Query 016579
Match_columns 387
No_of_seqs 131 out of 617
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05339 PEP synthetase regula 100.0 4E-106 9E-111 774.1 32.6 265 95-375 2-266 (269)
2 PF03618 Kinase-PPPase: Kinase 100.0 2E-105 5E-110 764.7 29.3 255 100-368 1-255 (255)
3 COG1806 Uncharacterized protei 100.0 9.5E-96 2E-100 699.0 28.9 270 96-376 2-271 (273)
4 PRK13947 shikimate kinase; Pro 97.7 0.00067 1.4E-08 59.4 11.9 120 249-373 4-168 (171)
5 PRK04220 2-phosphoglycerate ki 97.4 0.00085 1.8E-08 66.9 9.9 89 281-375 197-292 (301)
6 PRK03839 putative kinase; Prov 97.3 0.0015 3.2E-08 58.3 9.5 117 249-375 3-155 (180)
7 COG1936 Predicted nucleotide k 97.1 0.0023 5E-08 59.8 8.4 112 249-373 3-156 (180)
8 PRK03731 aroL shikimate kinase 96.9 0.0075 1.6E-07 53.1 9.9 120 249-372 5-169 (171)
9 PRK05057 aroK shikimate kinase 96.9 0.012 2.5E-07 53.1 10.9 115 249-373 7-171 (172)
10 PRK04040 adenylate kinase; Pro 96.6 0.014 3.1E-07 53.7 9.6 116 249-371 5-187 (188)
11 PRK05416 glmZ(sRNA)-inactivati 96.6 0.0079 1.7E-07 59.4 8.2 118 249-373 9-160 (288)
12 PRK14738 gmk guanylate kinase; 96.6 0.031 6.8E-07 51.7 11.4 135 240-376 3-197 (206)
13 PRK04182 cytidylate kinase; Pr 96.5 0.021 4.6E-07 49.8 9.4 27 249-275 3-30 (180)
14 PRK13808 adenylate kinase; Pro 96.4 0.025 5.5E-07 57.3 10.4 123 249-374 3-194 (333)
15 PRK13477 bifunctional pantoate 96.4 0.029 6.3E-07 59.8 11.2 73 294-373 422-503 (512)
16 TIGR02173 cyt_kin_arch cytidyl 96.3 0.028 6.2E-07 48.7 9.1 27 249-275 3-30 (171)
17 PRK13949 shikimate kinase; Pro 96.2 0.038 8.3E-07 49.8 9.4 115 249-370 4-168 (169)
18 PRK00131 aroK shikimate kinase 96.1 0.063 1.4E-06 46.4 10.0 31 342-373 141-171 (175)
19 PRK13946 shikimate kinase; Pro 95.9 0.068 1.5E-06 48.4 9.8 41 334-376 138-179 (184)
20 PRK02496 adk adenylate kinase; 95.8 0.078 1.7E-06 47.4 9.8 113 249-372 4-183 (184)
21 PRK14532 adenylate kinase; Pro 95.8 0.055 1.2E-06 48.4 8.7 28 249-276 3-31 (188)
22 cd00227 CPT Chloramphenicol (C 95.8 0.029 6.3E-07 50.0 6.8 22 350-371 153-174 (175)
23 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.17 3.7E-06 44.7 10.9 116 249-371 2-182 (183)
24 PLN02200 adenylate kinase fami 95.3 0.2 4.4E-06 47.7 11.1 116 249-374 46-225 (234)
25 PRK08154 anaerobic benzoate ca 95.1 0.15 3.2E-06 50.4 9.8 124 248-373 135-301 (309)
26 PRK12339 2-phosphoglycerate ki 95.1 0.11 2.4E-06 48.4 8.5 73 296-372 122-196 (197)
27 TIGR01360 aden_kin_iso1 adenyl 95.1 0.14 3E-06 45.1 8.6 117 249-372 6-186 (188)
28 PRK13948 shikimate kinase; Pro 94.9 0.29 6.2E-06 45.3 10.5 114 247-373 11-175 (182)
29 PRK06762 hypothetical protein; 94.5 0.14 3.1E-06 44.7 7.3 24 351-374 142-165 (166)
30 PLN02199 shikimate kinase 94.5 0.65 1.4E-05 46.9 12.6 148 211-374 77-289 (303)
31 TIGR00682 lpxK tetraacyldisacc 94.5 0.026 5.6E-07 56.5 2.7 29 246-274 27-62 (311)
32 PRK08233 hypothetical protein; 94.4 0.33 7E-06 42.5 9.1 74 293-374 98-178 (182)
33 PF00625 Guanylate_kin: Guanyl 94.2 0.31 6.6E-06 43.8 8.9 123 249-373 5-182 (183)
34 PRK00652 lpxK tetraacyldisacch 94.1 0.034 7.4E-07 56.0 2.7 28 247-274 49-83 (325)
35 cd01672 TMPK Thymidine monopho 94.1 0.49 1.1E-05 41.5 9.7 72 293-372 126-199 (200)
36 TIGR02322 phosphon_PhnN phosph 94.0 0.59 1.3E-05 41.4 10.2 20 249-268 4-23 (179)
37 PF13207 AAA_17: AAA domain; P 93.9 0.035 7.7E-07 45.6 2.0 27 249-275 2-29 (121)
38 PRK10078 ribose 1,5-bisphospho 93.5 0.3 6.4E-06 44.1 7.4 41 330-373 136-176 (186)
39 TIGR00017 cmk cytidylate kinas 93.0 0.61 1.3E-05 44.1 9.0 24 249-272 5-29 (217)
40 PF03668 ATP_bind_2: P-loop AT 93.0 0.71 1.5E-05 46.2 9.8 119 249-374 4-157 (284)
41 PRK14530 adenylate kinase; Pro 92.9 1.3 2.9E-05 40.8 11.0 27 248-274 5-32 (215)
42 PRK01906 tetraacyldisaccharide 92.9 0.07 1.5E-06 54.1 2.6 31 246-276 55-92 (338)
43 PRK00625 shikimate kinase; Pro 92.7 1.2 2.6E-05 40.8 10.2 115 249-371 3-171 (173)
44 smart00072 GuKc Guanylate kina 92.7 0.99 2.1E-05 40.8 9.6 122 249-373 5-182 (184)
45 PF02606 LpxK: Tetraacyldisacc 92.7 0.11 2.4E-06 52.2 3.8 40 235-274 23-69 (326)
46 PRK14528 adenylate kinase; Pro 92.6 0.34 7.3E-06 44.2 6.5 115 249-370 4-185 (186)
47 PRK11860 bifunctional 3-phosph 92.4 1.4 3.1E-05 48.1 11.9 70 297-373 578-655 (661)
48 PRK13975 thymidylate kinase; P 92.3 0.79 1.7E-05 41.0 8.4 74 292-375 113-192 (196)
49 COG1663 LpxK Tetraacyldisaccha 92.2 0.11 2.4E-06 52.9 3.0 29 246-274 46-81 (336)
50 PRK14527 adenylate kinase; Pro 92.1 2.2 4.8E-05 38.6 11.1 72 293-371 112-190 (191)
51 TIGR01351 adk adenylate kinase 91.5 2.3 5E-05 39.1 10.7 28 249-276 2-30 (210)
52 PF03808 Glyco_tran_WecB: Glyc 91.1 2.8 6E-05 38.1 10.6 102 95-204 46-148 (172)
53 COG0703 AroK Shikimate kinase 90.7 1.7 3.6E-05 40.6 8.9 113 248-373 4-168 (172)
54 COG1219 ClpX ATP-dependent pro 90.5 0.16 3.4E-06 52.3 2.2 50 220-280 78-127 (408)
55 PRK12337 2-phosphoglycerate ki 89.8 1.8 3.9E-05 46.2 9.4 75 297-375 387-463 (475)
56 PRK14021 bifunctional shikimat 89.8 2.3 4.9E-05 45.6 10.2 73 294-375 104-178 (542)
57 PRK12297 obgE GTPase CgtA; Rev 89.8 0.9 1.9E-05 47.5 7.0 34 246-279 158-191 (424)
58 PRK13951 bifunctional shikimat 89.0 2.7 5.8E-05 44.6 10.0 108 249-369 3-157 (488)
59 cd01983 Fer4_NifH The Fer4_Nif 89.0 0.32 6.9E-06 37.0 2.4 29 249-277 2-34 (99)
60 PRK00091 miaA tRNA delta(2)-is 88.4 1.1 2.5E-05 44.7 6.4 24 249-272 7-31 (307)
61 cd00071 GMPK Guanosine monopho 88.3 0.68 1.5E-05 40.3 4.2 99 249-361 2-103 (137)
62 PF00004 AAA: ATPase family as 88.3 0.35 7.5E-06 39.6 2.3 24 249-272 1-25 (132)
63 COG0190 FolD 5,10-methylene-te 88.1 3.6 7.8E-05 41.3 9.6 150 94-274 29-184 (283)
64 PF00899 ThiF: ThiF family; I 88.1 3.2 6.9E-05 35.6 8.2 68 110-189 57-124 (135)
65 KOG0745 Putative ATP-dependent 87.3 0.35 7.5E-06 51.5 2.1 45 232-280 212-256 (564)
66 TIGR02729 Obg_CgtA Obg family 87.3 1.6 3.5E-05 43.8 6.8 35 246-280 157-191 (329)
67 COG1100 GTPase SAR1 and relate 87.1 2.9 6.2E-05 37.6 7.7 113 247-364 6-126 (219)
68 PRK09518 bifunctional cytidyla 86.4 5.5 0.00012 43.9 10.7 47 328-374 179-232 (712)
69 PRK14737 gmk guanylate kinase; 86.0 15 0.00033 33.8 11.9 122 249-373 7-184 (186)
70 PLN02796 D-glycerate 3-kinase 84.8 5.6 0.00012 40.9 9.2 111 138-278 8-136 (347)
71 TIGR01313 therm_gnt_kin carboh 84.7 0.6 1.3E-05 40.7 2.0 24 249-272 1-25 (163)
72 TIGR00176 mobB molybdopterin-g 84.6 0.62 1.3E-05 41.8 2.1 28 249-276 2-33 (155)
73 cd00464 SK Shikimate kinase (S 84.5 0.73 1.6E-05 39.2 2.4 26 249-274 2-28 (154)
74 TIGR03263 guanyl_kin guanylate 84.4 0.79 1.7E-05 40.4 2.6 30 249-278 4-34 (180)
75 PF13521 AAA_28: AAA domain; P 84.2 0.32 7E-06 42.6 0.1 28 249-281 2-29 (163)
76 cd01821 Rhamnogalacturan_acety 84.2 4.3 9.4E-05 36.3 7.3 55 144-198 93-162 (198)
77 PRK06526 transposase; Provisio 84.0 0.67 1.4E-05 44.9 2.1 50 216-276 79-132 (254)
78 PRK12296 obgE GTPase CgtA; Rev 83.8 3.4 7.3E-05 44.3 7.4 53 227-279 136-192 (500)
79 PRK06217 hypothetical protein; 83.3 0.83 1.8E-05 41.1 2.4 26 249-274 4-30 (183)
80 PF13238 AAA_18: AAA domain; P 83.2 0.48 1E-05 38.6 0.7 22 249-270 1-22 (129)
81 cd01428 ADK Adenylate kinase ( 82.9 0.97 2.1E-05 40.1 2.6 28 249-276 2-30 (194)
82 TIGR00174 miaA tRNA isopenteny 82.6 2.8 6.1E-05 41.8 5.9 49 249-298 2-60 (287)
83 PF07728 AAA_5: AAA domain (dy 82.6 0.96 2.1E-05 38.3 2.4 93 248-376 1-94 (139)
84 cd02027 APSK Adenosine 5'-phos 82.5 7.8 0.00017 34.1 8.1 26 249-274 2-31 (149)
85 PRK00300 gmk guanylate kinase; 82.1 0.8 1.7E-05 41.3 1.8 21 249-269 8-28 (205)
86 PRK07261 topology modulation p 82.0 1 2.2E-05 40.6 2.4 26 249-274 3-29 (171)
87 KOG3327 Thymidylate kinase/ade 81.9 5.9 0.00013 38.1 7.5 86 276-374 110-196 (208)
88 PLN02165 adenylate isopentenyl 81.8 1.6 3.4E-05 44.7 3.9 90 249-353 46-138 (334)
89 COG2019 AdkA Archaeal adenylat 81.2 12 0.00026 35.7 9.1 117 249-372 7-187 (189)
90 PRK00023 cmk cytidylate kinase 81.1 0.75 1.6E-05 43.5 1.3 100 249-355 7-129 (225)
91 PF01202 SKI: Shikimate kinase 81.0 8.7 0.00019 33.9 7.9 143 175-371 10-157 (158)
92 cd00757 ThiF_MoeB_HesA_family 81.0 6.5 0.00014 37.0 7.5 81 96-188 61-142 (228)
93 TIGR01526 nadR_NMN_Atrans nico 81.0 1.7 3.6E-05 43.5 3.8 26 248-273 164-190 (325)
94 cd00009 AAA The AAA+ (ATPases 80.5 1.3 2.7E-05 35.6 2.2 22 248-269 21-42 (151)
95 TIGR01663 PNK-3'Pase polynucle 80.3 8.1 0.00017 41.7 8.8 28 249-276 372-400 (526)
96 cd02020 CMPK Cytidine monophos 80.2 1.3 2.7E-05 37.2 2.2 25 249-273 2-27 (147)
97 PF03205 MobB: Molybdopterin g 79.7 1.1 2.5E-05 39.5 1.9 26 249-274 3-32 (140)
98 PRK08356 hypothetical protein; 79.7 1.2 2.6E-05 40.6 2.1 24 249-272 8-31 (195)
99 PRK00023 cmk cytidylate kinase 79.6 8.1 0.00018 36.6 7.7 72 295-374 143-222 (225)
100 PRK00279 adk adenylate kinase; 79.5 1.4 3E-05 40.7 2.5 28 249-276 3-31 (215)
101 cd01483 E1_enzyme_family Super 79.5 12 0.00026 32.2 8.1 81 98-190 41-122 (143)
102 TIGR00696 wecB_tagA_cpsF bacte 79.1 14 0.00031 34.2 8.9 101 95-204 46-147 (177)
103 PRK00771 signal recognition pa 79.0 1.4 3E-05 46.4 2.5 30 247-276 96-129 (437)
104 PF08283 Gemini_AL1_M: Geminiv 79.0 1.1 2.3E-05 38.9 1.4 17 244-260 88-104 (106)
105 PF13401 AAA_22: AAA domain; P 78.7 2.8 6.1E-05 34.5 3.8 104 249-372 7-113 (131)
106 COG3598 RepA RecA-family ATPas 78.5 8.5 0.00018 40.1 7.8 53 251-320 94-156 (402)
107 PF06745 KaiC: KaiC; InterPro 78.5 3.6 7.7E-05 38.0 4.8 24 247-270 20-43 (226)
108 cd01876 YihA_EngB The YihA (En 78.2 1.5 3.2E-05 36.4 2.1 25 248-272 1-25 (170)
109 PRK08328 hypothetical protein; 78.1 5.9 0.00013 37.7 6.3 79 97-187 68-148 (231)
110 cd01835 SGNH_hydrolase_like_3 77.8 5.4 0.00012 35.4 5.6 48 147-194 101-161 (193)
111 PRK12299 obgE GTPase CgtA; Rev 77.8 3.3 7.1E-05 41.8 4.7 34 246-279 158-191 (335)
112 PF02223 Thymidylate_kin: Thym 77.1 8.4 0.00018 34.3 6.6 68 292-367 118-186 (186)
113 cd01394 radB RadB. The archaea 77.0 7.1 0.00015 35.7 6.3 27 242-268 14-41 (218)
114 PRK00889 adenylylsulfate kinas 76.9 17 0.00036 32.2 8.4 20 249-268 7-26 (175)
115 PRK14531 adenylate kinase; Pro 76.2 1.9 4.2E-05 38.8 2.3 26 248-273 4-30 (183)
116 PRK12338 hypothetical protein; 76.2 16 0.00036 37.1 9.1 34 339-375 173-206 (319)
117 COG2804 PulE Type II secretory 76.2 6.9 0.00015 42.2 6.7 87 103-201 308-394 (500)
118 PRK13602 putative ribosomal pr 75.6 13 0.00029 30.3 6.8 54 149-204 18-73 (82)
119 PF13671 AAA_33: AAA domain; P 75.6 2 4.2E-05 36.1 2.1 26 249-274 2-28 (143)
120 TIGR02355 moeB molybdopterin s 75.3 12 0.00026 36.0 7.6 78 97-187 65-144 (240)
121 PLN02924 thymidylate kinase 75.1 10 0.00023 36.0 7.0 74 292-378 135-208 (220)
122 cd03115 SRP The signal recogni 75.1 2 4.4E-05 37.8 2.1 29 249-277 3-35 (173)
123 cd02023 UMPK Uridine monophosp 75.0 2 4.3E-05 38.8 2.1 21 249-269 2-22 (198)
124 PRK05690 molybdopterin biosynt 74.3 12 0.00026 36.0 7.3 79 97-187 73-152 (245)
125 cd06533 Glyco_transf_WecG_TagA 74.2 19 0.00041 32.8 8.2 102 95-204 44-146 (171)
126 PRK01184 hypothetical protein; 74.2 2.1 4.6E-05 38.1 2.1 27 249-275 4-30 (184)
127 TIGR02356 adenyl_thiF thiazole 73.8 14 0.00029 34.4 7.3 42 144-189 102-143 (202)
128 PRK08118 topology modulation p 73.8 2.3 5E-05 38.3 2.2 25 249-273 4-29 (167)
129 PRK05703 flhF flagellar biosyn 73.7 8.9 0.00019 40.0 6.7 88 248-361 223-313 (424)
130 TIGR03015 pepcterm_ATPase puta 73.6 6.1 0.00013 36.9 5.1 38 222-268 28-65 (269)
131 cd01918 HprK_C HprK/P, the bif 73.6 2.6 5.6E-05 38.3 2.4 24 249-272 17-40 (149)
132 PRK00081 coaE dephospho-CoA ki 73.5 2.5 5.5E-05 38.7 2.4 26 249-274 5-30 (194)
133 cd02019 NK Nucleoside/nucleoti 73.1 2.7 5.9E-05 32.4 2.2 26 249-274 2-29 (69)
134 smart00382 AAA ATPases associa 73.1 2.1 4.6E-05 33.6 1.6 21 249-269 5-25 (148)
135 PLN02748 tRNA dimethylallyltra 72.2 2.4 5.2E-05 45.1 2.2 27 249-275 25-52 (468)
136 PRK13974 thymidylate kinase; P 72.2 20 0.00043 33.3 8.0 72 293-373 135-206 (212)
137 cd00984 DnaB_C DnaB helicase C 72.0 27 0.00059 32.2 8.9 29 243-271 9-38 (242)
138 cd02022 DPCK Dephospho-coenzym 71.9 2.8 6.2E-05 37.7 2.3 28 249-276 2-29 (179)
139 PRK08939 primosomal protein Dn 71.9 3.6 7.8E-05 41.0 3.2 46 227-277 142-193 (306)
140 TIGR00041 DTMP_kinase thymidyl 71.4 9.5 0.00021 34.0 5.6 68 293-367 128-195 (195)
141 cd02034 CooC The accessory pro 71.4 3.2 6.9E-05 35.6 2.4 26 249-274 2-31 (116)
142 PRK07714 hypothetical protein; 71.2 21 0.00045 29.9 7.2 43 160-204 38-80 (100)
143 PRK13695 putative NTPase; Prov 71.2 34 0.00075 30.3 9.1 29 248-276 2-34 (174)
144 PRK12724 flagellar biosynthesi 71.2 17 0.00037 38.6 8.1 20 249-268 226-245 (432)
145 PTZ00088 adenylate kinase 1; P 71.1 3 6.5E-05 39.9 2.4 26 249-274 9-35 (229)
146 cd01827 sialate_O-acetylestera 71.1 7.2 0.00016 34.2 4.6 48 145-192 93-158 (188)
147 cd03116 MobB Molybdenum is an 71.1 3.1 6.6E-05 37.7 2.3 30 249-278 4-37 (159)
148 PRK08181 transposase; Validate 70.7 3.2 7E-05 40.8 2.6 52 216-278 86-142 (269)
149 cd01485 E1-1_like Ubiquitin ac 70.5 18 0.0004 33.6 7.4 81 98-188 61-144 (198)
150 PRK07933 thymidylate kinase; V 70.5 25 0.00054 33.0 8.3 73 293-371 133-211 (213)
151 PRK06547 hypothetical protein; 70.4 2.9 6.3E-05 38.1 2.1 21 249-269 17-38 (172)
152 cd01898 Obg Obg subfamily. Th 70.3 3 6.5E-05 35.5 2.0 32 247-278 1-32 (170)
153 COG1102 Cmk Cytidylate kinase 70.2 3.6 7.8E-05 38.8 2.6 119 249-377 3-176 (179)
154 PRK06683 hypothetical protein; 70.2 20 0.00044 29.4 6.7 52 150-203 19-72 (82)
155 PRK14729 miaA tRNA delta(2)-is 70.2 3.1 6.8E-05 41.7 2.4 22 249-270 7-28 (300)
156 KOG3347 Predicted nucleotide k 70.2 53 0.0011 31.0 10.1 109 247-371 8-164 (176)
157 cd04122 Rab14 Rab14 subfamily. 69.9 9.1 0.0002 32.9 4.9 35 248-283 4-38 (166)
158 PF00448 SRP54: SRP54-type pro 69.9 3 6.4E-05 38.9 2.0 19 249-267 4-22 (196)
159 cd01832 SGNH_hydrolase_like_1 69.8 12 0.00025 32.8 5.6 50 144-193 91-156 (185)
160 PRK10792 bifunctional 5,10-met 69.6 59 0.0013 32.7 11.1 147 96-273 34-186 (285)
161 PRK10751 molybdopterin-guanine 69.5 3.1 6.8E-05 38.5 2.1 29 249-277 9-41 (173)
162 PF04665 Pox_A32: Poxvirus A32 68.9 3.1 6.7E-05 40.7 2.0 32 248-279 15-47 (241)
163 PRK12723 flagellar biosynthesi 68.8 8 0.00017 40.1 5.1 22 247-268 175-196 (388)
164 cd04112 Rab26 Rab26 subfamily. 68.8 12 0.00027 33.3 5.7 125 249-374 3-165 (191)
165 cd01838 Isoamyl_acetate_hydrol 68.5 17 0.00037 31.6 6.5 26 169-194 143-168 (199)
166 cd01896 DRG The developmentall 68.4 5.4 0.00012 37.8 3.5 42 247-288 1-42 (233)
167 TIGR02640 gas_vesic_GvpN gas v 68.3 3.7 8.1E-05 39.4 2.4 28 247-274 22-50 (262)
168 COG0563 Adk Adenylate kinase a 68.1 3.4 7.5E-05 38.1 2.0 21 249-269 3-23 (178)
169 PRK13601 putative L7Ae-like ri 68.1 26 0.00057 28.9 7.0 52 150-203 16-69 (82)
170 PRK06067 flagellar accessory p 67.7 2.5 5.5E-05 39.3 1.1 37 242-278 20-61 (234)
171 PLN03187 meiotic recombination 67.6 29 0.00063 35.5 8.7 25 243-267 122-147 (344)
172 TIGR00455 apsK adenylylsulfate 67.4 24 0.00052 31.5 7.3 22 248-269 20-41 (184)
173 TIGR01241 FtsH_fam ATP-depende 67.1 3.9 8.5E-05 42.9 2.5 20 249-268 91-110 (495)
174 cd02028 UMPK_like Uridine mono 67.0 3.7 7.9E-05 37.4 2.0 29 249-277 2-34 (179)
175 PF13433 Peripla_BP_5: Peripla 66.6 28 0.0006 36.2 8.3 74 98-179 135-211 (363)
176 COG1341 Predicted GTPase or GT 65.7 4.3 9.3E-05 42.5 2.4 57 230-287 58-121 (398)
177 cd01492 Aos1_SUMO Ubiquitin ac 65.3 20 0.00044 33.4 6.5 77 98-187 63-140 (197)
178 cd02021 GntK Gluconate kinase 65.2 5 0.00011 34.3 2.4 21 249-269 2-22 (150)
179 TIGR03420 DnaA_homol_Hda DnaA 65.2 3.6 7.9E-05 37.4 1.6 23 247-269 39-61 (226)
180 PRK13976 thymidylate kinase; P 65.1 36 0.00077 32.0 8.2 72 293-374 125-202 (209)
181 PF01745 IPT: Isopentenyl tran 64.9 3.9 8.3E-05 40.1 1.7 65 249-314 4-84 (233)
182 PRK10867 signal recognition pa 64.7 4.5 9.8E-05 42.5 2.4 32 247-278 101-137 (433)
183 cd00755 YgdL_like Family of ac 64.6 35 0.00075 32.9 8.2 83 97-190 52-135 (231)
184 PRK14526 adenylate kinase; Pro 64.6 4.3 9.2E-05 38.3 2.0 24 249-272 3-27 (211)
185 PRK09183 transposase/IS protei 64.4 4.8 0.0001 39.0 2.3 48 218-276 85-136 (259)
186 PF01695 IstB_IS21: IstB-like 64.4 4.3 9.2E-05 37.2 1.9 51 217-278 29-83 (178)
187 PRK08762 molybdopterin biosynt 64.3 25 0.00053 35.8 7.5 79 98-188 177-256 (376)
188 PRK03992 proteasome-activating 64.3 8.4 0.00018 39.4 4.2 47 217-268 135-187 (389)
189 TIGR01242 26Sp45 26S proteasom 64.2 7.2 0.00016 39.1 3.6 46 218-268 127-178 (364)
190 PRK03846 adenylylsulfate kinas 64.1 15 0.00032 33.5 5.4 22 248-269 26-47 (198)
191 cd04159 Arl10_like Arl10-like 64.1 5 0.00011 33.0 2.1 22 248-269 1-22 (159)
192 TIGR03499 FlhF flagellar biosy 64.0 4.7 0.0001 39.4 2.2 21 248-268 196-216 (282)
193 cd04501 SGNH_hydrolase_like_4 63.7 22 0.00048 31.1 6.2 52 144-195 82-151 (183)
194 PHA02530 pseT polynucleotide k 63.6 5.3 0.00011 38.3 2.4 21 249-269 5-25 (300)
195 PRK14974 cell division protein 63.6 5.5 0.00012 40.5 2.6 28 248-275 142-173 (336)
196 PRK07773 replicative DNA helic 63.2 57 0.0012 37.3 10.7 109 242-373 212-325 (886)
197 TIGR00231 small_GTP small GTP- 63.1 5.3 0.00011 32.2 2.0 34 247-280 2-35 (161)
198 PRK14731 coaE dephospho-CoA ki 62.9 5.6 0.00012 36.9 2.4 27 249-275 8-34 (208)
199 PRK14179 bifunctional 5,10-met 62.7 1.2E+02 0.0027 30.4 11.8 149 95-274 32-186 (284)
200 PRK14494 putative molybdopteri 62.6 5 0.00011 38.8 2.1 28 249-276 4-35 (229)
201 TIGR02880 cbbX_cfxQ probable R 62.5 3.6 7.8E-05 40.3 1.1 26 247-272 59-88 (284)
202 PRK05583 ribosomal protein L7A 62.0 38 0.00083 28.9 7.1 43 160-204 37-79 (104)
203 TIGR02236 recomb_radA DNA repa 61.9 5.8 0.00013 38.7 2.4 25 243-267 91-116 (310)
204 PRK10528 multifunctional acyl- 61.6 18 0.00039 32.8 5.4 48 144-191 94-151 (191)
205 cd01840 SGNH_hydrolase_yrhL_li 61.6 17 0.00036 31.6 5.0 86 99-191 25-119 (150)
206 PRK09267 flavodoxin FldA; Vali 61.1 70 0.0015 28.3 9.0 71 244-315 78-157 (169)
207 PRK08727 hypothetical protein; 61.1 5.7 0.00012 37.5 2.2 31 249-279 44-78 (233)
208 TIGR00064 ftsY signal recognit 61.0 5.8 0.00013 38.8 2.2 26 249-274 75-104 (272)
209 cd01124 KaiC KaiC is a circadi 60.6 4 8.6E-05 35.8 0.9 26 249-274 2-31 (187)
210 cd00879 Sar1 Sar1 subfamily. 60.5 42 0.00091 29.4 7.4 23 246-268 19-41 (190)
211 cd03114 ArgK-like The function 60.4 6.4 0.00014 34.9 2.2 26 249-274 2-31 (148)
212 KOG0780 Signal recognition par 60.4 6.4 0.00014 41.7 2.5 40 235-274 87-133 (483)
213 TIGR03881 KaiC_arch_4 KaiC dom 60.2 4.2 9.2E-05 37.5 1.1 36 243-278 16-56 (229)
214 PRK03692 putative UDP-N-acetyl 60.1 42 0.00091 32.7 7.9 101 95-204 103-204 (243)
215 PRK13973 thymidylate kinase; P 59.8 29 0.00063 32.2 6.6 74 292-374 128-207 (213)
216 cd01123 Rad51_DMC1_radA Rad51_ 59.8 5.5 0.00012 36.6 1.7 21 249-269 22-42 (235)
217 TIGR02237 recomb_radB DNA repa 59.7 7.6 0.00016 35.2 2.6 37 242-278 7-48 (209)
218 PRK08306 dipicolinate synthase 59.6 16 0.00035 36.1 5.1 93 150-274 87-179 (296)
219 PRK14489 putative bifunctional 59.6 6.3 0.00014 40.0 2.3 122 137-277 102-240 (366)
220 PF08477 Miro: Miro-like prote 59.5 5.3 0.00012 32.3 1.5 24 249-272 2-25 (119)
221 PRK05595 replicative DNA helic 59.4 79 0.0017 32.9 10.3 106 242-371 196-307 (444)
222 PRK09361 radB DNA repair and r 59.2 7.7 0.00017 35.7 2.6 37 242-278 18-59 (225)
223 PRK14722 flhF flagellar biosyn 59.2 19 0.00042 37.3 5.7 22 247-268 138-159 (374)
224 PHA02244 ATPase-like protein 59.0 5 0.00011 41.9 1.4 22 248-269 121-142 (383)
225 PRK08533 flagellar accessory p 59.0 7.6 0.00016 36.8 2.6 31 247-277 25-59 (230)
226 PF02374 ArsA_ATPase: Anion-tr 58.8 25 0.00055 35.0 6.3 66 249-314 4-82 (305)
227 PRK12298 obgE GTPase CgtA; Rev 58.7 11 0.00024 38.9 3.9 35 246-280 159-193 (390)
228 PRK07283 hypothetical protein; 58.7 45 0.00097 28.0 6.9 41 160-202 38-78 (98)
229 COG3839 MalK ABC-type sugar tr 58.6 4.6 9.9E-05 41.4 1.1 19 249-267 32-50 (338)
230 COG0283 Cmk Cytidylate kinase 58.6 66 0.0014 31.5 8.8 68 297-372 142-218 (222)
231 PRK05541 adenylylsulfate kinas 58.5 5.4 0.00012 35.3 1.4 26 349-374 147-173 (176)
232 PRK14176 bifunctional 5,10-met 58.3 53 0.0012 33.1 8.5 148 95-273 38-191 (287)
233 cd01828 sialate_O-acetylestera 58.1 25 0.00055 30.4 5.5 48 145-192 72-134 (169)
234 PRK14190 bifunctional 5,10-met 58.0 89 0.0019 31.4 10.0 149 95-274 32-186 (284)
235 PRK04175 rpl7ae 50S ribosomal 58.0 50 0.0011 28.9 7.3 42 160-203 50-92 (122)
236 PRK14171 bifunctional 5,10-met 57.8 96 0.0021 31.3 10.1 150 95-273 32-186 (288)
237 cd01825 SGNH_hydrolase_peri1 S 57.6 30 0.00065 30.1 6.0 27 168-194 123-149 (189)
238 PRK14734 coaE dephospho-CoA ki 57.6 8 0.00017 35.9 2.5 28 249-276 4-31 (200)
239 PF09439 SRPRB: Signal recogni 57.5 5.5 0.00012 37.3 1.3 22 248-269 5-26 (181)
240 PRK14183 bifunctional 5,10-met 57.4 1.5E+02 0.0032 29.9 11.4 148 95-273 31-184 (281)
241 PRK14186 bifunctional 5,10-met 57.3 56 0.0012 33.0 8.5 148 95-273 32-185 (297)
242 PRK14495 putative molybdopteri 57.3 7.5 0.00016 41.4 2.4 29 249-277 4-36 (452)
243 TIGR02039 CysD sulfate adenyly 57.2 2E+02 0.0044 29.0 12.3 200 109-341 6-268 (294)
244 PF11009 DUF2847: Protein of u 57.1 20 0.00043 31.1 4.6 65 140-204 3-77 (105)
245 PRK00698 tmk thymidylate kinas 57.1 73 0.0016 28.4 8.4 73 293-373 128-202 (205)
246 TIGR03574 selen_PSTK L-seryl-t 57.1 7.1 0.00015 36.9 2.0 20 249-268 2-21 (249)
247 PRK06696 uridine kinase; Valid 57.1 8.1 0.00018 36.0 2.4 29 249-277 25-57 (223)
248 PF00910 RNA_helicase: RNA hel 57.0 5.8 0.00013 32.9 1.3 21 249-269 1-21 (107)
249 PRK04301 radA DNA repair and r 56.9 9.2 0.0002 37.7 2.9 26 243-268 98-124 (317)
250 cd01822 Lysophospholipase_L1_l 56.8 82 0.0018 27.0 8.5 46 144-189 87-142 (177)
251 PF13407 Peripla_BP_4: Peripla 56.5 22 0.00047 32.4 5.0 72 111-191 16-89 (257)
252 CHL00200 trpA tryptophan synth 56.5 23 0.0005 34.8 5.5 118 134-254 93-232 (263)
253 PRK09302 circadian clock prote 56.5 34 0.00074 36.0 7.1 36 242-277 268-308 (509)
254 KOG0744 AAA+-type ATPase [Post 56.4 7.4 0.00016 40.6 2.2 119 227-357 160-305 (423)
255 TIGR01650 PD_CobS cobaltochela 56.2 7.8 0.00017 39.5 2.3 46 226-281 54-100 (327)
256 PRK05428 HPr kinase/phosphoryl 56.1 28 0.0006 35.4 6.1 100 143-272 67-172 (308)
257 KOG3354 Gluconate kinase [Carb 56.1 8.4 0.00018 36.5 2.3 24 249-272 15-39 (191)
258 PRK14180 bifunctional 5,10-met 55.9 78 0.0017 31.8 9.2 149 95-273 31-185 (282)
259 cd03283 ABC_MutS-like MutS-lik 55.8 9.4 0.0002 35.4 2.6 25 249-273 28-58 (199)
260 cd01834 SGNH_hydrolase_like_2 55.8 37 0.0008 29.3 6.2 29 169-197 134-162 (191)
261 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 55.7 7.8 0.00017 33.1 1.9 26 248-273 4-29 (166)
262 cd01489 Uba2_SUMO Ubiquitin ac 55.6 34 0.00074 34.6 6.7 81 97-188 40-121 (312)
