVVGGG--DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 162 ~~VL~IG~G--~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
.+|+++|.| .|.+++.+.+......|++.|.+....+.+.+. . ..+.. . .+.. . .. ....|+||
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-g-----v~d~~---~-~~~~--~-~~-~~~aD~Vi 69 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-G-----VIDEL---T-VAGL--A-EA-AAEADLVI 69 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-C-----ccccc---c-cchh--h-hh-cccCCEEE
Confidence 589999988 566667776666556788888888777766542 1 11110 0 1110 1 11 34689999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHHHHHHcCC
Q 016578 240 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKG 298 (387)
Q Consensus 240 ~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~l~~~F~~ 298 (387)
+..+ ... +.++++.+...|++|.+++=.+ | .-..+++.+++..+.
T Consensus 70 vavP--i~~-----~~~~l~~l~~~l~~g~iv~Dv~-S------~K~~v~~a~~~~~~~ 114 (279)
T COG0287 70 VAVP--IEA-----TEEVLKELAPHLKKGAIVTDVG-S------VKSSVVEAMEKYLPG 114 (279)
T ss_pred Eecc--HHH-----HHHHHHHhcccCCCCCEEEecc-c------ccHHHHHHHHHhccC
Confidence 7654 222 5568888888889888776322 2 224556666666654
No 411
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=84.80 E-value=4.7 Score=43.05 Aligned_cols=81 Identities=27% Similarity=0.354 Sum_probs=58.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhc---CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHh--h-CCCC
Q 016578 160 SPKTVLVVGGGDGGVLREISRH---DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLR--Q-VPRG 233 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~---~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~--~-~~~~ 233 (387)
..++||+-|+| |+++.++.++ ...+++...|.|+.-+..-++.+... +.+.++.++.+|.++.-+ . ..+-
T Consensus 249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence 46788887755 7787776553 24589999999999888877776542 235789999999987521 1 1344
Q ss_pred CeeEEEEcCCC
Q 016578 234 KYDAIIVDSSD 244 (387)
Q Consensus 234 ~fDvII~D~~d 244 (387)
+.|+|+..+..
T Consensus 325 kvd~VfHAAA~ 335 (588)
T COG1086 325 KVDIVFHAAAL 335 (588)
T ss_pred CCceEEEhhhh
Confidence 79999987654
No 412
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.72 E-value=1.4 Score=40.81 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=44.3
Q ss_pred CCCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 158 IPSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 158 ~~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
.+.+++||++|.- +|....+++.. ..+|+++||.|.+ |.++| +++++... +.+ ..+.||
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~----r~~lp--------~~v~Fr~~--~~~----~~G~~D 101 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFM----RGFLP--------NNVKFRNL--LKF----IRGEVD 101 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHH----HhcCC--------CCccHhhh--cCC----CCCcee
Confidence 4678999999975 67777777654 3699999999976 44454 34554432 222 356899
Q ss_pred EEEEcCCC
Q 016578 237 AIIVDSSD 244 (387)
Q Consensus 237 vII~D~~d 244 (387)
+|+ |.+.
T Consensus 102 liv-DlTG 108 (254)
T COG4017 102 LIV-DLTG 108 (254)
T ss_pred EEE-eccc
Confidence 876 4443
No 413
>PRK07340 ornithine cyclodeaminase; Validated
Probab=84.33 E-value=17 Score=35.80 Aligned_cols=114 Identities=13% Similarity=0.092 Sum_probs=61.7
Q ss_pred eeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHH--HHHHhcCCCceEEEEeCC
Q 016578 116 QEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVL--REISRHDSVELIDICEID 193 (387)
Q Consensus 116 q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~--~el~k~~~~~~Vt~VEiD 193 (387)
..+.+++..+..-.-++||..-..-|--..---...++ ..+++++|++||+|.=+-. ..++...+.++|.+.+.+
T Consensus 83 g~i~l~d~~tG~p~a~~d~~~lT~~RTaA~sala~~~L---a~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~ 159 (304)
T PRK07340 83 GEVVVADAATGERLFLLDGPTVTGRRTAAVSLLAARTL---APAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT 159 (304)
T ss_pred EEEEEEECCCCcEEEEEcChhHHHHHHHHHHHHHHHHh---CCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 45666666543334566776544333221111111222 2357789999999743322 222233456899999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCC
Q 016578 194 KMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD 244 (387)
Q Consensus 194 ~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~d 244 (387)
++-.+...+.+... .+.+...|..+-+ ...|+|++-.+.
T Consensus 160 ~~~a~~~a~~~~~~-------~~~~~~~~~~~av-----~~aDiVitaT~s 198 (304)
T PRK07340 160 AASAAAFCAHARAL-------GPTAEPLDGEAIP-----EAVDLVVTATTS 198 (304)
T ss_pred HHHHHHHHHHHHhc-------CCeeEECCHHHHh-----hcCCEEEEccCC
Confidence 87666555544321 1233345554443 369999976543
No 414
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.31 E-value=2.7 Score=42.17 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=23.7
Q ss_pred CCCEEEEEcCcc-cH-HHHHHHhcCCCceEEEEeCCH
Q 016578 160 SPKTVLVVGGGD-GG-VLREISRHDSVELIDICEIDK 194 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~-~~~el~k~~~~~~Vt~VEiD~ 194 (387)
...+||+||+|. |. ++..|++. ++.+++.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 356899999983 33 33344444 688999999873
No 415
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.28 E-value=11 Score=36.80 Aligned_cols=100 Identities=22% Similarity=0.278 Sum_probs=57.0
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+..+||+.|+|. |..+..+++..+..+|++++-+++-.+.++++ .. +.-+.....+.....+....+.+|+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~vd~ 234 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GA------DVVINPREEDVVEVKSVTDGTGVDV 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Cc------ceeeCcccccHHHHHHHcCCCCCCE
Confidence 4567899976543 44555667776544788887777777766653 21 1111111222221112223357998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+-... ..+..+.+.+.|+++|.++...
T Consensus 235 vld~~g----------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 235 VLEMSG----------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEECCC----------CHHHHHHHHHHhccCCEEEEEc
Confidence 884331 1235677888999999988643
No 416
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=84.27 E-value=9.4 Score=35.87 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+.++||+.|+|. |..+..+++..+..+|++++.+++-.+.++++- .. +.-+.. .+ ... ....+|+
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g-~~-----~~~~~~--~~--~~~---~~~~~d~ 162 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG-PA-----DPVAAD--TA--DEI---GGRGADV 162 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC-CC-----cccccc--ch--hhh---cCCCCCE
Confidence 4567999998654 556666777765545999999988888777642 00 100100 00 111 2346998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+..... ....+...+.|+++|.++...
T Consensus 163 vl~~~~~----------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEASGS----------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEccCC----------hHHHHHHHHHhcCCcEEEEEe
Confidence 8843221 135678888999999998643
No 417
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.05 E-value=13 Score=31.95 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=46.5
Q ss_pred CEEEEEcCcccHHHHHHHhc---CCCceEEEEeCC--HHHHHHHHhhcccccCCCCCCCEEEEEcchhhH------HhhC
Q 016578 162 KTVLVVGGGDGGVLREISRH---DSVELIDICEID--KMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQV 230 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~---~~~~~Vt~VEiD--~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~------l~~~ 230 (387)
|.||+.|++ ++++++++++ .+..+|+.+.-+ .+..+...+.++.. ..++.++..|..+. ++..
T Consensus 1 k~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP-----GAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT-----TSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc-----cccccccccccccccccccccccc
Confidence 367888866 5577776654 234688888888 44444333334322 36888888886421 2111
Q ss_pred --CCCCeeEEEEcCCC
Q 016578 231 --PRGKYDAIIVDSSD 244 (387)
Q Consensus 231 --~~~~fDvII~D~~d 244 (387)
..+..|++|.....
T Consensus 75 ~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 75 IKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHSSESEEEEECSC
T ss_pred cccccccccccccccc
Confidence 13579999977654
No 418
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.92 E-value=11 Score=38.30 Aligned_cols=107 Identities=10% Similarity=0.156 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE---cchhhHHhhC-CCC
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI---GDAVEFLRQV-PRG 233 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~---gD~~~~l~~~-~~~ 233 (387)
...++||+.|+| -|..+..+++..+...|+++|.+++-.+.+++. .. + .+.. .|..+.+.+. ...
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga------~---~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GC------E---TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CC------e---EEecCCcccHHHHHHHHcCCC
Confidence 456789997765 344455677776666677789999888888874 21 1 1211 1233333332 234
Q ss_pred CeeEEEEcCCCCCC--Cc--cccchHHHHHHHHHhccCCCeEEecc
Q 016578 234 KYDAIIVDSSDPVG--PA--QELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 234 ~fDvII~D~~dp~~--~~--~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.+|+||--...+.. .. ..--....++...+.++++|.+++..
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 69988743322110 00 00001136788889999999998643
No 419
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.92 E-value=13 Score=38.15 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=74.2
Q ss_pred CEEEEEcCcccHHHHHHHh---cCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH--HhhCCCCCee
Q 016578 162 KTVLVVGGGDGGVLREISR---HDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--LRQVPRGKYD 236 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k---~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~--l~~~~~~~fD 236 (387)
++||+|||| .+++.++. +....+|++.|-+++-.+.+.... +++++.+.-|+.+. +.+. -..+|
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~l-i~~~d 70 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVAL-IKDFD 70 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHH-HhcCC
Confidence 589999994 44444332 234479999999988777766543 34788888887654 2222 13469
Q ss_pred EEEEcCCCCCCCc-------------cccchHHHHHHHHHhccCCCeEEecccccchhhhHHHHHHHH-HHHHcC--CCc
Q 016578 237 AIIVDSSDPVGPA-------------QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISI-CRETFK--GSV 300 (387)
Q Consensus 237 vII~D~~dp~~~~-------------~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~~~~~~~~~-l~~~F~--~~v 300 (387)
++|.-.+...... .--+..+....+...-+..|+.++.. .-+++.+..-+... .++.|. ..+
T Consensus 71 ~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~--~G~dPGi~nv~a~~a~~~~~~~i~si 148 (389)
T COG1748 71 LVINAAPPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLG--CGFDPGITNVLAAYAAKELFDEIESI 148 (389)
T ss_pred EEEEeCCchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcc--cCcCcchHHHHHHHHHHHhhccccEE
Confidence 9986554322110 00011122244455555667655432 12333333333333 344552 234
Q ss_pred ceEEEEeeccCCC
Q 016578 301 HYAWASVPTYPSG 313 (387)
Q Consensus 301 ~~~~~~iPtyp~g 313 (387)
..+....|.++.+
T Consensus 149 ~iy~g~~g~~~~~ 161 (389)
T COG1748 149 DIYVGGLGEHGDN 161 (389)
T ss_pred EEEEecCCCCCCC
Confidence 5555667777633
No 420
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=83.81 E-value=11 Score=36.76 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCee
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fD 236 (387)
.+.++||+.|+| .|..+..+++..+...|++++-++.-.+.+++.-. +.-+.....+..+-+.+. ..+.+|
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~v~~~~~~~~~~l~~~~~~~~~d 232 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA-------TYVVNPFKEDVVKEVADLTDGEGVD 232 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------cEEEcccccCHHHHHHHhcCCCCCC
Confidence 456788886653 34455556776655458888888887777765311 111112223333333322 234699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|+-... ..+.+..+.+.|+++|.++...