263 PRK15424 propionate catabolism 55.6 27 0.00059 37.8 6.3 41 247-288 243-293 (538)
264 cd04119 RJL RJL (RabJ-Like) su 55.3 27 0.00059 29.2 5.1 23 249-271 3-25 (168)
265 PRK14169 bifunctional 5,10-met 55.3 32 0.00069 34.6 6.3 149 95-274 30-184 (282)
266 PF12627 PolyA_pol_RNAbd: Prob 55.0 9.3 0.0002 28.7 2.0 33 298-339 1-33 (64)
267 PRK14192 bifunctional 5,10-met 54.9 1.3E+02 0.0028 30.0 10.5 145 95-273 33-186 (283)
268 PRK10416 signal recognition pa 54.8 8.5 0.00018 38.7 2.3 19 249-267 117-135 (318)
269 TIGR00152 dephospho-CoA kinase 54.7 9 0.0002 34.5 2.2 28 249-276 2-30 (188)
270 PRK15116 sulfur acceptor prote 54.7 65 0.0014 32.0 8.3 82 98-190 72-154 (268)
271 smart00178 SAR Sar1p-like memb 54.5 55 0.0012 29.2 7.2 22 247-268 18-39 (184)
272 TIGR00635 ruvB Holliday juncti 54.5 7.9 0.00017 37.2 1.9 25 248-272 32-57 (305)
273 PRK06835 DNA replication prote 54.4 12 0.00026 37.9 3.3 44 228-278 172-219 (329)
274 TIGR02881 spore_V_K stage V sp 54.1 7.6 0.00016 37.1 1.7 21 248-268 44-64 (261)
275 PRK14178 bifunctional 5,10-met 54.1 2.4E+02 0.0053 28.3 13.1 151 94-275 25-181 (279)
276 COG4525 TauB ABC-type taurine 53.9 7.9 0.00017 38.0 1.8 19 249-267 34-52 (259)
277 PRK05600 thiamine biosynthesis 53.9 39 0.00085 34.7 6.9 78 97-187 82-161 (370)
278 TIGR01425 SRP54_euk signal rec 53.9 8.5 0.00018 40.6 2.2 30 247-276 101-134 (429)
279 PF01583 APS_kinase: Adenylyls 53.7 8.3 0.00018 35.3 1.8 21 249-269 5-25 (156)
280 TIGR03878 thermo_KaiC_2 KaiC d 53.7 9.6 0.00021 36.7 2.4 37 242-278 31-72 (259)
281 cd01120 RecA-like_NTPases RecA 53.6 8.3 0.00018 32.0 1.7 20 249-268 2-21 (165)
282 PLN02840 tRNA dimethylallyltra 53.5 9 0.0002 40.4 2.3 25 249-273 24-49 (421)
283 TIGR03128 RuMP_HxlA 3-hexulose 53.5 1.4E+02 0.003 27.2 9.8 82 100-191 25-112 (206)
284 PF02421 FeoB_N: Ferrous iron 53.5 9.7 0.00021 34.7 2.2 32 249-280 3-34 (156)
285 PRK11889 flhF flagellar biosyn 53.4 63 0.0014 34.5 8.4 21 247-267 242-262 (436)
286 PRK07878 molybdopterin biosynt 53.3 47 0.001 34.2 7.4 79 97-187 83-162 (392)
287 TIGR00679 hpr-ser Hpr(Ser) kin 53.2 35 0.00076 34.7 6.3 102 143-272 67-172 (304)
288 PRK06893 DNA replication initi 53.2 9.7 0.00021 35.8 2.3 31 249-279 42-76 (229)
289 PF13472 Lipase_GDSL_2: GDSL-l 53.1 40 0.00086 28.0 5.7 48 145-192 89-153 (179)
290 PTZ00361 26 proteosome regulat 53.1 8.7 0.00019 40.5 2.1 39 227-269 197-240 (438)
291 cd01829 SGNH_hydrolase_peri2 S 53.0 36 0.00079 30.1 5.8 48 145-192 95-153 (200)
292 TIGR00959 ffh signal recogniti 52.9 9.2 0.0002 40.2 2.2 30 247-276 100-134 (428)
293 PRK05201 hslU ATP-dependent pr 52.7 7 0.00015 41.6 1.3 31 246-280 50-80 (443)
294 PRK05800 cobU adenosylcobinami 52.6 10 0.00022 34.6 2.2 21 249-269 4-24 (170)
295 PF03698 UPF0180: Uncharacteri 52.6 15 0.00032 30.6 2.9 76 252-371 4-79 (80)
296 cd01897 NOG NOG1 is a nucleola 52.6 10 0.00022 32.3 2.1 30 249-278 3-32 (168)
297 PF13479 AAA_24: AAA domain 52.4 7.7 0.00017 36.1 1.5 18 249-266 6-23 (213)
298 cd00820 PEPCK_HprK Phosphoenol 52.2 9.8 0.00021 32.8 1.9 19 249-267 18-36 (107)
299 TIGR03600 phage_DnaB phage rep 52.1 68 0.0015 32.9 8.3 26 242-267 189-215 (421)
300 cd01122 GP4d_helicase GP4d_hel 51.9 1.2E+02 0.0025 28.7 9.3 35 242-276 25-65 (271)
301 COG0536 Obg Predicted GTPase [ 51.9 31 0.00066 36.0 5.7 123 245-372 158-302 (369)
302 PTZ00202 tuzin; Provisional 51.8 40 0.00086 36.8 6.7 99 226-357 271-369 (550)
303 COG1125 OpuBA ABC-type proline 51.8 7.3 0.00016 39.4 1.2 14 249-262 30-43 (309)
304 cd01839 SGNH_arylesterase_like 51.5 51 0.0011 29.7 6.6 25 168-192 155-179 (208)
305 TIGR03029 EpsG chain length de 51.5 23 0.00049 33.7 4.5 112 140-274 14-136 (274)
306 COG1660 Predicted P-loop-conta 51.5 59 0.0013 32.9 7.4 119 249-373 4-157 (286)
307 PF01926 MMR_HSR1: 50S ribosom 51.5 10 0.00022 31.0 1.9 33 248-280 1-34 (116)
308 cd04118 Rab24 Rab24 subfamily. 51.5 9.8 0.00021 33.6 1.9 26 248-273 2-27 (193)
309 COG3842 PotA ABC-type spermidi 51.4 8.6 0.00019 39.6 1.7 24 244-267 28-52 (352)
310 PRK14172 bifunctional 5,10-met 51.3 1.6E+02 0.0034 29.7 10.4 147 96-273 33-185 (278)
311 PF02224 Cytidylate_kin: Cytid 51.1 94 0.002 28.8 8.2 67 296-369 83-157 (157)
312 cd01860 Rab5_related Rab5-rela 51.0 37 0.0008 28.6 5.3 24 247-270 2-25 (163)
313 PRK14166 bifunctional 5,10-met 51.0 1.5E+02 0.0033 29.8 10.3 150 95-274 30-185 (282)
314 PRK05480 uridine/cytidine kina 50.8 8.7 0.00019 35.1 1.5 20 249-268 9-28 (209)
315 TIGR02533 type_II_gspE general 50.8 28 0.00062 37.0 5.5 73 103-187 292-364 (486)
316 COG3265 GntK Gluconate kinase 50.7 7.4 0.00016 36.2 1.0 21 252-272 1-22 (161)
317 PRK13125 trpA tryptophan synth 50.7 27 0.00058 33.4 4.9 111 139-253 85-214 (244)
318 PRK14730 coaE dephospho-CoA ki 50.5 11 0.00024 34.8 2.2 27 249-275 4-31 (195)
319 cd00544 CobU Adenosylcobinamid 50.4 12 0.00027 34.1 2.4 28 249-276 2-30 (169)
320 PRK12402 replication factor C 50.2 9.5 0.00021 36.8 1.7 22 248-269 38-59 (337)
321 cd01878 HflX HflX subfamily. 50.2 9.6 0.00021 34.1 1.7 31 247-277 42-72 (204)
322 PRK14191 bifunctional 5,10-met 50.1 2.9E+02 0.0062 27.9 12.3 148 95-273 31-184 (285)
323 PRK01018 50S ribosomal protein 50.0 86 0.0019 26.4 7.3 54 150-204 24-79 (99)
324 PRK12475 thiamine/molybdopteri 49.9 55 0.0012 33.2 7.1 80 97-188 65-147 (338)
325 PRK14170 bifunctional 5,10-met 49.8 61 0.0013 32.6 7.3 149 95-274 31-185 (284)
326 PRK14175 bifunctional 5,10-met 49.8 1.6E+02 0.0035 29.7 10.2 149 95-274 32-186 (286)
327 PLN02674 adenylate kinase 49.8 11 0.00023 36.8 2.0 26 248-273 33-59 (244)
328 cd01841 NnaC_like NnaC (CMP-Ne 49.7 47 0.001 28.8 5.8 27 168-194 116-142 (174)
329 cd01393 recA_like RecA is a b 49.7 11 0.00025 34.3 2.1 25 243-267 15-40 (226)
330 PRK08116 hypothetical protein; 49.5 12 0.00026 36.5 2.3 28 249-276 117-148 (268)
331 PRK05642 DNA replication initi 49.5 12 0.00026 35.5 2.2 30 247-276 46-79 (234)
332 PRK14529 adenylate kinase; Pro 49.3 11 0.00023 36.3 1.9 25 249-273 3-28 (223)
333 PRK03094 hypothetical protein; 49.2 18 0.0004 30.1 3.0 76 252-371 4-79 (80)
334 PRK14493 putative bifunctional 49.1 11 0.00025 37.1 2.1 31 249-280 4-38 (274)
335 PRK14189 bifunctional 5,10-met 49.0 1.2E+02 0.0027 30.5 9.3 148 95-274 32-186 (285)
336 PRK07411 hypothetical protein; 48.8 56 0.0012 33.7 7.1 78 97-187 79-158 (390)
337 cd02024 NRK1 Nicotinamide ribo 48.7 9.7 0.00021 35.5 1.5 21 249-269 2-22 (187)
338 TIGR00235 udk uridine kinase. 48.5 9.7 0.00021 34.9 1.5 21 249-269 9-29 (207)
339 COG1618 Predicted nucleotide k 48.4 18 0.0004 34.2 3.2 44 249-301 8-55 (179)
340 PRK14478 nitrogenase molybdenu 48.3 3.6E+02 0.0079 28.6 13.6 108 143-274 103-221 (475)
341 PRK09519 recA DNA recombinatio 48.2 25 0.00054 40.0 4.8 69 189-267 11-81 (790)
342 PRK07667 uridine kinase; Provi 48.2 13 0.00028 34.0 2.2 20 249-268 20-39 (193)
343 PRK05342 clpX ATP-dependent pr 48.1 10 0.00022 39.6 1.7 35 242-280 104-138 (412)
344 PF01121 CoaE: Dephospho-CoA k 48.0 13 0.00028 34.4 2.2 32 249-280 3-34 (180)
345 PRK05597 molybdopterin biosynt 47.7 62 0.0013 32.9 7.1 79 97-187 69-148 (355)
346 cd04155 Arl3 Arl3 subfamily. 47.6 12 0.00026 32.1 1.8 24 246-269 14-37 (173)
347 TIGR00750 lao LAO/AO transport 47.5 18 0.00039 35.6 3.2 31 248-278 36-70 (300)
348 cd04111 Rab39 Rab39 subfamily. 47.4 1E+02 0.0022 28.4 8.0 35 339-374 131-168 (211)
349 PRK14185 bifunctional 5,10-met 47.3 2.1E+02 0.0045 29.0 10.7 146 95-271 31-182 (293)
350 PRK06851 hypothetical protein; 47.3 28 0.00061 36.1 4.7 118 249-373 217-361 (367)
351 PTZ00106 60S ribosomal protein 47.3 80 0.0017 27.2 6.7 44 160-204 45-88 (108)
352 PF01656 CbiA: CobQ/CobB/MinD/ 47.2 13 0.00028 32.5 2.0 27 252-278 5-35 (195)
353 PF07905 PucR: Purine cataboli 47.2 35 0.00077 29.2 4.6 52 137-188 50-105 (123)
354 PLN03108 Rab family protein; P 47.2 38 0.00081 31.1 5.1 24 248-271 8-31 (210)
355 cd01899 Ygr210 Ygr210 subfamil 47.1 11 0.00024 37.9 1.8 32 249-280 1-32 (318)
356 cd00157 Rho Rho (Ras homology) 46.9 14 0.0003 31.4 2.1 23 249-271 3-25 (171)
357 cd01836 FeeA_FeeB_like SGNH_hy 46.8 40 0.00086 29.7 5.0 26 168-193 136-162 (191)
358 TIGR00041 DTMP_kinase thymidyl 46.8 14 0.00031 32.9 2.2 28 249-276 6-37 (195)
359 PF05707 Zot: Zonular occluden 46.8 13 0.00028 34.0 2.0 31 249-279 3-40 (193)
360 COG0552 FtsY Signal recognitio 46.6 15 0.00032 37.9 2.6 26 249-274 142-171 (340)
361 COG0476 ThiF Dinucleotide-util 46.6 71 0.0015 30.4 7.0 82 96-188 70-151 (254)
362 PRK08760 replicative DNA helic 46.3 1.1E+02 0.0024 32.6 8.9 108 241-371 223-335 (476)
363 PLN02318 phosphoribulokinase/u 46.3 15 0.00032 40.9 2.6 47 216-269 42-88 (656)
364 PLN02897 tetrahydrofolate dehy 46.3 1.5E+02 0.0034 30.7 9.7 149 95-273 86-241 (345)
365 PRK14177 bifunctional 5,10-met 46.3 1.4E+02 0.0031 30.1 9.3 149 96-274 34-187 (284)
366 PRK06851 hypothetical protein; 46.2 54 0.0012 34.0 6.5 115 249-371 33-176 (367)
367 PF04670 Gtr1_RagA: Gtr1/RagA 46.2 8 0.00017 37.4 0.5 13 249-261 2-14 (232)
368 PRK14723 flhF flagellar biosyn 45.9 62 0.0013 36.8 7.4 85 249-359 188-275 (767)
369 TIGR02538 type_IV_pilB type IV 45.9 37 0.0008 36.7 5.5 78 103-192 366-443 (564)
370 cd01864 Rab19 Rab19 subfamily. 45.9 44 0.00095 28.5 5.0 20 248-267 5-24 (165)
371 PRK14181 bifunctional 5,10-met 45.8 1E+02 0.0022 31.1 8.2 146 95-270 26-177 (287)
372 PRK14194 bifunctional 5,10-met 45.8 1.2E+02 0.0026 30.8 8.8 151 95-276 33-189 (301)
373 PRK13768 GTPase; Provisional 45.6 14 0.0003 35.6 2.0 30 249-278 5-38 (253)
374 PRK08506 replicative DNA helic 45.3 2E+02 0.0044 30.5 10.7 107 242-372 187-298 (472)
375 PRK09825 idnK D-gluconate kina 45.2 12 0.00027 34.0 1.5 20 249-268 6-25 (176)
376 cd04127 Rab27A Rab27a subfamil 45.0 15 0.00032 31.8 2.0 25 248-272 6-30 (180)
377 PRK09165 replicative DNA helic 45.0 93 0.002 33.2 8.2 123 242-373 212-339 (497)
378 PTZ00170 D-ribulose-5-phosphat 44.9 2.1E+02 0.0046 27.2 9.9 25 230-254 173-202 (228)
379 PRK07933 thymidylate kinase; V 44.9 17 0.00037 34.1 2.5 28 249-276 3-34 (213)
380 TIGR02012 tigrfam_recA protein 44.8 24 0.00052 35.8 3.7 71 189-269 6-78 (321)
381 cd01537 PBP1_Repressors_Sugar_ 44.7 1.3E+02 0.0028 26.6 7.9 74 106-190 12-87 (264)
382 PRK06731 flhF flagellar biosyn 44.3 1.2E+02 0.0025 30.1 8.3 21 247-267 76-96 (270)
383 PF13191 AAA_16: AAA ATPase do 44.3 10 0.00023 32.7 0.9 19 249-267 27-45 (185)
384 PRK00698 tmk thymidylate kinas 44.2 13 0.00028 33.1 1.6 20 249-268 6-25 (205)
385 PRK00955 hypothetical protein; 44.2 50 0.0011 36.7 6.2 59 240-299 7-71 (620)
386 KOG1707 Predicted Ras related/ 44.1 43 0.00093 37.1 5.6 108 245-358 8-124 (625)
387 PF13173 AAA_14: AAA domain 44.1 14 0.0003 31.3 1.6 21 249-269 5-25 (128)
388 TIGR00376 DNA helicase, putati 44.1 20 0.00043 39.5 3.2 38 226-273 163-204 (637)
389 cd01849 YlqF_related_GTPase Yl 44.0 15 0.00032 32.0 1.9 35 246-280 100-135 (155)
390 TIGR03575 selen_PSTK_euk L-ser 44.0 15 0.00032 37.6 2.1 30 249-278 2-36 (340)
391 PTZ00035 Rad51 protein; Provis 43.9 20 0.00043 36.3 3.0 25 243-267 114-139 (337)
392 PLN02459 probable adenylate ki 43.9 14 0.00031 36.5 1.9 25 248-272 31-56 (261)
393 cd01892 Miro2 Miro2 subfamily. 43.9 15 0.00033 32.2 1.9 28 249-276 7-34 (169)
394 smart00534 MUTSac ATPase domai 43.8 17 0.00036 33.0 2.2 32 249-280 2-43 (185)
395 PRK08099 bifunctional DNA-bind 43.8 15 0.00032 38.2 2.1 24 249-272 222-246 (399)
396 PRK12377 putative replication 43.6 65 0.0014 31.4 6.3 43 227-276 89-135 (248)
397 PRK07952 DNA replication prote 43.6 16 0.00035 35.5 2.2 30 248-277 101-134 (244)
398 PF07724 AAA_2: AAA domain (Cd 43.5 12 0.00026 34.2 1.2 23 246-268 3-25 (171)
399 CHL00176 ftsH cell division pr 43.4 12 0.00027 41.1 1.5 21 249-269 219-239 (638)
400 TIGR03880 KaiC_arch_3 KaiC dom 43.4 11 0.00024 34.8 1.0 36 243-278 12-52 (224)
401 cd04726 KGPDC_HPS 3-Keto-L-gul 43.4 2E+02 0.0043 25.9 9.1 103 151-254 70-187 (202)
402 TIGR00382 clpX endopeptidase C 43.3 13 0.00028 39.0 1.5 25 244-268 114-138 (413)
403 cd06321 PBP1_ABC_sugar_binding 43.3 1.2E+02 0.0025 27.8 7.7 56 133-189 32-89 (271)
404 PLN03110 Rab GTPase; Provision 43.2 50 0.0011 30.4 5.3 25 248-272 14-38 (216)
405 COG0003 ArsA Predicted ATPase 43.2 48 0.001 33.7 5.5 66 249-315 5-82 (322)
406 TIGR03877 thermo_KaiC_1 KaiC d 43.2 11 0.00024 35.5 0.9 34 243-276 17-55 (237)
407 cd04156 ARLTS1 ARLTS1 subfamil 43.2 1.2E+02 0.0026 25.4 7.2 22 249-270 2-23 (160)
408 PRK04213 GTP-binding protein; 43.0 16 0.00034 32.6 1.9 32 247-278 10-41 (201)
409 COG1474 CDC6 Cdc6-related prot 43.0 18 0.00039 37.2 2.5 19 249-267 45-63 (366)
410 PF10662 PduV-EutP: Ethanolami 43.0 14 0.0003 33.6 1.5 115 249-367 4-141 (143)
411 PF00406 ADK: Adenylate kinase 42.9 14 0.0003 32.0 1.4 26 251-276 1-27 (151)
412 cd04157 Arl6 Arl6 subfamily. 42.9 17 0.00037 30.5 2.0 29 249-277 2-30 (162)
413 cd04106 Rab23_lke Rab23-like s 42.8 16 0.00036 30.7 1.9 21 249-269 3-23 (162)
414 TIGR01520 FruBisAldo_II_A fruc 42.5 71 0.0015 33.3 6.6 49 138-186 6-55 (357)
415 PRK04328 hypothetical protein; 42.4 11 0.00025 35.9 1.0 28 243-270 19-47 (249)
416 PRK00080 ruvB Holliday junctio 42.3 15 0.00032 36.3 1.8 26 248-273 53-79 (328)
417 cd01887 IF2_eIF5B IF2/eIF5B (i 42.3 18 0.0004 30.5 2.1 25 249-273 3-27 (168)
418 cd04164 trmE TrmE (MnmE, ThdF, 42.3 17 0.00036 30.1 1.8 30 248-277 3-33 (157)
419 PF02562 PhoH: PhoH-like prote 42.1 19 0.00042 34.3 2.4 19 249-267 22-40 (205)
420 PF05496 RuvB_N: Holliday junc 42.0 15 0.00033 36.0 1.7 33 248-280 52-87 (233)
421 cd04115 Rab33B_Rab33A Rab33B/R 42.0 17 0.00038 31.4 2.0 24 247-270 3-26 (170)
422 cd01121 Sms Sms (bacterial rad 41.9 37 0.00081 35.0 4.6 109 243-355 78-206 (372)
423 cd03285 ABC_MSH2_euk MutS2 hom 41.8 2E+02 0.0044 27.1 9.2 23 249-271 33-61 (222)
424 PF10087 DUF2325: Uncharacteri 41.8 52 0.0011 27.0 4.6 42 159-200 52-93 (97)
425 PF07475 Hpr_kinase_C: HPr Ser 41.8 15 0.00034 34.3 1.7 24 249-272 21-44 (171)
426 PF05729 NACHT: NACHT domain 41.7 17 0.00037 30.5 1.8 19 249-267 3-21 (166)
427 PRK14167 bifunctional 5,10-met 41.6 1.6E+02 0.0036 29.8 9.0 144 95-269 31-180 (297)
428 PRK08223 hypothetical protein; 41.5 57 0.0012 32.8 5.7 78 97-187 68-149 (287)
429 cd04113 Rab4 Rab4 subfamily. 41.2 18 0.0004 30.6 1.9 26 248-273 2-27 (161)
430 cd04160 Arfrp1 Arfrp1 subfamil 41.1 17 0.00036 30.9 1.7 20 249-268 2-21 (167)
431 PF01248 Ribosomal_L7Ae: Ribos 41.1 65 0.0014 26.0 5.0 43 160-204 35-78 (95)
432 TIGR00630 uvra excinuclease AB 41.0 20 0.00044 41.3 2.8 103 249-371 25-141 (924)
433 cd04158 ARD1 ARD1 subfamily. 40.9 17 0.00036 31.7 1.7 21 249-269 2-22 (169)
434 COG0324 MiaA tRNA delta(2)-iso 40.9 21 0.00046 36.3 2.6 28 249-276 6-34 (308)
435 CHL00181 cbbX CbbX; Provisiona 40.7 15 0.00033 36.1 1.6 20 249-268 62-81 (287)
436 PRK06761 hypothetical protein; 40.7 30 0.00065 34.6 3.6 21 248-268 5-25 (282)
437 PHA00729 NTP-binding motif con 40.7 15 0.00032 35.7 1.4 108 248-369 19-138 (226)
438 PRK10536 hypothetical protein; 40.7 16 0.00035 36.3 1.7 21 248-268 76-96 (262)
439 cd03271 ABC_UvrA_II The excisi 40.5 17 0.00037 35.6 1.8 16 249-264 24-39 (261)
440 COG1126 GlnQ ABC-type polar am 40.4 14 0.0003 36.4 1.2 18 249-266 31-48 (240)
441 TIGR00362 DnaA chromosomal rep 40.4 18 0.00039 36.8 2.0 29 249-277 139-173 (405)
442 cd08172 GlyDH-like1 Glycerol d 40.3 2.5E+02 0.0055 28.1 10.1 86 97-190 23-108 (347)
443 TIGR00262 trpA tryptophan synt 40.2 50 0.0011 32.2 5.0 103 148-253 105-227 (256)
444 cd04101 RabL4 RabL4 (Rab-like4 40.2 18 0.0004 30.6 1.8 22 248-269 2-23 (164)
445 PF08423 Rad51: Rad51; InterP 40.1 13 0.00027 36.1 0.9 64 228-310 26-93 (256)
446 COG1922 WecG Teichoic acid bio 40.0 1.2E+02 0.0026 30.2 7.5 102 95-204 106-208 (253)
447 cd04110 Rab35 Rab35 subfamily. 39.6 19 0.00042 32.5 1.9 25 247-271 7-31 (199)
448 PF07931 CPT: Chloramphenicol 39.6 24 0.00053 32.7 2.6 64 292-371 109-173 (174)
449 PRK14182 bifunctional 5,10-met 39.5 2E+02 0.0044 29.0 9.2 150 95-274 30-185 (282)
450 cd01487 E1_ThiF_like E1_ThiF_l 39.5 94 0.002 28.3 6.4 80 96-188 39-120 (174)
451 PRK14732 coaE dephospho-CoA ki 39.4 22 0.00049 33.0 2.4 31 249-279 2-32 (196)
452 COG1484 DnaC DNA replication p 39.4 20 0.00043 34.8 2.1 35 245-279 104-142 (254)
453 PRK14721 flhF flagellar biosyn 39.3 95 0.0021 32.8 7.2 20 249-268 194-213 (420)
454 PTZ00454 26S protease regulato 39.3 17 0.00038 37.7 1.8 21 249-269 182-202 (398)
455 PTZ00258 GTP-binding protein; 39.3 21 0.00045 37.3 2.3 33 248-280 23-55 (390)
456 cd06317 PBP1_ABC_sugar_binding 39.3 1.3E+02 0.0029 27.3 7.3 53 134-187 32-86 (275)
457 COG1763 MobB Molybdopterin-gua 39.2 23 0.0005 32.7 2.3 31 250-280 6-40 (161)
458 TIGR03453 partition_RepA plasm 39.2 73 0.0016 32.4 6.2 78 190-274 47-137 (387)
459 PRK12726 flagellar biosynthesi 39.0 22 0.00049 37.5 2.5 21 247-267 207-227 (407)
460 cd04161 Arl2l1_Arl13_like Arl2 39.0 1.1E+02 0.0023 26.7 6.5 21 249-269 2-22 (167)
461 PRK00349 uvrA excinuclease ABC 39.0 26 0.00056 40.6 3.2 103 249-371 29-145 (943)
462 PRK14187 bifunctional 5,10-met 38.9 4E+02 0.0087 27.0 11.2 150 95-274 32-188 (294)
463 PRK13306 ulaD 3-keto-L-gulonat 38.8 91 0.002 29.6 6.4 70 113-192 45-117 (216)
464 smart00177 ARF ARF-like small 38.7 21 0.00045 31.5 2.0 22 247-268 14-35 (175)
465 PRK05537 bifunctional sulfate 38.7 1.6E+02 0.0034 32.2 8.9 24 248-271 394-418 (568)
466 cd03112 CobW_like The function 38.6 25 0.00054 31.3 2.4 27 249-275 3-31 (158)
467 cd01981 Pchlide_reductase_B Pc 38.4 4.6E+02 0.01 27.0 12.7 172 144-371 70-259 (430)
468 cd04124 RabL2 RabL2 subfamily. 38.3 22 0.00049 30.5 2.0 23 249-271 3-25 (161)
469 cd01484 E1-2_like Ubiquitin ac 38.2 58 0.0013 31.5 5.1 82 96-188 39-122 (234)
470 PRK06904 replicative DNA helic 38.2 4.1E+02 0.0089 28.3 11.7 109 242-372 216-330 (472)
471 cd01900 YchF YchF subfamily. 38.1 19 0.00042 35.6 1.8 32 249-280 1-32 (274)
472 cd04163 Era Era subfamily. Er 38.1 24 0.00052 29.0 2.1 21 249-269 6-26 (168)
473 cd01867 Rab8_Rab10_Rab13_like 38.0 21 0.00047 30.7 1.9 21 249-269 6-26 (167)
474 cd04135 Tc10 TC10 subfamily. 38.0 23 0.00051 30.3 2.1 24 249-272 3-26 (174)
475 PRK10733 hflB ATP-dependent me 37.9 29 0.00064 38.1 3.3 24 249-272 188-212 (644)
476 TIGR02239 recomb_RAD51 DNA rep 37.8 24 0.00052 35.4 2.4 25 243-267 92-117 (316)
477 PRK06921 hypothetical protein; 37.8 21 0.00046 34.8 2.0 30 249-278 120-154 (266)
478 COG2074 2-phosphoglycerate kin 37.8 1.1E+02 0.0024 31.1 7.0 78 294-375 210-289 (299)
479 cd01895 EngA2 EngA2 subfamily. 37.7 23 0.0005 29.5 2.0 29 249-277 5-34 (174)
480 PRK13975 thymidylate kinase; P 37.7 18 0.0004 32.2 1.5 23 249-271 5-28 (196)
481 COG1136 SalX ABC-type antimicr 37.7 15 0.00033 35.7 1.0 39 335-374 149-188 (226)
482 PRK13600 putative ribosomal pr 37.7 1.5E+02 0.0033 24.7 6.8 53 149-203 20-74 (84)
483 cd06840 PLPDE_III_Bif_AspK_Dap 37.7 85 0.0018 31.8 6.3 205 140-372 15-240 (368)
484 TIGR01287 nifH nitrogenase iro 37.5 23 0.0005 33.7 2.2 28 249-276 3-34 (275)
485 COG2077 Tpx Peroxiredoxin [Pos 37.3 99 0.0021 28.9 6.1 82 116-204 36-121 (158)
486 PF02593 dTMP_synthase: Thymid 37.3 60 0.0013 31.5 4.9 154 102-280 2-177 (217)
487 TIGR02853 spore_dpaA dipicolin 37.2 90 0.002 30.8 6.3 95 148-274 84-178 (287)
488 cd01865 Rab3 Rab3 subfamily. 37.1 23 0.00049 30.5 1.9 25 249-273 4-28 (165)
489 PRK09197 fructose-bisphosphate 37.0 97 0.0021 32.2 6.7 44 143-186 5-49 (350)
490 PF06068 TIP49: TIP49 C-termin 37.0 18 0.00038 38.1 1.4 29 249-280 53-82 (398)
491 PRK08903 DnaA regulatory inact 37.0 21 0.00046 32.9 1.8 21 249-269 45-65 (227)
492 PRK06749 replicative DNA helic 36.9 4.2E+02 0.0092 27.8 11.4 110 241-373 180-295 (428)
493 cd01673 dNK Deoxyribonucleosid 36.8 23 0.00049 31.7 1.9 26 249-274 2-28 (193)
494 PRK06995 flhF flagellar biosyn 36.7 91 0.002 33.6 6.6 20 248-267 258-277 (484)
495 PRK11545 gntK gluconate kinase 36.5 15 0.00032 32.9 0.6 20 252-271 1-21 (163)
496 PLN03046 D-glycerate 3-kinase; 36.5 69 0.0015 34.5 5.6 109 140-278 122-248 (460)
497 PF03215 Rad17: Rad17 cell cyc 36.5 21 0.00046 38.4 2.0 50 223-276 25-76 (519)
498 COG1419 FlhF Flagellar GTP-bin 36.5 65 0.0014 34.1 5.4 97 246-368 203-308 (407)
499 PLN02422 dephospho-CoA kinase 36.4 26 0.00056 34.0 2.4 31 249-279 4-34 (232)
500 PRK04195 replication factor C 36.4 24 0.00053 37.0 2.3 28 249-276 42-70 (482)
No 1
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=100.00 E-value=4.3e-106 Score=774.09 Aligned_cols=265 Identities=45% Similarity=0.753 Sum_probs=257.3
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l 174 (387)
++.++||+||||||+|||++++|+|+|||++ ++++++||||+|.+++.++++++++++++|||||||++||++|
T Consensus 2 ~~~~~i~~VSDstGeTAe~v~~A~l~QF~~~------~~~~~~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv~~elr~~l 75 (269)
T PRK05339 2 MMKRHVFLVSDSTGETAETVGRAALSQFPNV------EFEEHRYPFVRTEEKADEVLEEINAERPIVFYTLVDPELREIL 75 (269)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHHhCCCC------CeeEEEeCCcCCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHH
Confidence 5678999999999999999999999999974 6889999999999999999999988899999999999999999
Q ss_pred HHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEcc
Q 016579 175 KKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGV 254 (387)
Q Consensus 175 ~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGV 254 (387)
+++|+.+||+++|+|+|+++.|+++||++|.+ .||+.|++|++||+|||||||||+||||+++++|++||||||||
T Consensus 76 ~~~~~~~~i~~vdll~p~i~~le~~lg~~p~~----~pG~~~~ld~~Yf~RIeAiefal~hDDG~~~~~l~~ADIiLvGV 151 (269)
T PRK05339 76 EERCAEFGIPCIDILGPLIAPLEQELGLKPTP----EPGRTHGLDEEYFKRIEAIEFALAHDDGQDPRGLDEADVILVGV 151 (269)
T ss_pred HHHHHHcCCCEEeccHHHHHHHHHHHCcCCCC----CCCcccCCcHHHHHHHHHHHHHHHcCCCCCcCCcccCCEEEECc
Confidence 99999999999999999999999999999986 89999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHH
Q 016579 255 SRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVR 334 (387)
Q Consensus 255 SRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~ 334 (387)
|||||||||||||++|||||||||||+++||++||+++++|||||||||++|++||++|++.||+ |.|||+++|+
T Consensus 152 SRtsKTPlS~YLA~~G~KvAN~PLvpe~~lP~~L~~~~~~kivGLtIdp~rL~~IR~~Rl~~lg~-----s~Ya~~~~i~ 226 (269)
T PRK05339 152 SRTSKTPTSLYLANKGIKAANYPLVPEVPLPEELFPIDPKKIFGLTIDPERLIEIRKERLPNLGL-----SRYASLEQCR 226 (269)
T ss_pred CCCCCcHHHHHHHccCCceEeeCCCCCCCCCHHHHhCCCCcEEEEeCCHHHHHHHHHHHhcccCc-----CcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 6899999999
Q ss_pred HHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhccc
Q 016579 335 EELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 335 ~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r~ 375 (387)
+||+||++||+++ ||||||||+|||||||+.|+++++.+.
T Consensus 227 ~El~~A~~l~~k~-~~pvIdvT~kSIEEtA~~Il~~~~~~~ 266 (269)
T PRK05339 227 EELAEAERLFRRE-GIPVIDVTNKSIEETAAKILEILGLRR 266 (269)
T ss_pred HHHHHHHHHHHHc-CCCEEECCCCcHHHHHHHHHHHHHhhc
Confidence 9999999999997 999999999999999999999997654
No 2
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=100.00 E-value=2.1e-105 Score=764.70 Aligned_cols=255 Identities=52% Similarity=0.835 Sum_probs=249.7
Q ss_pred EEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHH
Q 016579 100 IYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACE 179 (387)
Q Consensus 100 IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~ 179 (387)
||+||||||+||+++++|+|+|||+. ++++++||||+|.+++.++++++++++++|||||||++||++++++|+
T Consensus 1 IyiVSDstGeTAe~v~~A~l~QF~~~------~~~~~~~p~I~~~~~~~~il~~i~~~~~iV~~Tlv~~~lr~~l~~~~~ 74 (255)
T PF03618_consen 1 IYIVSDSTGETAETVARAALAQFPDV------EFEIHRFPFIRTEEQLDEILEEIKEENAIVFYTLVDPELREYLEEFCR 74 (255)
T ss_pred CEEEecCchHHHHHHHHHHHHhCCCC------ceEEEECCCcCCHHHHHHHHHHHhccCCEEEEeCCCHHHHHHHHHHHH
Confidence 79999999999999999999999974 689999999999999999999999988999999999999999999999
Q ss_pred HcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCC
Q 016579 180 LWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGK 259 (387)
Q Consensus 180 ~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsK 259 (387)
++||+++|+|+|+++.|+++||++|.+ .||+.|+||++||+|||||||||+||||+++++|.+|||||||||||||
T Consensus 75 ~~~i~~~Dll~~~l~~l~~~lg~~p~~----~pg~~~~ld~~Yf~RIeAiefav~~DDG~~~~~l~~ADivLvGVSRtsK 150 (255)
T PF03618_consen 75 EHGIPCVDLLGPLLSALEEFLGQKPSR----KPGLQHQLDEDYFKRIEAIEFAVKHDDGKNPRGLDEADIVLVGVSRTSK 150 (255)
T ss_pred hcCCCEEeccHHHHHHHHHHHCcCccc----ccCccccchHHHHHHHHHHHHHHHccCCCCccccccCCEEEEcccccCC
Confidence 999999999999999999999999975 9999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 016579 260 TPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF 339 (387)
Q Consensus 260 TPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~ 339 (387)
|||||||||+|||||||||||+++||++||++|++|||||||||++|++||++|++.||++ .+.||++++|++||+|
T Consensus 151 TPlS~YLA~~G~KvAN~PLvpe~~lP~~L~~~~~~ki~GLtidp~~L~~IR~~Rl~~lg~~---~s~Ya~~~~i~~El~~ 227 (255)
T PF03618_consen 151 TPLSMYLANKGYKVANVPLVPEVPLPEELFEVDPKKIFGLTIDPERLIEIRRERLKSLGLD---DSSYADLERIEEELEY 227 (255)
T ss_pred CchhHHHHhcCcceeecCcCCCCCCCHHHHhCCCCcEEEEECCHHHHHHHHHHHHhccCCC---CCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 6899999999999999
Q ss_pred HHHHhhhCCCCcEEeCCCccHHHHHHHHH
Q 016579 340 AGRIFAQNPVWPVIEVTGKAIEETAAVVL 368 (387)
Q Consensus 340 A~~lf~k~~g~pvIDVT~kSIEEtAa~Il 368 (387)
|+++|+|+ ||||||||+|||||||+.||
T Consensus 228 A~~l~~~~-~~pvIdvT~ksIEEtA~~Il 255 (255)
T PF03618_consen 228 AERLFRKL-GCPVIDVTNKSIEETAAEIL 255 (255)
T ss_pred HHHHHHHc-CCCEEECCCCcHHHHHHHhC
Confidence 99999997 99999999999999999996
No 3
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=9.5e-96 Score=698.98 Aligned_cols=270 Identities=43% Similarity=0.636 Sum_probs=259.2
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Q 016579 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAK 175 (387)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~ 175 (387)
..++||+||||||+|||.++||+|+||++.. +...+|.||++++.+++.+++..++.++++|.||+++++++.++.
T Consensus 2 ~~~~v~~VSDsTGeTae~~~rA~laQF~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~iv~~tiv~~~v~~~l~ 77 (273)
T COG1806 2 TKRHVFYVSDSTGETAELIGRAALAQFPGVK----FKAITHPFPDIRSKAQLVEVLILAAYAPGIVRPTIVDSEVRPELR 77 (273)
T ss_pred CcceEEEEeCChHHHHHHHHHHHHHhcCCCC----CCceeeecccchhHHHHHHHHHHHhhcCCceEEEEehHHhHHHHH
Confidence 4589999999999999999999999999753 346899999999999999999988889999999999999999999
Q ss_pred HHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccC
Q 016579 176 KACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVS 255 (387)
Q Consensus 176 ~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVS 255 (387)
+.|.+.++||+|+|+|+++.|+.++|.+|.. .+|++|.|+++||+|||||||||+||||++|++|++|||||||||
T Consensus 78 ~~~~~~~~~~vdvl~p~i~~le~~lg~~~~~----~~g~~h~l~~~Yf~RIeAi~Fal~hDDG~~~~~l~~ADvILvGVS 153 (273)
T COG1806 78 EICAEAGAPCVDVLGPLIALLESELGLEPTP----EPGRQHSLDDDYFDRIEAINFALAHDDGQSPRNLDEADVILVGVS 153 (273)
T ss_pred HHHHHcCCCeehHHHHHHHHHHHHhCCCCcc----cccccccchHHHHHHHHHHHHHHhccCCCCccccCccCEEEEeec
Confidence 9999999999999999999999999999975 899999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHH
Q 016579 256 RTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVRE 335 (387)
Q Consensus 256 RTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~ 335 (387)
||||||||+|||++|+|||||||||+++.|.+||+..+.+||||||+||||++||++||+++|+. ++|.|||.++|++
T Consensus 154 RtsKTPtS~YLA~q~ikaAN~PlVpe~~~p~~L~~~~~~~i~GLti~peRL~~IR~eRL~~~~~~--~~s~Ya~~~~~~e 231 (273)
T COG1806 154 RTSKTPTSLYLALQGIKAANYPLVPEDPEPDELPAALKPLLFGLTISPERLSAIREERLKSLGLR--ENSRYASLDQCRE 231 (273)
T ss_pred cCCCCchHHHHHHhcchhccCCcCCCCCChhhhhhcccceEEEEecCHHHHHHHHHHHhhccCCC--CccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 4899999999999
Q ss_pred HHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhcccc
Q 016579 336 ELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRKH 376 (387)
Q Consensus 336 EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r~~ 376 (387)
||.||++||+|+ ||||||||+|||||||+.|+.++...+.
T Consensus 232 El~~ae~l~~r~-~~pvidvt~~SIEEtAa~Il~~~~~~r~ 271 (273)
T COG1806 232 ELAYAEALFRRN-GIPVIDVTNKSIEETAAKILALLGLSRR 271 (273)
T ss_pred HHHHHHHHHHHh-CCCEEecccchHHHHHHHHHHHHhcccc
Confidence 999999999997 9999999999999999999999966544
No 4
>PRK13947 shikimate kinase; Provisional
Probab=97.69 E-value=0.00067 Score=59.43 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=72.1
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeeccccC----CCCCCccccc-----------------c--CCCcEEE----Ee
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM----GVELPKSLFQ-----------------V--DPEKVFG----LT 300 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLVp----~v~lP~eLf~-----------------v--~~~KI~G----LT 300 (387)
|+|+|.++||||-++-.|| ..||..-....+- +.+++ ++|+ + ....|++ -.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~-~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~v 82 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVA-EIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGVV 82 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHH-HHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCCc
Confidence 8999999999999999999 5688766555442 12211 1111 1 1123433 23
Q ss_pred cChhHHH---------------HHHHHHHhhcCCCCCCCC-CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHH
Q 016579 301 INPLVLQ---------------SIRKARARSLGFRDEIRS-NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETA 364 (387)
Q Consensus 301 IdPerL~---------------~IR~eRlk~lGl~~~~~S-~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtA 364 (387)
++++.+. +++.+|++.-+-. +.. .-...+++.+-++....+|... --+||+++.++||++
T Consensus 83 l~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~r--p~~~~~~~~~~i~~~~~~r~~~y~~a--d~~Idt~~~~~~~i~ 158 (171)
T PRK13947 83 LNPENVVQLRKNGVVICLKARPEVILRRVGKKKSR--PLLMVGDPEERIKELLKEREPFYDFA--DYTIDTGDMTIDEVA 158 (171)
T ss_pred CCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCC--CCCCCCChHHHHHHHHHHHHHHHHhc--CEEEECCCCCHHHHH
Confidence 5555554 3445666432211 111 1122456665556666777652 368999999999999
Q ss_pred HHHHH-HHhc
Q 016579 365 AVVLR-LYHD 373 (387)
Q Consensus 365 a~Il~-~~~~ 373 (387)
..|.+ ++.+
T Consensus 159 ~~I~~~~~~~ 168 (171)
T PRK13947 159 EEIIKAYLKL 168 (171)
T ss_pred HHHHHHHHhh
Confidence 99999 5543
No 5
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.42 E-value=0.00085 Score=66.93 Aligned_cols=89 Identities=26% Similarity=0.315 Sum_probs=66.1
Q ss_pred CCCCCcccccc-----CCCcEEEEecChhHHHHHH-HHHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHhhhCCCCcEE
Q 016579 281 GVELPKSLFQV-----DPEKVFGLTINPLVLQSIR-KARARSLGFRDEIRSNY-SEMDYVREELEFAGRIFAQNPVWPVI 353 (387)
Q Consensus 281 ~v~lP~eLf~v-----~~~KI~GLTIdPerL~~IR-~eRlk~lGl~~~~~S~Y-A~~e~I~~EL~~A~~lf~k~~g~pvI 353 (387)
|+.+++.+.+. ...-.|-|+|.-+..++=| ..|.+.+. . +...| ...+.|+.+=+|--+-.+++ |||+|
T Consensus 197 Gvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~~--r-~~~~y~~~~~~ir~iq~~l~~~a~~~-~ip~I 272 (301)
T PRK04220 197 GVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVSR--R-PAERYLKNFEIIREINDYIVEKAKKH-GVPVI 272 (301)
T ss_pred cCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhhC--C-chhhHHHHHHHHHHHHHHHHHHHHHh-CCCee
Confidence 66677666542 1123678888777777666 56666662 2 35567 89999999999999999997 99999
Q ss_pred eCCCccHHHHHHHHHHHHhccc
Q 016579 354 EVTGKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 354 DVT~kSIEEtAa~Il~~~~~r~ 375 (387)
|.+ .|++|-+.|++.+.++.
T Consensus 273 ~n~--~i~~s~~~~~~~i~~~~ 292 (301)
T PRK04220 273 ENI--SIEETVDKILEIITERL 292 (301)
T ss_pred cCc--cHHHHHHHHHHHHHHHH
Confidence 776 48899999998887764
No 6
>PRK03839 putative kinase; Provisional
Probab=97.34 E-value=0.0015 Score=58.26 Aligned_cols=117 Identities=22% Similarity=0.363 Sum_probs=71.0
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeecc-ccCCCCCC-------------------------ccccc------cCCCc
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVP-IVMGVELP-------------------------KSLFQ------VDPEK 295 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~P-LVp~v~lP-------------------------~eLf~------v~~~K 295 (387)
|+|+|.++||||-++-.||+ .||...+.= ++....++ .-+.. ..++.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vIidG~~~~l~~~~~ 82 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEEFKEKNVVLDGHLSHLLPVDY 82 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHHhccCCCEEEEeccccccCCCE
Confidence 89999999999999999995 588775521 01000000 00111 13456
Q ss_pred EEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH---HHHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016579 296 VFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA---GRIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 372 (387)
Q Consensus 296 I~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A---~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~ 372 (387)
+|-|+.+++.+.+ |++.-+... .. ..+.+.+++... +.+..+. .+-+||++++++||++..|++.+.
T Consensus 83 vi~L~~~~~~~~~----Rl~~R~~~~---~~--~~~~~~~~~~~~~~~~~~~~r~-~~~~Id~~~~s~eev~~~I~~~l~ 152 (180)
T PRK03839 83 VIVLRAHPKIIKE----RLKERGYSK---KK--ILENVEAELVDVCLCEALEEKE-KVIEVDTTGKTPEEVVEEILELIK 152 (180)
T ss_pred EEEEECCHHHHHH----HHHHcCCCH---HH--HHHHHHHHHHHHHHHHHHHhcC-CEEEEECCCCCHHHHHHHHHHHHh
Confidence 7889999988754 443222210 00 123344444321 2233343 577999999999999999999997
Q ss_pred ccc
Q 016579 373 DRK 375 (387)
Q Consensus 373 ~r~ 375 (387)
...
T Consensus 153 ~~~ 155 (180)
T PRK03839 153 SGK 155 (180)
T ss_pred cCC
Confidence 643
No 7
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0023 Score=59.80 Aligned_cols=112 Identities=26% Similarity=0.383 Sum_probs=80.4
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec-------cccCCCC----------------CCc--------------ccccc
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANV-------PIVMGVE----------------LPK--------------SLFQV 291 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~-------PLVp~v~----------------lP~--------------eLf~v 291 (387)
|++-|-.+||||-.|=-|+-.||++..+ +++-+.+ +.+ .|+.
T Consensus 3 I~ITGTPGvGKTT~~~~L~~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~hl~~- 81 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLRELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLSHLLP- 81 (180)
T ss_pred EEEeCCCCCchHHHHHHHHHhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeechhhhcCC-
Confidence 7889999999999999999999999864 3433221 111 1222
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHH-----HHHHHHhhhCCCCcEEeCCCccHHHHHHH
Q 016579 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREEL-----EFAGRIFAQNPVWPVIEVTGKAIEETAAV 366 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL-----~~A~~lf~k~~g~pvIDVT~kSIEEtAa~ 366 (387)
+..-+|=|..+|+.|- +||+.-|-+.. -=.|++..|+ ..|.+-|.. .-.||+|++|.||++..
T Consensus 82 ~~dlVvVLR~~p~~L~----~RLk~RGy~~e-----KI~ENveAEi~~vi~~EA~E~~~~---v~evdtt~~s~ee~~~~ 149 (180)
T COG1936 82 DCDLVVVLRADPEVLY----ERLKGRGYSEE-----KILENVEAEILDVILIEAVERFEA---VIEVDTTNRSPEEVAEE 149 (180)
T ss_pred CCCEEEEEcCCHHHHH----HHHHHcCCCHH-----HHHHHHHHHHHHHHHHHHHHhcCc---eEEEECCCCCHHHHHHH
Confidence 4678999999999995 58876665321 1123444453 456666643 56899999999999999
Q ss_pred HHHHHhc
Q 016579 367 VLRLYHD 373 (387)
Q Consensus 367 Il~~~~~ 373 (387)
|+++++.
T Consensus 150 i~~ii~~ 156 (180)
T COG1936 150 IIDIIGG 156 (180)
T ss_pred HHHHHcc
Confidence 9999984
No 8
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.94 E-value=0.0075 Score=53.06 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=69.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecccc---------------------------------------C---CCCCC
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIV---------------------------------------M---GVELP 285 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLV---------------------------------------p---~v~lP 285 (387)
|+|+|.++||||-++-.|| ..|+..-+.=.+ - ++-+.
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~vi~~ggg~vl~ 84 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAPSTVIATGGGIILT 84 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCCCeEEECCCCccCC
Confidence 8899999999999999999 468754441110 0 11111
Q ss_pred ccccc--cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHH
Q 016579 286 KSLFQ--VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEET 363 (387)
Q Consensus 286 ~eLf~--v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEt 363 (387)
....+ .+...+|-|+.+++.+.+-=..|-...+-+.-.+..+ .+.+++-++.-...|++. .+-+||.+ +++||+
T Consensus 85 ~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~--~~~~~~~~~~r~~~y~~~-a~~~Id~~-~~~e~v 160 (171)
T PRK03731 85 EENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPI--SEEVAEVLAEREALYREV-AHHIIDAT-QPPSQV 160 (171)
T ss_pred HHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCCh--HHHHHHHHHHHHHHHHHh-CCEEEcCC-CCHHHH
Confidence 11000 1345688899998876541111211000000001111 244444445555678774 67899966 899999
Q ss_pred HHHHHHHHh
Q 016579 364 AAVVLRLYH 372 (387)
Q Consensus 364 Aa~Il~~~~ 372 (387)
++.|++.+.
T Consensus 161 ~~~i~~~l~ 169 (171)
T PRK03731 161 VSEILSALA 169 (171)
T ss_pred HHHHHHHHh
Confidence 999999874
No 9
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.88 E-value=0.012 Score=53.11 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=67.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecc-----------------------------------------ccCCCCC--
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVP-----------------------------------------IVMGVEL-- 284 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~P-----------------------------------------LVp~v~l-- 284 (387)
|+|+|.+++|||-++-.|| ..|+..-+.= +.-+...
T Consensus 7 I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~ggg~v~ 86 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGGGSVK 86 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCchhC
Confidence 8999999999999999999 4566542221 0001111
Q ss_pred -Cc--cccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC--HHHHHHHHHHH-HHHhhhCCCCcEEeCCCc
Q 016579 285 -PK--SLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE--MDYVREELEFA-GRIFAQNPVWPVIEVTGK 358 (387)
Q Consensus 285 -P~--eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~--~e~I~~EL~~A-~~lf~k~~g~pvIDVT~k 358 (387)
|+ .++. ..+.+|-|+.+++.+.+ |++..+. ...+.+ .+...++|-.. +.+|++. -.-+||++++
T Consensus 87 ~~~~~~~l~-~~~~vv~L~~~~e~~~~----Ri~~~~~----rP~~~~~~~~~~~~~l~~~R~~~Y~~~-Ad~~idt~~~ 156 (172)
T PRK05057 87 SRETRNRLS-ARGVVVYLETTIEKQLA----RTQRDKK----RPLLQVDDPREVLEALANERNPLYEEI-ADVTIRTDDQ 156 (172)
T ss_pred CHHHHHHHH-hCCEEEEEeCCHHHHHH----HHhCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHhh-CCEEEECCCC
Confidence 11 1111 23456777777776544 4432221 111221 12223344333 4456674 5678999999
Q ss_pred cHHHHHHHHHHHHhc
Q 016579 359 AIEETAAVVLRLYHD 373 (387)
Q Consensus 359 SIEEtAa~Il~~~~~ 373 (387)
++||++..|++.+.+
T Consensus 157 s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 157 SAKVVANQIIHMLES 171 (172)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998865
No 10
>PRK04040 adenylate kinase; Provisional
Probab=96.62 E-value=0.014 Score=53.72 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=76.7
Q ss_pred EEEEccCCCCCChhhHHhhhc---Cceeeecccc----------------------------------------------
Q 016579 249 IILSGVSRTGKTPLSIYLAQK---GYKVANVPIV---------------------------------------------- 279 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~---GyKVAN~PLV---------------------------------------------- 279 (387)
|+|.|+++||||=++--|+++ |+++.|+==+
T Consensus 5 i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~~~~ 84 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEGPVI 84 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCCCEE
Confidence 789999999999999999854 7877654221
Q ss_pred CC------------CCCCcccc-ccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---
Q 016579 280 MG------------VELPKSLF-QVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRI--- 343 (387)
Q Consensus 280 p~------------v~lP~eLf-~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~l--- 343 (387)
-+ ..+|.++| +..+..+|-|..+|+.+.+ .|++. . ..+..|.+.+.+++.++.++..
T Consensus 85 ~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~---Rrl~d-~---~R~R~~es~e~I~~~~~~a~~~a~~ 157 (188)
T PRK04040 85 VDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILM---RRLRD-E---TRRRDVETEEDIEEHQEMNRAAAMA 157 (188)
T ss_pred EeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHH---HHhcc-c---ccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00 01343333 2345568999999995444 44422 0 0134678888888888777774
Q ss_pred hhhCCCCcEEeCCCcc--HHHHHHHHHHHH
Q 016579 344 FAQNPVWPVIEVTGKA--IEETAAVVLRLY 371 (387)
Q Consensus 344 f~k~~g~pvIDVT~kS--IEEtAa~Il~~~ 371 (387)
|..+.|||+.=+.|.- .|+++..|++++
T Consensus 158 ~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 158 YAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 3333467755555555 999999999876
No 11
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.60 E-value=0.0079 Score=59.44 Aligned_cols=118 Identities=20% Similarity=0.185 Sum_probs=65.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee-ecccc--CCC--------CCCc--------------ccc-------cc-CCCc
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVA-NVPIV--MGV--------ELPK--------------SLF-------QV-DPEK 295 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA-N~PLV--p~v--------~lP~--------------eLf-------~v-~~~K 295 (387)
|+|.|.|+||||-++--|++.||.+. |+|+- +.. ..+. .+. +. ..-.
T Consensus 9 i~i~G~~GsGKtt~~~~l~~~g~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~ 88 (288)
T PRK05416 9 VIVTGLSGAGKSVALRALEDLGYYCVDNLPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRERGIDVR 88 (288)
T ss_pred EEEECCCCCcHHHHHHHHHHcCCeEECCcCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHcCCcEE
Confidence 88999999999999999998896554 44321 100 0000 000 00 0013
Q ss_pred EEEEecChhHHHHHHHHHHhhcCCCCCCCC-CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016579 296 VFGLTINPLVLQSIRKARARSLGFRDEIRS-NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 296 I~GLTIdPerL~~IR~eRlk~lGl~~~~~S-~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
+|-|+.+++.|.+ |++.-.-.. |-. .-...+.+++|-+.-+.+++. ---+||+++++++|++..|++.+..
T Consensus 89 iI~L~a~~e~L~~----Rl~~~rr~R-PLl~~~~l~e~I~~eR~~l~pl~~~--ADivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 89 VLFLDASDEVLIR----RYSETRRRH-PLSGDGSLLEGIELERELLAPLRER--ADLVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred EEEEECCHHHHHH----HHhhcccCC-CccCCccHHHHHHHHHhhhhhHHHh--CCEEEECCCCCHHHHHHHHHHHHhc
Confidence 4555555555543 221100000 100 112233355554443334443 2478999999999999999998865
No 12
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.55 E-value=0.031 Score=51.67 Aligned_cols=135 Identities=15% Similarity=0.191 Sum_probs=73.6
Q ss_pred CCCCCCcCc----EEEEccCCCCCChhhHHhhhcCcee------------------eeccccCC---------C------
Q 016579 240 LPQNLQKAD----IILSGVSRTGKTPLSIYLAQKGYKV------------------ANVPIVMG---------V------ 282 (387)
Q Consensus 240 ~~~~L~~AD----IVLvGVSRTsKTPlSmYLA~~GyKV------------------AN~PLVp~---------v------ 282 (387)
+|+.+.+++ |||+|+|++|||-+.-.|+++|+++ -+|.+|.. .
T Consensus 3 ~~~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~ 82 (206)
T PRK14738 3 NPWLFNKPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWA 82 (206)
T ss_pred CccccCCCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEE
Confidence 444454444 7899999999999999999887654 23443320 0
Q ss_pred -------CCCc-ccc-ccCCCcEEEEecChhHHHHHHHHHHhhc---CCCCC---------CCCCCCCHHHHHHHHHHHH
Q 016579 283 -------ELPK-SLF-QVDPEKVFGLTINPLVLQSIRKARARSL---GFRDE---------IRSNYSEMDYVREELEFAG 341 (387)
Q Consensus 283 -------~lP~-eLf-~v~~~KI~GLTIdPerL~~IR~eRlk~l---Gl~~~---------~~S~YA~~e~I~~EL~~A~ 341 (387)
..|. .+- ....++++=|+++++-+..+|+.-.... -.+.+ .... -+.+.+.+-+..++
T Consensus 83 ~~~g~~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~-~~~~~~~~Rl~~~~ 161 (206)
T PRK14738 83 EVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRT-ESPEELERRLATAP 161 (206)
T ss_pred EEcCceecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 0010 010 1123566667777776666653211000 00000 0000 12345555555554
Q ss_pred HHhhh-C-CCCcEEeCCCccHHHHHHHHHHHHhcccc
Q 016579 342 RIFAQ-N-PVWPVIEVTGKAIEETAAVVLRLYHDRKH 376 (387)
Q Consensus 342 ~lf~k-~-~g~pvIDVT~kSIEEtAa~Il~~~~~r~~ 376 (387)
.-+.. . ..+-+||.+ .++||+.+.|++++...+.
T Consensus 162 ~e~~~~~~~~~~iId~~-~~~e~v~~~i~~~l~~~~~ 197 (206)
T PRK14738 162 LELEQLPEFDYVVVNPE-DRLDEAVAQIMAIISAEKS 197 (206)
T ss_pred HHHhcccCCCEEEECCC-CCHHHHHHHHHHHHHHHhc
Confidence 43322 1 245667765 5899999999999987643
No 13
>PRK04182 cytidylate kinase; Provisional
Probab=96.49 E-value=0.021 Score=49.78 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=24.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN 275 (387)
|+|.|.++||||-++-.|| ..||.+-+
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7899999999999999999 57987665
No 14
>PRK13808 adenylate kinase; Provisional
Probab=96.38 E-value=0.025 Score=57.27 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=76.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec-------------------------cccCC---------------------
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV-------------------------PIVMG--------------------- 281 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~-------------------------PLVp~--------------------- 281 (387)
|||+|.+++|||-+|-.|| .+|+..-++ .+||+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~I 82 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGFI 82 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCEE
Confidence 8999999999999999999 678877774 23331
Q ss_pred -CCCCccc------------cccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CHHHHHHHHH-------H
Q 016579 282 -VELPKSL------------FQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EMDYVREELE-------F 339 (387)
Q Consensus 282 -v~lP~eL------------f~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA--~~e~I~~EL~-------~ 339 (387)
-.+|..+ +.+.+..+|-|+++++.|.+--..|+..|.... ...+. +.+.++.=|. .
T Consensus 83 LDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg--~~~R~DD~~E~i~kRL~~Y~~~t~P 160 (333)
T PRK13808 83 LDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARG--EEVRADDTPEVLAKRLASYRAQTEP 160 (333)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccC--CccCCCCCHHHHHHHHHHHHHHhHH
Confidence 0123221 113577899999999998875455543222110 01111 2333332222 1
Q ss_pred HHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhcc
Q 016579 340 AGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 340 A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
..+.|...-.|.+||- ..+|||+...|.++|...
T Consensus 161 Ll~~Y~e~~~lv~IDa-~~siEEV~eeI~~~L~~~ 194 (333)
T PRK13808 161 LVHYYSEKRKLLTVDG-MMTIDEVTREIGRVLAAV 194 (333)
T ss_pred HHHHhhccCcEEEEEC-CCCHHHHHHHHHHHHHHH
Confidence 2334554314678885 589999999999999754
No 15
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.36 E-value=0.029 Score=59.76 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=54.7
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH---------HHhhhCCCCcEEeCCCccHHHHH
Q 016579 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG---------RIFAQNPVWPVIEVTGKAIEETA 364 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~---------~lf~k~~g~pvIDVT~kSIEEtA 364 (387)
..-|=|+.+++.+.+-|..+++.-|+. + .+.+.+++++..=. -+++.. ..-+||+|++++||++
T Consensus 422 dlKIfL~As~evRa~RR~~~l~~Rpll---~---~~~e~i~~~i~eRd~~D~~R~i~PLy~a~-dai~IDTs~lsieeVv 494 (512)
T PRK13477 422 ELKIFLTASVEERARRRALDLQAQGFP---V---IDLEQLEAQIAERDRLDSTREIAPLRKAD-DAIELITDGLSIEEVV 494 (512)
T ss_pred CEEEEEECCHHHHHHHHHhhhhhCCCc---c---CCHHHHHHHHHHHHhhhcccccccccccC-CeEEEECCCCCHHHHH
Confidence 445679999999999777777666652 1 33578888775443 345443 5679999999999999
Q ss_pred HHHHHHHhc
Q 016579 365 AVVLRLYHD 373 (387)
Q Consensus 365 a~Il~~~~~ 373 (387)
..|++.+.+
T Consensus 495 ~~Il~~i~~ 503 (512)
T PRK13477 495 DKIIDLYRD 503 (512)
T ss_pred HHHHHHHHH
Confidence 999999965
No 16
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.31 E-value=0.028 Score=48.69 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN 275 (387)
|+|.|.++||||-++-.||+ .|+.+-|
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 78999999999999999994 6887665
No 17
>PRK13949 shikimate kinase; Provisional
Probab=96.16 E-value=0.038 Score=49.83 Aligned_cols=115 Identities=23% Similarity=0.295 Sum_probs=70.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecccc-----------------------------------------CCCCCC-
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIV-----------------------------------------MGVELP- 285 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLV-----------------------------------------p~v~lP- 285 (387)
|+|+|..++|||=++-.|| ..|+.+-..-.+ .+...|
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg~~~ 83 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGAPC 83 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 8999999999999999999 557654333311 111111
Q ss_pred ----ccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCC-CCCCC-CC-HHHHHHHHHHHHHHhhhCCCCcEEeCCCc
Q 016579 286 ----KSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDE-IRSNY-SE-MDYVREELEFAGRIFAQNPVWPVIEVTGK 358 (387)
Q Consensus 286 ----~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~-~~S~Y-A~-~e~I~~EL~~A~~lf~k~~g~pvIDVT~k 358 (387)
.+++. ..+.+|=|+.+++.+.+ |++..+-..+ ....+ .+ .+.+++-.+.=..+|++. .-+||++++
T Consensus 84 ~~~~~~~l~-~~~~vi~L~~~~~~~~~----Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~a--d~~id~~~~ 156 (169)
T PRK13949 84 FFDNMELMN-ASGTTVYLKVSPEVLFV----RLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQA--KIIFNADKL 156 (169)
T ss_pred CHHHHHHHH-hCCeEEEEECCHHHHHH----HHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhC--CEEEECCCC
Confidence 11211 23567888888887644 4432221110 00111 11 234555666666788873 478999999
Q ss_pred cHHHHHHHHHHH
Q 016579 359 AIEETAAVVLRL 370 (387)
Q Consensus 359 SIEEtAa~Il~~ 370 (387)
+.||++..|++.
T Consensus 157 ~~~e~~~~I~~~ 168 (169)
T PRK13949 157 EDESQIEQLVQR 168 (169)
T ss_pred CHHHHHHHHHHh
Confidence 999999999874
No 18
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.07 E-value=0.063 Score=46.37 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=24.2
Q ss_pred HHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016579 342 RIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 342 ~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
..|.+. ---+||+++.++||+++.|++.+..