T Consensus 233 ~vld~~g----------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 233 VFLEMSG----------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEEECCC----------CHHHHHHHHHhhcCCCEEEEEc
Confidence 8885321 1235778889999999988643
No 421
>PRK06949 short chain dehydrogenase; Provisional
Probab=83.80 E-value=19 Score=33.35 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=47.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH------HhhC-
Q 016578 160 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQV- 230 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~------l~~~- 230 (387)
..++||+.| |+|++++.+++.. ...+|++++.+++-++...+.+... ..+++++..|..+. +.+.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-----GGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 357888888 4556666665431 1347999999988766555544322 23677887776421 1111
Q ss_pred -CCCCeeEEEEcCC
Q 016578 231 -PRGKYDAIIVDSS 243 (387)
Q Consensus 231 -~~~~fDvII~D~~ 243 (387)
.-+..|+||....
T Consensus 82 ~~~~~~d~li~~ag 95 (258)
T PRK06949 82 TEAGTIDILVNNSG 95 (258)
T ss_pred HhcCCCCEEEECCC
Confidence 1246899997654
No 422
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=83.60 E-value=18 Score=37.53 Aligned_cols=87 Identities=22% Similarity=0.249 Sum_probs=51.2
Q ss_pred CCCEEEEEcCcccH-HHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGGDGG-VLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G~G~-~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..++|+++|+|.-+ .....++..+ .+|+++|+|+.-...+... + .++ .+..+.+ +..|+|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~------G-----~~v--~~l~eal-----~~aDVV 271 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD------G-----FRV--MTMEEAA-----ELGDIF 271 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc------C-----CEe--cCHHHHH-----hCCCEE
Confidence 56799999998533 2333344444 4899999998754443321 1 111 1222222 258988
Q ss_pred EEcCCCCCCCccccchHHHHH-HHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFD-TIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~-~l~~~LkpgGvlv~q~ 275 (387)
|.... +...+. ...+.+++|++++..+
T Consensus 272 I~aTG----------~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 272 VTATG----------NKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred EECCC----------CHHHHHHHHHhcCCCCCEEEEcC
Confidence 85331 123444 5677899999988643
No 423
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.40 E-value=15 Score=36.20 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=55.1
Q ss_pred EEEEEcCcc-cHHHHH-HHhcCCCceEEEEeCCHHHHH-HHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 163 TVLVVGGGD-GGVLRE-ISRHDSVELIDICEIDKMVID-VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 163 ~VL~IG~G~-G~~~~e-l~k~~~~~~Vt~VEiD~~vi~-~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
+|.+||+|. |..... ++..+...+|+.+|++++..+ .+.... ... .+. +...+..+|.. .. ...|+||
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~-~~~-~~~-~~~~i~~~d~~----~l--~~aDiVi 72 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLA-HGT-PFV-KPVRIYAGDYA----DC--KGADVVV 72 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHH-ccc-ccc-CCeEEeeCCHH----Hh--CCCCEEE
Confidence 689999985 333333 344443468999999987654 222221 110 112 23455555532 22 3579999
Q ss_pred EcCCCCCCCccccc-----hHHHHHHHHHh---ccCCCeEEec
Q 016578 240 VDSSDPVGPAQELV-----EKPFFDTIAKA---LRPGGVLCNM 274 (387)
Q Consensus 240 ~D~~dp~~~~~~L~-----~~ef~~~l~~~---LkpgGvlv~q 274 (387)
+....+..+....+ +...++.+.+. ..|+|++++-
T Consensus 73 ita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~ 115 (308)
T cd05292 73 ITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115 (308)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 87766554422211 22334333332 4588988764
No 424
>PRK10083 putative oxidoreductase; Provisional
Probab=82.93 E-value=11 Score=36.54 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=57.0
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhc-CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~-~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
...++||+.|+|. |..+..+++. .+...|++++.+++-.++++++-.. .-+.....+..+.+... ...+|
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~~~-g~~~d 230 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGAD-------WVINNAQEPLGEALEEK-GIKPT 230 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCc-------EEecCccccHHHHHhcC-CCCCC
Confidence 4567999998542 3333445663 3566788999999988888775221 11111112333333221 22355
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|| |... ....++...+.|+++|.++...
T Consensus 231 ~vi-d~~g---------~~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 231 LII-DAAC---------HPSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred EEE-ECCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 665 3321 1135778889999999998643
No 425
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=82.92 E-value=2.9 Score=42.18 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=41.1
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhcC--------CCceEEEEeCCHHHHHHHHhhcccc
Q 016578 158 IPSPKTVLVVGGGDGGVLREISRHD--------SVELIDICEIDKMVIDVSKKYFPEL 207 (387)
Q Consensus 158 ~~~p~~VL~IG~G~G~~~~el~k~~--------~~~~Vt~VEiD~~vi~~ar~~~~~~ 207 (387)
.|.|-.+++||.|.|.+++-+++.. ...++..||++++..+.=|+.+...
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3667799999999999999887642 3568999999999999888877644
No 426
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=82.65 E-value=19 Score=35.71 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=42.1
Q ss_pred CCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhccccc-CCCCCCCEEEEE-cchhhHHhhCCCCCeeE
Q 016578 161 PKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-VGFEDPRVRLHI-GDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 161 p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~-~~~~d~rv~v~~-gD~~~~l~~~~~~~fDv 237 (387)
..+|.+||+|. |.....++...+...++.+|++++..+ ++. +...+ ..+.+...++.. +|.. .. ..-|+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~~-ld~~~~~~~~~~~~~I~~~~d~~----~l--~~aDi 77 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GKA-LDISHSNVIAGSNSKVIGTNNYE----DI--AGSDV 77 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HHH-HHHHhhhhccCCCeEEEECCCHH----Hh--CCCCE
Confidence 46999999987 444444444444456999999998532 111 11000 011233456664 6632 22 24799
Q ss_pred EEEcCCCC
Q 016578 238 IIVDSSDP 245 (387)
Q Consensus 238 II~D~~dp 245 (387)
||.....+
T Consensus 78 VI~tag~~ 85 (321)
T PTZ00082 78 VIVTAGLT 85 (321)
T ss_pred EEECCCCC
Confidence 99755433
No 427
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.49 E-value=14 Score=36.59 Aligned_cols=105 Identities=14% Similarity=0.285 Sum_probs=56.7
Q ss_pred EEEEEcCcc-cHHHHH-HHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCC-CCEEEEEcchhhHHhhCCCCCeeEEE
Q 016578 163 TVLVVGGGD-GGVLRE-ISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED-PRVRLHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 163 ~VL~IG~G~-G~~~~e-l~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d-~rv~v~~gD~~~~l~~~~~~~fDvII 239 (387)
+|-+||+|. |..... ++...-..+++.+|++++..+--..-+.+. ..+.. .++++..+|..+ . ..-|+||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y~~----~--~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDYDD----C--ADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCHHH----h--CCCCEEE
Confidence 478899986 555534 444444468999999865432221112111 11222 357777777332 2 2488999
Q ss_pred EcCCCCCCCcc-----ccc--hHHHHHHHHHhc---cCCCeEEec
Q 016578 240 VDSSDPVGPAQ-----ELV--EKPFFDTIAKAL---RPGGVLCNM 274 (387)
Q Consensus 240 ~D~~dp~~~~~-----~L~--~~ef~~~l~~~L---kpgGvlv~q 274 (387)
+.+..|..|.. .|+ +.+.++.+...+ .|+|++++.
T Consensus 74 itaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivv 118 (307)
T cd05290 74 ITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILI 118 (307)
T ss_pred ECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 87665544321 222 233444444444 378887753
No 428
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.42 E-value=17 Score=33.75 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH------HhhC-
Q 016578 160 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQV- 230 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~------l~~~- 230 (387)
..++||+.|+ +|++++.++++. ...+|++++.++.-.+...+.+... ..++.++..|..+. +...
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ-----GLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-----CceEEEEEccCCCHHHHHHHHHHHH
Confidence 3568999885 566777766541 2358999999887655444444321 24577777776432 1111
Q ss_pred -CCCCeeEEEEcCCC
Q 016578 231 -PRGKYDAIIVDSSD 244 (387)
Q Consensus 231 -~~~~fDvII~D~~d 244 (387)
.-+..|+||.....
T Consensus 83 ~~~~~~d~li~~ag~ 97 (255)
T PRK07523 83 AEIGPIDILVNNAGM 97 (255)
T ss_pred HhcCCCCEEEECCCC
Confidence 12468999977643
No 429
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.30 E-value=23 Score=35.07 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCEEEEEcCcc-cHHHHH-HHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE-cchhhHHhhCCCCCeeE
Q 016578 161 PKTVLVVGGGD-GGVLRE-ISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 161 p~~VL~IG~G~-G~~~~e-l~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~-gD~~~~l~~~~~~~fDv 237 (387)
..+|.+||+|. |..... ++...-..+++.+|++++..+--..-+.+.. .+... .++.. +|..+ + ..-|+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~-~~v~~~~dy~~-~-----~~adi 74 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS-AFLKN-PKIEADKDYSV-T-----ANSKV 74 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh-ccCCC-CEEEECCCHHH-h-----CCCCE
Confidence 45999999864 332222 3344445689999998764432222222211 12222 25554 66443 2 24799
Q ss_pred EEEcCCCCCCCc---cccch------HHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPA---QELVE------KPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~---~~L~~------~ef~~~l~~~LkpgGvlv~q~ 275 (387)
||+....+..+. ..|+. +++.+.+.+. .|+|++++.+
T Consensus 75 vvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 120 (312)
T cd05293 75 VIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS 120 (312)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence 998654443331 11221 2344455555 7899887644
No 430
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=81.96 E-value=17 Score=35.22 Aligned_cols=98 Identities=15% Similarity=0.245 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE-cchhhHHhhCCCCCee
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~-gD~~~~l~~~~~~~fD 236 (387)
....+||+.|+| -|..+..++++....+|++++-+++-.+.++++ .. +.-+.... .+..+.+.+... .+|
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~-g~------~~v~~~~~~~~~~~~v~~~~~-~~d 232 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GA------DLTINSKRVEDVAKIIQEKTG-GAH 232 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc-CC------cEEecccccccHHHHHHHhcC-CCc
Confidence 456799999853 344555566652135899999999988888653 21 10111111 222333433323 588
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+++.+... .+.++.+.+.|+++|.++..
T Consensus 233 ~vi~~~~~----------~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 233 AAVVTAVA----------KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred EEEEeCCC----------HHHHHHHHHhccCCCEEEEE
Confidence 66665432 24678889999999998854
No 431
>PTZ00117 malate dehydrogenase; Provisional
Probab=81.96 E-value=15 Score=36.47 Aligned_cols=105 Identities=11% Similarity=0.224 Sum_probs=56.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhh-cccccCCCCCCCEEEEE-cchhhHHhhCCCCCee
Q 016578 160 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKY-FPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYD 236 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~-~~~~~~~~~d~rv~v~~-gD~~~~l~~~~~~~fD 236 (387)
+..+|.+||+|. |.....++...+...++.+|++++..+ +... +... ..+.....++.. .|... + ..-|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~~-l-----~~AD 75 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYED-I-----KDSD 75 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHHH-h-----CCCC
Confidence 455899999988 766666555444457999999986544 2221 1111 111222345553 45332 2 2368
Q ss_pred EEEEcCCCCCCCcc---cc------chHHHHHHHHHhccCCCeEEe
Q 016578 237 AIIVDSSDPVGPAQ---EL------VEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 237 vII~D~~dp~~~~~---~L------~~~ef~~~l~~~LkpgGvlv~ 273 (387)
+||+....+..+.. .+ .-.++.+.+.+. .|++++++
T Consensus 76 iVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~viv 120 (319)
T PTZ00117 76 VVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVIC 120 (319)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence 88876533332211 11 123455566655 68886664
No 432
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=81.84 E-value=0.23 Score=41.69 Aligned_cols=46 Identities=33% Similarity=0.422 Sum_probs=27.5
Q ss_pred CeeEEEEcCCCCCCCc--cccchHHHHHHHHHhccCCCeEEecccccch
Q 016578 234 KYDAIIVDSSDPVGPA--QELVEKPFFDTIAKALRPGGVLCNMAESMWL 280 (387)
Q Consensus 234 ~fDvII~D~~dp~~~~--~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~ 280 (387)
+||+|++=+-.-|... .+---..||+.+++.|+|||+|++.. .+|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp-Q~w~ 48 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP-QPWK 48 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE----HH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC-CCcH
Confidence 5999997554322110 00112459999999999999999753 3453
No 433
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.76 E-value=18 Score=34.25 Aligned_cols=95 Identities=21% Similarity=0.331 Sum_probs=60.3
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCee
Q 016578 159 PSPKTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~--G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fD 236 (387)
...++||+.|+ +.|..+.++++..+ .+|+++..+++-.+.++++ .- + .+-....+..+.+... .+.+|
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~-g~------~-~~~~~~~~~~~~i~~~-~~~~d 210 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALLKEL-GA------D-EVVIDDGAIAEQLRAA-PGGFD 210 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CC------c-EEEecCccHHHHHHHh-CCCce
Confidence 55689999984 57777788888765 5688888888877777542 21 1 1100112333334333 45799
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+|+-.... ..++.+.+.|+++|.++..