T Consensus 141 ~~~~~~-~dl~idt~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 141 PLYEEV-ADITVETDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred HHHHhh-cCeEEeCCCCCHHHHHHHHHHHHHh
Confidence 345553 2358999999999999999998853
No 19
>PRK13946 shikimate kinase; Provisional
Probab=95.91 E-value=0.068 Score=48.36 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=28.7
Q ss_pred HHHHHHHHH-HhhhCCCCcEEeCCCccHHHHHHHHHHHHhcccc
Q 016579 334 REELEFAGR-IFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRKH 376 (387)
Q Consensus 334 ~~EL~~A~~-lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r~~ 376 (387)
.+++...+. +|+. .. -+||+++.++||++..|++.+.....
T Consensus 138 i~~~~~~R~~~y~~-~d-l~i~~~~~~~~~~~~~i~~~i~~~~~ 179 (184)
T PRK13946 138 LARLMEERYPVYAE-AD-LTVASRDVPKEVMADEVIEALAAYLE 179 (184)
T ss_pred HHHHHHHHHHHHHh-CC-EEEECCCCCHHHHHHHHHHHHHHhhc
Confidence 334433333 4544 34 47899999999999999999977543
No 20
>PRK02496 adk adenylate kinase; Provisional
Probab=95.84 E-value=0.078 Score=47.40 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=68.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec------------c-------------ccCC----------C----------
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV------------P-------------IVMG----------V---------- 282 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~------------P-------------LVp~----------v---------- 282 (387)
|+++|.+++|||-++-+|| .+|+...+. | ++|+ +
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g~v 83 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANGWI 83 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCCEE
Confidence 8999999999999999999 467765542 1 1110 0
Q ss_pred --CCCcc------c------cccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH-------HH
Q 016579 283 --ELPKS------L------FQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF-------AG 341 (387)
Q Consensus 283 --~lP~e------L------f~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~-------A~ 341 (387)
..|.. | +...+..+|-|.++++.+.+ |+..-|-. .+ ..+.+++=++. ..
T Consensus 84 ldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~----Rl~~R~~~-----dd-~~~~~~~r~~~y~~~~~~v~ 153 (184)
T PRK02496 84 LDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVE----RLLARGRK-----DD-TEEVIRRRLEVYREQTAPLI 153 (184)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHH----HHhcCCCC-----CC-CHHHHHHHHHHHHHHHHHHH
Confidence 02321 1 11245678888888887653 44333321 11 33434333333 33
Q ss_pred HHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016579 342 RIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 372 (387)
Q Consensus 342 ~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~ 372 (387)
+.|+....|..||-+. ++||+...|.+.+.
T Consensus 154 ~~~~~~~~~~~Ida~~-~~~~V~~~i~~~l~ 183 (184)
T PRK02496 154 DYYRDRQKLLTIDGNQ-SVEAVTTELKAALA 183 (184)
T ss_pred HHHHhcCCEEEEECCC-CHHHHHHHHHHHhC
Confidence 3676543578899554 89999999998763
No 21
>PRK14532 adenylate kinase; Provisional
Probab=95.81 E-value=0.055 Score=48.43 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
|+|+|.++||||-+|--|| .+|+..-..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 8999999999999999999 668877654
No 22
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.76 E-value=0.029 Score=50.03 Aligned_cols=22 Identities=18% Similarity=-0.012 Sum_probs=20.3
Q ss_pred CcEEeCCCccHHHHHHHHHHHH
Q 016579 350 WPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 350 ~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
+-+||++..++||+|+.|++.+
T Consensus 153 dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 153 DLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred eEEEECCCCCHHHHHHHHHHhc
Confidence 6799999999999999999875
No 23
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.57 E-value=0.17 Score=44.74 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=69.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeecc-cc-------------------CCCCCCccc-------------------
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVP-IV-------------------MGVELPKSL------------------- 288 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~P-LV-------------------p~v~lP~eL------------------- 288 (387)
|+|+|.++||||-+|-.|| ..|+..-+.- ++ .+...|.++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~vl 81 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFLI 81 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEEE
Confidence 7899999999999999999 5687666541 11 011122111
Q ss_pred ----------------cc--cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-------HHH
Q 016579 289 ----------------FQ--VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-------GRI 343 (387)
Q Consensus 289 ----------------f~--v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A-------~~l 343 (387)
+. ..+..+|-|+++++.+.+ |+..-+... +-...+.+.+++-++.- .+.
T Consensus 82 Dg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~----Rl~~R~~~~--~r~dd~~e~~~~r~~~y~~~~~~i~~~ 155 (183)
T TIGR01359 82 DGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIK----RLLKRGQSS--GRVDDNIESIKKRFRTYNEQTLPVIEH 155 (183)
T ss_pred eCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHH----HHhcCCccC--CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 234568888998877644 332222210 11123455655544422 233
Q ss_pred hhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016579 344 FAQNPVWPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 344 f~k~~g~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
|++...|-+||.+ .++||+...|++.+
T Consensus 156 ~~~~~~~~~Id~~-~~~~~v~~~i~~~l 182 (183)
T TIGR01359 156 YENKGKVKEINAE-GSVEEVFEDVEKIF 182 (183)
T ss_pred HHhCCCEEEEECC-CCHHHHHHHHHHHh
Confidence 5543247899987 89999999999876
No 24
>PLN02200 adenylate kinase family protein
Probab=95.30 E-value=0.2 Score=47.72 Aligned_cols=116 Identities=13% Similarity=0.180 Sum_probs=70.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec-cccC-------------------CCCCCcc--------------------
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV-PIVM-------------------GVELPKS-------------------- 287 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~-PLVp-------------------~v~lP~e-------------------- 287 (387)
|+|+|.++||||=+|-.|| .+|+..-+. -|+- +...|.+
T Consensus 46 i~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~~~~~IL 125 (234)
T PLN02200 46 TFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSDNNKFLI 125 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCeEEe
Confidence 6889999999999999999 568765443 1210 1112221
Q ss_pred ---------------ccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC-CHHHHHHH-------HHHHHHHh
Q 016579 288 ---------------LFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS-EMDYVREE-------LEFAGRIF 344 (387)
Q Consensus 288 ---------------Lf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA-~~e~I~~E-------L~~A~~lf 344 (387)
++...+..+|-|+++++.+.+ |+..-+.. .+. +.+.+++= .+...+.|
T Consensus 126 DG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~----Rl~~R~~~-----r~dd~~e~~~~Rl~~y~~~~~pv~~~y 196 (234)
T PLN02200 126 DGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVK----RVLNRNQG-----RVDDNIDTIKKRLKVFNALNLPVIDYY 196 (234)
T ss_pred cCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHH----HHHcCcCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345678999999987655 33222211 111 23333322 33334556
Q ss_pred hhCCCCcEEeCCCccHHHHHHHHHHHHhcc
Q 016579 345 AQNPVWPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 345 ~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
++.-.|-+||.+. ++||+...|.+.+...
T Consensus 197 ~~~~~~~~IDa~~-~~eeV~~~v~~~l~~~ 225 (234)
T PLN02200 197 SKKGKLYTINAVG-TVDEIFEQVRPIFAAC 225 (234)
T ss_pred HhcCCEEEEECCC-CHHHHHHHHHHHHHHc
Confidence 6532478999775 9999999999988653
No 25
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.10 E-value=0.15 Score=50.40 Aligned_cols=124 Identities=23% Similarity=0.317 Sum_probs=67.3
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeeccccC----CCCCCc-------------------cccccCCCcEEEEecC-
Q 016579 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM----GVELPK-------------------SLFQVDPEKVFGLTIN- 302 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLVp----~v~lP~-------------------eLf~v~~~KI~GLTId- 302 (387)
-|+|+|.++||||-++-.|| ..|+.+-..=..- +..+++ .+..-...-|++.-..
T Consensus 135 ~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~Ggg~ 214 (309)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATGGGI 214 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECCCch
Confidence 48999999999999999999 5677433111000 111111 0001012234443222
Q ss_pred ---hh---HH------------HHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHH
Q 016579 303 ---PL---VL------------QSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETA 364 (387)
Q Consensus 303 ---Pe---rL------------~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtA 364 (387)
+. .| .+.|.+|+..-+-..+-.+.-+..+.+++-.+.-..+|++. . -+||++.+++||++
T Consensus 215 v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~a-d-~~I~t~~~s~ee~~ 292 (309)
T PRK08154 215 VSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARA-D-AVVDTSGLTVAQSL 292 (309)
T ss_pred hCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC-C-EEEECCCCCHHHHH
Confidence 11 11 13455676432211000111233455655445555566553 3 48999999999999
Q ss_pred HHHHHHHhc
Q 016579 365 AVVLRLYHD 373 (387)
Q Consensus 365 a~Il~~~~~ 373 (387)
..|++.+..
T Consensus 293 ~~I~~~l~~ 301 (309)
T PRK08154 293 ARLRELVRP 301 (309)
T ss_pred HHHHHHHHH
Confidence 999999854
No 26
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.09 E-value=0.11 Score=48.43 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=46.4
Q ss_pred EEEEec-ChhHHHHHHHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016579 296 VFGLTI-NPLVLQSIRKARARSLGFRDEIRSNYS-EMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 372 (387)
Q Consensus 296 I~GLTI-dPerL~~IR~eRlk~lGl~~~~~S~YA-~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~ 372 (387)
+|=|.+ +++.+.+-+..|-...+... +...|. ..+.|+.==+|--+--+++ |+|+||- -.++||-..+++.+.
T Consensus 122 ~i~l~v~d~e~lr~Rl~~R~~~~~~~~-p~~~~~~~~~~ir~i~~~l~~~a~~~-~i~~i~~--~~~~~~~~~~~~~~~ 196 (197)
T PRK12339 122 AFYLYIRDAELHRSRLADRINYTHKNS-PGKRLAEHLPEYRTIMDYSIADARGY-NIKVIDT--DNYREARNPLLDPIS 196 (197)
T ss_pred EEEEEeCCHHHHHHHHHHHhhcccCCC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCCeecC--ccHHHHHHHHHHHhc
Confidence 344555 45556566666665454433 345676 4555554445555566776 9999965 568999999988763
No 27
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.07 E-value=0.14 Score=45.12 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=68.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec--------c-----------------ccC------------------C---
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV--------P-----------------IVM------------------G--- 281 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~--------P-----------------LVp------------------~--- 281 (387)
|+++|+++||||-++--|| ..|+...+. + ++| +
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSKGF 85 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCCeE
Confidence 6789999999999999888 557765543 0 111 0
Q ss_pred --CCCCccc-----cc---cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH-------HHHh
Q 016579 282 --VELPKSL-----FQ---VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFA-------GRIF 344 (387)
Q Consensus 282 --v~lP~eL-----f~---v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A-------~~lf 344 (387)
-..|..+ |+ ..+..+|-|+++++.+.+-...| +.. .+....+.+.+++-+... .+.|
T Consensus 86 i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R----~~~--~~r~d~~~~~~~~r~~~~~~~~~~~~~~y 159 (188)
T TIGR01360 86 LIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKR----AET--SGRVDDNEKTIKKRLETYYKATEPVIAYY 159 (188)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcc----ccc--CCCCCCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 0123221 10 23456888999988776633333 211 011223444554444422 2335
Q ss_pred hhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016579 345 AQNPVWPVIEVTGKAIEETAAVVLRLYH 372 (387)
Q Consensus 345 ~k~~g~pvIDVT~kSIEEtAa~Il~~~~ 372 (387)
+..-.+-+||. ..++||+...|++.+.
T Consensus 160 ~~~~~~~~id~-~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 160 ETKGKLRKINA-EGTVDDVFLQVCTAID 186 (188)
T ss_pred HhCCCEEEEEC-CCCHHHHHHHHHHHHh
Confidence 54313557776 5999999999998875
No 28
>PRK13948 shikimate kinase; Provisional
Probab=94.90 E-value=0.29 Score=45.27 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=69.4
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCceeeeccccC----CCCCC------------------------------------
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM----GVELP------------------------------------ 285 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLVp----~v~lP------------------------------------ 285 (387)
+=|+|+|.++||||=+.-.||+ .|+..--.=.+- +..+|
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~GgG~ 90 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISLGGGT 90 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEECCCcE
Confidence 5699999999999999999994 565432110000 11111
Q ss_pred -------ccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC---CHHHHHHHHHHHHHHhhhCCCCcEEeC
Q 016579 286 -------KSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS---EMDYVREELEFAGRIFAQNPVWPVIEV 355 (387)
Q Consensus 286 -------~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA---~~e~I~~EL~~A~~lf~k~~g~pvIDV 355 (387)
..| . +.+.+|-|+.+++.|.+ |++.=+ ...+. ..+++.+=++.=+.+|++ ..-+||+
T Consensus 91 v~~~~n~~~l-~-~~g~vV~L~~~~e~l~~----Rl~~~~-----RPll~~~~~~~~l~~l~~~R~~~Y~~--a~~~i~t 157 (182)
T PRK13948 91 FMHEENRRKL-L-SRGPVVVLWASPETIYE----RTRPGD-----RPLLQVEDPLGRIRTLLNEREPVYRQ--ATIHVST 157 (182)
T ss_pred EcCHHHHHHH-H-cCCeEEEEECCHHHHHH----HhcCCC-----CCCCCCCChHHHHHHHHHHHHHHHHh--CCEEEEC
Confidence 011 1 12457778888887765 442111 11121 234554333444556755 4679999
Q ss_pred CCccHHHHHHHHHHHHhc
Q 016579 356 TGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 356 T~kSIEEtAa~Il~~~~~ 373 (387)
.+++++|++..|++.+..
T Consensus 158 ~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 158 DGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999999865
No 29
>PRK06762 hypothetical protein; Provisional
Probab=94.53 E-value=0.14 Score=44.72 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=21.3
Q ss_pred cEEeCCCccHHHHHHHHHHHHhcc
Q 016579 351 PVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 351 pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
.+|++++.+++|+++.|+..+.-|
T Consensus 142 ~~~~~~~~~~~~v~~~i~~~~~~~ 165 (166)
T PRK06762 142 ETIFTDNLSLKDIFDAILTDIGLR 165 (166)
T ss_pred eEEecCCCCHHHHHHHHHHHhccC
Confidence 489999999999999999988654
No 30
>PLN02199 shikimate kinase
Probab=94.49 E-value=0.65 Score=46.88 Aligned_cols=148 Identities=15% Similarity=0.218 Sum_probs=91.7
Q ss_pred CCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh-cCceeeecccc----------
Q 016579 211 APGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ-KGYKVANVPIV---------- 279 (387)
Q Consensus 211 ~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLV---------- 279 (387)
..|..+..|++- +.++-+.++-+++. .-|+|+|..+||||=+.-+||+ .||.+...--+
T Consensus 77 e~~~~~~~de~~---Lk~~a~~i~~~l~~-------~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI 146 (303)
T PLN02199 77 ETGSVYPFDEDI---LKRKAEEVKPYLNG-------RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSV 146 (303)
T ss_pred ccCCCCCCCHHH---HHHHHHHHHHHcCC-------CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCH
Confidence 345556677762 66777888766543 3599999999999999999995 78875433311
Q ss_pred ------------------------------C----CCCCCccccc-cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCC-
Q 016579 280 ------------------------------M----GVELPKSLFQ-VDPEKVFGLTINPLVLQSIRKARARSLGFRDEI- 323 (387)
Q Consensus 280 ------------------------------p----~v~lP~eLf~-v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~- 323 (387)
- ++.++++-++ ...+.+|=|+.+++.|.+ |++.-|...-|
T Consensus 147 ~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~----RL~~~~~~~RPL 222 (303)
T PLN02199 147 AEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAH----RIAAVGTDSRPL 222 (303)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHH----HHhhcCCCCCCc
Confidence 0 2334443222 124567888888887765 55431110000
Q ss_pred -----CCCCC-CHHHHHHHHHHHHHHhhhCCCCcEEe------------CCCccHHHHHHHHHHHHhcc
Q 016579 324 -----RSNYS-EMDYVREELEFAGRIFAQNPVWPVIE------------VTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 324 -----~S~YA-~~e~I~~EL~~A~~lf~k~~g~pvID------------VT~kSIEEtAa~Il~~~~~r 374 (387)
...|. ..+.+.+=++.=+.+|++. --+|| |+++++||++.+|++.+..-
T Consensus 223 L~~~~~d~~~~~~~~L~~L~~~R~plY~~A--d~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~ 289 (303)
T PLN02199 223 LHDESGDAYSVAFKRLSAIWDERGEAYTNA--NARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSF 289 (303)
T ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHhC--CEEEecccccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 11122 1344443344444567763 45678 89999999999999988664
No 31
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=94.46 E-value=0.026 Score=56.46 Aligned_cols=29 Identities=38% Similarity=0.802 Sum_probs=24.9
Q ss_pred cCcEEEEc---cCCCCCChhhHHhh----hcCceee
Q 016579 246 KADIILSG---VSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 246 ~ADIVLvG---VSRTsKTPlSmYLA----~~GyKVA 274 (387)
..=||.|| |=+|||||+.+||| .+|+|++
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~ 62 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVG 62 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEE
Confidence 45699999 99999999999999 3578876
No 32
>PRK08233 hypothetical protein; Provisional
Probab=94.37 E-value=0.33 Score=42.52 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=40.8
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH-HHHHHHHHHHHHHhhh------CCCCcEEeCCCccHHHHHH
Q 016579 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM-DYVREELEFAGRIFAQ------NPVWPVIEVTGKAIEETAA 365 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~-e~I~~EL~~A~~lf~k------~~g~pvIDVT~kSIEEtAa 365 (387)
...+|=|+.+++.+.+-|..|-.. +. .-.+. +.+..=+...+..|.+ ...+-+|| +++++||+.+
T Consensus 98 ~d~~i~l~~~~~~~~~R~~~R~~~-~~------~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId-~~~~~e~i~~ 169 (182)
T PRK08233 98 IDVTIFIDTPLDIAMARRILRDFK-ED------TGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLD-GALSVEEIIN 169 (182)
T ss_pred cCEEEEEcCCHHHHHHHHHHHHhh-hc------cccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEc-CCCCHHHHHH
Confidence 356788888888765534444210 00 00111 1222222234444443 11345788 5699999999
Q ss_pred HHHHHHhcc
Q 016579 366 VVLRLYHDR 374 (387)
Q Consensus 366 ~Il~~~~~r 374 (387)
.|.+.+..+
T Consensus 170 ~i~~~l~~~ 178 (182)
T PRK08233 170 QIEEELYRR 178 (182)
T ss_pred HHHHHHHhC
Confidence 999998754
No 33
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.25 E-value=0.31 Score=43.82 Aligned_cols=123 Identities=21% Similarity=0.265 Sum_probs=72.2
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccCCCCCCc--------------cccc-----------------------
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVMGVELPK--------------SLFQ----------------------- 290 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLVp~v~lP~--------------eLf~----------------------- 290 (387)
|||+|+|++|||-+.-+|.+ +.-+.+ +|+---...|. +-|+
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~~~~~~~-~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt~~ 83 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQEFPDKFG-RVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGTSK 83 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHHSTTTEE-EEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcccccc-cceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhhcc
Confidence 79999999999999999984 333332 32221122222 1111
Q ss_pred ------cCCCcEEEEecChhHHHHHHHHHHhhcCC---CCC--------CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEE
Q 016579 291 ------VDPEKVFGLTINPLVLQSIRKARARSLGF---RDE--------IRSNYSEMDYVREELEFAGRIFAQNPVWPVI 353 (387)
Q Consensus 291 ------v~~~KI~GLTIdPerL~~IR~eRlk~lGl---~~~--------~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvI 353 (387)
...+|+.=|+++|+-+..+|+.....+.+ ... ..-...+.+.+.+.+..+++.|.....|-.+
T Consensus 84 ~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~fd~v 163 (183)
T PF00625_consen 84 SAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNEFDYV 163 (183)
T ss_dssp HHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGGSSEE
T ss_pred chhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhcCCEE
Confidence 12355555666777777776532211100 000 0112345677899999999988864124433
Q ss_pred eCCCccHHHHHHHHHHHHhc
Q 016579 354 EVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 354 DVT~kSIEEtAa~Il~~~~~ 373 (387)
=+ +-++|++...|.+++++
T Consensus 164 i~-n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 164 IV-NDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp EE-CSSHHHHHHHHHHHHHH
T ss_pred EE-CcCHHHHHHHHHHHHHh
Confidence 33 45899999999999864
No 34
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=94.10 E-value=0.034 Score=55.96 Aligned_cols=28 Identities=43% Similarity=0.612 Sum_probs=22.4
Q ss_pred CcEEEE---ccCCCCCChhhHHhh----hcCceee
Q 016579 247 ADIILS---GVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 247 ADIVLv---GVSRTsKTPlSmYLA----~~GyKVA 274 (387)
.=||-| +|.+|||||+.+||| ++|+||+
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ 83 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPG 83 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEE
Confidence 335655 588999999999999 3788887
No 35
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.09 E-value=0.49 Score=41.49 Aligned_cols=72 Identities=25% Similarity=0.202 Sum_probs=41.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH-HhhhC-CCCcEEeCCCccHHHHHHHHHHH
Q 016579 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGR-IFAQN-PVWPVIEVTGKAIEETAAVVLRL 370 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~-lf~k~-~g~pvIDVT~kSIEEtAa~Il~~ 370 (387)
+..+|-|..+++.+.+-..+| |-. ...|.......+.+..+.. ++... ..|-+||.+ +++||+.+.|++.
T Consensus 126 ~~~~i~l~~~~~~~~~R~~~R----~~~---~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~-~~~e~i~~~i~~~ 197 (200)
T cd01672 126 PDLTILLDIDPEVGLARIEAR----GRD---DRDEQEGLEFHERVREGYLELAAQEPERIIVIDAS-QPLEEVLAEILKA 197 (200)
T ss_pred CCEEEEEeCCHHHHHHHHHhc----CCc---chhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHH
Confidence 456888899987765543333 211 1111222333444444333 33331 147788886 5799999999987
Q ss_pred Hh
Q 016579 371 YH 372 (387)
Q Consensus 371 ~~ 372 (387)
+.
T Consensus 198 i~ 199 (200)
T cd01672 198 IL 199 (200)
T ss_pred Hh
Confidence 74
No 36
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.02 E-value=0.59 Score=41.38 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|||+|.|++|||=+.-.|+.
T Consensus 4 ~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 37
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.87 E-value=0.035 Score=45.61 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=23.4
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeee
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN 275 (387)
|+|.|+|+||||=++-.||+ +|+++-+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~ 29 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVIS 29 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEE
Confidence 78999999999999999996 4877633
No 38
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.51 E-value=0.3 Score=44.12 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016579 330 MDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 330 ~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
.+.+++-|+.+ ..+.+. .+-||| ++.++||+++.|++++..
T Consensus 136 ~~~i~~rl~r~-~~~~~a-d~~vi~-~~~s~ee~~~~i~~~l~~ 176 (186)
T PRK10078 136 ASEINARLARA-ARYQPQ-DCHTLN-NDGSLRQSVDTLLTLLHL 176 (186)
T ss_pred HHHHHHHHHHh-hhhccC-CEEEEe-CCCCHHHHHHHHHHHHhh
Confidence 34555555332 233443 567888 788999999999998854
No 39
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.04 E-value=0.61 Score=44.07 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyK 272 (387)
|.|.|.|+||||-++-.|| ++|+.
T Consensus 5 i~i~G~~GsGKst~~~~la~~~~~~ 29 (217)
T TIGR00017 5 IAIDGPSGAGKSTVAKAVAEKLGYA 29 (217)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999 56643
No 40
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=93.01 E-value=0.71 Score=46.18 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=78.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCce-eeeccccC-------------------------CCCCCccccc--------cCCC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYK-VANVPIVM-------------------------GVELPKSLFQ--------VDPE 294 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyK-VAN~PLVp-------------------------~v~lP~eLf~--------v~~~ 294 (387)
||+-|.|++|||=-.=-|=-.||- |-|+|.-- +-.....+++ -..-
T Consensus 4 vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~ 83 (284)
T PF03668_consen 4 VIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDLFEALDELRKKGIDV 83 (284)
T ss_pred EEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHHHHHHHHHHhcCCce
Confidence 688899999999887778788865 56888642 0011111211 1123
Q ss_pred cEEEEecChhHHHHHHH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016579 295 KVFGLTINPLVLQSIRK-ARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 295 KI~GLTIdPerL~~IR~-eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
+|+=|+.+.+.|.+-=+ .|++. =| ......+|.|++|-+.-..|-... =-|||+|+.++-|....|.+.+..
T Consensus 84 ~ilFLdA~d~~LirRy~eTRR~H-PL----~~~~~~le~I~~Er~~L~~lr~~A--d~vIDTs~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSETRRRH-PL----SSDGSLLEAIEKERELLEPLRERA--DLVIDTSNLSVHQLRERIRERFGG 156 (284)
T ss_pred EEEEEECChHHHHHHHHhccCCC-CC----CCCCCcHHHHHHHHHHHHHHHHhC--CEEEECCCCCHHHHHHHHHHHhcc
Confidence 56667777777665222 22211 11 122345788999988888886653 568999999999999999999875
Q ss_pred c
Q 016579 374 R 374 (387)
Q Consensus 374 r 374 (387)
.
T Consensus 157 ~ 157 (284)
T PF03668_consen 157 D 157 (284)
T ss_pred C
Confidence 4
No 41
>PRK14530 adenylate kinase; Provisional
Probab=92.95 E-value=1.3 Score=40.84 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.4
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceee
Q 016579 248 DIILSGVSRTGKTPLSIYLA-QKGYKVA 274 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKVA 274 (387)
-|+|+|.++||||=++--|| .+|+..-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 48999999999999999999 6787544
No 42
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=92.89 E-value=0.07 Score=54.08 Aligned_cols=31 Identities=35% Similarity=0.558 Sum_probs=25.4
Q ss_pred cCcEEEEc---cCCCCCChhhHHhh----hcCceeeec
Q 016579 246 KADIILSG---VSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 246 ~ADIVLvG---VSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
..=||.|| |=+|||||+.+||| ++|+|++-+
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~Il 92 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVV 92 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEE
Confidence 35588888 88999999999999 368887743
No 43
>PRK00625 shikimate kinase; Provisional
Probab=92.75 E-value=1.2 Score=40.77 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=72.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee----------e------cc---------------------------cc-C--C
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA----------N------VP---------------------------IV-M--G 281 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVA----------N------~P---------------------------LV-p--~ 281 (387)
|+|+|..+||||=++=.||+ .||+.- + ++ +| - +
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VIs~GGg 82 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIVALGGG 82 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence 89999999999999999994 577541 0 11 00 0 1
Q ss_pred CCCCcccccc--CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCc-----EEe
Q 016579 282 VELPKSLFQV--DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWP-----VIE 354 (387)
Q Consensus 282 v~lP~eLf~v--~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~p-----vID 354 (387)
..+..+.|+. ..+.||-|+.+++.+. +|++.-++.+ ...| .+.+.+-++.=..+|++.-.+. |++
T Consensus 83 ~~~~~e~~~~l~~~~~Vv~L~~~~e~l~----~Rl~~R~~~~--~~~~--~~~~~~ll~~R~~~Y~~~ad~~i~~~~~~~ 154 (173)
T PRK00625 83 TLMIEPSYAHIRNRGLLVLLSLPIATIY----QRLQKRGLPE--RLKH--APSLEEILSQRIDRMRSIADYIFSLDHVAE 154 (173)
T ss_pred ccCCHHHHHHHhcCCEEEEEECCHHHHH----HHHhcCCCCc--ccCc--HHHHHHHHHHHHHHHHHHCCEEEeCCCccc
Confidence 2233333322 2356889999987665 4554434422 1223 5667777777778887731332 467
Q ss_pred CCCccHHHHHHHHHHHH
Q 016579 355 VTGKAIEETAAVVLRLY 371 (387)
Q Consensus 355 VT~kSIEEtAa~Il~~~ 371 (387)
++++|+-..+..|+..+
T Consensus 155 ~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 155 TSSESLMRACQSFCTLL 171 (173)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88899888888887654
No 44
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.69 E-value=0.99 Score=40.75 Aligned_cols=122 Identities=19% Similarity=0.217 Sum_probs=69.8
Q ss_pred EEEEccCCCCCChhhHHhhhc---Cceeeec----cccC------------------------------------CCCCC
Q 016579 249 IILSGVSRTGKTPLSIYLAQK---GYKVANV----PIVM------------------------------------GVELP 285 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~---GyKVAN~----PLVp------------------------------------~v~lP 285 (387)
|||+|+|++||+-++-.|.+. +|..+-- |.-| +++.+
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~~~ 84 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTSKE 84 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccCHH
Confidence 899999999999999999865 4433310 1111 11111
Q ss_pred cccc-ccCCCcEEEEecChhHHHHHHHHHHhhcC--C-CCC--------CCCCCCCHHHHHHHHHHHHHHhhhCCC-CcE
Q 016579 286 KSLF-QVDPEKVFGLTINPLVLQSIRKARARSLG--F-RDE--------IRSNYSEMDYVREELEFAGRIFAQNPV-WPV 352 (387)
Q Consensus 286 ~eLf-~v~~~KI~GLTIdPerL~~IR~eRlk~lG--l-~~~--------~~S~YA~~e~I~~EL~~A~~lf~k~~g-~pv 352 (387)
. +. .+..+|++=|+++|+-+.++++.-....- + +.+ ..-.=-+.+.+++-|..|++.+... + +-.
T Consensus 85 ~-i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~-~~fd~ 162 (184)
T smart00072 85 T-IRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEY-HLFDY 162 (184)
T ss_pred H-HHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-ccCCE
Confidence 0 11 12347788888888888777642110000 0 000 0000124577888888898877652 2 222
Q ss_pred EeCCCccHHHHHHHHHHHHhc
Q 016579 353 IEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 353 IDVT~kSIEEtAa~Il~~~~~ 373 (387)
+=+ +-.++++...+.++++.
T Consensus 163 ~I~-n~~l~~~~~~l~~~i~~ 182 (184)
T smart00072 163 VIV-NDDLEDAYEELKEILEA 182 (184)
T ss_pred EEE-CcCHHHHHHHHHHHHHh
Confidence 212 23799999999988864
No 45
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=92.66 E-value=0.11 Score=52.17 Aligned_cols=40 Identities=45% Similarity=0.657 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCcCcEEEEc---cCCCCCChhhHHhh----hcCceee
Q 016579 235 QDDGALPQNLQKADIILSG---VSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 235 hDDG~~~~~L~~ADIVLvG---VSRTsKTPlSmYLA----~~GyKVA 274 (387)
||-|....-=..+=||-|| |=+|||||+.+||| .+|||++
T Consensus 23 y~~g~~~~~~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~ 69 (326)
T PF02606_consen 23 YDRGLLKSYRLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPA 69 (326)
T ss_pred HhcCCcccCCCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceE
Confidence 4455444444456688888 77999999999999 5789887
No 46
>PRK14528 adenylate kinase; Provisional
Probab=92.62 E-value=0.34 Score=44.16 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee------------cc-------------ccC-------------CC-------
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN------------VP-------------IVM-------------GV------- 282 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN------------~P-------------LVp-------------~v------- 282 (387)
|+++|.+++|||-+|-+|| .+|+.+.+ .| ++| ..
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g~v 83 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNGFL 83 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCcEE
Confidence 8999999999999999999 55665531 01 111 00
Q ss_pred --CCCcc------ccc------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHH-------HHHHHH
Q 016579 283 --ELPKS------LFQ------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVRE-------ELEFAG 341 (387)
Q Consensus 283 --~lP~e------Lf~------v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~-------EL~~A~ 341 (387)
.+|.. |++ .....++-|+++++.+.+--..|....|-.+ -+.|.+++ +..-.-
T Consensus 84 iDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~d------d~~e~i~~Rl~~y~~~~~pv~ 157 (186)
T PRK14528 84 LDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRAD------DNEATIKNRLDNYNKKTLPLL 157 (186)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCC------CCHHHHHHHHHHHHHHhHHHH
Confidence 23433 221 3567899999999988764444433233221 12334433 334445
Q ss_pred HHhhhCCCCcEEeCCCccHHHHHHHHHHH
Q 016579 342 RIFAQNPVWPVIEVTGKAIEETAAVVLRL 370 (387)
Q Consensus 342 ~lf~k~~g~pvIDVT~kSIEEtAa~Il~~ 370 (387)
+.|++.-.|..|| .++++||+...|.+.