T Consensus 211 ~vl~~~~~-----------~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 211 KVLELVGT-----------ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EEEECCCh-----------HHHHHHHHHhccCCEEEEE
Confidence 88832211 2567778999999999864
No 434
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=81.55 E-value=4.4 Score=38.01 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCH
Q 016578 160 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDK 194 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~ 194 (387)
...+|+++|+|. |......+-..++.+++.+|-|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 356899999873 33333333334688999997654
No 435
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=81.49 E-value=13 Score=36.29 Aligned_cols=99 Identities=15% Similarity=0.309 Sum_probs=58.7
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCeeE
Q 016578 160 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDA 237 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fDv 237 (387)
+.++||+.|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....+..+.+... ..+.+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l-g~------~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM-GA------TRAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CC------cEEecCccccHHHHHHHhcCCCCCCE
Confidence 567899876543 45556677776655788888888777776653 11 101111112222333322 2346898
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+--.. ....++.+.+.|+++|.++...
T Consensus 236 v~d~~g----------~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 236 GLEMSG----------APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEECCC----------CHHHHHHHHHHHhcCCEEEEEe
Confidence 874221 1236778889999999998754
No 436
>PRK07102 short chain dehydrogenase; Provisional
Probab=81.35 E-value=14 Score=34.01 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=44.9
Q ss_pred CEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH------HhhCCCC
Q 016578 162 KTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQVPRG 233 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~------l~~~~~~ 233 (387)
++||+.|+ +|+++..++++. ...+|++++.+++-.+...+.+... ...+++++..|..+. +... ..
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~-~~ 75 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSL-PA 75 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHH-hh
Confidence 47888884 466776665541 2358999999886544333322211 135788888887543 2222 23
Q ss_pred CeeEEEEcC
Q 016578 234 KYDAIIVDS 242 (387)
Q Consensus 234 ~fDvII~D~ 242 (387)
.+|++|...
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 579999764
No 437
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.28 E-value=4.2 Score=41.18 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCC
Q 016578 160 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEID 193 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD 193 (387)
...+||++|+|. |......+...++.+++.+|-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456899999873 4433333334468899999988
No 438
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=81.04 E-value=8.2 Score=40.60 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 158 IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 158 ~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
...-++|+|..+|.|+++..+.+.+ |.+.-.-|. .....++-. ++..=+- +.-|--+-+... +.+||+
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~---~~~ntL~vI---ydRGLIG-~yhDWCE~fsTY-PRTYDL 430 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPV---SGPNTLPVI---YDRGLIG-VYHDWCEAFSTY-PRTYDL 430 (506)
T ss_pred ccceeeeeeecccccHHHHHhccCC----ceEEEeccc---CCCCcchhh---hhcccch-hccchhhccCCC-Ccchhh
Confidence 3456799999999999999998764 333322221 000011110 1100010 111222212222 578999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|-.+.-..... ..---.+.+-++-|.|+|+|.+++.
T Consensus 431 lHA~~lfs~~~-~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 431 LHADGLFSLYK-DRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred eehhhhhhhhc-ccccHHHHHHHhHhhcCCCceEEEe
Confidence 98764321111 1112346788999999999999874
No 439
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=81.02 E-value=16 Score=33.91 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=46.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH------HhhC-
Q 016578 160 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQV- 230 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~------l~~~- 230 (387)
..++||+.|+ +|++++.++++. ...+|++++.+++.++...+.+... ..++.++..|..+. ++..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA-----GGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence 4568888885 455666655431 1358999999987665554444322 34677888775432 2211
Q ss_pred -CCCCeeEEEEcCC
Q 016578 231 -PRGKYDAIIVDSS 243 (387)
Q Consensus 231 -~~~~fDvII~D~~ 243 (387)
.-++.|+||....
T Consensus 84 ~~~~~id~vi~~ag 97 (256)
T PRK06124 84 AEHGRLDILVNNVG 97 (256)
T ss_pred HhcCCCCEEEECCC
Confidence 1246899997654
No 440
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=80.85 E-value=15 Score=36.18 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=56.5
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcc---hhhHHhhC-CCCC
Q 016578 160 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGD---AVEFLRQV-PRGK 234 (387)
Q Consensus 160 ~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD---~~~~l~~~-~~~~ 234 (387)
..++||+.|+| .|..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....+ ....+.+. ..+.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF-GA------DATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------CeEEcCcccccHHHHHHHHHHhCCCC
Confidence 56789999754 334445567776555899999888877777653 21 1001111111 11122222 2346
Q ss_pred eeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 235 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 235 fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|+|+-... . ...++...+.|+++|.++...
T Consensus 250 ~d~vid~~g----~------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEASG----H------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECCC----C------hHHHHHHHHHhccCCEEEEEc
Confidence 998873221 1 125667788999999998543
No 441
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=80.81 E-value=15 Score=36.45 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=58.1
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh-CCCCCee
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~-~~~~~fD 236 (387)
.+..+||+.|+| .|..+..+++..+...|++++-+++..+.+++. .. +.-+.....+..+-+.. .....+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~-g~------~~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL-GA------THTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------ceEecCCcccHHHHHHHHhCCCCCC
Confidence 346689988654 444555567776655599999888888777553 21 10111111222222222 2235699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|+--... .+..+.+.+.|+++|.++...
T Consensus 259 ~vld~vg~----------~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 259 VVVEALGK----------PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEEeCCC----------HHHHHHHHHHHhcCCEEEEEc
Confidence 99832221 125677888999999988643
No 442
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=80.65 E-value=19 Score=33.49 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=47.3
Q ss_pred CCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH--H----hhC--
Q 016578 161 PKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--L----RQV-- 230 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~--l----~~~-- 230 (387)
.++||+.| |+|+++..++++. ...+|++++-++.-.+...+.+... +.++.++.+|..+. + ...
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-----GIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46788888 5567777766541 1248999999887666555544321 34677788877532 1 110
Q ss_pred CCCCeeEEEEcCC
Q 016578 231 PRGKYDAIIVDSS 243 (387)
Q Consensus 231 ~~~~fDvII~D~~ 243 (387)
..+..|+||....
T Consensus 86 ~~~~id~vi~~ag 98 (259)
T PRK08213 86 RFGHVDILVNNAG 98 (259)
T ss_pred HhCCCCEEEECCC
Confidence 1146899997754
No 443
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.30 E-value=15 Score=37.62 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=46.7
Q ss_pred EEEEEcCcccHHHHHHHhc--CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh--HHhhCCCCCeeEE
Q 016578 163 TVLVVGGGDGGVLREISRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKYDAI 238 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k~--~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~--~l~~~~~~~fDvI 238 (387)
+|+++|+ |.+++.+++. ....+|+++|.|++.++.+++.+ .++++.+|+.+ .+.+..-+.+|.|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~----------~~~~~~gd~~~~~~l~~~~~~~a~~v 69 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL----------DVRTVVGNGSSPDVLREAGAEDADLL 69 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc----------CEEEEEeCCCCHHHHHHcCCCcCCEE
Confidence 6899987 5666666553 12358999999999877765521 46778888754 2333323579988
Q ss_pred EEcCCC
Q 016578 239 IVDSSD 244 (387)
Q Consensus 239 I~D~~d 244 (387)
|+...+
T Consensus 70 i~~~~~ 75 (453)
T PRK09496 70 IAVTDS 75 (453)
T ss_pred EEecCC
Confidence 876544
No 444
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=80.18 E-value=4.6 Score=37.79 Aligned_cols=100 Identities=22% Similarity=0.284 Sum_probs=54.6
Q ss_pred hccccCCCCCCEEEEEcCcccHHHHH--HHhcCCCceEEEE--eCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHH
Q 016578 152 HLPLCSIPSPKTVLVVGGGDGGVLRE--ISRHDSVELIDIC--EIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL 227 (387)
Q Consensus 152 ~l~l~~~~~p~~VL~IG~G~G~~~~e--l~k~~~~~~Vt~V--EiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l 227 (387)
++|+...-..++||++|||+-+.-+. +++.+ .+|+++ |..+++-.+.++ .+++.+. +. |-
T Consensus 3 ~lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~g--a~v~Vvs~~~~~el~~~~~~-----------~~i~~~~-~~--~~ 66 (210)
T COG1648 3 YLPLFLDLEGKKVLVVGGGSVALRKARLLLKAG--ADVTVVSPEFEPELKALIEE-----------GKIKWIE-RE--FD 66 (210)
T ss_pred ccceEEEcCCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEcCCccHHHHHHHHh-----------cCcchhh-cc--cC
Confidence 34554444678999999998776654 34443 556554 333333333222 2333333 22 21
Q ss_pred hhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccccc
Q 016578 228 RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 278 (387)
Q Consensus 228 ~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~ 278 (387)
... ...+++||+...|+ +.-+.+.+..++-++++...+.+
T Consensus 67 ~~~-~~~~~lviaAt~d~----------~ln~~i~~~a~~~~i~vNv~D~p 106 (210)
T COG1648 67 AED-LDDAFLVIAATDDE----------ELNERIAKAARERRILVNVVDDP 106 (210)
T ss_pred hhh-hcCceEEEEeCCCH----------HHHHHHHHHHHHhCCceeccCCc
Confidence 111 12388888876652 34556666666778888665443
No 445
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=79.91 E-value=15 Score=35.97 Aligned_cols=98 Identities=20% Similarity=0.210 Sum_probs=57.7
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 160 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 160 ~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
+..+||+.|+| .|..+..+++..+..+|++++.+++-.+.++++ .. +.-+.....+..+.+.....+.+|+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA-GA------DVVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------cEEecCCCccHHHHHHHHhCCCCcEE
Confidence 45789999754 344555567776666899999988888877553 21 10000011121222222212369988
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+- ... .......+.++|+++|.++..
T Consensus 248 id-~~g---------~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 248 ID-FVN---------NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EE-CCC---------CHHHHHHHHHHhhcCCeEEEE
Confidence 83 321 113577889999999999854
No 446
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.78 E-value=19 Score=33.34 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=45.0
Q ss_pred CEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH--HhhCCCCCeeE
Q 016578 162 KTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--LRQVPRGKYDA 237 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~--l~~~~~~~fDv 237 (387)
++||+.|++ |++++.++++. ...+|+++..++.-.+..+...... ..++.++.+|..+. +........|+
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~id~ 76 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR-----GLALRVEKLDLTDAIDRAQAAEWDVDV 76 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCcceEEEeeCCCHHHHHHHhcCCCCE
Confidence 478888864 56666665431 2357888888776554444333221 24578888887543 22211347999
Q ss_pred EEEcCC
Q 016578 238 IIVDSS 243 (387)
Q Consensus 238 II~D~~ 243 (387)
||.+..