T Consensus 158 ~~y~~~~~~~~i~-~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 158 DFYAAQKKLSQVN-GVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHhCCCEEEEE-CCCCHHHHHHHHHHh
Confidence 6677642377788 557899999988754
No 47
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=92.36 E-value=1.4 Score=48.07 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=43.7
Q ss_pred EEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-----hh---hCCCCcEEeCCCccHHHHHHHHH
Q 016579 297 FGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRI-----FA---QNPVWPVIEVTGKAIEETAAVVL 368 (387)
Q Consensus 297 ~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~l-----f~---k~~g~pvIDVT~kSIEEtAa~Il 368 (387)
|=||.+++.=.+-|-..++..|. =.+.+.+.+|+..=.+. .. +-.+--+||+|+.+|||+...|+
T Consensus 578 ifl~a~~~~Ra~Rr~~~~~~~~~-------~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~ 650 (661)
T PRK11860 578 VFLTASAEARAERRYKQLISKGI-------SANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVL 650 (661)
T ss_pred EEEECChhHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHH
Confidence 44777776544444444444443 15677777777432111 10 10144699999999999999999
Q ss_pred HHHhc
Q 016579 369 RLYHD 373 (387)
Q Consensus 369 ~~~~~ 373 (387)
+++.+
T Consensus 651 ~~i~~ 655 (661)
T PRK11860 651 DWWQE 655 (661)
T ss_pred HHHHh
Confidence 99975
No 48
>PRK13975 thymidylate kinase; Provisional
Probab=92.31 E-value=0.79 Score=40.97 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=46.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC---HHHHHHHHHHHHH---HhhhCCCCcEEeCCCccHHHHHH
Q 016579 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE---MDYVREELEFAGR---IFAQNPVWPVIEVTGKAIEETAA 365 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~---~e~I~~EL~~A~~---lf~k~~g~pvIDVT~kSIEEtAa 365 (387)
.+..+|-|+++++.+.+ |+..-+. ..+.+ .+++.++...--. ...+. +|-+||++++++||+++
T Consensus 113 ~pd~vi~L~~~~e~~~~----Rl~~r~~-----~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~Id~~~~~~eev~~ 182 (196)
T PRK13975 113 KPDLVFLLDVDIEEALK----RMETRDK-----EIFEKKEFLKKVQEKYLELANNEKFMPKY-GFIVIDTTNKSIEEVFN 182 (196)
T ss_pred CCCEEEEEcCCHHHHHH----HHhccCc-----cccchHHHHHHHHHHHHHHHhhcccCCcC-CEEEEECCCCCHHHHHH
Confidence 35679999999998865 3322221 12332 2344443322111 11243 68999999999999999
Q ss_pred HHHHHHhccc
Q 016579 366 VVLRLYHDRK 375 (387)
Q Consensus 366 ~Il~~~~~r~ 375 (387)
.|++.+..+.
T Consensus 183 ~I~~~i~~~~ 192 (196)
T PRK13975 183 EILNKIKDKI 192 (196)
T ss_pred HHHHHHHHhC
Confidence 9999986653
No 49
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=92.17 E-value=0.11 Score=52.91 Aligned_cols=29 Identities=45% Similarity=0.748 Sum_probs=25.2
Q ss_pred cCcEEEEc---cCCCCCChhhHHhh----hcCceee
Q 016579 246 KADIILSG---VSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 246 ~ADIVLvG---VSRTsKTPlSmYLA----~~GyKVA 274 (387)
.+=||.|| |=+|||||+.|||| ++|+|+.
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~g 81 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVG 81 (336)
T ss_pred CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeE
Confidence 47799999 88999999999999 5788775
No 50
>PRK14527 adenylate kinase; Provisional
Probab=92.14 E-value=2.2 Score=38.58 Aligned_cols=72 Identities=17% Similarity=0.059 Sum_probs=42.1
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHH-------HHHHHHHHHHhhhCCCCcEEeCCCccHHHHHH
Q 016579 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYV-------REELEFAGRIFAQNPVWPVIEVTGKAIEETAA 365 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I-------~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa 365 (387)
...++-|+++++.+.+ |+..-+... ..+++ +.+.+ +++.+...+.|+..-.+-.|| -++++||+..
T Consensus 112 ~~~vi~l~~~~~~~~~----Rl~~R~~~~-~r~dd-~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id-~~~~~~~v~~ 184 (191)
T PRK14527 112 LLAVVLLEVPDEELIR----RIVERARQE-GRSDD-NEETVRRRQQVYREQTQPLVDYYEARGHLKRVD-GLGTPDEVYA 184 (191)
T ss_pred CCEEEEEECCHHHHHH----HHHcCcccC-CCCCC-CHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEE-CCCCHHHHHH
Confidence 3346778888877654 443333221 12233 23333 234445556677642367788 5679999999
Q ss_pred HHHHHH
Q 016579 366 VVLRLY 371 (387)
Q Consensus 366 ~Il~~~ 371 (387)
.|...+
T Consensus 185 ~i~~~l 190 (191)
T PRK14527 185 RILKAL 190 (191)
T ss_pred HHHHhh
Confidence 998765
No 51
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=91.47 E-value=2.3 Score=39.08 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
|+|+|.++||||-+|-.|| .+|+.+-+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 8999999999999999999 578877654
No 52
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=91.06 E-value=2.8 Score=38.08 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=78.9
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG-AMLVYTLADPSMAES 173 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~-~iV~~Tlvd~elr~~ 173 (387)
..+..||++-.+- +.++.++..+..+||++ .+.-+..++. +.++.+++++.+.+.+ .+|+--+-.|.=-..
T Consensus 46 ~~~~~ifllG~~~-~~~~~~~~~l~~~yP~l------~ivg~~~g~f-~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~ 117 (172)
T PF03808_consen 46 QRGKRIFLLGGSE-EVLEKAAANLRRRYPGL------RIVGYHHGYF-DEEEEEAIINRINASGPDIVFVGLGAPKQERW 117 (172)
T ss_pred HcCCeEEEEeCCH-HHHHHHHHHHHHHCCCe------EEEEecCCCC-ChhhHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 4568999998886 45667777899999985 3444455655 7788899999987766 599999999877778
Q ss_pred HHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016579 174 AKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 174 l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+.+.....+.+.+=-+|-.++.++......|
T Consensus 118 ~~~~~~~l~~~v~i~vG~~~d~~aG~~~raP 148 (172)
T PF03808_consen 118 IARHRQRLPAGVIIGVGGAFDFLAGKVKRAP 148 (172)
T ss_pred HHHHHHHCCCCEEEEECchhhhhccCcCccC
Confidence 8888888888877778999888886655544
No 53
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=90.70 E-value=1.7 Score=40.64 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=72.3
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccC---------CCCCCccccc--------------------c-------
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM---------GVELPKSLFQ--------------------V------- 291 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp---------~v~lP~eLf~--------------------v------- 291 (387)
-|||||.-++|||-..-.||+. -|+|++. +..+| ++|+ .
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~----L~~~F~D~D~~Ie~~~g~sI~-eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaT 78 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKA----LNLPFIDTDQEIEKRTGMSIA-EIFEEEGEEGFRRLETEVLKELLEEDNAVIAT 78 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHH----cCCCcccchHHHHHHHCcCHH-HHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEC
Confidence 4899999999999999999943 4667765 22221 1111 1
Q ss_pred ---------------CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH-HHHHHHHHHHHHHhhhCCCCcEEeC
Q 016579 292 ---------------DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM-DYVREELEFAGRIFAQNPVWPVIEV 355 (387)
Q Consensus 292 ---------------~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~-e~I~~EL~~A~~lf~k~~g~pvIDV 355 (387)
....+|=|..+++.|.+ |++ .-..-|--.=.+. +.+++=++.=.-+|++. .-.++++
T Consensus 79 GGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~----Rl~--~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~-a~~~~~~ 151 (172)
T COG0703 79 GGGAVLSEENRNLLKKRGIVVYLDAPFETLYE----RLQ--RDRKRPLLQTEDPREELEELLEERQPLYREV-ADFIIDT 151 (172)
T ss_pred CCccccCHHHHHHHHhCCeEEEEeCCHHHHHH----Hhc--cccCCCcccCCChHHHHHHHHHHHHHHHHHh-CcEEecC
Confidence 23468888899988875 442 0000011111222 22333334445578885 7899999
Q ss_pred CCccHHHHHHHHHHHHhc
Q 016579 356 TGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 356 T~kSIEEtAa~Il~~~~~ 373 (387)
++++ ++++..|++.+..
T Consensus 152 ~~~~-~~v~~~i~~~l~~ 168 (172)
T COG0703 152 DDRS-EEVVEEILEALEG 168 (172)
T ss_pred CCCc-HHHHHHHHHHHHH
Confidence 9999 9999999998854
No 54
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.51 E-value=0.16 Score=52.26 Aligned_cols=50 Identities=38% Similarity=0.608 Sum_probs=39.8
Q ss_pred HHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 220 EEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 220 ~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
-+.|+||..-+ ..|| =.|.+..|.|||+.+||||=|.--|| |.-|||+..
T Consensus 78 YNHYKRl~~~~---~~~d----vEL~KSNILLiGPTGsGKTlLAqTLA----k~LnVPFai 127 (408)
T COG1219 78 YNHYKRLNNKE---DNDD----VELSKSNILLIGPTGSGKTLLAQTLA----KILNVPFAI 127 (408)
T ss_pred hhHHHHHhccC---CCCc----eeeeeccEEEECCCCCcHHHHHHHHH----HHhCCCeee
Confidence 35789998776 4444 67999999999999999997777776 457999875
No 55
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=89.82 E-value=1.8 Score=46.19 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=45.2
Q ss_pred EEEecChhHHHHHH-HHHHhhcCCCCCCCCCCCC-HHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhcc
Q 016579 297 FGLTINPLVLQSIR-KARARSLGFRDEIRSNYSE-MDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 297 ~GLTIdPerL~~IR-~eRlk~lGl~~~~~S~YA~-~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
|=++++-+..+.=| ..|-+.++... +...|.. .+.|+.==+|--+--+++ |+|+|| +-.|++|-..|++.+-++
T Consensus 387 flv~isdeeeH~~Rf~~Ra~~~~~~r-~~~ky~~~f~~IR~IQdyLv~~A~~~-~ipvI~--n~nid~tv~~~l~~i~~~ 462 (475)
T PRK12337 387 MLVTLPDEALHRRRFELRDRETGASR-PRERYLRHFEEIRLIQDHLLRLARQE-GVPVLP--GEDLDESIDKALEVVLRR 462 (475)
T ss_pred EEEEECCHHHHHHHHHHHhhhccCCC-chhHHHHhHHHHHHHHHHHHHHHHHc-CCCeec--CccHHHHHHHHHHHHHHH
Confidence 46777777666644 34555555433 3455653 233333223444445665 999995 556889999998887665
Q ss_pred c
Q 016579 375 K 375 (387)
Q Consensus 375 ~ 375 (387)
.
T Consensus 463 ~ 463 (475)
T PRK12337 463 V 463 (475)
T ss_pred H
Confidence 3
No 56
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=89.80 E-value=2.3 Score=45.58 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=45.2
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC--CHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016579 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS--EMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA--~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
..+|=|+.+++.|.+ |++.-+ ....+. +.+++++=++.=+.+|++. ---+||++++++||++..|++.+
T Consensus 104 g~vv~L~~~~~~l~~----Rl~~~~----~RPll~~~~~~~~~~l~~~R~~~Y~~~-Ad~~i~~~~~~~~~~~~~i~~~~ 174 (542)
T PRK14021 104 GRVVYLDADPKEAME----RANRGG----GRPMLNGDANKRWKKLFKQRDPVFRQV-ANVHVHTRGLTPQAAAKKLIDMV 174 (542)
T ss_pred CEEEEEECCHHHHHH----HHhCCC----CCCCCCCCcHHHHHHHHHHHHHHHHhh-CCEEEECCCCCHHHHHHHHHHHH
Confidence 356777778877765 443111 011222 2344433223335677774 46789999999999999999988
Q ss_pred hccc
Q 016579 372 HDRK 375 (387)
Q Consensus 372 ~~r~ 375 (387)
..+.
T Consensus 175 ~~~~ 178 (542)
T PRK14021 175 AERT 178 (542)
T ss_pred Hhcc
Confidence 6543
No 57
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=89.76 E-value=0.9 Score=47.50 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=30.4
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016579 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
-|||.|||-+.+|||=|---|.+.--|+||||++
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT 191 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT 191 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcc
Confidence 4899999999999999888888776899999976
No 58
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=89.04 E-value=2.7 Score=44.63 Aligned_cols=108 Identities=20% Similarity=0.230 Sum_probs=63.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeeccccC----CCCCC--------------------------------------
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM----GVELP-------------------------------------- 285 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLVp----~v~lP-------------------------------------- 285 (387)
|+|+|.++||||=++-.|| ..|+.+...=-+- +..++
T Consensus 3 I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggvv~ 82 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVVI 82 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCcccc
Confidence 8999999999999999999 5676543211000 11111
Q ss_pred --c--cccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHH
Q 016579 286 --K--SLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIE 361 (387)
Q Consensus 286 --~--eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIE 361 (387)
. ++++ +..+|-|+.+++.|. +|++.-+- +-... ..+++++-++.=+.+|++ |-+||+++++++
T Consensus 83 ~~~~r~~l~--~~~vI~L~as~e~l~----~Rl~~~~R---PLl~~-~~e~l~~L~~~R~~lY~~---~~~IDt~~~s~~ 149 (488)
T PRK13951 83 DPENRELLK--KEKTLFLYAPPEVLM----ERVTTENR---PLLRE-GKERIREIWERRKQFYTE---FRGIDTSKLNEW 149 (488)
T ss_pred ChHHHHHHh--cCeEEEEECCHHHHH----HHhccCCC---CCccc-cHHHHHHHHHHHHHHHhc---ccEEECCCCCHH
Confidence 0 1121 234667777776544 45532221 11111 245666544444566665 348999999998
Q ss_pred HHHHHHHH
Q 016579 362 ETAAVVLR 369 (387)
Q Consensus 362 EtAa~Il~ 369 (387)
|++..|+-
T Consensus 150 e~~~~iv~ 157 (488)
T PRK13951 150 ETTALVVL 157 (488)
T ss_pred HHHHHHHH
Confidence 88877754
No 59
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=89.00 E-value=0.32 Score=37.05 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=24.5
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeecc
Q 016579 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyKVAN~P 277 (387)
+++.|-.++|||+++..||+ .|+||..+-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 56778899999999999883 399998875
No 60
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=88.41 E-value=1.1 Score=44.74 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhhHHhhh-cCce
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyK 272 (387)
|+|+|+++||||-++.-||+ .|..
T Consensus 7 i~i~GptgsGKt~la~~la~~~~~~ 31 (307)
T PRK00091 7 IVIVGPTASGKTALAIELAKRLNGE 31 (307)
T ss_pred EEEECCCCcCHHHHHHHHHHhCCCc
Confidence 89999999999999999994 4443
No 61
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.30 E-value=0.68 Score=40.31 Aligned_cols=99 Identities=15% Similarity=0.101 Sum_probs=52.4
Q ss_pred EEEEccCCCCCChhhHHhhhc--CceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHH-HHHHHhhcCCCCCCCC
Q 016579 249 IILSGVSRTGKTPLSIYLAQK--GYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSI-RKARARSLGFRDEIRS 325 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~--GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~I-R~eRlk~lGl~~~~~S 325 (387)
|+|+|.|++|||-+.-.|++. .--...++.+-.-+-+.++ +.....-+ +.+.+.+. .+..+-..+.- .+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~---~g~~~~~v--~~~~~~~~~~~~~f~e~~~~--~~~ 74 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEV---DGVDYHFV--SKEEFERLIENGEFLEWAEF--HGN 74 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCcc---CCceeEEe--CHHHHHHHHHcCCeEEEEEE--cCE
Confidence 789999999999999999954 1112234433333333333 33333333 34444332 11111111110 123
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHH
Q 016579 326 NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIE 361 (387)
Q Consensus 326 ~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIE 361 (387)
.|...... .++++++. .++++|++..++.
T Consensus 75 ~yg~~~~~------i~~~~~~g-~~~il~~~~~~~~ 103 (137)
T cd00071 75 YYGTSKAA------VEEALAEG-KIVILEIDVQGAR 103 (137)
T ss_pred EecCcHHH------HHHHHhCC-CeEEEEecHHHHH
Confidence 46554332 23456776 7999999877763
No 62
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.26 E-value=0.35 Score=39.55 Aligned_cols=24 Identities=46% Similarity=0.610 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyK 272 (387)
|+|.|+++||||=++-.|| +.|+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~ 25 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP 25 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc
Confidence 6899999999999999999 45543
No 63
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=88.11 E-value=3.6 Score=41.30 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=94.4
Q ss_pred ccCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEEcCCHHH
Q 016579 94 AMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYTLADPSM 170 (387)
Q Consensus 94 ~~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~Tlvd~el 170 (387)
...++.+++|.|-- .+...++.=....+.+ ++.++.+.+|---|.+++.+.|+++..+. +|+++==.=+.+
T Consensus 29 ~~P~Lavilvgddp--aS~~YV~~K~k~~~~i----Gi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hl 102 (283)
T COG0190 29 FKPGLAVILVGDDP--ASQVYVRSKKKAAEEI----GIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHL 102 (283)
T ss_pred CCceEEEEEeCCCH--HHHHHHHHHHHHHHHc----CCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Confidence 35668889998877 4455555444444332 35688999999999999999999986554 566642222232
Q ss_pred H--HHHHHHHHHcCCCEeecchH-HHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcC
Q 016579 171 A--ESAKKACELWGIPSTDVLGP-ITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKA 247 (387)
Q Consensus 171 r--~~l~~~~~~~gi~~vDllgp-~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~A 247 (387)
- ..++.-+-+++ ||=|.| -+..|.. | ++.-+| ..| .||=.-+++=+. +|...
T Consensus 103 d~~~il~~I~p~KD---VDG~hp~N~g~L~~--~-~~~~~P-CTp--------------~gi~~ll~~~~i----~l~Gk 157 (283)
T COG0190 103 DEQKLLQAIDPEKD---VDGFHPYNLGKLAQ--G-EPGFLP-CTP--------------AGIMTLLEEYGI----DLRGK 157 (283)
T ss_pred CHHHHHhhcCcCCC---ccccChhHhcchhc--C-CCCCCC-CCH--------------HHHHHHHHHhCC----CCCCC
Confidence 2 44444454544 377777 3333321 1 111111 133 334444444443 67778
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceee
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
++|+||-|..-=-|++++|.+.|+.|.
T Consensus 158 ~~vVVGrS~iVGkPla~lL~~~naTVt 184 (283)
T COG0190 158 NVVVVGRSNIVGKPLALLLLNANATVT 184 (283)
T ss_pred EEEEECCCCcCcHHHHHHHHhCCCEEE
Confidence 899999999999999999999888763
No 64
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.10 E-value=3.2 Score=35.61 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=49.6
Q ss_pred HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecc
Q 016579 110 TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVL 189 (387)
Q Consensus 110 TAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~gi~~vDll 189 (387)
-++.+.+.+...+|++ ++..+.-.+ +.+.+.+.++. --+||.++-+.+.+..+.+.|.++++|+++..
T Consensus 57 Ka~~~~~~l~~~np~~------~v~~~~~~~--~~~~~~~~~~~----~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 57 KAEAAKERLQEINPDV------EVEAIPEKI--DEENIEELLKD----YDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHHHHSTTS------EEEEEESHC--SHHHHHHHHHT----SSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHhcCce------eeeeeeccc--ccccccccccC----CCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 4677777777788874 343333333 66666666632 35999999999999999999999999999864
No 65
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.33 E-value=0.35 Score=51.51 Aligned_cols=45 Identities=31% Similarity=0.488 Sum_probs=34.0
Q ss_pred hhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 232 TIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 232 avkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
+..-|+-..-=.|++..|+|||+|+||||=|.-=|| |+-|||++-
T Consensus 212 ~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLA----r~ldVPfaI 256 (564)
T KOG0745|consen 212 AKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLA----RVLDVPFAI 256 (564)
T ss_pred cccccccccceeeecccEEEECCCCCchhHHHHHHH----HHhCCCeEE
Confidence 333444333447999999999999999996655555 789999985
No 66
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=87.31 E-value=1.6 Score=43.81 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
-|||.|||.+.+|||=|--.|.+.-.+|+|||+.-
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT 191 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTT 191 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc
Confidence 49999999999999999888887668999999763
No 67
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=87.11 E-value=2.9 Score=37.59 Aligned_cols=113 Identities=17% Similarity=0.035 Sum_probs=66.1
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEec---ChhHHHHHHHHHHhhcCCCCC-
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTI---NPLVLQSIRKARARSLGFRDE- 322 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTI---dPerL~~IR~eRlk~lGl~~~- 322 (387)
.-||++|.+++|||=+...|.+. +..-++|..-+...|...+..+..++--..+ +-+++..++.... .|-..-
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~--~~~~~~l 82 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD-EFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYY--RGANGIL 82 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC-cCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHh--cCCCEEE
Confidence 45999999999999999988754 4445566555667777776666544444434 4566666666553 121100
Q ss_pred ---CCCCCCCHHHHHHHHH-HHHHHhhhCCCCcEEeCCCccHHHHH
Q 016579 323 ---IRSNYSEMDYVREELE-FAGRIFAQNPVWPVIEVTGKAIEETA 364 (387)
Q Consensus 323 ---~~S~YA~~e~I~~EL~-~A~~lf~k~~g~pvIDVT~kSIEEtA 364 (387)
....-.+.+.+.+++. ..+.... . +.|+|+|-+|.=-...
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~-~-~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAP-D-DVPILLVGNKIDLFDE 126 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCC-C-CceEEEEecccccccc
Confidence 1122133333444433 3333332 2 5899999988754444
No 68
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=86.35 E-value=5.5 Score=43.94 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHH-----HHH--hhhCCCCcEEeCCCccHHHHHHHHHHHHhcc
Q 016579 328 SEMDYVREELEFA-----GRI--FAQNPVWPVIEVTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 328 A~~e~I~~EL~~A-----~~l--f~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r 374 (387)
.+.+.|.+|+..= +.+ +....++-+||+|+.++||+...|++++.+-
T Consensus 179 ~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~~ 232 (712)
T PRK09518 179 ETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVEDA 232 (712)
T ss_pred CCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHhh
Confidence 6677777766321 222 3333478899999999999999999988653
No 69
>PRK14737 gmk guanylate kinase; Provisional
Probab=86.01 E-value=15 Score=33.79 Aligned_cols=122 Identities=11% Similarity=0.141 Sum_probs=65.5
Q ss_pred EEEEccCCCCCChhhHHhhhc--CceeeeccccCCCCCCccc------------c-------------------------
Q 016579 249 IILSGVSRTGKTPLSIYLAQK--GYKVANVPIVMGVELPKSL------------F------------------------- 289 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~--GyKVAN~PLVp~v~lP~eL------------f------------------------- 289 (387)
|||+|+|++|||-+.=+|.+. ++ ..-+|.+-.-+=|.|. |
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt~~~ 85 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTPKA 85 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecCcHH
Confidence 899999999999999999854 22 2224444322222211 0
Q ss_pred ----ccCCCcEEEEecChhHHHHHHHHHHh----hcCCCC-C--------CCCCCCCHHHHHHHHHHHHHHhhhCCCCcE
Q 016579 290 ----QVDPEKVFGLTINPLVLQSIRKARAR----SLGFRD-E--------IRSNYSEMDYVREELEFAGRIFAQNPVWPV 352 (387)
Q Consensus 290 ----~v~~~KI~GLTIdPerL~~IR~eRlk----~lGl~~-~--------~~S~YA~~e~I~~EL~~A~~lf~k~~g~pv 352 (387)
....+|++=|+++++-+..+|+. .- ..=+.. + ..-.--+.+.+++=|+.+..-+.+.-.|-.
T Consensus 86 ~i~~~~~~g~~~i~d~~~~g~~~l~~~-~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~~~D~ 164 (186)
T PRK14737 86 FIEDAFKEGRSAIMDIDVQGAKIIKEK-FPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEFDY 164 (186)
T ss_pred HHHHHHHcCCeEEEEcCHHHHHHHHHh-CCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCCE
Confidence 13447788888888888887752 10 000100 0 000011344555545544332332112332
Q ss_pred EeCCCccHHHHHHHHHHHHhc
Q 016579 353 IEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 353 IDVT~kSIEEtAa~Il~~~~~ 373 (387)
|=+.+ ..|++-..+.+++..
T Consensus 165 vI~N~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 165 KIIND-DLEDAIADLEAIICG 184 (186)
T ss_pred EEECc-CHHHHHHHHHHHHhc
Confidence 22233 789999999888754
No 70
>PLN02796 D-glycerate 3-kinase
Probab=84.83 E-value=5.6 Score=40.93 Aligned_cols=111 Identities=24% Similarity=0.245 Sum_probs=69.0
Q ss_pred ccccCCHHHHHHHHHHHHhCCCEEE-EEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 016579 138 FSGIDDVEQLMVIIKQAAKDGAMLV-YTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNF 216 (387)
Q Consensus 138 ~p~V~t~e~l~~ii~~a~~~~~iV~-~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~ 216 (387)
-|.|.+.+.+.+.| ..|+++= +-|...++++.+.+... +...|...||... .
T Consensus 8 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-----------~ 60 (347)
T PLN02796 8 PPDVSDVADLREFI----CSGPLISKLGLTAEDVAESIDEWIA------------HGLRLCRLLQFDE-----------L 60 (347)
T ss_pred CCCcccHHHHHHHH----hcCcchhhhCCCHHHHHHHHHHHHH------------HHHHHHHHcCCCc-----------c
Confidence 46777777776654 4555443 44555667776665543 1566777777765 3
Q ss_pred CCcHHHHhhhh------------hhhhhhh-CCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016579 217 PLSEEYFRRIE------------AIEFTIK-QDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (387)
Q Consensus 217 ~ld~~YF~RIe------------AIeFavk-hDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~----~GyKVAN~PL 278 (387)
.|++.|..|+. -+++.++ +-+|...+-+- |.|+|.|+||||=++-.|+. .|++++.+.+
T Consensus 61 ~l~~~~~~~~~~~~~P~~~~il~~l~~~~~~~~~G~~~~pli---IGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~Isi 136 (347)
T PLN02796 61 SLSASQKARVYHYYLPVYLWCEDQLEAHRSKFKDGDEIPPLV---IGISAPQGCGKTTLVFALVYLFNATGRRAASLSI 136 (347)
T ss_pred cCCHHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCCCCEE---EEEECCCCCcHHHHHHHHHHHhcccCCceeEEEE
Confidence 35666666665 3333331 12444322222 77889999999999988882 3677877775
No 71
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=84.68 E-value=0.6 Score=40.71 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyK 272 (387)
|+|+|.|+||||=++..|| +.|+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~ 25 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAK 25 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCe
Confidence 6899999999999999999 44633
No 72
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=84.62 E-value=0.62 Score=41.77 Aligned_cols=28 Identities=36% Similarity=0.647 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyKVAN~ 276 (387)
|.++|.+++|||-++.+|+. +||||+=+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 67899999999999999883 59999854
No 73
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=84.46 E-value=0.73 Score=39.21 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVA 274 (387)
|+|+|+++||||-++-.|| ..|+..-
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999 5566443
No 74
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=84.36 E-value=0.79 Score=40.40 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=23.4
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccc
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPI 278 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~PL 278 (387)
|+|+|.|++|||.+.-.|++ .+....+++.
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~ 34 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPNLKFSISA 34 (180)
T ss_pred EEEECCCCCCHHHHHHHHHccCccccccccc
Confidence 79999999999999999995 3434445443
No 75
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=84.24 E-value=0.32 Score=42.59 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMG 281 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~ 281 (387)
|+|.|-..||||=|+--||.+ |+|+|||
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-----g~~~v~E 29 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-----GYPVVPE 29 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-----T-EEE--
T ss_pred EEEECCCCCCHHHHHHHHHHc-----CCeEEee
Confidence 899999999999999999966 7778874
No 76
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=84.19 E-value=4.3 Score=36.30 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEcC--------------CHHHHHHHHHHHHHcCCCEeecchHHHHHHHH
Q 016579 144 VEQLMVIIKQAAKDG-AMLVYTLA--------------DPSMAESAKKACELWGIPSTDVLGPITEAIAS 198 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~-~iV~~Tlv--------------d~elr~~l~~~~~~~gi~~vDllgp~i~~le~ 198 (387)
.+.+.++++.+++.+ .+|+.|.. -..+.+.+++.|+++|++++|+..++...++.
T Consensus 93 ~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~~~~~~~~~~~ 162 (198)
T cd01821 93 KEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLIDLNAASRALYEA 162 (198)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEEecHHHHHHHHHH
Confidence 445566777776555 35555421 24668899999999999999999988776554
No 77
>PRK06526 transposase; Provisional
Probab=83.96 E-value=0.67 Score=44.94 Aligned_cols=50 Identities=26% Similarity=0.420 Sum_probs=38.0
Q ss_pred CCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016579 216 FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 216 ~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
..++...+....+.+|.-.+ -.++|+|.++||||=|+..|+ ++|++|.-+
T Consensus 79 ~~~~~~~~~~l~~~~fi~~~-----------~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 79 RSLKRDTIAHLGTLDFVTGK-----------ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CCcchHHHHHHhcCchhhcC-----------ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 34666778888888887321 248999999999999999887 468887553
No 78
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=83.75 E-value=3.4 Score=44.35 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=37.7
Q ss_pred hhhhhhhhCCCCCCCCC----CCcCcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016579 227 EAIEFTIKQDDGALPQN----LQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 227 eAIeFavkhDDG~~~~~----L~~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
.|=.||..=.-|....- =.-|||+|||-+.+|||-|-=-|.+.--|+||||.+
T Consensus 136 ~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfT 192 (500)
T PRK12296 136 KAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFT 192 (500)
T ss_pred CCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcc
Confidence 34445554444443221 123999999999999999988888666789999975
No 79
>PRK06217 hypothetical protein; Validated
Probab=83.30 E-value=0.83 Score=41.10 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.3
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVA 274 (387)
|+|+|.|+||||=++--||+ .|+.+-
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 89999999999999999994 466543
No 80
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=83.20 E-value=0.48 Score=38.58 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~G 270 (387)
|+|-|.++||||=++-||++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999773
No 81
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=82.88 E-value=0.97 Score=40.05 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
|+|+|.++||||=+|-.|| .+|+.+-+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 8999999999999999999 458877664
No 82
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=82.62 E-value=2.8 Score=41.78 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=36.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec---------cccCCCCCCccccccCCCcEEE
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV---------PIVMGVELPKSLFQVDPEKVFG 298 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~---------PLVp~v~lP~eLf~v~~~KI~G 298 (387)
|+|+|++.+|||=+++=|| +.|..+-|. ++.-.=+-|.++-.++ +-.++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~-hhlid 60 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIP-HHLID 60 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCcc-EEEEE
Confidence 7999999999999999999 557666666 5555656666664443 33555
No 83
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.61 E-value=0.96 Score=38.28 Aligned_cols=93 Identities=20% Similarity=0.218 Sum_probs=54.6
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCC
Q 016579 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSN 326 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~ 326 (387)
.|+|+|.++||||=+.-||| ..|+++--+.+-.+...- .|+ -+.++++ .. .-+ ..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~-dl~-------g~~~~~~--------~~---~~~---~~~~ 58 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEE-DLI-------GSYDPSN--------GQ---FEF---KDGP 58 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHH-HHH-------CEEET-T--------TT---TCE---EE-C
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccc-cce-------eeeeecc--------cc---ccc---cccc
Confidence 48999999999999999999 456666555554443322 221 1111110 00 000 0112
Q ss_pred CCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhcccc
Q 016579 327 YSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRKH 376 (387)
Q Consensus 327 YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r~~ 376 (387)
+..- +++. +|-+||==+++-+++-..++..++++..
T Consensus 59 l~~a-------------~~~~-~il~lDEin~a~~~v~~~L~~ll~~~~~ 94 (139)
T PF07728_consen 59 LVRA-------------MRKG-GILVLDEINRAPPEVLESLLSLLEERRI 94 (139)
T ss_dssp CCTT-------------HHEE-EEEEESSCGG--HHHHHTTHHHHSSSEE
T ss_pred cccc-------------ccce-eEEEECCcccCCHHHHHHHHHHHhhCcc
Confidence 2211 1153 7899999999999999999999987653
No 84
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=82.53 E-value=7.8 Score=34.05 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=21.3
Q ss_pred EEEEccCCCCCChhhHHhhhc----Cceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQK----GYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~----GyKVA 274 (387)
|+++|.|+||||-++-.|+.+ |+++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~ 31 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVY 31 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 689999999999999999943 65543
No 85
>PRK00300 gmk guanylate kinase; Provisional
Probab=82.09 E-value=0.8 Score=41.33 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+|+|.|+||||-|+-.|++.
T Consensus 8 i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 8 IVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 799999999999999999954
No 86
>PRK07261 topology modulation protein; Provisional
Probab=81.98 E-value=1 Score=40.59 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVA 274 (387)
|+++|.|++|||=++--|+. .|+.+-
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i 29 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVL 29 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeE
Confidence 78999999999999999994 455433
No 87
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=81.86 E-value=5.9 Score=38.14 Aligned_cols=86 Identities=19% Similarity=0.346 Sum_probs=59.1
Q ss_pred ccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hCCCCcEEe
Q 016579 276 VPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFA-QNPVWPVIE 354 (387)
Q Consensus 276 ~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~-k~~g~pvID 354 (387)
.++=+=..+|.-| +.|+-++=|+++|+.+. |+..+| ...|-..+--++=+..-.+|++ ..++|.++|
T Consensus 110 l~~dWc~~pd~gL--~KPDlvlfL~v~p~~~a-----~rggfG-----~Erye~v~fqekv~~~~q~l~r~e~~~~~~vD 177 (208)
T KOG3327|consen 110 LDLDWCKQPDVGL--PKPDLVLFLDVSPEDAA-----RRGGFG-----EERYETVAFQEKVLVFFQKLLRKEDLNWHVVD 177 (208)
T ss_pred CCcchhhCCccCC--CCCCeEEEEeCCHHHHH-----HhcCcc-----hhHHHHHHHHHHHHHHHHHHHhccCCCeEEEe
Confidence 3333333444555 45778999999999843 333333 3457666666666677777775 336899999
Q ss_pred CCCccHHHHHHHHHHHHhcc
Q 016579 355 VTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 355 VT~kSIEEtAa~Il~~~~~r 374 (387)
.| +|+|+.=+.|..+++.-
T Consensus 178 As-~sve~V~~~V~~i~e~~ 196 (208)
T KOG3327|consen 178 AS-KSVEKVHQQVRSLVENV 196 (208)
T ss_pred cC-ccHHHHHHHHHHHHHHh
Confidence 99 99999999998777653
No 88
>PLN02165 adenylate isopentenyltransferase
Probab=81.80 E-value=1.6 Score=44.66 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=49.3
Q ss_pred EEEEccCCCCCChhhHHhhhc-CceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHh--hcCCCCCCCC
Q 016579 249 IILSGVSRTGKTPLSIYLAQK-GYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARAR--SLGFRDEIRS 325 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~-GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk--~lGl~~~~~S 325 (387)
|+|+|.++||||=|++-||.. |+ ++|.- ..+ ++.+ |++|--.+-..-.+..+. .++.-.....