T Consensus 77 vi~~ag 82 (257)
T PRK09291 77 LLNNAG 82 (257)
T ss_pred EEECCC
Confidence 998754
No 447
>PRK08267 short chain dehydrogenase; Provisional
Probab=79.76 E-value=17 Score=33.79 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=45.8
Q ss_pred CEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH------HhhCC--
Q 016578 162 KTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQVP-- 231 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~------l~~~~-- 231 (387)
++||++|++ |++++.++++. ...+|++++.+++-++...+.+. ..+++++.+|..+. +....
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-------AGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 468888865 55666655431 13589999998876665544332 24678888887542 11110
Q ss_pred -CCCeeEEEEcCC
Q 016578 232 -RGKYDAIIVDSS 243 (387)
Q Consensus 232 -~~~fDvII~D~~ 243 (387)
.++.|++|....
T Consensus 74 ~~~~id~vi~~ag 86 (260)
T PRK08267 74 TGGRLDVLFNNAG 86 (260)
T ss_pred cCCCCCEEEECCC
Confidence 346899997654
No 448
>PLN02702 L-idonate 5-dehydrogenase
Probab=79.66 E-value=14 Score=36.63 Aligned_cols=100 Identities=25% Similarity=0.257 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEE--EEcchhhHHhh---CCC
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRL--HIGDAVEFLRQ---VPR 232 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v--~~gD~~~~l~~---~~~ 232 (387)
...++||++|+| -|..+..+++..+...|++++.++.-.+.++++-. +..+.+ ...+..+.+.. ...
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGA-------DEIVLVSTNIEDVESEVEEIQKAMG 252 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-------CEEEecCcccccHHHHHHHHhhhcC
Confidence 356799999754 34455666776666678999999888888877421 111111 11233232221 113
Q ss_pred CCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 233 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 233 ~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+.+|+|+--... ...+....+.|+++|.++...
T Consensus 253 ~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 253 GGIDVSFDCVGF----------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEEc
Confidence 469988743211 135778889999999988543
No 449
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=79.52 E-value=50 Score=32.75 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=64.9
Q ss_pred eeEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCcccHHH--HHHHhcCCCceEEEEeCC
Q 016578 116 QEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVL--REISRHDSVELIDICEID 193 (387)
Q Consensus 116 q~I~v~es~~~G~~L~lDG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~--~el~k~~~~~~Vt~VEiD 193 (387)
+.+.+++..+-.-..++||..-..-|--- ..-..+ -.+..++++++.+||+|.=+-. +.++...+..+|.+.+.+
T Consensus 86 g~i~L~d~~tG~p~ai~d~~~lT~~RTaA-~salaa--~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~ 162 (325)
T TIGR02371 86 ALIILVSPETGFPIALMDGTYITDMRTGA-AGGVAA--KYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT 162 (325)
T ss_pred EEEEEeeCCCCCeEEEEeCcchhhHHHHH-HHHHHH--HHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 44666766543344566776544333211 111111 1233567889999998864333 334445567899999999
Q ss_pred HHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCC
Q 016578 194 KMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS 243 (387)
Q Consensus 194 ~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~ 243 (387)
++-.+...+.+... ..++.. ..|..+-+ ..-|+|++-.+
T Consensus 163 ~~~~~~~~~~~~~~-----g~~v~~-~~~~~eav-----~~aDiVitaT~ 201 (325)
T TIGR02371 163 PSTREKFALRASDY-----EVPVRA-ATDPREAV-----EGCDILVTTTP 201 (325)
T ss_pred HHHHHHHHHHHHhh-----CCcEEE-eCCHHHHh-----ccCCEEEEecC
Confidence 98877655554422 123333 35555543 25799997543
No 450
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=79.44 E-value=21 Score=35.20 Aligned_cols=93 Identities=19% Similarity=0.193 Sum_probs=49.0
Q ss_pred CCCEEEEEcCcccH-HHHHHHhcCCCceEEEEeCCHHHH-HHHHhhcccccCCCCCCCEEEEE-cchhhHHhhCCCCCee
Q 016578 160 SPKTVLVVGGGDGG-VLREISRHDSVELIDICEIDKMVI-DVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYD 236 (387)
Q Consensus 160 ~p~~VL~IG~G~G~-~~~el~k~~~~~~Vt~VEiD~~vi-~~ar~~~~~~~~~~~d~rv~v~~-gD~~~~l~~~~~~~fD 236 (387)
..++|++||+|.=+ .....++..+..+|++++.+++-. ++++++ + . .++. .|..+.+ ..+|
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g-------~---~~~~~~~~~~~l-----~~aD 240 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-G-------G---NAVPLDELLELL-----NEAD 240 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-C-------C---eEEeHHHHHHHH-----hcCC
Confidence 46799999986422 222223333457899999998744 555543 2 1 1222 2222222 3589
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+||.-.+.+.. .+.++.+.+....++.+++..
T Consensus 241 vVi~at~~~~~-------~~~~~~~~~~~~~~~~~viDl 272 (311)
T cd05213 241 VVISATGAPHY-------AKIVERAMKKRSGKPRLIVDL 272 (311)
T ss_pred EEEECCCCCch-------HHHHHHHHhhCCCCCeEEEEe
Confidence 99976554321 223444433333356666544
No 451
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=79.33 E-value=8.6 Score=32.97 Aligned_cols=31 Identities=32% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEcCc-ccH-HHHHHHhcCCCceEEEEeCCH
Q 016578 163 TVLVVGGG-DGG-VLREISRHDSVELIDICEIDK 194 (387)
Q Consensus 163 ~VL~IG~G-~G~-~~~el~k~~~~~~Vt~VEiD~ 194 (387)
+||++|+| .|. ++..|++ .++.+++.+|-|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR-SGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCC
Confidence 58999987 233 2333444 4578999999873
No 452
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=79.28 E-value=20 Score=32.97 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=46.1
Q ss_pred CEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH---------HhhC
Q 016578 162 KTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF---------LRQV 230 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~---------l~~~ 230 (387)
++||+.| |+|.+++.+++.. ...+|++++.++...+.....+... ..++.++.+|..+. +.+.
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA-----GGSVIYLVADVTKEDEIADMIAAAAAE 75 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 4678887 5577777776542 1248999999887665554443221 24678888877542 1111
Q ss_pred CCCCeeEEEEcCC
Q 016578 231 PRGKYDAIIVDSS 243 (387)
Q Consensus 231 ~~~~fDvII~D~~ 243 (387)
....|+||....
T Consensus 76 -~~~~d~vi~~a~ 87 (255)
T TIGR01963 76 -FGGLDILVNNAG 87 (255)
T ss_pred -cCCCCEEEECCC
Confidence 245899997654
No 453
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=79.24 E-value=17 Score=33.60 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCCEEEEEcCcc-cH-HHHHHHhcCCCceEEEEeCC
Q 016578 160 SPKTVLVVGGGD-GG-VLREISRHDSVELIDICEID 193 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~-~~~el~k~~~~~~Vt~VEiD 193 (387)
...+|+++|+|. |. ++..+++. ++.+++.+|.|
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 356899999874 33 33444444 57899999998
No 454
>PRK06223 malate dehydrogenase; Reviewed
Probab=79.14 E-value=24 Score=34.41 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=53.5
Q ss_pred CEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE-cchhhHHhhCCCCCeeEEE
Q 016578 162 KTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 162 ~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~-gD~~~~l~~~~~~~fDvII 239 (387)
.+|-+||+|. |......+...+..+|+.+|++++..+-...-+.... .......++.. .|.. .. ..-|+||
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~~----~~--~~aDiVi 75 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA-PVEGFDTKITGTNDYE----DI--AGSDVVV 75 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh-hhcCCCcEEEeCCCHH----HH--CCCCEEE
Confidence 4899999987 6555554443221289999998876532111111110 01111234442 4432 22 2478899
Q ss_pred EcCCCCCCCccc---------cchHHHHHHHHHhccCCCeEEec
Q 016578 240 VDSSDPVGPAQE---------LVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 240 ~D~~dp~~~~~~---------L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+....|..+... -.-.++++.+.+.. |++++++.
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~ 118 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVV 118 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 765544433211 11234555555544 77876653
No 455
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=79.04 E-value=4.9 Score=38.23 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=24.6
Q ss_pred CCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHH
Q 016578 161 PKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKM 195 (387)
Q Consensus 161 p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~ 195 (387)
..+||++|+| .|......+...++.+++.+|-|..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 4689999977 4554444444456899999987643
No 456
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=79.00 E-value=11 Score=29.76 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=50.7
Q ss_pred EEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhcc
Q 016578 187 IDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALR 266 (387)
Q Consensus 187 Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~Lk 266 (387)
|..||-++...+..++.+... +-..-....|+.+.+.......||+|++|...+... ..++++.+++.-
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~-----~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~-----~~~~~~~i~~~~- 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERA-----GYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGD-----GLELLEQIRQIN- 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSB-----HHHHHHHHHHHT-
T ss_pred cEEEECCHHHHHHHHHHHHhC-----CCCEEEEECCHHHHHHHhcccCceEEEEEeeecccc-----cccccccccccc-
Confidence 567899999999999988732 111223455665555433345799999997655433 346788887665
Q ss_pred CCCeEEecc
Q 016578 267 PGGVLCNMA 275 (387)
Q Consensus 267 pgGvlv~q~ 275 (387)
++..+++.+
T Consensus 70 ~~~~ii~~t 78 (112)
T PF00072_consen 70 PSIPIIVVT 78 (112)
T ss_dssp TTSEEEEEE
T ss_pred ccccEEEec
Confidence 666665433
No 457
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=78.81 E-value=8.6 Score=39.86 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=25.2
Q ss_pred CCEEEEEcCcccHHHHHHHhc---CCCceEEEEeCCH
Q 016578 161 PKTVLVVGGGDGGVLREISRH---DSVELIDICEIDK 194 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~---~~~~~Vt~VEiD~ 194 (387)
..+||+||+| +++.|++|. +++.+++.||-+.
T Consensus 20 ~s~VlliG~g--glGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 20 SAHVCLLNAT--ATGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hCeEEEEcCc--HHHHHHHHHHHHcCCCeEEEECCCc
Confidence 4589999877 477787774 6788999999663
No 458
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.62 E-value=18 Score=34.43 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCC-HHHHHHHHhh-cccccCCC-CCCCEEEEEcchhhHHhhCCCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHD--SVELIDICEID-KMVIDVSKKY-FPELAVGF-EDPRVRLHIGDAVEFLRQVPRG 233 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD-~~vi~~ar~~-~~~~~~~~-~d~rv~v~~gD~~~~l~~~~~~ 233 (387)
..++.||+.||..|+++.++++.. ....|.++--. +.|.+++.++ +.-..... ++..|.- ...+++..+++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~----v~~evr~~~~G 80 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVT----VSGEVRANPDG 80 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHH----HHHHHhhCCCC
Confidence 568899999999999999988742 33567665443 3455666443 11110111 1111111 12234454678
Q ss_pred CeeEEEEcCCC
Q 016578 234 KYDAIIVDSSD 244 (387)
Q Consensus 234 ~fDvII~D~~d 244 (387)
+.|+.+.++-.
T Consensus 81 kld~L~NNAG~ 91 (289)
T KOG1209|consen 81 KLDLLYNNAGQ 91 (289)
T ss_pred ceEEEEcCCCC
Confidence 99999977543
No 459
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=78.61 E-value=17 Score=34.20 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=41.6
Q ss_pred cCCCCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccc
Q 016578 156 CSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL 207 (387)
Q Consensus 156 ~~~~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~ 207 (387)
+.+..|-+.|+.|.|-.......+.|. .+-+.+|=|+..+..+++..|.+
T Consensus 35 L~~raPCN~LVFGLghdsllW~aLN~g--GrTvFLEEd~~~i~~~~~~~p~l 84 (225)
T TIGR01627 35 LTRRSPCNILVFGLAHQYLMWSSLNHR--GRTVFIEEEKIMIAKAEVNPPNT 84 (225)
T ss_pred HHhcCCceEEEeccCcchHHHHHhcCC--CeeEEecCCHHHHHHHhhcCCcc
Confidence 335677899999999999988888876 46788999999999998877754
No 460
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=78.56 E-value=14 Score=38.33 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=28.3
Q ss_pred EEEEEcCcccHHHHHHHh----c---CCCceEEEEeCCHHHHHHHHh
Q 016578 163 TVLVVGGGDGGVLREISR----H---DSVELIDICEIDKMVIDVSKK 202 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k----~---~~~~~Vt~VEiD~~vi~~ar~ 202 (387)
+|.+||+|+. .+..+.+ . .+..+|+.+|||++-++...+
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~ 47 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE 47 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH
Confidence 7889999986 6666532 2 356799999999976665433
No 461
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.53 E-value=32 Score=32.22 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=42.7
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh------HHhhC
Q 016578 160 SPKTVLVVGGGD-GGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE------FLRQV 230 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~------~l~~~ 230 (387)
+.+.||+.|+++ ++++++++++. ...+|+.++.+....+..++..... +.+.++..|..+ ++...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~v~~~~~~~ 82 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL------DAPIFLPLDVREPGQLEAVFARI 82 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh------ccceEEecCcCCHHHHHHHHHHH
Confidence 357899999886 36777666542 2257888888754332222221111 123455566432 22211
Q ss_pred --CCCCeeEEEEcCC
Q 016578 231 --PRGKYDAIIVDSS 243 (387)
Q Consensus 231 --~~~~fDvII~D~~ 243 (387)
.-++.|++|.+..
T Consensus 83 ~~~~g~ld~lv~nAg 97 (258)
T PRK07533 83 AEEWGRLDFLLHSIA 97 (258)
T ss_pred HHHcCCCCEEEEcCc
Confidence 1247899997753
No 462
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.52 E-value=23 Score=34.46 Aligned_cols=101 Identities=19% Similarity=0.169 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh-CCCCCe
Q 016578 158 IPSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKY 235 (387)
Q Consensus 158 ~~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~-~~~~~f 235 (387)
....++||+.|+| -|..+..+++..+...+++++.+++-.+.++++-. +.-+.....+..+.+.. .....+
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga-------~~v~~~~~~~~~~~i~~~~~~~~~ 238 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGA-------TDIVAERGEEAVARVRELTGGVGA 238 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-------ceEecCCcccHHHHHHHhcCCCCC
Confidence 3456789887654 34444556777666679999988877777766421 11111111122222322 223469
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+|+- ... ....++.+.+.|+++|.++...
T Consensus 239 d~il~-~~g---------~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 239 DAVLE-CVG---------TQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CEEEE-CCC---------CHHHHHHHHHhhccCCEEEEec
Confidence 98883 321 1236788899999999988643
No 463
>PRK06849 hypothetical protein; Provisional
Probab=78.50 E-value=12 Score=37.68 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=27.7
Q ss_pred CCCEEEEEcCccc---HHHHHHHhcCCCceEEEEeCCHHHHH
Q 016578 160 SPKTVLVVGGGDG---GVLREISRHDSVELIDICEIDKMVID 198 (387)
Q Consensus 160 ~p~~VL~IG~G~G---~~~~el~k~~~~~~Vt~VEiD~~vi~ 198 (387)
++++||++|++.+ .+++.+.+++ .+|+++|.++.-..
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G--~~Vi~~d~~~~~~~ 42 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAG--HTVILADSLKYPLS 42 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCchHHH
Confidence 5789999999875 3666666663 58999999975443
No 464
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=78.37 E-value=22 Score=35.62 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEE---cchhhHHhhC-CCC
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI---GDAVEFLRQV-PRG 233 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~---gD~~~~l~~~-~~~ 233 (387)
....+||+.|+|. |..+..+++..+..+|++++.+++-.++++++-. +.-+.... .+..+.+.+. ...
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~-------~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGA-------DYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------CEEEcccccccccHHHHHHHhcCCC
Confidence 4567899996542 3333445666655589999998887777776421 10111110 1222223222 234
Q ss_pred CeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 234 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 234 ~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
.+|+|+ |... . ....+..+.+.|+++|.++..+
T Consensus 275 gvDvvl-d~~g---~-----~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQV-EAAG---A-----PPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEE-ECCC---C-----cHHHHHHHHHHHHcCCEEEEEC
Confidence 699887 4321 1 1135677888999999998643
No 465
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.30 E-value=39 Score=30.94 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=46.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH------HhhC-
Q 016578 160 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQV- 230 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~------l~~~- 230 (387)
+.+++|+.|+ +|++++.++++. ...+|++++.++.-.+...+.+... ..++.++.+|..+. ++..
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST-----GVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC-----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4567888875 566666655431 1248999999886555444433321 34688888887532 1110
Q ss_pred -CCCCeeEEEEcCC
Q 016578 231 -PRGKYDAIIVDSS 243 (387)
Q Consensus 231 -~~~~fDvII~D~~ 243 (387)
.-++.|+||....
T Consensus 79 ~~~~~id~lv~~ag 92 (241)
T PRK07454 79 EQFGCPDVLINNAG 92 (241)
T ss_pred HHcCCCCEEEECCC
Confidence 0135899997653
No 466
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=78.25 E-value=28 Score=33.50 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
....+||++|+| -|..+..+++..+ .+|+++..+++..+.+++. . . + .++..+-....... .+.+|+
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~-g-~-----~---~~~~~~~~~~~~~~-~~~~d~ 228 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKL-G-A-----D---EVVDSGAELDEQAA-AGGADV 228 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh-C-C-----c---EEeccCCcchHHhc-cCCCCE
Confidence 456799999876 5666666777754 4799999999888877553 2 1 1 11111111111111 246998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
++.-.. .....+.+.+.|+++|.++..
T Consensus 229 vi~~~~----------~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 229 ILVTVV----------SGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EEECCC----------cHHHHHHHHHhcccCCEEEEE
Confidence 874222 123567888999999988864
No 467
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=78.24 E-value=48 Score=31.98 Aligned_cols=97 Identities=23% Similarity=0.242 Sum_probs=51.3
Q ss_pred cCeEeecccchhHHHHHHHh-ccccCCCCCCEEEEEcCcccHHHHHHHh---cCCCceEEEEeCCHHHHHHHHhhccccc
Q 016578 133 DGIVQLTEKDECAYQEMIAH-LPLCSIPSPKTVLVVGGGDGGVLREISR---HDSVELIDICEIDKMVIDVSKKYFPELA 208 (387)
Q Consensus 133 DG~~q~~e~de~~Y~eml~~-l~l~~~~~p~~VL~IG~G~G~~~~el~k---~~~~~~Vt~VEiD~~vi~~ar~~~~~~~ 208 (387)
||.+.-.+-|-......+.. ... ....++||++|+| +.++.+++ ..+..+|++++.+++-.+...+.+...
T Consensus 96 ~g~l~G~NTD~~G~~~~l~~~~~~--~~~~k~vlVlGaG--g~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~- 170 (278)
T PRK00258 96 DGRLIGDNTDGIGFVRALEERLGV--DLKGKRILILGAG--GAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL- 170 (278)
T ss_pred CCEEEEEcccHHHHHHHHHhccCC--CCCCCEEEEEcCc--HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc-
Confidence 45554444453333444432 211 2346799999874 55555543 234578999999987665554444321
Q ss_pred CCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCC
Q 016578 209 VGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDP 245 (387)
Q Consensus 209 ~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp 245 (387)
..+.+ ..+..+. -..+|+||...+..
T Consensus 171 -----~~~~~-~~~~~~~-----~~~~DivInaTp~g 196 (278)
T PRK00258 171 -----GKAEL-DLELQEE-----LADFDLIINATSAG 196 (278)
T ss_pred -----cceee-cccchhc-----cccCCEEEECCcCC
Confidence 11333 1121111 24699999765543
No 468
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=78.15 E-value=21 Score=34.73 Aligned_cols=99 Identities=19% Similarity=0.320 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCc--ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCe
Q 016578 159 PSPKTVLVVGGG--DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKY 235 (387)
Q Consensus 159 ~~p~~VL~IG~G--~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~f 235 (387)
....+||+.|++ .|..+..+++..+ .+|+++.-+++-.+.+++ +.. +.-+.....|..+.+... ..+.+
T Consensus 164 ~~~~~vlV~g~~~~vg~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~-~g~------~~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 164 KPGDWVVISGAGGGLGHLGVQYAKAMG-LRVIAIDVGDEKLELAKE-LGA------DAFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHH-cCC------cEEEcCCCccHHHHHHHHhcCCCC
Confidence 456799999875 5777777888765 489999998887777654 221 101111111222223222 23469
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+|+.+... .+....+.++|+++|.++..+
T Consensus 236 d~vl~~~~~----------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 236 HAVVVTAVS----------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CEEEEcCCc----------hHHHHHHHHHhhcCCEEEEec
Confidence 999854421 135677888999999998643
No 469
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=78.12 E-value=11 Score=39.97 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=64.4
Q ss_pred CCCEEEEEcCccc--HHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccc----c-CC-CC-------CCCEEEEEcchh
Q 016578 160 SPKTVLVVGGGDG--GVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL----A-VG-FE-------DPRVRLHIGDAV 224 (387)
Q Consensus 160 ~p~~VL~IG~G~G--~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~----~-~~-~~-------d~rv~v~~gD~~ 224 (387)
+.++|-+||+|+= +++..+++.+ .+|+++|.+++.++.+++++... . .+ +. -.|++.. .|..
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG--~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAG--HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH 80 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence 4568999999953 4455556653 68999999999998775543211 0 01 10 0233332 2322
Q ss_pred hHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccc
Q 016578 225 EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 277 (387)
Q Consensus 225 ~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s 277 (387)
.. ..-|+||...++... ....+|+.+.+.++|+-++++++.+
T Consensus 81 ----~l--~~aDlVIEav~E~~~-----vK~~vf~~l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 81 ----AL--ADAGLVIEAIVENLE-----VKKALFAQLEELCPADTIIASNTSS 122 (503)
T ss_pred ----Hh--CCCCEEEEcCcCcHH-----HHHHHHHHHHhhCCCCeEEEECCCC
Confidence 22 257999976654322 2456788888888988888876644
No 470
>PRK10458 DNA cytosine methylase; Provisional
Probab=77.76 E-value=11 Score=39.54 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=43.1
Q ss_pred CEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH
Q 016578 162 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 226 (387)
Q Consensus 162 ~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~ 226 (387)
-+++++-||.|++..-+-..+ ..-|.++|+|+...+.-+.+++. +|...++.+|..+.