T Consensus 46 ivIiGPTGSGKStLA~~LA~~l~~-----eIIsa----Ds~-QvYk----gldIgTakpt~~er~gv~Hhli~~~~~~~~ 111 (334)
T PLN02165 46 VVIMGATGSGKSRLSVDLATRFPS-----EIINS----DKM-QVYD----GLKITTNQITIQDRRGVPHHLLGELNPDDG 111 (334)
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----ceecC----Chh-eeEC----CcccccCCCCHHHHcCCChhhhheeccccc
Confidence 999999999999999999954 54 22221 111 2222 333322221111111111 1222111123
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCcEE
Q 016579 326 NYSEMDYVREELEFAGRIFAQNPVWPVI 353 (387)
Q Consensus 326 ~YA~~e~I~~EL~~A~~lf~k~~g~pvI 353 (387)
.|+-.+-++.+..-.+++..+. +.||+
T Consensus 112 ~~sv~~F~~~a~~~I~~i~~~~-~~PI~ 138 (334)
T PLN02165 112 ELTASEFRSLASLSISEITSRQ-KLPIV 138 (334)
T ss_pred eeeHHHHHHHHHHHHHHHHHCC-CcEEE
Confidence 5766666667777777888886 77876
No 89
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=81.19 E-value=12 Score=35.68 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=78.2
Q ss_pred EEEEccCCCCCChhhHHhhh-c-CceeeeccccC----------------------------------------------
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-K-GYKVANVPIVM---------------------------------------------- 280 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~-GyKVAN~PLVp---------------------------------------------- 280 (387)
+|++||+++|||-++=.+.+ . ++|..||=.++
T Consensus 7 vvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~iivDt 86 (189)
T COG2019 7 VVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEIIVDT 86 (189)
T ss_pred EEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceEEec
Confidence 79999999999988877774 3 78889986543
Q ss_pred ----------CCCCCcccc-ccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH---HHhhh
Q 016579 281 ----------GVELPKSLF-QVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAG---RIFAQ 346 (387)
Q Consensus 281 ----------~v~lP~eLf-~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~---~lf~k 346 (387)
=-.||..++ +++++.+|=|.-||+.+..- |++. ....-.|-+.|.|++=.+.++ --+.-
T Consensus 87 H~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~R---R~~D----~~r~Rd~es~e~i~eHqe~nR~aA~a~A~ 159 (189)
T COG2019 87 HATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILER---RLRD----SRRDRDVESVEEIREHQEMNRAAAMAYAI 159 (189)
T ss_pred cceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHH---Hhcc----cccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 023566433 67788899999999887763 3321 012346888888765443222 12233
Q ss_pred CCCCcEEeCCCc--cHHHHHHHHHHHHh
Q 016579 347 NPVWPVIEVTGK--AIEETAAVVLRLYH 372 (387)
Q Consensus 347 ~~g~pvIDVT~k--SIEEtAa~Il~~~~ 372 (387)
..|.+|-=|.+. --||.|..|++++.
T Consensus 160 ~~gatVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 160 LLGATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred HhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 357777666666 78888888888774
No 90
>PRK00023 cmk cytidylate kinase; Provisional
Probab=81.06 E-value=0.75 Score=43.50 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=56.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeeccc----------cCCCCCCcc--cccc--CCCcEEE--------EecChhH
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANVPI----------VMGVELPKS--LFQV--DPEKVFG--------LTINPLV 305 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~PL----------Vp~v~lP~e--Lf~v--~~~KI~G--------LTIdPer 305 (387)
|.|.|.++||||.++-.|| ..|+..-+-=. .-++++-.. +-+. .-...++ +..+-+.
T Consensus 7 i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 86 (225)
T PRK00023 7 IAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNGEDV 86 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECCcch
Confidence 7899999999999999999 67865543222 113332211 1010 0001111 1112222
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeC
Q 016579 306 LQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEV 355 (387)
Q Consensus 306 L~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDV 355 (387)
-.+||.+..- . .-|.++....++++|....+-+.+. +..||+=
T Consensus 87 ~~~lr~~~i~-~-----~~s~~a~~~~ir~~l~~~q~~ia~~-~~~Vi~G 129 (225)
T PRK00023 87 TDEIRTEEVG-N-----AASKVAAIPEVREALVERQRAFARE-PGLVMDG 129 (225)
T ss_pred HHhhChHHHH-H-----HHHHHcCCHHHHHHHHHHHHHHhhC-CCEEEEe
Confidence 3357776651 1 2356888888999998877777765 4556653
No 91
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=81.02 E-value=8.7 Score=33.85 Aligned_cols=143 Identities=23% Similarity=0.214 Sum_probs=84.4
Q ss_pred HHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhh--hhhCCCCCCCCCCCcCcEEEE
Q 016579 175 KKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEF--TIKQDDGALPQNLQKADIILS 252 (387)
Q Consensus 175 ~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeF--avkhDDG~~~~~L~~ADIVLv 252 (387)
+..++.+|.+++|+ +-+ +++.+|.... -.....++++|++.|+--. .+... -=||-.
T Consensus 10 ~~lA~~L~~~fiD~-D~~---i~~~~g~si~-------~i~~~~G~~~fr~~E~~~l~~l~~~~----------~~VIa~ 68 (158)
T PF01202_consen 10 KLLAKRLGRPFIDL-DDE---IEERTGMSIS-------EIFAEEGEEAFRELESEALRELLKEN----------NCVIAC 68 (158)
T ss_dssp HHHHHHHTSEEEEH-HHH---HHHHHTSHHH-------HHHHHHHHHHHHHHHHHHHHHHHCSS----------SEEEEE
T ss_pred HHHHHHhCCCcccc-CHH---HHHHhCCcHH-------HHHHcCChHHHHHHHHHHHHHHhccC----------cEEEeC
Confidence 45677889999996 554 5788886542 1223345789998875322 22211 224445
Q ss_pred ccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHH
Q 016579 253 GVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDY 332 (387)
Q Consensus 253 GVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~ 332 (387)
|-. +.-+| .++ +-| + ....+|-|..+++.|.+ |+...+. ...+.....
T Consensus 69 GGG-~~~~~-----~~~----------------~~L-~-~~g~vI~L~~~~~~l~~----Rl~~~~~----Rp~l~~~~~ 116 (158)
T PF01202_consen 69 GGG-IVLKE-----ENR----------------ELL-K-ENGLVIYLDADPEELAE----RLRARDN----RPLLKGKME 116 (158)
T ss_dssp -TT-GGGSH-----HHH----------------HHH-H-HHSEEEEEE--HHHHHH----HHHHHCT----SGGTCSHHH
T ss_pred CCC-CcCcH-----HHH----------------HHH-H-hCCEEEEEeCCHHHHHH----HHhCCCC----CCCCCCCCh
Confidence 422 11111 111 111 1 45779999999999876 3332222 123444433
Q ss_pred ---HHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016579 333 ---VREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 333 ---I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
+.+-+..=..+|++. ..-+||++.++.||+|+.|++.+
T Consensus 117 ~~~~~~~~~~R~~~Y~~~-a~~~v~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 117 HEEILELLFEREPLYEQA-ADIVVDTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-SSEEEETSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CeEEEeCCCCCHHHHHHHHHHHh
Confidence 444444456788885 89999999999999999999876
No 92
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=81.00 E-value=6.5 Score=37.01 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=54.1
Q ss_pred CccEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016579 96 EGKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (387)
Q Consensus 96 ~~~~IfiVSDsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l 174 (387)
-.+++|+-.+..|.. |+.+++.+...+|++ +++.+.- .+ +.+.+.++++. --+||.++-+++.|..+
T Consensus 61 L~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~------~i~~~~~-~i-~~~~~~~~~~~----~DvVi~~~d~~~~r~~l 128 (228)
T cd00757 61 LQRQILHTEADVGQPKAEAAAERLRAINPDV------EIEAYNE-RL-DAENAEELIAG----YDLVLDCTDNFATRYLI 128 (228)
T ss_pred cccccccChhhCCChHHHHHHHHHHHhCCCC------EEEEecc-ee-CHHHHHHHHhC----CCEEEEcCCCHHHHHHH
Confidence 346666666566754 555566555566753 2332221 23 44555555533 24899999999999999
Q ss_pred HHHHHHcCCCEeec
Q 016579 175 KKACELWGIPSTDV 188 (387)
Q Consensus 175 ~~~~~~~gi~~vDl 188 (387)
.++|.++++|+|+.
T Consensus 129 ~~~~~~~~ip~i~~ 142 (228)
T cd00757 129 NDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999996
No 93
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=81.00 E-value=1.7 Score=43.55 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.1
Q ss_pred cEEEEccCCCCCChhhHHhhhc-Ccee
Q 016579 248 DIILSGVSRTGKTPLSIYLAQK-GYKV 273 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~-GyKV 273 (387)
=|+|+|.|+||||=|+-.||++ |+.+
T Consensus 164 ~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 164 TVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 4899999999999999999954 6544
No 94
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=80.52 E-value=1.3 Score=35.61 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.6
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016579 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
-++|.|.++||||-+...+++.
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999854
No 95
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=80.30 E-value=8.1 Score=41.75 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=22.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
||++|.++||||=++--++ ..||.+.|-
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~g~~~vn~ 400 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPAGYKHVNA 400 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEECc
Confidence 8899999999999987666 567765543
No 96
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=80.22 E-value=1.3 Score=37.22 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.5
Q ss_pred EEEEccCCCCCChhhHHhh-hcCcee
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKV 273 (387)
|++.|.++||||-++--|| +.|+.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~ 27 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPY 27 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce
Confidence 7899999999999999999 556544
No 97
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=79.73 E-value=1.1 Score=39.48 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=21.6
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
|.++|.+.||||=++-+|. .+||||+
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 6789999999999999986 5799998
No 98
>PRK08356 hypothetical protein; Provisional
Probab=79.71 E-value=1.2 Score=40.59 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyK 272 (387)
|+|.|.+++|||=+|-||+.+|+.
T Consensus 8 i~~~G~~gsGK~t~a~~l~~~g~~ 31 (195)
T PRK08356 8 VGVVGKIAAGKTTVAKFFEEKGFC 31 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCc
Confidence 789999999999999999877774
No 99
>PRK00023 cmk cytidylate kinase; Provisional
Probab=79.56 E-value=8.1 Score=36.56 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=43.5
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH---H--h---hhCCCCcEEeCCCccHHHHHHH
Q 016579 295 KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGR---I--F---AQNPVWPVIEVTGKAIEETAAV 366 (387)
Q Consensus 295 KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~---l--f---~k~~g~pvIDVT~kSIEEtAa~ 366 (387)
+|| |+.+++.-.+.|.+++...|. -.+.+.+++++..=.+ - + ....+.-+||+|..++||+...
T Consensus 143 ~if-l~a~~e~R~~Rr~~~~~~~g~-------~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~ 214 (225)
T PRK00023 143 KIF-LTASAEERAERRYKELQAKGI-------SVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEK 214 (225)
T ss_pred EEE-EECCHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHH
Confidence 444 999988645555555543332 1334445544433222 1 1 1111137899999999999999
Q ss_pred HHHHHhcc
Q 016579 367 VLRLYHDR 374 (387)
Q Consensus 367 Il~~~~~r 374 (387)
|++++..+
T Consensus 215 I~~~i~~~ 222 (225)
T PRK00023 215 ILALVEEK 222 (225)
T ss_pred HHHHHHHH
Confidence 99999754
No 100
>PRK00279 adk adenylate kinase; Reviewed
Probab=79.54 E-value=1.4 Score=40.70 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=25.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
|+++|.+++|||-+|-.|| ++|+..-+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 8999999999999999999 678887775
No 101
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=79.45 E-value=12 Score=32.23 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=49.7
Q ss_pred cEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016579 98 KSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (387)
Q Consensus 98 ~~IfiVSDsTGe-TAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (387)
++.|+-.+..|. -|+.+++.+..-+|++ +++.+.- ++.+. ...+. -..-.+||.+..+.+.+..+.+
T Consensus 41 r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v------~i~~~~~-~~~~~-~~~~~----~~~~diVi~~~d~~~~~~~l~~ 108 (143)
T cd01483 41 RQFLARQADIGKPKAEVAARRLNELNPGV------NVTAVPE-GISED-NLDDF----LDGVDLVIDAIDNIAVRRALNR 108 (143)
T ss_pred ccccCChhHCCChHHHHHHHHHHHHCCCc------EEEEEee-ecChh-hHHHH----hcCCCEEEECCCCHHHHHHHHH
Confidence 455553344553 4555555555556653 2332221 22222 22222 2344699999999999999999
Q ss_pred HHHHcCCCEeecch
Q 016579 177 ACELWGIPSTDVLG 190 (387)
Q Consensus 177 ~~~~~gi~~vDllg 190 (387)
+|+++++|+++.-.
T Consensus 109 ~~~~~~i~~i~~~~ 122 (143)
T cd01483 109 ACKELGIPVIDAGG 122 (143)
T ss_pred HHHHcCCCEEEEcC
Confidence 99999999999643
No 102
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=79.05 E-value=14 Score=34.17 Aligned_cols=101 Identities=12% Similarity=0.144 Sum_probs=68.2
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG-AMLVYTLADPSMAES 173 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~-~iV~~Tlvd~elr~~ 173 (387)
..+..||++ -++=++++.+++.+..+||++ ++.-+ .+|.+. ++-+++++++.+.+ .||+--|-.|.=-..
T Consensus 46 ~~~~~vfll-G~~~~v~~~~~~~l~~~yP~l------~i~g~-~g~f~~-~~~~~i~~~I~~s~~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 46 KEKLPIFLY-GGKPDVLQQLKVKLIKEYPKL------KIVGA-FGPLEP-EERKAALAKIARSGAGIVFVGLGCPKQEIW 116 (177)
T ss_pred HcCCeEEEE-CCCHHHHHHHHHHHHHHCCCC------EEEEE-CCCCCh-HHHHHHHHHHHHcCCCEEEEEcCCcHhHHH
Confidence 455799999 455568889999999999985 34344 677754 44567888886666 499999988876666
Q ss_pred HHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016579 174 AKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 174 l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+.+.....+..++=-.|-.++.++......|
T Consensus 117 ~~~~~~~~~~~v~~gvGg~fd~~aG~~~rAP 147 (177)
T TIGR00696 117 MRNHRHLKPDAVMIGVGGSFDVFSGLVKRAP 147 (177)
T ss_pred HHHhHHhCCCcEEEEeceeeeecccCcCcCC
Confidence 6666555544443335666666664443333
No 103
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=79.01 E-value=1.4 Score=46.37 Aligned_cols=30 Identities=43% Similarity=0.588 Sum_probs=24.0
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016579 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
.=|+++|+.++|||.++..|| .+|++|+=+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 458899999999999999888 346666543
No 104
>PF08283 Gemini_AL1_M: Geminivirus rep protein central domain; InterPro: IPR022692 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. This is the central region of the geminivirus rep proteins []. It is found C-terminal to PF00799 from PFAM and is thought to be responsible for oligomerisation.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Probab=78.99 E-value=1.1 Score=38.95 Aligned_cols=17 Identities=53% Similarity=0.786 Sum_probs=13.8
Q ss_pred CCcCcEEEEccCCCCCC
Q 016579 244 LQKADIILSGVSRTGKT 260 (387)
Q Consensus 244 L~~ADIVLvGVSRTsKT 260 (387)
+.-=-||+-|-||||||
T Consensus 88 ~rp~SivieG~sRTGKT 104 (106)
T PF08283_consen 88 LRPISIVIEGDSRTGKT 104 (106)
T ss_pred CCCCceeEecCCccCcC
Confidence 33335999999999999
No 105
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=78.65 E-value=2.8 Score=34.52 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=61.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhH-HHHHHHHHHhhcCCCCCCCCCC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLV-LQSIRKARARSLGFRDEIRSNY 327 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPer-L~~IR~eRlk~lGl~~~~~S~Y 327 (387)
++|.|.+++|||=+.-++++.-...+...- +..++.++..... ...+.++-+..+|... ...
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~~ 69 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQLNAEAEIKN--------------HPDVIYVNCPSSRTPRDFAQEILEALGLPL---KSR 69 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--------------CEEEEEEEHHHHSSHHHHHHHHHHHHT-SS---SST
T ss_pred cEEEcCCCCCHHHHHHHHHHHhHHhhhccC--------------CCcEEEEEeCCCCCHHHHHHHHHHHhCccc---ccc
Confidence 789999999999999999954211111110 4456677777766 7788889999999853 224
Q ss_pred CCHHHHHHHHHHHHHHhhhCC-CCcEEeCCCcc-HHHHHHHHHHHHh
Q 016579 328 SEMDYVREELEFAGRIFAQNP-VWPVIEVTGKA-IEETAAVVLRLYH 372 (387)
Q Consensus 328 A~~e~I~~EL~~A~~lf~k~~-g~pvIDVT~kS-IEEtAa~Il~~~~ 372 (387)
.+.+.+.+.+. +.+.++. .+-|||=-+.- =.+....|..+++
T Consensus 70 ~~~~~l~~~~~---~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 70 QTSDELRSLLI---DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN 113 (131)
T ss_dssp S-HHHHHHHHH---HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred CCHHHHHHHHH---HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh
Confidence 56666654433 3344431 15677755552 2555555544444
No 106
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=78.48 E-value=8.5 Score=40.06 Aligned_cols=53 Identities=30% Similarity=0.386 Sum_probs=33.8
Q ss_pred EEccCCCCCChhhHHhh-h-------cCceeeeccccCCCCCCccccccCCCc--EEEEecChhHHHHHHHHHHhhcCCC
Q 016579 251 LSGVSRTGKTPLSIYLA-Q-------KGYKVANVPIVMGVELPKSLFQVDPEK--VFGLTINPLVLQSIRKARARSLGFR 320 (387)
Q Consensus 251 LvGVSRTsKTPlSmYLA-~-------~GyKVAN~PLVp~v~lP~eLf~v~~~K--I~GLTIdPerL~~IR~eRlk~lGl~ 320 (387)
|-|.|++|||=+++||. . +||+|. .|+| .+-|..+++.+.+-++.=+..|||+
T Consensus 94 ~~gdsg~GKttllL~l~IalaaG~~lfG~~v~-----------------epGkvlyvslEl~re~~L~Rl~~v~a~mgLs 156 (402)
T COG3598 94 LYGDSGVGKTTLLLYLCIALAAGKNLFGNKVK-----------------EPGKVLYVSLELYREDILERLEPVRARMGLS 156 (402)
T ss_pred EecCCcccHhHHHHHHHHHHHhhHHHhccccc-----------------CCCeEEEEEeccChHHHHHHHHHHHHHcCCC
Confidence 44999999999999986 2 355443 3343 3455556665555555555667765
No 107
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=78.47 E-value=3.6 Score=37.98 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=19.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
.-++|.|.++||||=+|+-++..|
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNG 43 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHh
Confidence 347788999999999999766443
No 108
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=78.22 E-value=1.5 Score=36.39 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.8
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYK 272 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyK 272 (387)
||+|+|.+.+|||-|.-.|++.++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~ 25 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKL 25 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCce
Confidence 7999999999999999999965443
No 109
>PRK08328 hypothetical protein; Provisional
Probab=78.15 E-value=5.9 Score=37.70 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=52.5
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccC-CCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016579 97 GKSIYMVSDGTGW-TAEHAVNAALGQF-EHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (387)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaL~QF-~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l 174 (387)
.+++++--+..|. ....+++..+.++ |++ .+ ..++.--+.+.+.+++++ --+||.++-+.+.|..+
T Consensus 68 ~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v------~v--~~~~~~~~~~~~~~~l~~----~D~Vid~~d~~~~r~~l 135 (231)
T PRK08328 68 NRQILHWEEDLGKNPKPLSAKWKLERFNSDI------KI--ETFVGRLSEENIDEVLKG----VDVIVDCLDNFETRYLL 135 (231)
T ss_pred ccccccChhhcCchHHHHHHHHHHHHhCCCC------EE--EEEeccCCHHHHHHHHhc----CCEEEECCCCHHHHHHH
Confidence 3566655555776 3555555555555 543 33 333322255666665543 35999999999999999
Q ss_pred HHHHHHcCCCEee
Q 016579 175 KKACELWGIPSTD 187 (387)
Q Consensus 175 ~~~~~~~gi~~vD 187 (387)
.++|.++|+|+|.
T Consensus 136 ~~~~~~~~ip~i~ 148 (231)
T PRK08328 136 DDYAHKKGIPLVH 148 (231)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999987
No 110
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=77.81 E-value=5.4 Score=35.37 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCEEEEEc--CC-----------HHHHHHHHHHHHHcCCCEeecchHHHH
Q 016579 147 LMVIIKQAAKDGAMLVYTL--AD-----------PSMAESAKKACELWGIPSTDVLGPITE 194 (387)
Q Consensus 147 l~~ii~~a~~~~~iV~~Tl--vd-----------~elr~~l~~~~~~~gi~~vDllgp~i~ 194 (387)
+..++..++..-.+++.|+ ++ .++.+.+++.|++++++++|++.++..
T Consensus 101 ~~~ii~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vd~~~~~~~ 161 (193)
T cd01835 101 LNQLLEEAKRLVPVLVVGPTPVDEAKMPYSNRRIARLETAFAEVCLRRDVPFLDTFTPLLN 161 (193)
T ss_pred HHHHHHHHhcCCcEEEEeCCCccccccchhhHHHHHHHHHHHHHHHHcCCCeEeCccchhc
Confidence 4444555544445777664 22 257788999999999999999987765
No 111
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=77.79 E-value=3.3 Score=41.85 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=30.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016579 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
-|||.|||-+.+|||=|---|.+.--+|||||+.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfT 191 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT 191 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCc
Confidence 3999999999999999988887666899999975
No 112
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=77.07 E-value=8.4 Score=34.35 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=39.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hCCCCcEEeCCCccHHHHHHHH
Q 016579 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFA-QNPVWPVIEVTGKAIEETAAVV 367 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~-k~~g~pvIDVT~kSIEEtAa~I 367 (387)
.|..+|-|+++|+...+--..| +.. ......+.+..++=-+...++++ .. +|-+||.+.. +||+...|
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r----~~~--~~~~~~~~~~~~~~~~~y~~l~~~~~-~~~iid~~~~-~e~v~~~I 186 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKR----GEK--DDEEEEDLEYLRRVREAYLELAKDPN-NWVIIDASRS-IEEVHEQI 186 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHT----SST--TTTTTHHHHHHHHHHHHHHHHHHTTT-TEEEEETTS--HHHHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHcC----Ccc--chHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEECCCC-HHHHHhhC
Confidence 5678999999998766632222 221 01122333333333334455664 54 8999997655 99998877
No 113
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=76.96 E-value=7.1 Score=35.70 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=21.5
Q ss_pred CCCCcCcEE-EEccCCCCCChhhHHhhh
Q 016579 242 QNLQKADII-LSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 242 ~~L~~ADIV-LvGVSRTsKTPlSmYLA~ 268 (387)
.|+..-.++ |.|.++||||=+++.+|.
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~ 41 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAV 41 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 355555554 789999999999999994
No 114
>PRK00889 adenylylsulfate kinase; Provisional
Probab=76.90 E-value=17 Score=32.20 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|+|+|.+++|||-++-.||.
T Consensus 7 i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 7 VWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999884
No 115
>PRK14531 adenylate kinase; Provisional
Probab=76.24 E-value=1.9 Score=38.84 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=23.0
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCcee
Q 016579 248 DIILSGVSRTGKTPLSIYLA-QKGYKV 273 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKV 273 (387)
-|+++|.++||||-+|--|| .+|+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~ 30 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRH 30 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 49999999999999999999 567754
No 116
>PRK12338 hypothetical protein; Provisional
Probab=76.17 E-value=16 Score=37.11 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=25.9
Q ss_pred HHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhccc
Q 016579 339 FAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHDRK 375 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~r~ 375 (387)
|--+.-+++ ++|+| ++.++++|.+.|++.+.+..
T Consensus 173 ~l~~~A~e~-~VpvI--~N~did~Tv~~ile~I~e~s 206 (319)
T PRK12338 173 HLVEQAREH-NVPVI--KNDDIDCTVKKMLSYIREVC 206 (319)
T ss_pred HHHHhHhhC-CCcee--CCCcHHHHHHHHHHHHHhhe
Confidence 333344554 89987 89999999999999997754
No 117
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.16 E-value=6.9 Score=42.19 Aligned_cols=87 Identities=23% Similarity=0.240 Sum_probs=73.4
Q ss_pred EeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcC
Q 016579 103 VSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWG 182 (387)
Q Consensus 103 VSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~g 182 (387)
|=+-.|.|=....||.|-|=|++ ...=-|||.|.++-++ +|.-.|.+||.||---+....+.+.+ ++|
T Consensus 308 VN~k~gltfa~~LRa~LRqDPDv----------ImVGEIRD~ETAeiav-qAalTGHLVlSTlHtnda~~ai~RL~-~mG 375 (500)
T COG2804 308 VNPKIGLTFARALRAILRQDPDV----------IMVGEIRDLETAEIAV-QAALTGHLVLSTLHTNDAPGAITRLL-EMG 375 (500)
T ss_pred cccccCCCHHHHHHHHhccCCCe----------EEEeccCCHHHHHHHH-HHHhcCCeEeeecccCchHHHHHHHH-HcC
Confidence 45578999999999999999974 3456699999988666 45678899999999999999998886 699
Q ss_pred CCEeecchHHHHHHHHHhC
Q 016579 183 IPSTDVLGPITEAIASHLG 201 (387)
Q Consensus 183 i~~vDllgp~i~~le~~lG 201 (387)
|.-..+-.++...+++.|=
T Consensus 376 v~~~~l~s~l~gViaQRLv 394 (500)
T COG2804 376 VEPYLLASSLLGVIAQRLV 394 (500)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999998888887774
No 118
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=75.62 E-value=13 Score=30.33 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=42.2
Q ss_pred HHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016579 149 VIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 149 ~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
++++.++... -+|+..=+++.+++.+...|++++||++.+. -...|....|.+.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~--s~~eLG~a~G~~~ 73 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD--SMKKLGKACGIEV 73 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC--CHHHHHHHHCCCc
Confidence 3444444444 3777888889999999999999999999987 4488888888765
No 119
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=75.57 E-value=2 Score=36.10 Aligned_cols=26 Identities=42% Similarity=0.533 Sum_probs=22.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVA 274 (387)
|+++|+++||||=++-.|+ ..|+.+-
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 7899999999999999999 6674443
No 120
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=75.32 E-value=12 Score=36.02 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=52.3
Q ss_pred ccEEEEEeCChH-HHHHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016579 97 GKSIYMVSDGTG-WTAEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (387)
Q Consensus 97 ~~~IfiVSDsTG-eTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p-~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l 174 (387)
.+++|+--+..| --|+.+++.+...+|++ ++..++ ++ +.+.+.+++++ --+||.+.-+++.|..+
T Consensus 65 ~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v--------~i~~~~~~i-~~~~~~~~~~~----~DlVvd~~D~~~~r~~l 131 (240)
T TIGR02355 65 QRQVLHSDANIGQPKVESAKDALTQINPHI--------AINPINAKL-DDAELAALIAE----HDIVVDCTDNVEVRNQL 131 (240)
T ss_pred ccceeeeHhhCCCcHHHHHHHHHHHHCCCc--------EEEEEeccC-CHHHHHHHhhc----CCEEEEcCCCHHHHHHH
Confidence 456665534556 34555666666666763 333333 33 34455555543 24999999999999999
Q ss_pred HHHHHHcCCCEee
Q 016579 175 KKACELWGIPSTD 187 (387)
Q Consensus 175 ~~~~~~~gi~~vD 187 (387)
.+.|.++++|+|.
T Consensus 132 n~~~~~~~ip~v~ 144 (240)
T TIGR02355 132 NRQCFAAKVPLVS 144 (240)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999997
No 121
>PLN02924 thymidylate kinase
Probab=75.11 E-value=10 Score=35.95 Aligned_cols=74 Identities=20% Similarity=0.464 Sum_probs=46.7
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016579 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
.|..+|-|+++|+...+ |.+. + +..|.+.+. .+-+..+..-+... .|-+||-+ +++||+...|.+.+
T Consensus 135 ~PDlvi~Ld~~~~~a~~----R~~~-~-----~~~~E~~~~-~~rv~~~Y~~la~~-~~~vIDa~-~sieeV~~~I~~~I 201 (220)
T PLN02924 135 APDLVLYLDISPEEAAE----RGGY-G-----GERYEKLEF-QKKVAKRFQTLRDS-SWKIIDAS-QSIEEVEKKIREVV 201 (220)
T ss_pred CCCEEEEEeCCHHHHHH----Hhcc-C-----ccccccHHH-HHHHHHHHHHHhhc-CEEEECCC-CCHHHHHHHHHHHH
Confidence 36779999999998876 3211 1 123433322 22233333223343 79999965 99999999999999
Q ss_pred hcccccC
Q 016579 372 HDRKHKC 378 (387)
Q Consensus 372 ~~r~~~~ 378 (387)
.+...+|
T Consensus 202 ~~~l~~~ 208 (220)
T PLN02924 202 LDTVQRC 208 (220)
T ss_pred HHHHHhc
Confidence 7765444
No 122
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=75.09 E-value=2 Score=37.84 Aligned_cols=29 Identities=45% Similarity=0.557 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~P 277 (387)
++++|..++|||.++.=|| +.|+||+=+-
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6899999999999977666 4588876544
No 123
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=74.99 E-value=2 Score=38.84 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|.|+|.|+||||-++-+|+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999953
No 124
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=74.26 E-value=12 Score=36.00 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=51.3
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Q 016579 97 GKSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAK 175 (387)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~ 175 (387)
.+++++=-+..|. =|+.+++.+....|++ ++..++..=+.+.+.+++.. --+||-+.-+.+.|..+.
T Consensus 73 ~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v--------~i~~~~~~i~~~~~~~~~~~----~DiVi~~~D~~~~r~~ln 140 (245)
T PRK05690 73 QRQVLHDDATIGQPKVESARAALARINPHI--------AIETINARLDDDELAALIAG----HDLVLDCTDNVATRNQLN 140 (245)
T ss_pred hhhhcCChhhCCChHHHHHHHHHHHHCCCC--------EEEEEeccCCHHHHHHHHhc----CCEEEecCCCHHHHHHHH
Confidence 3555553444563 4555555555566653 33333322245555555543 248999999999999999
Q ss_pred HHHHHcCCCEee
Q 016579 176 KACELWGIPSTD 187 (387)
Q Consensus 176 ~~~~~~gi~~vD 187 (387)
++|.++++|+|.
T Consensus 141 ~~~~~~~ip~v~ 152 (245)
T PRK05690 141 RACFAAKKPLVS 152 (245)
T ss_pred HHHHHhCCEEEE
Confidence 999999999997
No 125
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=74.19 E-value=19 Score=32.76 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=69.1
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG-AMLVYTLADPSMAES 173 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~-~iV~~Tlvd~elr~~ 173 (387)
.++..||++-.. =++++.+++.+..+||++ .+.-...++.+.. ...++++.+.+.+ -+|+-.|-.|.=-..
T Consensus 44 ~~~~~v~llG~~-~~~~~~~~~~l~~~yp~l------~i~g~~~g~~~~~-~~~~i~~~I~~~~pdiv~vglG~PkQE~~ 115 (171)
T cd06533 44 QKGLRVFLLGAK-PEVLEKAAERLRARYPGL------KIVGYHHGYFGPE-EEEEIIERINASGADILFVGLGAPKQELW 115 (171)
T ss_pred HcCCeEEEECCC-HHHHHHHHHHHHHHCCCc------EEEEecCCCCChh-hHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 456899999444 445666667788999985 3444456666544 3455888887666 499999998877777
Q ss_pred HHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016579 174 AKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 174 l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+.+.....+..++=-+|-.++.++......|
T Consensus 116 ~~~~~~~l~~~v~~~vG~~~d~~aG~~~raP 146 (171)
T cd06533 116 IARHKDRLPVPVAIGVGGSFDFLAGTVKRAP 146 (171)
T ss_pred HHHHHHHCCCCEEEEeceeeEeccCCcccCc
Confidence 7766666666666666777777665544444
No 126
>PRK01184 hypothetical protein; Provisional
Probab=74.15 E-value=2.1 Score=38.09 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=22.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN 275 (387)
|+|+|.++||||=++-.+.++|+.+..