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i 146 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDI 146 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhC
Confidence 399999999999998886653 56788999999999998888742 23334445555543
No 471
>PRK07576 short chain dehydrogenase; Provisional
Probab=77.75 E-value=31 Score=32.47 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=45.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh------HHhhC-
Q 016578 160 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE------FLRQV- 230 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~------~l~~~- 230 (387)
..++||+.|+ +|+++..++++. ...+|++++.+++-++...+.+... ..++.++..|..+ ++++.
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA-----GPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-----CCceEEEECCCCCHHHHHHHHHHHH
Confidence 3568888885 456666655431 2357999999877665444444322 2356777777642 22211
Q ss_pred -CCCCeeEEEEcC
Q 016578 231 -PRGKYDAIIVDS 242 (387)
Q Consensus 231 -~~~~fDvII~D~ 242 (387)
.-+..|++|...
T Consensus 82 ~~~~~iD~vi~~a 94 (264)
T PRK07576 82 DEFGPIDVLVSGA 94 (264)
T ss_pred HHcCCCCEEEECC
Confidence 123689999765
No 472
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=77.72 E-value=7.7 Score=35.70 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=22.5
Q ss_pred CCEEEEEcCcccHHHHHHHh---cCCCceEEEEeCCH
Q 016578 161 PKTVLVVGGGDGGVLREISR---HDSVELIDICEIDK 194 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k---~~~~~~Vt~VEiD~ 194 (387)
..+||++|+|. ++.++++ ..++.+++.+|-|.
T Consensus 19 ~s~VlviG~gg--lGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGA--LGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCH--HHHHHHHHHHHcCCCEEEEEECCc
Confidence 46899999884 3334333 34688999999774
No 473
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.70 E-value=44 Score=33.26 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCcccHHHHH--HHhcCCCceEEEEeCCHHHHHHHHhhcc---cccCCCC-CCCEEEEEcchhhHHhhCCC
Q 016578 159 PSPKTVLVVGGGDGGVLRE--ISRHDSVELIDICEIDKMVIDVSKKYFP---ELAVGFE-DPRVRLHIGDAVEFLRQVPR 232 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~e--l~k~~~~~~Vt~VEiD~~vi~~ar~~~~---~~~~~~~-d~rv~v~~gD~~~~l~~~~~ 232 (387)
+...+|.+||+|.-+.+.. +++.. .++....+++.++..++.-. ....++. .+++++ ..|..+-+
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a~----- 75 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEAA----- 75 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHHH-----
Confidence 4456899999997665443 44432 47777799998887776421 1100111 123332 23433222
Q ss_pred CCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEE-ecccccchhhhHHHHHHHHHHHHcCCCcceEEEEeeccC
Q 016578 233 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC-NMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYP 311 (387)
Q Consensus 233 ~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv-~q~~s~~~~~~~~~~~~~~l~~~F~~~v~~~~~~iPtyp 311 (387)
+..|+||+-.+. .+.++.++.+...++++..++ ++-+ . .......+.+.+++.++. ........|.+.
T Consensus 76 ~~aDlVilavps-------~~~~~vl~~i~~~l~~~~~vIsl~kG--i-~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a 144 (341)
T PRK12439 76 NCADVVVMGVPS-------HGFRGVLTELAKELRPWVPVVSLVKG--L-EQGTNMRMSQIIEEVLPG-HPAGILAGPNIA 144 (341)
T ss_pred hcCCEEEEEeCH-------HHHHHHHHHHHhhcCCCCEEEEEEeC--C-cCCCCCcHHHHHHHHcCC-CCeEEEECCCHH
Confidence 357888876542 135568888988898887554 3321 1 111123334455566653 244556778876
Q ss_pred C----CcE-EEEEEecC
Q 016578 312 S----GII-GFLICSTE 323 (387)
Q Consensus 312 ~----g~~-gf~~ask~ 323 (387)
. |.. ..++++.+
T Consensus 145 ~ev~~g~~t~~via~~~ 161 (341)
T PRK12439 145 REVAEGYAAAAVLAMPD 161 (341)
T ss_pred HHHHcCCCeEEEEEeCC
Confidence 4 332 34555543
No 474
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=77.65 E-value=33 Score=34.43 Aligned_cols=144 Identities=12% Similarity=0.114 Sum_probs=78.4
Q ss_pred EEEEEcCcccHHHHHHH-hcCC-------CceEEEEeC-----CHHHHHHHHhhccccc--CCCC-CCCEEEEEcchhhH
Q 016578 163 TVLVVGGGDGGVLREIS-RHDS-------VELIDICEI-----DKMVIDVSKKYFPELA--VGFE-DPRVRLHIGDAVEF 226 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~-k~~~-------~~~Vt~VEi-----D~~vi~~ar~~~~~~~--~~~~-d~rv~v~~gD~~~~ 226 (387)
+|.+||+|..+.+.... .... ..+|+.... ++.+.+...+...... .++. .++++. ..|..+.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a-t~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA-VPDLVEA 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE-ECCHHHH
Confidence 47899999888776642 2211 157888776 6677776655321110 0111 234554 3565544
Q ss_pred HhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecccccchhhh--HHHHHHHHHHHHcCCCcceEE
Q 016578 227 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTH--LIEDMISICRETFKGSVHYAW 304 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~~~~~~--~~~~~~~~l~~~F~~~v~~~~ 304 (387)
++ .-|+||+-.++. +-+++++.++..|+++-.++.-+ .-...+ ....+-+.+++.|. . .+..
T Consensus 80 l~-----~ADiIIlAVPs~-------~i~~vl~~l~~~l~~~~~iVs~t--KGie~~~~~~~~~se~i~e~l~-~-~~~~ 143 (342)
T TIGR03376 80 AK-----GADILVFVIPHQ-------FLEGICKQLKGHVKPNARAISCI--KGLEVSKDGVKLLSDIIEEELG-I-PCGV 143 (342)
T ss_pred Hh-----cCCEEEEECChH-------HHHHHHHHHHhhcCCCCEEEEEe--CCcccCCCcCccHHHHHHHHhC-C-CeEE
Confidence 42 467888765431 23457788888887655444322 111222 33445555666664 2 4555
Q ss_pred EEeeccCCC----c-EEEEEEecC
Q 016578 305 ASVPTYPSG----I-IGFLICSTE 323 (387)
Q Consensus 305 ~~iPtyp~g----~-~gf~~ask~ 323 (387)
..=|++... . -..++++++
T Consensus 144 lsGP~~A~Eva~~~pt~~~ia~~~ 167 (342)
T TIGR03376 144 LSGANLANEVAKEKFSETTVGYRD 167 (342)
T ss_pred eeCcchHHHHHcCCCceEEEEeCC
Confidence 666777532 2 256666654
No 475
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=77.54 E-value=21 Score=34.61 Aligned_cols=100 Identities=21% Similarity=0.301 Sum_probs=58.0
Q ss_pred CCCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh-CCCCCe
Q 016578 158 IPSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKY 235 (387)
Q Consensus 158 ~~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~-~~~~~f 235 (387)
..+.++||+.|+| .|..+..+++..+...|+++.-+++-.+.++++ .. +.-+.....+..+.+.. .....+
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~-g~------~~~~~~~~~~~~~~i~~~~~~~~v 235 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKL-GA------DYTIDAAEEDLVEKVRELTDGRGA 235 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CC------cEEecCCccCHHHHHHHHhCCcCC
Confidence 3556799999754 445555567766544488888888887777543 11 10011111122222222 223459
Q ss_pred eEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 236 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 236 DvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
|+|+-... ....+..+.+.|+++|.++..
T Consensus 236 d~vld~~~----------~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 236 DVVIVATG----------SPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred CEEEECCC----------ChHHHHHHHHHhhcCCEEEEE
Confidence 98874322 123677888999999998864
No 476
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.50 E-value=3.9 Score=40.32 Aligned_cols=74 Identities=18% Similarity=0.342 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC----CCCC
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV----PRGK 234 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~----~~~~ 234 (387)
....+|..||.|...++..+++.+ .+|++||+++.-+.+-+-.+..+- .+ -.++|...|+.-. ...-
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA~R------~L-p~h~dl~r~~a~a~t~~n~~~ 132 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAAFR------HL-PSHEDLVRFFALAGTRRNSQA 132 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHHHh------hc-ccchhhHHHhhhhcccccchh
Confidence 346689999999888988888876 699999999999887765543320 01 1123666665321 2235
Q ss_pred eeEEEEc
Q 016578 235 YDAIIVD 241 (387)
Q Consensus 235 fDvII~D 241 (387)
||.-+..
T Consensus 133 yD~flae 139 (414)
T COG5379 133 YDRFLAE 139 (414)
T ss_pred hhccccc
Confidence 8887743
No 477
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=77.31 E-value=7.4 Score=37.78 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=43.0
Q ss_pred CCEEEEEcCcccHHHHHHHhc---CCCceEEEEeCCHHHH------------------HHHHhhcccccCCCCCCCEEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRH---DSVELIDICEIDKMVI------------------DVSKKYFPELAVGFEDPRVRLH 219 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~---~~~~~Vt~VEiD~~vi------------------~~ar~~~~~~~~~~~d~rv~v~ 219 (387)
..+||++|+| +++.+++++ .++.+++.+|-|..-. +.+++.+..+ +|.+++.
T Consensus 26 ~SrVLVVG~G--GLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eL-----NP~V~V~ 98 (287)
T PTZ00245 26 HTSVALHGVA--GAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRL-----NPHVSVY 98 (287)
T ss_pred hCeEEEECCC--chHHHHHHHHHHcCCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHH-----CCCcEEE
Confidence 4689999986 466666554 5788999998765433 2333333333 5677776
Q ss_pred EcchhhHHhhCCCCCeeEEEE
Q 016578 220 IGDAVEFLRQVPRGKYDAIIV 240 (387)
Q Consensus 220 ~gD~~~~l~~~~~~~fDvII~ 240 (387)
..+. .+. ..+.|+++++
T Consensus 99 ~i~~--rld--~~n~fqvvV~ 115 (287)
T PTZ00245 99 DAVT--KLD--GSSGTRVTMA 115 (287)
T ss_pred Eccc--ccC--CcCCceEEEE
Confidence 5552 222 2457888885
No 478
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=77.18 E-value=28 Score=33.74 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhh-CCCCCee
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~-~~~~~fD 236 (387)
.+.++||+.|+| -|..+..+++..+..+|++++.+++-.+.++++ ... -+.....|..+.+.+ ...+.+|
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~-g~~-------~~~~~~~~~~~~l~~~~~~~~~d 237 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAAL-GAE-------PINFEDAEPVERVREATEGRGAD 237 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHh-CCe-------EEecCCcCHHHHHHHHhCCCCCC
Confidence 456799998643 233444556665545788998888777776663 210 011111222222322 2234699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+|+-.... .+......+.|+++|.++...
T Consensus 238 vvid~~~~----------~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 238 VVLEAVGG----------AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred EEEECCCC----------HHHHHHHHHhcccCCEEEEEC
Confidence 88743221 235778888999999988643
No 479
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=77.14 E-value=23 Score=34.46 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
...++||+.|+| .|..+.++++..+. +|++++.+++-.+.++++ .. +.-+.....|..+.+... ..+|+
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~-g~------~~~i~~~~~~~~~~~~~~--~~~d~ 231 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKL-GA------HHYIDTSKEDVAEALQEL--GGAKL 231 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHc-CC------cEEecCCCccHHHHHHhc--CCCCE
Confidence 456799999854 34444556776554 799999998888888653 21 111111222333334333 35898
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
|+- .. + ....++.+.+.|+++|.++...