T Consensus 4 i~l~G~~GsGKsT~a~~~~~~g~~~i~ 30 (184)
T PRK01184 4 IGVVGMPGSGKGEFSKIAREMGIPVVV 30 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCcEEE
Confidence 789999999999999865588886654
No 127
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=73.85 E-value=14 Score=34.44 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecc
Q 016579 144 VEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVL 189 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~gi~~vDll 189 (387)
.+.+.+.+++ --+||.+.-+.+.|..+.+.|.++++|+|+.-
T Consensus 102 ~~~~~~~~~~----~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 102 AENLELLINN----VDLVLDCTDNFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred HHHHHHHHhC----CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 4445554432 24899999999999999999999999999954
No 128
>PRK08118 topology modulation protein; Reviewed
Probab=73.79 E-value=2.3 Score=38.32 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChhhHHhh-hcCcee
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKV 273 (387)
|+++|.+++|||=++--|+ ..|+.+
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~ 29 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPV 29 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 8999999999999999999 456553
No 129
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=73.66 E-value=8.9 Score=40.03 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=51.6
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHH---HHHHHhhcCCCCCCC
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSI---RKARARSLGFRDEIR 324 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~I---R~eRlk~lGl~~~~~ 324 (387)
=|+++|++++|||=|+.-||..-.. .-...+|.=++.|+.|...+ +. -.+.+|++- .
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~-----------------~~~g~~V~li~~D~~r~~a~eqL~~-~a~~~~vp~--~ 282 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYAL-----------------LYGKKKVALITLDTYRIGAVEQLKT-YAKIMGIPV--E 282 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-----------------hcCCCeEEEEECCccHHHHHHHHHH-HHHHhCCce--E
Confidence 5899999999999999999854210 01235666678888765432 22 123356542 1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHH
Q 016579 325 SNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIE 361 (387)
Q Consensus 325 S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIE 361 (387)
..| +.+.+...|+. +... .+-+||+-+++-.
T Consensus 283 ~~~-~~~~l~~~l~~----~~~~-DlVlIDt~G~~~~ 313 (424)
T PRK05703 283 VVY-DPKELAKALEQ----LRDC-DVILIDTAGRSQR 313 (424)
T ss_pred ccC-CHHhHHHHHHH----hCCC-CEEEEeCCCCCCC
Confidence 112 23344444433 3343 6789998877644
No 130
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=73.59 E-value=6.1 Score=36.89 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=27.0
Q ss_pred HHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016579 222 YFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 222 YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
+-+-+.-++|++..-.| =++|+|.+++|||-+...+++
T Consensus 28 ~~~~~~~l~~~~~~~~~---------~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 28 HKRAMAYLEYGLSQREG---------FILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HHHHHHHHHHHHhcCCC---------EEEEEcCCCCCHHHHHHHHHH
Confidence 34445556666653221 289999999999999999984
No 131
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=73.56 E-value=2.6 Score=38.34 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=22.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyK 272 (387)
|++.|.|++|||=+++.|..+|++
T Consensus 17 vLi~G~sG~GKStlal~L~~~g~~ 40 (149)
T cd01918 17 VLITGPSGIGKSELALELIKRGHR 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCe
Confidence 899999999999999999999854
No 132
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=73.48 E-value=2.5 Score=38.72 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=24.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
|.|.|.++||||=++-||+++|+.+-
T Consensus 5 i~ltG~~gsGKst~~~~l~~~g~~~i 30 (194)
T PRK00081 5 IGLTGGIGSGKSTVANLFAELGAPVI 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCEEE
Confidence 78999999999999999999999874
No 133
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=73.08 E-value=2.7 Score=32.37 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.1
Q ss_pred EEEEccCCCCCChhhHHhhhc--Cceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQK--GYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~--GyKVA 274 (387)
|++.|.+++|||=++-.|+++ |+++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~ 29 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVV 29 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEE
Confidence 678999999999999999976 55544
No 134
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=73.07 E-value=2.1 Score=33.64 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
++|+|.++||||=+..-||+.
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999943
No 135
>PLN02748 tRNA dimethylallyltransferase
Probab=72.21 E-value=2.4 Score=45.09 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=23.2
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN 275 (387)
|+|+|+++||||=|++-|| ++|+.+-|
T Consensus 25 i~i~GptgsGKs~la~~la~~~~~eii~ 52 (468)
T PLN02748 25 VVVMGPTGSGKSKLAVDLASHFPVEIIN 52 (468)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCeeEEc
Confidence 8999999999999999999 55655554
No 136
>PRK13974 thymidylate kinase; Provisional
Probab=72.21 E-value=20 Score=33.30 Aligned_cols=72 Identities=21% Similarity=0.168 Sum_probs=46.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016579 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 372 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~ 372 (387)
+..+|-|+++|+.+.+-+..|- + +.-........+.+..+...|.+.-.|-+||.+ +++||+...|.+.+.
T Consensus 135 pd~~i~ld~~~~~~~~R~~~R~------d--D~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~-~~~eeV~~~I~~~l~ 205 (212)
T PRK13974 135 PDLTFFLEISVEESIRRRKNRK------P--DRIEAEGIEFLERVAEGFALIAEERNWKVISAD-QSIETISNEIKETLL 205 (212)
T ss_pred CCEEEEEeCCHHHHHHHHHhcc------c--CchhhhhHHHHHHHHHHHHHHHhcCCEEEEeCC-CCHHHHHHHHHHHHH
Confidence 5669999999999877544441 1 111111223344455555555543367889975 789999999999887
Q ss_pred c
Q 016579 373 D 373 (387)
Q Consensus 373 ~ 373 (387)
+
T Consensus 206 ~ 206 (212)
T PRK13974 206 N 206 (212)
T ss_pred H
Confidence 5
No 137
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=72.01 E-value=27 Score=32.17 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=22.3
Q ss_pred CCCcCcE-EEEccCCCCCChhhHHhhhcCc
Q 016579 243 NLQKADI-ILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 243 ~L~~ADI-VLvGVSRTsKTPlSmYLA~~Gy 271 (387)
||..-++ +|.|.+++|||=+++.+|..+.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~ 38 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIA 38 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6666665 4578999999999999985433
No 138
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=71.87 E-value=2.8 Score=37.70 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.7
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~ 276 (387)
|.|.|.++||||=++-+|+++|+.|-+.
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKELGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEec
Confidence 6899999999999999999988877554
No 139
>PRK08939 primosomal protein DnaI; Reviewed
Probab=71.85 E-value=3.6 Score=41.03 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=33.7
Q ss_pred hhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceee--ecc
Q 016579 227 EAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVA--NVP 277 (387)
Q Consensus 227 eAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA----~~GyKVA--N~P 277 (387)
.|.+|+-++..|... --++|.|.++||||=|+.-|| ++|++|. ++|
T Consensus 142 ~~~~fi~~~~~~~~~-----~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 142 AALDFLEAYPPGEKV-----KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred HHHHHHHHhhccCCC-----CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 356677666654332 248999999999999998887 4588886 555
No 140
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=71.38 E-value=9.5 Score=34.00 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=41.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHH
Q 016579 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVV 367 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~I 367 (387)
++.+|-|.++++.+.+--..|.+ .+ ...+.+.+..+.--+.-++++.+..+|-+||.+ +++||++++|
T Consensus 128 ~d~~i~l~~~~~~~~~R~~~r~~---~~---~~~~~~~~~~~~~~~~y~~~~~~~~~~~~id~~-~~~e~v~~~i 195 (195)
T TIGR00041 128 PDLTIYLDIDPEVALERLRKRGE---LD---REEFEKLDFFEKVRQRYLELADKEKSIHVIDAT-NSVEEVEQDI 195 (195)
T ss_pred CCEEEEEeCCHHHHHHHHHhcCC---cc---hHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeCC-CCHHHHHhhC
Confidence 56799999999988764344421 11 112333333333333344555533478999966 7999999875
No 141
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=71.35 E-value=3.2 Score=35.60 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=21.1
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQ----KGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyKVA 274 (387)
|++.|-+++|||.++..||+ +|++|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~ 31 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVL 31 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 78999999999999987774 355554
No 142
>PRK07714 hypothetical protein; Provisional
Probab=71.24 E-value=21 Score=29.91 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=36.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016579 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+..=+.++.++.+...|..++||++.++ --..|...+|.++
T Consensus 38 ViiA~D~s~~~~~ki~~~~~~~~vp~~~~~--sk~eLG~a~Gk~~ 80 (100)
T PRK07714 38 VLLSEDASVNTTKKITDKCTYYNVPMRKVE--NRQQLGHAIGKDE 80 (100)
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCEEEeC--CHHHHHHHhCCCc
Confidence 666677789999999999999999999875 3588999999876
No 143
>PRK13695 putative NTPase; Provisional
Probab=71.22 E-value=34 Score=30.29 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=23.0
Q ss_pred cEEEEccCCCCCChhhHHhhh----cCceeeec
Q 016579 248 DIILSGVSRTGKTPLSIYLAQ----KGYKVANV 276 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~----~GyKVAN~ 276 (387)
.|+|+|.+++|||=+.-.+++ .|++++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~ 34 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGF 34 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 378999999999999998763 37776543
No 144
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.20 E-value=17 Score=38.61 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|+++|++++|||=++.-||.
T Consensus 226 i~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999994
No 145
>PTZ00088 adenylate kinase 1; Provisional
Probab=71.13 E-value=3 Score=39.92 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVA 274 (387)
|||+|.+++|||=++-+||+ +|+.+-
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~i 35 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHI 35 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 99999999999999999994 577654
No 146
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=71.11 E-value=7.2 Score=34.23 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCC---CEEEEEcC-----------C----HHHHHHHHHHHHHcCCCEeecchHH
Q 016579 145 EQLMVIIKQAAKDG---AMLVYTLA-----------D----PSMAESAKKACELWGIPSTDVLGPI 192 (387)
Q Consensus 145 e~l~~ii~~a~~~~---~iV~~Tlv-----------d----~elr~~l~~~~~~~gi~~vDllgp~ 192 (387)
+.+..+|+.+.+.. .||+.|.. + ..+.+.+++.|+++++++||+..++
T Consensus 93 ~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~~~~~ 158 (188)
T cd01827 93 KDYETMIDSFQALPSKPKIYICYPIPAYYGDGGFINDNIIKKEIQPMIDKIAKKLNLKLIDLHTPL 158 (188)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCcccccCCCccchHHHHHHHHHHHHHHHHHcCCcEEEccccc
Confidence 45566666654322 36666653 1 3567889999999999999998775
No 147
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=71.07 E-value=3.1 Score=37.72 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=24.7
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~PL 278 (387)
|.++|-|+||||-+.--|+ .+|+||+-+=.
T Consensus 4 i~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~ 37 (159)
T cd03116 4 IGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 6789999999999988777 35999877643
No 148
>PRK08181 transposase; Validated
Probab=70.68 E-value=3.2 Score=40.78 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=36.8
Q ss_pred CCCcHHHHhhhhhh-hhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016579 216 FPLSEEYFRRIEAI-EFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (387)
Q Consensus 216 ~~ld~~YF~RIeAI-eFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~PL 278 (387)
+.++.......... +|. +-| --++|+|.++||||=|+.-+| ++|++|.-++.
T Consensus 86 ~~~~~~~~~~L~~~~~~~---~~~--------~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 86 PMVSKAQVMAIAAGDSWL---AKG--------ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred CCCCHHHHHHHHHHHHHH---hcC--------ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 34556666666666 463 111 139999999999999999887 47998876664
No 149
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=70.54 E-value=18 Score=33.56 Aligned_cols=81 Identities=7% Similarity=0.115 Sum_probs=49.9
Q ss_pred cEEEEEe--CChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016579 98 KSIYMVS--DGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (387)
Q Consensus 98 ~~IfiVS--DsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l 174 (387)
++.|+-. |..|.. |+.+++.+....|++ +++.......+..+...+.+.. --+|+.+.-+.+.+..+
T Consensus 61 rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v------~i~~~~~~~~~~~~~~~~~~~~----~dvVi~~~d~~~~~~~l 130 (198)
T cd01485 61 SNFFLDAEVSNSGMNRAAASYEFLQELNPNV------KLSIVEEDSLSNDSNIEEYLQK----FTLVIATEENYERTAKV 130 (198)
T ss_pred ccEecccchhhcCchHHHHHHHHHHHHCCCC------EEEEEecccccchhhHHHHHhC----CCEEEECCCCHHHHHHH
Confidence 4555544 556654 445555555555653 3433322221223444444432 24888888889999999
Q ss_pred HHHHHHcCCCEeec
Q 016579 175 KKACELWGIPSTDV 188 (387)
Q Consensus 175 ~~~~~~~gi~~vDl 188 (387)
.+.|+++++|++..
T Consensus 131 n~~c~~~~ip~i~~ 144 (198)
T cd01485 131 NDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999874
No 150
>PRK07933 thymidylate kinase; Validated
Probab=70.53 E-value=25 Score=32.98 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=41.8
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC----HHHHHHHHHHHHHHhhhC--CCCcEEeCCCccHHHHHHH
Q 016579 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE----MDYVREELEFAGRIFAQN--PVWPVIEVTGKAIEETAAV 366 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~----~e~I~~EL~~A~~lf~k~--~g~pvIDVT~kSIEEtAa~ 366 (387)
|+.+|-|+++|+...+-.++|-..-+- . ....|-. .++|++.- .+++++. .+|-+||- .+++||+.+.
T Consensus 133 PDl~i~Ldv~~e~a~~Ri~~R~~~~~~-~-~~d~~E~~~~f~~~v~~~Y---~~~~~~~~~~~~~~ida-~~~~e~v~~~ 206 (213)
T PRK07933 133 PDLQVLLDVPVELAAERARRRAAQDAD-R-ARDAYERDDGLQQRTGAVY---AELAAQGWGGPWLVVDP-DVDPAALAAR 206 (213)
T ss_pred CCEEEEecCCHHHHHHHHHhhccccCC-c-ccccccccHHHHHHHHHHH---HHHHHhcCCCCeEEeCC-CCCHHHHHHH
Confidence 567899999999887744445211000 0 0011222 12333332 1222221 16889996 7899999999
Q ss_pred HHHHH
Q 016579 367 VLRLY 371 (387)
Q Consensus 367 Il~~~ 371 (387)
|.+.+
T Consensus 207 i~~~~ 211 (213)
T PRK07933 207 LAAAL 211 (213)
T ss_pred HHHHh
Confidence 98765
No 151
>PRK06547 hypothetical protein; Provisional
Probab=70.40 E-value=2.9 Score=38.15 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=17.9
Q ss_pred EEEE-ccCCCCCChhhHHhhhc
Q 016579 249 IILS-GVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLv-GVSRTsKTPlSmYLA~~ 269 (387)
+|+| |.|+||||=++-.||+.
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5555 99999999999999954
No 152
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=70.31 E-value=3 Score=35.53 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=24.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPI 278 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PL 278 (387)
|||+|||-+.+|||=|--.|.+.-..|.++|.
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~ 32 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPF 32 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCc
Confidence 89999999999999998888743224555553
No 153
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=70.24 E-value=3.6 Score=38.82 Aligned_cols=119 Identities=20% Similarity=0.145 Sum_probs=70.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeee-------------ccccC------------------------------CCCC
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVAN-------------VPIVM------------------------------GVEL 284 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN-------------~PLVp------------------------------~v~l 284 (387)
|.+=|.++||||-.|-=|| +.||+.-| ++|.. +..|
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nvVlegrL 82 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNVVLEGRL 82 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCeEEhhhh
Confidence 6788999999999999999 88999988 33332 2233
Q ss_pred CccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH--HHHHHHHHHHHHHhhhCCCC---------cEE
Q 016579 285 PKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM--DYVREELEFAGRIFAQNPVW---------PVI 353 (387)
Q Consensus 285 P~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~--e~I~~EL~~A~~lf~k~~g~---------pvI 353 (387)
-..++.....-.|=|.... ++|-+|...- .+-.|.+- +-.+.|-...++. ++..|+ -||
T Consensus 83 A~Wi~k~~adlkI~L~Apl----~vRa~Ria~R-----Egi~~~~a~~~~~~RE~se~kRY-~~~YgIDidDlSiyDLVi 152 (179)
T COG1102 83 AGWIVREYADLKIWLKAPL----EVRAERIAKR-----EGIDVDEALAETVEREESEKKRY-KKIYGIDIDDLSIYDLVI 152 (179)
T ss_pred HHHHhccccceEEEEeCcH----HHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHhCCCCccceeeEEEE
Confidence 3333332333333344333 3455555211 12233332 2233343344443 333454 478
Q ss_pred eCCCccHHHHHHHHHHHHhccccc
Q 016579 354 EVTGKAIEETAAVVLRLYHDRKHK 377 (387)
Q Consensus 354 DVT~kSIEEtAa~Il~~~~~r~~~ 377 (387)
|+++-++||+...|...+.....+
T Consensus 153 nTs~~~~~~v~~il~~aid~~~~~ 176 (179)
T COG1102 153 NTSKWDPEEVFLILLDAIDALSIK 176 (179)
T ss_pred ecccCCHHHHHHHHHHHHHhhccc
Confidence 999999999999998888765543
No 154
>PRK06683 hypothetical protein; Provisional
Probab=70.23 E-value=20 Score=29.40 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=40.8
Q ss_pred HHHHHHhCCC--EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016579 150 IIKQAAKDGA--MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (387)
Q Consensus 150 ii~~a~~~~~--iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~ 203 (387)
+++.++...+ +++..=+++.+++-+...|+.++||++.+. -...|....|.+
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~--t~~eLG~A~G~~ 72 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE--SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC--CHHHHHHHhCCc
Confidence 3444444443 677788899999999999999999999977 568888888865
No 155
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=70.22 E-value=3.1 Score=41.75 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~G 270 (387)
|+|+|+..||||-||+-||+++
T Consensus 7 i~I~GpTasGKS~LAl~LA~~~ 28 (300)
T PRK14729 7 VFIFGPTAVGKSNILFHFPKGK 28 (300)
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 8999999999999999999663
No 156
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=70.18 E-value=53 Score=31.04 Aligned_cols=109 Identities=26% Similarity=0.390 Sum_probs=77.3
Q ss_pred CcEEEEccCCCCCChhhHHhh-hcCceeeec-------------------cccCC----------------------C-C
Q 016579 247 ADIILSGVSRTGKTPLSIYLA-QKGYKVANV-------------------PIVMG----------------------V-E 283 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA-~~GyKVAN~-------------------PLVp~----------------------v-~ 283 (387)
-.|++-|-.+||||-||-.|| -.|++--|+ |++.+ . =
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~IVDyHgCd~ 87 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGGNIVDYHGCDF 87 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCCcEEeecccCc
Confidence 469999999999999999999 679888776 33321 1 2
Q ss_pred CCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHH-----HHHHHHHhhhCCCCcEEeCCCc
Q 016579 284 LPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREE-----LEFAGRIFAQNPVWPVIEVTGK 358 (387)
Q Consensus 284 lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~E-----L~~A~~lf~k~~g~pvIDVT~k 358 (387)
.|..+|+ .||-|+.+-+.|-+ ||++-|.+.. . =.+.++-| ++.|++-|... +|......
T Consensus 88 Fperwfd----lVvVLr~~~s~LY~----RL~sRgY~e~---K--i~eNiecEIfgv~~eea~eSy~~~---iV~eL~s~ 151 (176)
T KOG3347|consen 88 FPERWFD----LVVVLRTPNSVLYD----RLKSRGYSEK---K--IKENIECEIFGVVLEEARESYSPK---IVVELQSE 151 (176)
T ss_pred cchhhee----EEEEEecCchHHHH----HHHHcCCCHH---H--HhhhcchHHHHHHHHHHHHHcCCc---ceeecCcC
Confidence 4666764 59999999999975 7876664321 0 01122223 46788999874 78999999
Q ss_pred cHHHHHHHHHHHH
Q 016579 359 AIEETAAVVLRLY 371 (387)
Q Consensus 359 SIEEtAa~Il~~~ 371 (387)
..||.-+.|=+++
T Consensus 152 ~~Eem~~ni~ri~ 164 (176)
T KOG3347|consen 152 TKEEMESNISRIL 164 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9988877665544
No 157
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=69.93 E-value=9.1 Score=32.89 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=25.5
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccCCCC
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVE 283 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~ 283 (387)
-|+++|-+.+|||-+-..|.+..+ ..++|-..+.+
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~ 38 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVE 38 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCccccee
Confidence 389999999999999888886544 35555444333
No 158
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.91 E-value=3 Score=38.88 Aligned_cols=19 Identities=42% Similarity=0.427 Sum_probs=17.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016579 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
|+|||++++|||=|..=||
T Consensus 4 i~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHH
Confidence 7899999999999988777
No 159
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=69.78 E-value=12 Score=32.76 Aligned_cols=50 Identities=14% Similarity=0.269 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEcCC---------------HHHHHHHHHHHHHcCCCEeecchHHH
Q 016579 144 VEQLMVIIKQAAKDG-AMLVYTLAD---------------PSMAESAKKACELWGIPSTDVLGPIT 193 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~-~iV~~Tlvd---------------~elr~~l~~~~~~~gi~~vDllgp~i 193 (387)
.+.+..+|+.+...+ .+|+.|+.+ .++.+.+++.|++.|++++|+..++.
T Consensus 91 ~~~~~~~i~~i~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~vd~~~~~~ 156 (185)
T cd01832 91 RADLEEAVRRLRAAGARVVVFTIPDPAVLEPFRRRVRARLAAYNAVIRAVAARYGAVHVDLWEHPE 156 (185)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHHHHcCCEEEecccCcc
Confidence 455566677775434 466676643 23677889999999999999988754
No 160
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.63 E-value=59 Score=32.74 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=85.6
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEEcCCHHH--
Q 016579 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYTLADPSM-- 170 (387)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~Tlvd~el-- 170 (387)
.++.++.|.|.-. ....++.-...+..+ +++++.+.||--.+.+++.+.|+++.++. +|+++.=.-+.+
T Consensus 34 P~Laii~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~ 107 (285)
T PRK10792 34 PGLAVVLVGSDPA--SQVYVASKRKACEEV----GFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDN 107 (285)
T ss_pred ceEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH
Confidence 4577888877664 455555555555443 46788899998888999999999886553 666653222222
Q ss_pred HHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcE
Q 016579 171 AESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADI 249 (387)
Q Consensus 171 r~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADI 249 (387)
.+.++...-+++| |-|.|. +..|. .|.+. -.| ..| .||=-.++|- | -+|....+
T Consensus 108 ~~i~~~I~p~KDV---DGl~~~n~g~l~--~~~~~-~~P-cTp--------------~av~~ll~~~-~---i~l~Gk~v 162 (285)
T PRK10792 108 VKVLERIHPDKDV---DGFHPYNVGRLA--QRIPL-LRP-CTP--------------RGIMTLLERY-G---IDTYGLNA 162 (285)
T ss_pred HHHHhccCccccc---CccChhhHhHHh--CCCCC-CCC-CCH--------------HHHHHHHHHc-C---CCCCCCEE
Confidence 3334444434433 556553 22221 23211 001 122 2222222221 1 16777899
Q ss_pred EEEccCCCCCChhhHHhhhcCcee
Q 016579 250 ILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 250 VLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
++||=|++-=-||+++|.++|..|
T Consensus 163 vViGrs~iVG~Pla~lL~~~~atV 186 (285)
T PRK10792 163 VVVGASNIVGRPMSLELLLAGCTV 186 (285)
T ss_pred EEECCCcccHHHHHHHHHHCCCeE
Confidence 999999955569999999988544
No 161
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=69.46 E-value=3.1 Score=38.55 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~P 277 (387)
+.++|.|+||||-|.--|. .+|+||+=|=
T Consensus 9 i~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik 41 (173)
T PRK10751 9 LAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (173)
T ss_pred EEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence 6899999999999755444 6699998764
No 162
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=68.92 E-value=3.1 Score=40.65 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=24.2
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCceeeecccc
Q 016579 248 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIV 279 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLV 279 (387)
=+|++|.|+||||=+.++|- +.+.+-++|=++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 48999999999999999998 444433555444
No 163
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.80 E-value=8 Score=40.13 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=20.1
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
--|+++|+.++|||=|+.-||.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999994
No 164
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=68.80 E-value=12 Score=33.34 Aligned_cols=125 Identities=20% Similarity=0.242 Sum_probs=62.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccC--------------------------CCcEEEEecC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVD--------------------------PEKVFGLTIN 302 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~--------------------------~~KI~GLTId 302 (387)
|+|||-+++|||=+-..|...-+.+.+++-.-+...+..++.++ .--++.|..|
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D 82 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYD 82 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEE
Confidence 89999999999999877764434433333222222222111111 1225566665
Q ss_pred hh---HHHHHHHHH--HhhcCCCC-C--CCCCCCCHHHHH-HHHHHHHHHhhhCCCCcEEeCCC---ccHHHHHHHHHHH
Q 016579 303 PL---VLQSIRKAR--ARSLGFRD-E--IRSNYSEMDYVR-EELEFAGRIFAQNPVWPVIEVTG---KAIEETAAVVLRL 370 (387)
Q Consensus 303 Pe---rL~~IR~eR--lk~lGl~~-~--~~S~YA~~e~I~-~EL~~A~~lf~k~~g~pvIDVT~---kSIEEtAa~Il~~ 370 (387)
.. .+.+++... +..++... + --.+-.|+..-+ ...+.++++.++. ++|++.++. ..|+|.-..|.+.
T Consensus 83 ~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~-~~~~~e~Sa~~~~~v~~l~~~l~~~ 161 (191)
T cd04112 83 ITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEY-GVPFMETSAKTGLNVELAFTAVAKE 161 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 43 343344322 12222110 0 001234442100 1123466666664 888887754 4677777777776
Q ss_pred Hhcc
Q 016579 371 YHDR 374 (387)
Q Consensus 371 ~~~r 374 (387)
+..+
T Consensus 162 ~~~~ 165 (191)
T cd04112 162 LKHR 165 (191)
T ss_pred HHHh
Confidence 6554
No 165
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=68.55 E-value=17 Score=31.60 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCCEeecchHHHH
Q 016579 169 SMAESAKKACELWGIPSTDVLGPITE 194 (387)
Q Consensus 169 elr~~l~~~~~~~gi~~vDllgp~i~ 194 (387)
.+.+.+++.|+++|++++|+...+..
T Consensus 143 ~~~~~~~~~a~~~~~~~iD~~~~~~~ 168 (199)
T cd01838 143 QYAEACVEVAEELGVPVIDLWTAMQE 168 (199)
T ss_pred HHHHHHHHHHHHhCCcEEEHHHHHHh
Confidence 45567888999999999999876654
No 166
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=68.35 E-value=5.4 Score=37.77 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=32.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccc
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSL 288 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eL 288 (387)
|-|+|+|-+.+|||-|--.|.+...+++|+|..--.+.|..+
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~ 42 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVL 42 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEE
Confidence 568999999999999988888666789999976533334443
No 167
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=68.29 E-value=3.7 Score=39.45 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.1
Q ss_pred CcEEEEccCCCCCChhhHHhhh-cCceee
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~-~GyKVA 274 (387)
-.|+|.|.++||||=+..+||+ .|+++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 4689999999999999999994 555443
No 168
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=68.10 E-value=3.4 Score=38.05 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+|+|.|++|||=++=.||++
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999977
No 169
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=68.08 E-value=26 Score=28.90 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=40.6
Q ss_pred HHHHHHhCCC--EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016579 150 IIKQAAKDGA--MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (387)
Q Consensus 150 ii~~a~~~~~--iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~ 203 (387)
+++.++...+ +|+..=+++++++.+...|+.++||++..+ -...|...+|.+
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~--t~~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID--TMKELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC--CHHHHHHHHCCc
Confidence 4444444443 666777889999999999999999997655 558899999887
No 170
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=67.70 E-value=2.5 Score=39.30 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=26.7
Q ss_pred CCCCcCcE-EEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016579 242 QNLQKADI-ILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (387)
Q Consensus 242 ~~L~~ADI-VLvGVSRTsKTPlSmYLA~----~GyKVAN~PL 278 (387)
.|+.+=-+ ++.|.++||||.++..++. .|.||.-+-+
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 35554444 4559999999999999863 4777765554
No 171
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=67.61 E-value=29 Score=35.54 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=20.6
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhh
Q 016579 243 NLQKADII-LSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 243 ~L~~ADIV-LvGVSRTsKTPlSmYLA 267 (387)
|+..--|+ |.|.++||||=+|+-||
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqla 147 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLC 147 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHH
Confidence 55555555 89999999999999998
No 172
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=67.42 E-value=24 Score=31.52 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=18.9
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016579 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
=|+|.|.|++|||-++-.|+.+
T Consensus 20 ~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 20 VIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999888843
No 173
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=67.09 E-value=3.9 Score=42.88 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=19.0
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|.|.++||||=++-.||+
T Consensus 91 iLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999994
No 174
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=67.04 E-value=3.7 Score=37.35 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=23.2
Q ss_pred EEEEccCCCCCChhhHHhhhc----Cceeeecc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK----GYKVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~----GyKVAN~P 277 (387)
|.+.|.|+||||=+|--|+.. |.+++-+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~ 34 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS 34 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 578999999999999999844 66666553
No 175
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=66.56 E-value=28 Score=36.23 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=55.2
Q ss_pred cEEEEE-eCCh-HHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHHH
Q 016579 98 KSIYMV-SDGT-GWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG-AMLVYTLADPSMAESA 174 (387)
Q Consensus 98 ~~IfiV-SDsT-GeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~-~iV~~Tlvd~elr~~l 174 (387)
+.+|+| ||-. +.++..++|..+.+-.+ + -+..+.+|+ ...++..||+++++.+ -+||.||+=+.-....
T Consensus 135 ~r~~lvGSdYv~pre~Nri~r~~l~~~Gg-e-----vvgE~Y~pl--g~td~~~ii~~I~~~~Pd~V~stlvG~s~~aF~ 206 (363)
T PF13433_consen 135 KRFYLVGSDYVYPRESNRIIRDLLEARGG-E-----VVGERYLPL--GATDFDPIIAEIKAAKPDFVFSTLVGDSNVAFY 206 (363)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTT--E-----EEEEEEE-S---HHHHHHHHHHHHHHT-SEEEEE--TTCHHHHH
T ss_pred ceEEEecCCccchHHHHHHHHHHHHHcCC-E-----EEEEEEecC--CchhHHHHHHHHHhhCCCEEEEeCcCCcHHHHH
Confidence 778877 8876 89999999999999954 2 256677787 3478999999985544 6999999998888777
Q ss_pred HHHHH
Q 016579 175 KKACE 179 (387)
Q Consensus 175 ~~~~~ 179 (387)
+++..
T Consensus 207 r~~~~ 211 (363)
T PF13433_consen 207 RAYAA 211 (363)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 176
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=65.68 E-value=4.3 Score=42.55 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=39.0
Q ss_pred hhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh----cCceeeeccccC---CCCCCcc
Q 016579 230 EFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPIVM---GVELPKS 287 (387)
Q Consensus 230 eFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~----~GyKVAN~PLVp---~v~lP~e 287 (387)
++...+|- ++...-...=+.|+|..-||||=|+-|||| +|+||+=+=+=+ ++-+|..
T Consensus 58 ~i~~~~~~-~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ 121 (398)
T COG1341 58 EIADTWES-KSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGF 121 (398)
T ss_pred HHhhcccc-cchhccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCce
Confidence 44454444 333344456699999999999999999995 489988665443 4555543
No 177
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=65.27 E-value=20 Score=33.35 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=49.4
Q ss_pred cEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016579 98 KSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (387)
Q Consensus 98 ~~IfiVSDsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (387)
+++|+-.+..|.+ |+.+++.+..-.|++ +++.+.. .+. +...+.+++ --+|+.+..+.+.+..+.+
T Consensus 63 rqfl~~~~diG~~Ka~a~~~~L~~lNp~v------~i~~~~~-~~~--~~~~~~~~~----~dvVi~~~~~~~~~~~ln~ 129 (197)
T cd01492 63 AQFLIPAEDLGQNRAEASLERLRALNPRV------KVSVDTD-DIS--EKPEEFFSQ----FDVVVATELSRAELVKINE 129 (197)
T ss_pred CCccccHHHcCchHHHHHHHHHHHHCCCC------EEEEEec-Ccc--ccHHHHHhC----CCEEEECCCCHHHHHHHHH
Confidence 4555555555653 566666666667764 3444432 222 222333332 2488888889999999999
Q ss_pred HHHHcCCCEee
Q 016579 177 ACELWGIPSTD 187 (387)
Q Consensus 177 ~~~~~gi~~vD 187 (387)
.|.++++|++.
T Consensus 130 ~c~~~~ip~i~ 140 (197)
T cd01492 130 LCRKLGVKFYA 140 (197)
T ss_pred HHHHcCCCEEE
Confidence 99999999875
No 178
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=65.21 E-value=5 Score=34.33 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+|.|.+++|||=++-.|++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 689999999999999999964
No 179
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=65.16 E-value=3.6 Score=37.38 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhc
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
--|+|.|.++||||-+..++++.
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999954
No 180
>PRK13976 thymidylate kinase; Provisional
Probab=65.10 E-value=36 Score=32.04 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=42.1
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCC-CCcEEeCCC--cc---HHHHHHH
Q 016579 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNP-VWPVIEVTG--KA---IEETAAV 366 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~-g~pvIDVT~--kS---IEEtAa~ 366 (387)
|+.+|-|+++|+...+-.+.| ++.. .+. .-+++|++.- .+++++.. +|.+||-+. ++ +||+.+.