T Consensus 232 vi~-~~---g------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 232 ILA-TA---P------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEE-CC---C------chHHHHHHHHHcccCCEEEEEe
Confidence 883 21 1 1135677888999999998643
No 480
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.10 E-value=42 Score=31.31 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=44.7
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh------HHhhC
Q 016578 160 SPKTVLVVGGGD-GGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE------FLRQV 230 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~------~l~~~ 230 (387)
..+.+|+.|+++ +++++.+++.. ...+|+.+..+....+..++.. ..++.++..|..+ +++..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV--------DEEDLLVECDVASDESIERAFATI 77 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc--------cCceeEEeCCCCCHHHHHHHHHHH
Confidence 457899999875 56776665541 2357888887754433333321 2356777777643 22111
Q ss_pred --CCCCeeEEEEcCC
Q 016578 231 --PRGKYDAIIVDSS 243 (387)
Q Consensus 231 --~~~~fDvII~D~~ 243 (387)
.-++.|++|.++.
T Consensus 78 ~~~~g~iD~lv~nAg 92 (252)
T PRK06079 78 KERVGKIDGIVHAIA 92 (252)
T ss_pred HHHhCCCCEEEEccc
Confidence 1257999997753
No 481
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=77.05 E-value=6.6 Score=35.44 Aligned_cols=101 Identities=27% Similarity=0.290 Sum_probs=58.4
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEE-EEEcchhhHHhhCCCCCeeEEE
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVR-LHIGDAVEFLRQVPRGKYDAII 239 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~-v~~gD~~~~l~~~~~~~fDvII 239 (387)
.++++++|..-=-+-..+++++ ..+|..||-++--++ +.+ .| |+. +...|..+-.+.. .++||++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~---~~~-------~d-r~ssi~p~df~~~~~~y-~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQ---EEF-------RD-RLSSILPVDFAKNWQKY-AGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccC---ccc-------cc-ccccccHHHHHHHHHHh-hccchhhh
Confidence 5689999988766666667774 678999997652211 001 11 222 2223332222222 46899887
Q ss_pred EcCC-CCCC------CccccchHHHHHHHHHhccCCCeEEec
Q 016578 240 VDSS-DPVG------PAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 240 ~D~~-dp~~------~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+-++ .+.+ |.+..-....+..+++.||+||.|.+-
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 5332 1211 122233456788999999999988753
No 482
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=77.00 E-value=6.8 Score=38.53 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEEEcCcccHHHHHHHh---cCCCceEEEEeCCH
Q 016578 163 TVLVVGGGDGGVLREISR---HDSVELIDICEIDK 194 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el~k---~~~~~~Vt~VEiD~ 194 (387)
+||+||+| +++-++++ ..++.+++.+|.|.
T Consensus 1 kVlVVGaG--GlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAG--GLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred CEEEECCC--HHHHHHHHHHHHcCCCeEEEECCCE
Confidence 58999987 34444333 35688999999764
No 483
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=76.78 E-value=27 Score=40.31 Aligned_cols=107 Identities=12% Similarity=0.184 Sum_probs=57.4
Q ss_pred CCCEEEEEcCcc-cH-HHHHHHhcCCCc------------eEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhh
Q 016578 160 SPKTVLVVGGGD-GG-VLREISRHDSVE------------LIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 225 (387)
Q Consensus 160 ~p~~VL~IG~G~-G~-~~~el~k~~~~~------------~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~ 225 (387)
..++||+||+|- |. .++.+++++... .|+++|++++-.+.+.+.++.. .-+.+-..|..+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~------~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA------EAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC------ceEEeecCCHHH
Confidence 356999999972 33 344455554322 4899999987766555443210 112332345444
Q ss_pred HHhhCCCCCeeEEEEcCCCCCCCc---------ccc----chHHHHHHHHHhccCCCeEEec
Q 016578 226 FLRQVPRGKYDAIIVDSSDPVGPA---------QEL----VEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 226 ~l~~~~~~~fDvII~D~~dp~~~~---------~~L----~~~ef~~~l~~~LkpgGvlv~q 274 (387)
..+.. ...|+||+-.+...+.. .++ +..+-.+.+.+.-+..|+.++.
T Consensus 642 L~~~v--~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 642 LLKYV--SQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred HHHhh--cCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEE
Confidence 33221 24999998776543210 111 2333445555666667765543
No 484
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=76.78 E-value=2.9 Score=41.29 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=79.7
Q ss_pred ceeEEEE-cCeEeecccchhH-----HHHHHHhccccCCCCCCEEEEEcCcccHHHH-HHHhcCCCceEEEEeCCHHHHH
Q 016578 126 YGKVLVL-DGIVQLTEKDECA-----YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLR-EISRHDSVELIDICEIDKMVID 198 (387)
Q Consensus 126 ~G~~L~l-DG~~q~~e~de~~-----Y~eml~~l~l~~~~~p~~VL~IG~G~G~~~~-el~k~~~~~~Vt~VEiD~~vi~ 198 (387)
+|++=.. +|+.|+-.+-... -.|+..-.-+. .....|.|+=+|-|.++. .+.+. +.+.|.++|++|..++
T Consensus 156 ~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~s--c~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svE 232 (351)
T KOG1227|consen 156 LGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTS--CDGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVE 232 (351)
T ss_pred ccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhcc--cccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHH
Confidence 4455444 3777764333211 14555444332 345789999999999998 55554 5789999999999999
Q ss_pred HHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCe
Q 016578 199 VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 270 (387)
Q Consensus 199 ~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGv 270 (387)
..|+.+..+.. ..|..++.+|-+.- .+....|-|.+.+-. . .++-+-.+.++|+|.|-
T Consensus 233 aLrR~~~~N~V---~~r~~i~~gd~R~~---~~~~~AdrVnLGLlP-S-------se~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 233 ALRRNAEANNV---MDRCRITEGDNRNP---KPRLRADRVNLGLLP-S-------SEQGWPTAIKALKPEGG 290 (351)
T ss_pred HHHHHHHhcch---HHHHHhhhcccccc---Cccccchheeecccc-c-------cccchHHHHHHhhhcCC
Confidence 99998765422 33566666765432 124567777765321 1 11234466778888664
No 485
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=76.57 E-value=19 Score=35.57 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCee
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fD 236 (387)
.+..+||+.|+| .|..+..+++..+..+|++++.++.-.+.+++. .. +.-+.....+....+... +.+.+|
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~-g~------~~vv~~~~~~~~~~l~~~~~~~~vd 253 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRF-GA------THTVNASEDDAVEAVRDLTDGRGAD 253 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHh-CC------eEEeCCCCccHHHHHHHHcCCCCCC
Confidence 456799999764 355556677776655699999888887777542 21 101111111222223222 234699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+|+--... .+..+.+.+.|+++|.++..
T Consensus 254 ~vld~~~~----------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 254 YAFEAVGR----------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEEEcCCC----------hHHHHHHHHHhhcCCeEEEE
Confidence 88732221 13567888899999998853
No 486
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=76.54 E-value=44 Score=32.52 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=39.0
Q ss_pred cCeEeecccchhHHHHHHHhccccCCCCCCEEEEEcCccc-HHHHHHHhcCCCceEEEEeCCHHHHHHHHhhc
Q 016578 133 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDG-GVLREISRHDSVELIDICEIDKMVIDVSKKYF 204 (387)
Q Consensus 133 DG~~q~~e~de~~Y~eml~~l~l~~~~~p~~VL~IG~G~G-~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~ 204 (387)
||.+.-.+-|-.-....+... ......++||+||+|.- ......+...+..+|+.++.+++-.+...+.+
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~~--~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l 171 (284)
T PRK12549 101 DGRRIGHNTDWSGFAESFRRG--LPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADEL 171 (284)
T ss_pred CCEEEEEcCCHHHHHHHHHhh--ccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHH
Confidence 565555555543344444321 11235679999998742 22222233345678999999976555444433
No 487
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=76.39 E-value=14 Score=35.69 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=51.5
Q ss_pred EEEEEcCcccHH--HHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEE---EEcchhhHHhhCCCCCeeE
Q 016578 163 TVLVVGGGDGGV--LREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRL---HIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 163 ~VL~IG~G~G~~--~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v---~~gD~~~~l~~~~~~~fDv 237 (387)
+|++||+|.-+. +..+++.+ .+|+.++. ++.++..++.--.... .+....+ ...|. .+. .+.+|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g--~~V~~~~r-~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~----~~~-~~~~d~ 71 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG--RDVTFLVR-PKRAKALRERGLVIRS--DHGDAVVPGPVITDP----EEL-TGPFDL 71 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--CceEEEec-HHHHHHHHhCCeEEEe--CCCeEEecceeecCH----HHc-cCCCCE
Confidence 699999886544 33344543 57999998 6666665543111100 0111111 01121 111 247999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEE
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 272 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv 272 (387)
||+-.... ...+.++.+...+.++.+++
T Consensus 72 vilavk~~-------~~~~~~~~l~~~~~~~~~ii 99 (305)
T PRK12921 72 VILAVKAY-------QLDAAIPDLKPLVGEDTVII 99 (305)
T ss_pred EEEEeccc-------CHHHHHHHHHhhcCCCCEEE
Confidence 99765432 13457888888888887665
No 488
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=76.16 E-value=13 Score=34.40 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=45.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchh-----------hH
Q 016578 160 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV-----------EF 226 (387)
Q Consensus 160 ~p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~-----------~~ 226 (387)
..++||+.|+ +|+++..++++. ...+|++++.+++-.+...+.+... ...++.++..|.. +.
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHHHHH
Confidence 4568888885 556666655431 1248999999887655544444322 1235666666653 11
Q ss_pred HhhCCCCCeeEEEEcCC
Q 016578 227 LRQVPRGKYDAIIVDSS 243 (387)
Q Consensus 227 l~~~~~~~fDvII~D~~ 243 (387)
+.+. -++.|+||....
T Consensus 86 ~~~~-~~~id~vi~~Ag 101 (247)
T PRK08945 86 IEEQ-FGRLDGVLHNAG 101 (247)
T ss_pred HHHH-hCCCCEEEECCc
Confidence 2221 247899997654
No 489
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.12 E-value=5.2 Score=40.82 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhcCCCceEEEEeCCHHHHHHHHh
Q 016578 159 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKK 202 (387)
Q Consensus 159 ~~p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~ 202 (387)
.+..+||.|.+|+..++..+++.+ ++|++||++|....+.+=
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~~P--~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLAGP--KRIHAVDLNPAQNALLEL 75 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhcCC--ceEEEEeCCHHHHHHHHH
Confidence 456689999988888887777765 799999999998886654
No 490
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=76.09 E-value=35 Score=34.01 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=59.9
Q ss_pred CCCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 159 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 159 ~~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
.+.++||+.|+| -|..+..+++..+..+|++++.+++-.+.+++.-.. -+.....+..+.+.+...+.+|+
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~--------~v~~~~~~~~~~i~~~~~~~~d~ 246 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI--------PIDFSDGDPVEQILGLEPGGVDR 246 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe--------EeccCcccHHHHHHHhhCCCCCE
Confidence 456789997764 344555567766555888899999888887764211 01111123333333322346898
Q ss_pred EEEcCCCCCC-CccccchHHHHHHHHHhccCCCeEEe
Q 016578 238 IIVDSSDPVG-PAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 238 II~D~~dp~~-~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
|+--...+.. ..-.......+..+.+.|+++|.++.
T Consensus 247 v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 247 AVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred EEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 8743221110 00000112357788899999999864
No 491
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=75.87 E-value=26 Score=35.89 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcC-cc-cHHHHHHHhcCCCc------eEEEE--eCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHH
Q 016578 158 IPSPKTVLVVGG-GD-GGVLREISRHDSVE------LIDIC--EIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL 227 (387)
Q Consensus 158 ~~~p~~VL~IG~-G~-G~~~~el~k~~~~~------~Vt~V--EiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l 227 (387)
.++|-+|.+||+ |. |......+-..... .++.+ |++++..+--..-+.+....+- .++++..+|..++
T Consensus 41 ~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~-~~v~i~~~~y~~~- 118 (387)
T TIGR01757 41 WKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLL-REVSIGIDPYEVF- 118 (387)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhc-CceEEecCCHHHh-
Confidence 456889999999 75 55444433332232 24445 6655544322221221110111 2466555654332
Q ss_pred hhCCCCCeeEEEEcCCCCCCCccc---cc--hH----HHHHHHHHhccCCCeEEecc
Q 016578 228 RQVPRGKYDAIIVDSSDPVGPAQE---LV--EK----PFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 228 ~~~~~~~fDvII~D~~dp~~~~~~---L~--~~----ef~~~l~~~LkpgGvlv~q~ 275 (387)
..-|+||+-...|..+... |+ +. ++.+.+.+.-+|+|++++-+
T Consensus 119 -----kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 119 -----EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred -----CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 2489999876666544211 11 12 33444444445889877643
No 492
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.76 E-value=35 Score=31.42 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=47.0
Q ss_pred CCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH------HhhC--
Q 016578 161 PKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQV-- 230 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~------l~~~-- 230 (387)
.++||+.|+ +|+++..++++. ...+|++++.++.-.+...+.+... ..+++++.+|..+. +...
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA-----GGKAIGVAMDVTDEEAINAGIDYAVE 77 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 357888875 567777776642 2348999999887665544433321 35788888886532 1111
Q ss_pred CCCCeeEEEEcCC
Q 016578 231 PRGKYDAIIVDSS 243 (387)
Q Consensus 231 ~~~~fDvII~D~~ 243 (387)
..+..|+||....
T Consensus 78 ~~~~~d~vi~~a~ 90 (258)
T PRK12429 78 TFGGVDILVNNAG 90 (258)
T ss_pred HcCCCCEEEECCC
Confidence 1236899997654
No 493
>PRK14851 hypothetical protein; Provisional
Probab=75.74 E-value=8.3 Score=42.38 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=25.7
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhcCCCceEEEEeCCHH
Q 016578 160 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKM 195 (387)
Q Consensus 160 ~p~~VL~IG~G-~G~~~~el~k~~~~~~Vt~VEiD~~ 195 (387)
...+|+++|+| .|+...+.+-..++.+++.||-|.-
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~v 78 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQF 78 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEe
Confidence 35699999998 5665555444446889999986643
No 494
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=75.58 E-value=15 Score=35.66 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=52.2
Q ss_pred CCCCEEEEEcC--cccHHHHHHHhcCCCceEEEEeCCH---HHHHHHHhhcccccCCCCCCCEEEEEc---chhhHHhhC
Q 016578 159 PSPKTVLVVGG--GDGGVLREISRHDSVELIDICEIDK---MVIDVSKKYFPELAVGFEDPRVRLHIG---DAVEFLRQV 230 (387)
Q Consensus 159 ~~p~~VL~IG~--G~G~~~~el~k~~~~~~Vt~VEiD~---~vi~~ar~~~~~~~~~~~d~rv~v~~g---D~~~~l~~~ 230 (387)
.+.++||+.|+ +.|..+.++++..+..-+..++-++ +-.+.+++ +.. +.-+..... +..+.+...
T Consensus 145 ~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~-~g~------~~~~~~~~~~~~~~~~~i~~~ 217 (341)
T cd08290 145 QPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKA-LGA------DHVLTEEELRSLLATELLKSA 217 (341)
T ss_pred CCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHh-cCC------CEEEeCcccccccHHHHHHHH
Confidence 45679999974 5666777778876654445555432 33444443 211 111111111 333333332
Q ss_pred CCCCeeEEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 231 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 231 ~~~~fDvII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
..+.+|+|+ |... . . ....+.+.|+++|.++..
T Consensus 218 ~~~~~d~vl-d~~g---~------~-~~~~~~~~l~~~G~~v~~ 250 (341)
T cd08290 218 PGGRPKLAL-NCVG---G------K-SATELARLLSPGGTMVTY 250 (341)
T ss_pred cCCCceEEE-ECcC---c------H-hHHHHHHHhCCCCEEEEE
Confidence 222699888 3322 1 1 234567889999998854
No 495
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=75.51 E-value=36 Score=32.73 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=65.5
Q ss_pred CCEEEEEcCcccHHHHHHHhcCCCceEEEEeCC-HHHHHHHHhhcccccCCCCCCCEEEEEcchhh-HHhhCCCCCee--
Q 016578 161 PKTVLVVGGGDGGVLREISRHDSVELIDICEID-KMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE-FLRQVPRGKYD-- 236 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~~~~~Vt~VEiD-~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~-~l~~~~~~~fD-- 236 (387)
+..|++||||-=.-...+. .+ ..++.+|+| |++++.-++.++.... ....+.+++..|..+ +........||
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~-~~--~~~~~~EvD~P~v~~~K~~~l~~~~~-~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLP-WP--DGTRVFEVDQPAVLAFKEKVLAELGA-EPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CcEEEEeCCccccHHHhcC-CC--CCCeEEECCChHHHHHHHHHHHHcCC-CCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 5579999999766665542 22 257888998 7788777777765311 124678888888752 22222112233
Q ss_pred ---EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEeccccc
Q 016578 237 ---AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 278 (387)
Q Consensus 237 ---vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~~s~ 278 (387)
++|...-...-+... ...+++.+.+...||+.++....++
T Consensus 158 ~ptl~i~EGvl~YL~~~~--v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEA--VDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCeeeeecchhhcCCHHH--HHHHHHHHHHhCCCCcEEEEEeccc
Confidence 344332222211111 3357778877777999888765444
No 496
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=75.43 E-value=6.8 Score=40.45 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=43.0
Q ss_pred EEEEEcCcccHHHHHH----Hhc--CCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEE-EcchhhHHhhCCCCCe
Q 016578 163 TVLVVGGGDGGVLREI----SRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLH-IGDAVEFLRQVPRGKY 235 (387)
Q Consensus 163 ~VL~IG~G~G~~~~el----~k~--~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~-~gD~~~~l~~~~~~~f 235 (387)
+|.+||+|+-+.+..+ +.. ....+|+.+|+|++.++...+......... ....++. ..|..+-+ ..-
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~-~~~~~I~~ttD~~eal-----~~A 75 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL-GAPLKIEATTDRREAL-----DGA 75 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHh-----cCC
Confidence 6899999995554333 221 233589999999988887665443321111 1223443 45644333 246
Q ss_pred eEEEEcCC
Q 016578 236 DAIIVDSS 243 (387)
Q Consensus 236 DvII~D~~ 243 (387)
|+||....
T Consensus 76 D~Vi~ai~ 83 (423)
T cd05297 76 DFVINTIQ 83 (423)
T ss_pred CEEEEeeE
Confidence 88886544
No 497
>PRK08265 short chain dehydrogenase; Provisional
Probab=75.25 E-value=59 Score=30.38 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=43.6
Q ss_pred CCEEEEEcCcccHHHHHHHhcC--CCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhH------HhhC--
Q 016578 161 PKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQV-- 230 (387)
Q Consensus 161 p~~VL~IG~G~G~~~~el~k~~--~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~------l~~~-- 230 (387)
.+++|+.|++ |++++.++++. ...+|++++.+++-.+...+.+ ..++.++.+|..+. +...
T Consensus 6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL--------GERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 4678888754 55666665431 1258999999876444433322 23677777777532 1111
Q ss_pred CCCCeeEEEEcCC
Q 016578 231 PRGKYDAIIVDSS 243 (387)
Q Consensus 231 ~~~~fDvII~D~~ 243 (387)
.-+..|++|....
T Consensus 77 ~~g~id~lv~~ag 89 (261)
T PRK08265 77 RFGRVDILVNLAC 89 (261)
T ss_pred HhCCCCEEEECCC
Confidence 1246899997654
No 498
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=75.20 E-value=18 Score=35.39 Aligned_cols=99 Identities=10% Similarity=0.034 Sum_probs=51.3
Q ss_pred CCCEEEEEcCcc--cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeE
Q 016578 160 SPKTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 237 (387)
Q Consensus 160 ~p~~VL~IG~G~--G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDv 237 (387)
...+|++||+|. +.++..+++.. ..|+.+.-++. +..++.--.... .+.+..+....+...... ...||+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~~--~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~--~~~~D~ 75 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSDY--EAVRENGLQVDS--VHGDFHLPPVQAYRSAED--MPPCDW 75 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCCH--HHHHhCCeEEEe--CCCCeeecCceEEcchhh--cCCCCE
Confidence 345899999883 33444455543 57888887762 333332111100 011111110001111111 247999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEe
Q 016578 238 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 273 (387)
Q Consensus 238 II~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~ 273 (387)
||+-..... ..+.++.+...++++++++.
T Consensus 76 vilavK~~~-------~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 76 VLVGLKTTA-------NALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred EEEEecCCC-------hHhHHHHHhhhcCCCCEEEE
Confidence 997643211 34578888889999997663
No 499
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=75.16 E-value=27 Score=33.88 Aligned_cols=98 Identities=21% Similarity=0.243 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhC-CCCCee
Q 016578 159 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 236 (387)
Q Consensus 159 ~~p~~VL~IG~G~-G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~-~~~~fD 236 (387)
...++||+.|+|. |..+..+++..+..+|++++-+++-.+.++++ .. +.-+... .+..+-+.+. ....+|
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~-~~~~~~i~~~~~~~~~d 237 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERL-GA------DHVLNAS-DDVVEEVRELTGGRGAD 237 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHh-CC------cEEEcCC-ccHHHHHHHHhCCCCCC
Confidence 4567999998543 33334455654335788888888877777653 11 1000000 1111112222 234699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhccCCCeEEec
Q 016578 237 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 274 (387)
Q Consensus 237 vII~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q 274 (387)
+|+-... .....+.+.+.|+++|.++..
T Consensus 238 vvld~~g----------~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 238 AVIDFVG----------SDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred EEEEcCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 8884322 123577888999999998854
No 500
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=75.10 E-value=25 Score=33.93 Aligned_cols=97 Identities=22% Similarity=0.329 Sum_probs=60.0
Q ss_pred CCEEEEEcC--cccHHHHHHHhcCCCceEEEEeCCHHHHHHHHhhcccccCCCCCCCEEEEEcchhhHHhhCCCCCeeEE
Q 016578 161 PKTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 238 (387)
Q Consensus 161 p~~VL~IG~--G~G~~~~el~k~~~~~~Vt~VEiD~~vi~~ar~~~~~~~~~~~d~rv~v~~gD~~~~l~~~~~~~fDvI 238 (387)
..+||++|+ +-|..+..+++..+..+|++++.+++-.+.+++ +.. +.-+... .+..+.+.....+.+|+|
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~------~~~~~~~-~~~~~~i~~~~~~~~d~v 221 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKE-LGA------DHVINHH-QDLAEQLEALGIEPVDYI 221 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHh-cCC------cEEEeCC-ccHHHHHHhhCCCCCCEE
Confidence 679999984 566677777887653689999998888887755 221 1011111 122233332223469988
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhccCCCeEEecc
Q 016578 239 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 275 (387)
Q Consensus 239 I~D~~dp~~~~~~L~~~ef~~~l~~~LkpgGvlv~q~ 275 (387)
+-.... ....+.+.+.|+++|.++..+
T Consensus 222 l~~~~~----------~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 222 FCLTDT----------DQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred EEccCc----------HHHHHHHHHHhcCCCEEEEec
Confidence 832221 135778889999999988643
Done!