T Consensus 125 PDl~i~Ldv~~e~a~~Ri~~~----~~e~-~~~--~~l~~v~~~Y---~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~ 194 (209)
T PRK13976 125 PDITFVLDIDIELSLSRADKN----GYEF-MDL--EFYDKVRKGF---REIVIKNPHRCHVITCIDAKDNIEDINSVHLE 194 (209)
T ss_pred CCEEEEEeCCHHHHHHHhccc----chhc-ccH--HHHHHHHHHH---HHHHHhCCCCeEEEECCCCccCcCCHHHHHHH
Confidence 567899999999876632211 1100 000 1123444332 22333322 589999853 45 9999999
Q ss_pred HHHHHhcc
Q 016579 367 VLRLYHDR 374 (387)
Q Consensus 367 Il~~~~~r 374 (387)
|++++.+.
T Consensus 195 i~~~i~~~ 202 (209)
T PRK13976 195 IVKLLHAV 202 (209)
T ss_pred HHHHHHHH
Confidence 99988765
No 181
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=64.88 E-value=3.9 Score=40.08 Aligned_cols=65 Identities=26% Similarity=0.278 Sum_probs=35.0
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec---------cccCCCCCCccccccCCCc------EEEEecChhHHHHHHHH
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV---------PIVMGVELPKSLFQVDPEK------VFGLTINPLVLQSIRKA 312 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~---------PLVp~v~lP~eLf~v~~~K------I~GLTIdPerL~~IR~e 312 (387)
++|+|++.||||=+++=|| +.|.-|-+. ...-+-|.|.+|..+.+-- .=|- |+++..++-=-.
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~Li~ 82 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERLIS 82 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHHHH
Confidence 5799999999999999999 567776553 2223677888886543311 1122 666665554334
Q ss_pred HH
Q 016579 313 RA 314 (387)
Q Consensus 313 Rl 314 (387)
++
T Consensus 83 ~v 84 (233)
T PF01745_consen 83 EV 84 (233)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 182
>PRK10867 signal recognition particle protein; Provisional
Probab=64.67 E-value=4.5 Score=42.54 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=24.9
Q ss_pred CcEEEEccCCCCCChhhHHhh----hc-Cceeeeccc
Q 016579 247 ADIILSGVSRTGKTPLSIYLA----QK-GYKVANVPI 278 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA----~~-GyKVAN~PL 278 (387)
.=|+++|+.++|||=++..|| .+ |+||+-+-.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 458999999999999777776 34 888876543
No 183
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=64.61 E-value=35 Score=32.92 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=56.3
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Q 016579 97 GKSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAK 175 (387)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~ 175 (387)
.+++|...+..|. =++.+++.+..-+|++ +++.+. -+++ .+.+.+++. .+--+|+.++-+.+.+..|.
T Consensus 52 nRq~~~~~~diG~~Kae~~~~~l~~inP~~------~V~~~~-~~i~-~~~~~~l~~---~~~D~VvdaiD~~~~k~~L~ 120 (231)
T cd00755 52 NRQIHALLSTVGKPKVEVMAERIRDINPEC------EVDAVE-EFLT-PDNSEDLLG---GDPDFVVDAIDSIRAKVALI 120 (231)
T ss_pred cchhCcChhhCCCcHHHHHHHHHHHHCCCc------EEEEee-eecC-HhHHHHHhc---CCCCEEEEcCCCHHHHHHHH
Confidence 4556655555664 5666677777777764 333322 2443 444555441 22359999999999999999
Q ss_pred HHHHHcCCCEeecch
Q 016579 176 KACELWGIPSTDVLG 190 (387)
Q Consensus 176 ~~~~~~gi~~vDllg 190 (387)
++|.++++|+|..+|
T Consensus 121 ~~c~~~~ip~I~s~g 135 (231)
T cd00755 121 AYCRKRKIPVISSMG 135 (231)
T ss_pred HHHHHhCCCEEEEeC
Confidence 999999999999876
No 184
>PRK14526 adenylate kinase; Provisional
Probab=64.55 E-value=4.3 Score=38.32 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyK 272 (387)
|+|+|.++||||-++-.|| ..|+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~ 27 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYY 27 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 8999999999999999999 56764
No 185
>PRK09183 transposase/IS protein; Provisional
Probab=64.42 E-value=4.8 Score=38.96 Aligned_cols=48 Identities=31% Similarity=0.520 Sum_probs=33.3
Q ss_pred CcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016579 218 LSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 218 ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
++..-...+.+++| +.. | --++|+|.++||||=|+.-|| +.|++|.=+
T Consensus 85 ~~~~~i~~L~~~~~-i~~--~--------~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 85 APQKQLQSLRSLSF-IER--N--------ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCHHHHHHHhcCCc-hhc--C--------CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 44445556666666 332 1 248999999999999998885 468887643
No 186
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=64.40 E-value=4.3 Score=37.15 Aligned_cols=51 Identities=33% Similarity=0.606 Sum_probs=29.8
Q ss_pred CCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016579 217 PLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (387)
Q Consensus 217 ~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~----~GyKVAN~PL 278 (387)
..+....+.+.+.+|. +.|+ -++|.|.++||||=|+.=+|+ +|++|.=+..
T Consensus 29 ~~~~~~~~~l~~~~~~---~~~~--------~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 29 GIDKAQIAQLAALEFI---ENGE--------NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp -----HHHHHHHH-S----SC----------EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred hHHHHHHHHHhcCCCc---ccCe--------EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 3445566666666664 1222 299999999999999987774 7888765543
No 187
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=64.32 E-value=25 Score=35.78 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=49.2
Q ss_pred cEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016579 98 KSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (387)
Q Consensus 98 ~~IfiVSDsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (387)
+++++-.|..|.. |+.+++.+..-+|++ ++..++..-+.+.+.+++++ --+||.+.-+.+.|..+.+
T Consensus 177 Rq~l~~~~diG~~Ka~~~~~~l~~~np~v--------~v~~~~~~~~~~~~~~~~~~----~D~Vv~~~d~~~~r~~ln~ 244 (376)
T PRK08762 177 RQILHTEDRVGQPKVDSAAQRLAALNPDV--------QVEAVQERVTSDNVEALLQD----VDVVVDGADNFPTRYLLND 244 (376)
T ss_pred cccccchhhCCCcHHHHHHHHHHHHCCCC--------EEEEEeccCChHHHHHHHhC----CCEEEECCCCHHHHHHHHH
Confidence 4555544445533 444455444445542 33333322234445555432 2499999999999999999
Q ss_pred HHHHcCCCEeec
Q 016579 177 ACELWGIPSTDV 188 (387)
Q Consensus 177 ~~~~~gi~~vDl 188 (387)
.|.++++|+|..
T Consensus 245 ~~~~~~ip~i~~ 256 (376)
T PRK08762 245 ACVKLGKPLVYG 256 (376)
T ss_pred HHHHcCCCEEEE
Confidence 999999999875
No 188
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=64.32 E-value=8.4 Score=39.42 Aligned_cols=47 Identities=34% Similarity=0.485 Sum_probs=34.5
Q ss_pred CCcHHHHhhhhhhhhhhhCCC-----CC-CCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016579 217 PLSEEYFRRIEAIEFTIKQDD-----GA-LPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 217 ~ld~~YF~RIeAIeFavkhDD-----G~-~~~~L~~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
.+++..-+=.++|++-+.|-+ |. .|.+ |+|.|.++||||-++-++|+
T Consensus 135 Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~g-----vLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 135 GLEEQIREVREAVELPLKKPELFEEVGIEPPKG-----VLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCc-----eEEECCCCCChHHHHHHHHH
Confidence 455666666677877777743 32 2322 89999999999999999995
No 189
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=64.23 E-value=7.2 Score=39.10 Aligned_cols=46 Identities=35% Similarity=0.502 Sum_probs=31.3
Q ss_pred CcHHHHhhhhhhhhhhhCCC-----CC-CCCCCCcCcEEEEccCCCCCChhhHHhhh
Q 016579 218 LSEEYFRRIEAIEFTIKQDD-----GA-LPQNLQKADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 218 ld~~YF~RIeAIeFavkhDD-----G~-~~~~L~~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
+++..-+=.++|++-+.|.+ |. .|++ ++|.|.++||||-+.-.+|+
T Consensus 127 l~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~g-----vLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 127 LEEQIREIREAVELPLKHPELFEEVGIEPPKG-----VLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHhcCCCCCce-----EEEECCCCCCHHHHHHHHHH
Confidence 33444444456676666654 22 2222 99999999999999999994
No 190
>PRK03846 adenylylsulfate kinase; Provisional
Probab=64.12 E-value=15 Score=33.52 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.5
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016579 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
=|+|+|.|++|||-+.--|+.+
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998854
No 191
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=64.09 E-value=5 Score=32.96 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.5
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016579 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
||+|+|.+++|||-|--.|...
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccC
Confidence 6999999999999998888754
No 192
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=63.96 E-value=4.7 Score=39.41 Aligned_cols=21 Identities=38% Similarity=0.333 Sum_probs=18.6
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016579 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
-|+|+|++++|||=|+.-||.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988883
No 193
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=63.67 E-value=22 Score=31.07 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEcC-----------------CHHHHHHHHHHHHHcCCCEeecchHHHHH
Q 016579 144 VEQLMVIIKQAAKDGA-MLVYTLA-----------------DPSMAESAKKACELWGIPSTDVLGPITEA 195 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~~-iV~~Tlv-----------------d~elr~~l~~~~~~~gi~~vDllgp~i~~ 195 (387)
.+.++++++.+.+.++ +|+.|.. -..+.+.+++.|++.+++++|+...+.+.
T Consensus 82 ~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~vd~~~~~~~~ 151 (183)
T cd04501 82 KDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARENGLLFLDFYSPLLDE 151 (183)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHcCCCEEechhhhhcc
Confidence 4455666777766564 4555421 13667789999999999999998876543
No 194
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=63.59 E-value=5.3 Score=38.31 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|||+|+++||||=++-.||++
T Consensus 5 iil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 688899999999999999954
No 195
>PRK14974 cell division protein FtsY; Provisional
Probab=63.58 E-value=5.5 Score=40.55 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=21.0
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeee
Q 016579 248 DIILSGVSRTGKTPLSIYLA----QKGYKVAN 275 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA----~~GyKVAN 275 (387)
=|+++|+.++|||=++--|| ++|++|+-
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l 173 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI 173 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 38899999999999665555 45666654
No 196
>PRK07773 replicative DNA helicase; Validated
Probab=63.18 E-value=57 Score=37.27 Aligned_cols=109 Identities=18% Similarity=0.121 Sum_probs=62.6
Q ss_pred CCCCcCc-EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCC
Q 016579 242 QNLQKAD-IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFR 320 (387)
Q Consensus 242 ~~L~~AD-IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~ 320 (387)
.||..-| |||.|-+++|||=+++=+|..+-+-.+ .+--+|.|.++++.|.+ |+.+....
T Consensus 212 ~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~----------------~~V~~fSlEms~~ql~~----R~~s~~~~ 271 (886)
T PRK07773 212 NGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHR----------------LAVAIFSLEMSKEQLVM----RLLSAEAK 271 (886)
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcC----------------CeEEEEecCCCHHHHHH----HHHHHhcC
Confidence 6788888 556788999999999999843221101 12236888888888763 55443221
Q ss_pred CC----CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016579 321 DE----IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 321 ~~----~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
-+ ...... .+.. ..+..|-..+.+. .+-+-|..+.+++|+.+.|..+..+
T Consensus 272 i~~~~i~~g~l~-~~~~-~~~~~a~~~l~~~-~i~i~d~~~~~i~~i~~~~r~~~~~ 325 (886)
T PRK07773 272 IKLSDMRSGRMS-DDDW-TRLARAMGEISEA-PIFIDDTPNLTVMEIRAKARRLRQE 325 (886)
T ss_pred CCHHHHhcCCCC-HHHH-HHHHHHHHHHhcC-CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 00 000111 1111 1233333334443 5666678888999998888776643
No 197
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=63.11 E-value=5.3 Score=32.21 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.5
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
+=|+|+|.+++|||-+--.|..........|.+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~ 35 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTT 35 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCce
Confidence 3489999999999999888875545555555444
No 198
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=62.92 E-value=5.6 Score=36.94 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.2
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN 275 (387)
|.|.|.++||||=++=+|+.+|++|-+
T Consensus 8 igitG~igsGKSt~~~~l~~~g~~v~d 34 (208)
T PRK14731 8 VGVTGGIGSGKSTVCRFLAEMGCELFE 34 (208)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCeEEe
Confidence 678999999999999999999988854
No 199
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.72 E-value=1.2e+02 Score=30.45 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=86.2
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
..++.++.|.|.-+. ...++.-...++.+ +++++.+.||--.+++++.+.|+++.++. +|+++ =|-. -+
T Consensus 32 ~P~Laii~vg~d~as--~~Yv~~k~k~~~~~----Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~ 105 (284)
T PRK14179 32 VPGLVVILVGDNPAS--QVYVRNKERSALAA----GFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHIN 105 (284)
T ss_pred CceEEEEEeCCChhH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCC
Confidence 446788888877653 33444333333332 35788999998889999999999986554 56554 4431 11
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-...+..-.-+++ ||-|.|. +..|. .|.+. -.| ..| ..= |+=++| | |. +|...+
T Consensus 106 ~~~i~~~I~p~KD---VDGl~~~N~g~l~--~~~~~-~~P-cTp-------~av---i~lL~~---~--~i---~l~Gk~ 160 (284)
T PRK14179 106 EEKILLAIDPKKD---VDGFHPMNTGHLW--SGRPV-MIP-CTP-------AGI---MEMFRE---Y--NV---ELEGKH 160 (284)
T ss_pred HHHHHhccCcccc---ccccCHhhHHHHh--CCCCC-CcC-CCH-------HHH---HHHHHH---h--CC---CCCCCE
Confidence 2223333333333 3656654 22221 23221 111 122 111 111221 1 22 566678
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
|++||-|..==.|++++|.++|+.|.
T Consensus 161 v~vIG~S~ivG~Pla~lL~~~gatVt 186 (284)
T PRK14179 161 AVVIGRSNIVGKPMAQLLLDKNATVT 186 (284)
T ss_pred EEEECCCCcCcHHHHHHHHHCCCEEE
Confidence 99999999999999999999998775
No 200
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=62.57 E-value=5 Score=38.80 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
|-++|.|++|||=++--|+ ++||||+=+
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 5689999999999988555 679999987
No 201
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=62.54 E-value=3.6 Score=40.28 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=20.6
Q ss_pred CcEEEEccCCCCCChhh----HHhhhcCce
Q 016579 247 ADIILSGVSRTGKTPLS----IYLAQKGYK 272 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlS----mYLA~~GyK 272 (387)
..++|.|.++||||-+. .+|...|+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYV 88 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 46999999999999999 455456664
No 202
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=62.01 E-value=38 Score=28.91 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=36.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016579 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+.+=+.++.++.+.+.|+.++||++.++.. ..|...+|.++
T Consensus 37 VI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~--~eLg~a~Gk~~ 79 (104)
T PRK05583 37 IIISNDISENSKNKFKNYCNKYNIPYIEGYSK--EELGNAIGRDE 79 (104)
T ss_pred EEEeCCCCHhHHHHHHHHHHHcCCCEEEecCH--HHHHHHhCCCC
Confidence 55666677999999999999999999998654 78999999876
No 203
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=61.93 E-value=5.8 Score=38.73 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.8
Q ss_pred CCCcCcE-EEEccCCCCCChhhHHhh
Q 016579 243 NLQKADI-ILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 243 ~L~~ADI-VLvGVSRTsKTPlSmYLA 267 (387)
|+..-.| .+.|.++||||-+|+.||
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~ 116 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLA 116 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 5555555 488999999999999998
No 204
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=61.64 E-value=18 Score=32.75 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCC-EEEEEcCC---------HHHHHHHHHHHHHcCCCEeecchH
Q 016579 144 VEQLMVIIKQAAKDGA-MLVYTLAD---------PSMAESAKKACELWGIPSTDVLGP 191 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~~-iV~~Tlvd---------~elr~~l~~~~~~~gi~~vDllgp 191 (387)
.+.+..+++++...++ +|+.++.- ..+.+.+++.|++++++++|++.+
T Consensus 94 ~~~l~~li~~~~~~~~~~ill~~~~P~~~~~~~~~~~~~~~~~~a~~~~v~~id~~~~ 151 (191)
T PRK10528 94 EQTLRQIIQDVKAANAQPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDIPLLPFFME 151 (191)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCcccHHHHHHHHHHHHHHHHHhCCCccHHHHH
Confidence 3666777777765553 44444311 356777899999999999997643
No 205
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=61.56 E-value=17 Score=31.59 Aligned_cols=86 Identities=10% Similarity=-0.018 Sum_probs=53.7
Q ss_pred EEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccc---cCCHHHHHHHHHHHHhCCCEEEEEcCC-----HHH
Q 016579 99 SIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSG---IDDVEQLMVIIKQAAKDGAMLVYTLAD-----PSM 170 (387)
Q Consensus 99 ~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~---V~t~e~l~~ii~~a~~~~~iV~~Tlvd-----~el 170 (387)
.|--.+..++.++..+.+..+.+-... ++- ...=. ....++++++++.+..+..+|+.|... .++
T Consensus 25 ~i~a~~g~~~~~~~~~l~~~~~~~~~~------d~v-vi~lGtNd~~~~~nl~~ii~~~~~~~~ivlv~~~~~~~~~~~~ 97 (150)
T cd01840 25 QIDAKVGRQMSEAPDLIRQLKDSGKLR------KTV-VIGLGTNGPFTKDQLDELLDALGPDRQVYLVNPHVPRPWEPDV 97 (150)
T ss_pred EEEeeecccHHHHHHHHHHHHHcCCCC------CeE-EEEecCCCCCCHHHHHHHHHHcCCCCEEEEEECCCCcchHHHH
Confidence 344444455566777777666543111 111 11001 135789999998875434577766654 477
Q ss_pred HHHHHHHHHHc-CCCEeecchH
Q 016579 171 AESAKKACELW-GIPSTDVLGP 191 (387)
Q Consensus 171 r~~l~~~~~~~-gi~~vDllgp 191 (387)
.+.+++.|+++ +++++|+...
T Consensus 98 n~~~~~~a~~~~~v~~id~~~~ 119 (150)
T cd01840 98 NAYLLDAAKKYKNVTIIDWYKA 119 (150)
T ss_pred HHHHHHHHHHCCCcEEecHHHH
Confidence 88999999999 9999997654
No 206
>PRK09267 flavodoxin FldA; Validated
Probab=61.10 E-value=70 Score=28.31 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=48.5
Q ss_pred CCcCcEEEEccCCCCCCh---h------hHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHH
Q 016579 244 LQKADIILSGVSRTGKTP---L------SIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARA 314 (387)
Q Consensus 244 L~~ADIVLvGVSRTsKTP---l------SmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRl 314 (387)
|..=-+.++|+..+...+ . --.|.++|.+++..-...+...+... .+...+..||.+|+++=.+.+.+|+
T Consensus 78 l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~-~~~~~~~~g~~~d~~~~~~~td~~i 156 (169)
T PRK09267 78 FSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASK-AVDDGKFVGLALDEDNQSELTDERI 156 (169)
T ss_pred CCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccc-eeeCCEEEEEEecCCCchhhhHHHH
Confidence 444458899986554444 1 22356889888877666677776654 3445667999999988877777777
Q ss_pred h
Q 016579 315 R 315 (387)
Q Consensus 315 k 315 (387)
+
T Consensus 157 ~ 157 (169)
T PRK09267 157 E 157 (169)
T ss_pred H
Confidence 3
No 207
>PRK08727 hypothetical protein; Validated
Probab=61.09 E-value=5.7 Score=37.52 Aligned_cols=31 Identities=42% Similarity=0.592 Sum_probs=26.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecccc
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIV 279 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~PLV 279 (387)
++|.|.|+||||=|...++ ++|++|.=+|+-
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 9999999999999988874 568888777653
No 208
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=61.01 E-value=5.8 Score=38.83 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
|+++|+.++|||=++.=|| ++|+||+
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g~~V~ 104 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQGKSVL 104 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 7789999999999887776 4466664
No 209
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=60.59 E-value=4 Score=35.83 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQ----KGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyKVA 274 (387)
++|.|.++||||=+++-++. .|.+|.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~ 31 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGL 31 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 68899999999999987664 455553
No 210
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=60.46 E-value=42 Score=29.43 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.1
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016579 246 KADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
+.=|+|+|.+++|||-|--.|.+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999888874
No 211
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=60.41 E-value=6.4 Score=34.88 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
|.++|.+++|||.++.-|+ ..|+||.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ 31 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVA 31 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 6789999999999887776 3566653
No 212
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.40 E-value=6.4 Score=41.72 Aligned_cols=40 Identities=40% Similarity=0.551 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCc---CcEEEEccCCCCCChhhHHhh----hcCceee
Q 016579 235 QDDGALPQNLQK---ADIILSGVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 235 hDDG~~~~~L~~---ADIVLvGVSRTsKTPlSmYLA----~~GyKVA 274 (387)
-|-|...-...+ +=|.+||+-++|||-+|-=|| ++|||++
T Consensus 87 ~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~ 133 (483)
T KOG0780|consen 87 LDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVA 133 (483)
T ss_pred hCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCcee
Confidence 455665544433 457899999999999987666 5799987
No 213
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=60.24 E-value=4.2 Score=37.46 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=25.2
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016579 243 NLQKAD-IILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA----~~GyKVAN~PL 278 (387)
|+..-. ++|.|.++||||-+++.++ ++|.+|.-+-+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 444444 5678999999999998655 45666655544
No 214
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=60.12 E-value=42 Score=32.73 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=67.8
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCC-EEEEEcCCHHHHHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGA-MLVYTLADPSMAES 173 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~-iV~~Tlvd~elr~~ 173 (387)
..+..||++-- +=++++.+++.+..|| ++ .+.-...+|.+ .++-+++++++.+.++ ||+--|--|.=-..
T Consensus 103 ~~~~~v~llG~-~~~v~~~a~~~l~~~y-~l------~i~g~~~Gyf~-~~e~~~i~~~I~~s~~dil~VglG~PkQE~~ 173 (243)
T PRK03692 103 KEGTPVFLVGG-KPEVLAQTEAKLRTQW-NV------NIVGSQDGYFT-PEQRQALFERIHASGAKIVTVAMGSPKQEIF 173 (243)
T ss_pred hcCCeEEEECC-CHHHHHHHHHHHHHHh-CC------EEEEEeCCCCC-HHHHHHHHHHHHhcCCCEEEEECCCcHHHHH
Confidence 45689999944 4448888999888999 64 34334567775 5556778888877764 99988988875445
Q ss_pred HHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016579 174 AKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 174 l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+.+.....+.+.+=-.|-.++.++......|
T Consensus 174 ~~~~~~~~~~~v~~gvGg~fD~~aG~~~RAP 204 (243)
T PRK03692 174 MRDCRLVYPDALYMGVGGTYDVFTGHVKRAP 204 (243)
T ss_pred HHHHHHhCCCCEEEEeCeEEEEecCCcCcCc
Confidence 5555555566654445666666665444444
No 215
>PRK13973 thymidylate kinase; Provisional
Probab=59.80 E-value=29 Score=32.18 Aligned_cols=74 Identities=23% Similarity=0.192 Sum_probs=42.7
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCC--H---HHHHHHHHHHHHHhhhC-CCCcEEeCCCccHHHHHH
Q 016579 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSE--M---DYVREELEFAGRIFAQN-PVWPVIEVTGKAIEETAA 365 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~--~---e~I~~EL~~A~~lf~k~-~g~pvIDVT~kSIEEtAa 365 (387)
.+..+|-|+++|+.+.+-=.+|. -.+ ....|-. . ++++++-. ++..+. ..|-+||. .+++||+.+
T Consensus 128 ~PD~vi~Ldv~~e~~~~Rl~~R~----~~~-~~~~~e~~~~~~~~~~~~~y~---~l~~~~~~~~~~Ida-~~~~e~V~~ 198 (213)
T PRK13973 128 MPDLTLILDIPAEVGLERAAKRR----GSD-TPDRFEKEDLAFHEKRREAFL---QIAAQEPERCVVIDA-TASPEAVAA 198 (213)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcc----CCC-ccCchhhchHHHHHHHHHHHH---HHHHhCCCcEEEEcC-CCCHHHHHH
Confidence 46779999999998765323332 110 0112321 1 22333222 222221 15889995 579999999
Q ss_pred HHHHHHhcc
Q 016579 366 VVLRLYHDR 374 (387)
Q Consensus 366 ~Il~~~~~r 374 (387)
.|.+++...
T Consensus 199 ~I~~~i~~~ 207 (213)
T PRK13973 199 EIWAAVDQR 207 (213)
T ss_pred HHHHHHHHH
Confidence 999988654
No 216
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=59.77 E-value=5.5 Score=36.63 Aligned_cols=21 Identities=33% Similarity=0.262 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
+.|.|.|+||||-+++.||..
T Consensus 22 ~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999843
No 217
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=59.65 E-value=7.6 Score=35.20 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=27.5
Q ss_pred CCCCcCcEE-EEccCCCCCChhhHHhh----hcCceeeeccc
Q 016579 242 QNLQKADII-LSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (387)
Q Consensus 242 ~~L~~ADIV-LvGVSRTsKTPlSmYLA----~~GyKVAN~PL 278 (387)
.|+..-.++ |.|.++||||=+|+-+| ..|.+|+-+-.
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 355555554 67999999999999988 34677776655
No 218
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=59.61 E-value=16 Score=36.12 Aligned_cols=93 Identities=16% Similarity=0.289 Sum_probs=58.7
Q ss_pred HHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhh
Q 016579 150 IIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAI 229 (387)
Q Consensus 150 ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAI 229 (387)
.++.. ..+.+||..+.++.+. +.|.++||.++|.+.- +.+ -. ...+...+. |+
T Consensus 87 ~l~~l-~~~~~v~~G~~~~~~~----~~~~~~gi~~~~~~~~--~~~----~~------------~ns~~~aeg----av 139 (296)
T PRK08306 87 LLELT-PEHCTIFSGIANPYLK----ELAKETNRKLVELFER--DDV----AI------------LNSIPTAEG----AI 139 (296)
T ss_pred HHHhc-CCCCEEEEecCCHHHH----HHHHHCCCeEEEEecc--chh----hh------------hccHhHHHH----HH
Confidence 34443 4557788899999855 5678999999997753 111 00 011222233 34
Q ss_pred hhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016579 230 EFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 230 eFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
..++++- +.++..+-+.++|..++|++ +..+|..+|.+|.
T Consensus 140 ~~a~~~~----~~~l~g~kvlViG~G~iG~~-~a~~L~~~Ga~V~ 179 (296)
T PRK08306 140 MMAIEHT----PITIHGSNVLVLGFGRTGMT-LARTLKALGANVT 179 (296)
T ss_pred HHHHHhC----CCCCCCCEEEEECCcHHHHH-HHHHHHHCCCEEE
Confidence 3444432 24566788999999999965 7777888897654
No 219
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=59.56 E-value=6.3 Score=39.96 Aligned_cols=122 Identities=20% Similarity=0.180 Sum_probs=62.6
Q ss_pred eccccCCHHHHHHHHHHHHhCCC-EEEE----------EcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCC
Q 016579 137 LFSGIDDVEQLMVIIKQAAKDGA-MLVY----------TLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPS 205 (387)
Q Consensus 137 ~~p~V~t~e~l~~ii~~a~~~~~-iV~~----------Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~ 205 (387)
-.||| +.+.++.+++.+...++ +++. .+...++...+.+ +-..|. ..++..+.+ ++....
T Consensus 102 D~P~i-~~~~i~~L~~~~~~~~~~~v~~~~g~~g~Pl~aiy~~~~~~~l~~-~l~~G~------~~l~~~l~~-~~~~~v 172 (366)
T PRK14489 102 DTPFL-PENLVKRLSKALAIEGADIAVPHDGERAHPLFALYHRSCLPALRR-YLAEGE------RRLFDFFQR-QRVRYV 172 (366)
T ss_pred CcCCC-CHHHHHHHHHHhhccCCeEEEEecCCCceeeEEEEcHHHHHHHHH-HHHhCC------ccHHHHHHh-CCcEEE
Confidence 36899 57788888886543332 3321 1345566666655 333332 122222221 111111
Q ss_pred CCCCCCCCCCCCCc--HHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016579 206 GLPRGAPGRNFPLS--EEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (387)
Q Consensus 206 ~~~~~~pG~~~~ld--~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~P 277 (387)
..+. .++....+| ++|- +..+ --||.-... .. =|-++|-|+||||-+.--|. ++||||+=|=
T Consensus 173 ~~~~-~~~~~~nINTpeDl~-~l~~------~~~~~~~~~-~~-~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK 240 (366)
T PRK14489 173 DLST-QKDAFFNVNTPEDLE-QLRA------IPDGTTTGA-PP-LLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK 240 (366)
T ss_pred eccC-CccccccCCCHHHHH-HHhh------hhhcccCCC-cc-EEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 1000 123445556 6663 3322 223311111 12 27789999999999977655 7899998654
No 220
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=59.49 E-value=5.3 Score=32.27 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyK 272 (387)
|+++|-+++|||-|.-+|.+.-+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 799999999999999999966544
No 221
>PRK05595 replicative DNA helicase; Provisional
Probab=59.45 E-value=79 Score=32.92 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=58.1
Q ss_pred CCCCcCcEEE-EccCCCCCChhhHHhhhc-CceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhc--
Q 016579 242 QNLQKADIIL-SGVSRTGKTPLSIYLAQK-GYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSL-- 317 (387)
Q Consensus 242 ~~L~~ADIVL-vGVSRTsKTPlSmYLA~~-GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~l-- 317 (387)
.||..-|+|+ -|-++.|||=+++.+|.. +.+ +-.+--+|-|.++++.|.. |+-+.
T Consensus 196 ~G~~~g~liviaarpg~GKT~~al~ia~~~a~~-----------------~g~~vl~fSlEms~~~l~~----R~~a~~~ 254 (444)
T PRK05595 196 SGFQKGDMILIAARPSMGKTTFALNIAEYAALR-----------------EGKSVAIFSLEMSKEQLAY----KLLCSEA 254 (444)
T ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHHHH-----------------cCCcEEEEecCCCHHHHHH----HHHHHhc
Confidence 5788888876 677899999999999843 221 0011125677777777763 33211
Q ss_pred CCCCC--CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016579 318 GFRDE--IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 318 Gl~~~--~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
|++.. ......+. . ...+..|-.-+.+. .+-+-|..+.+++|+.+.+.++.
T Consensus 255 ~v~~~~~~~~~l~~~-e-~~~~~~~~~~l~~~-~l~i~d~~~~t~~~i~~~~r~~~ 307 (444)
T PRK05595 255 NVDMLRLRTGNLEDK-D-WENIARASGPLAAA-KIFIDDTAGVSVMEMRSKCRRLK 307 (444)
T ss_pred CCCHHHHhcCCCCHH-H-HHHHHHHHHHHhcC-CEEEECCCCCCHHHHHHHHHHHH
Confidence 22100 00001111 1 12233333334443 56666777888888888776654
No 222
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=59.21 E-value=7.7 Score=35.73 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=27.6
Q ss_pred CCCCcCcE-EEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016579 242 QNLQKADI-ILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (387)
Q Consensus 242 ~~L~~ADI-VLvGVSRTsKTPlSmYLA----~~GyKVAN~PL 278 (387)
.|+..-.+ .|.|.++||||-+++-|| ..|.+|.-+-.
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 46666655 577999999999999999 34677765543
No 223
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.17 E-value=19 Score=37.30 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
--++|+|++++|||=|..=||.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998884
No 224
>PHA02244 ATPase-like protein
Probab=59.05 E-value=5 Score=41.89 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.3
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016579 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.|.|.|.++||||-+..+||+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999954
No 225
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=59.04 E-value=7.6 Score=36.82 Aligned_cols=31 Identities=45% Similarity=0.598 Sum_probs=24.4
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016579 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~P 277 (387)
.=++|+|.++||||=+|+.++ +.|.++.-+.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 457889999999999987654 4677876665
No 226
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=58.80 E-value=25 Score=35.01 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=45.0
Q ss_pred EEEEccCCCCCChhh----HHhhhcCceeeeccccC--------CCCCCccccccC-CCcEEEEecChhHHHHHHHHHH
Q 016579 249 IILSGVSRTGKTPLS----IYLAQKGYKVANVPIVM--------GVELPKSLFQVD-PEKVFGLTINPLVLQSIRKARA 314 (387)
Q Consensus 249 IVLvGVSRTsKTPlS----mYLA~~GyKVAN~PLVp--------~v~lP~eLf~v~-~~KI~GLTIdPerL~~IR~eRl 314 (387)
|+..|-=++|||=+| +++|++|.||--+=+=| +.++..+..++. ...++++.|||+...+=..++.
T Consensus 4 ~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~~~ 82 (305)
T PF02374_consen 4 LFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWEEV 82 (305)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHHHH
T ss_pred EEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHHHH
Confidence 577899999999876 78889999998876655 566777777776 2458999999987655444444
No 227
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=58.70 E-value=11 Score=38.94 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=30.5
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
-|||.|||-+.+|||=|-=-|.+.-.+|+|||.+-
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT 193 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTT 193 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCc
Confidence 48999999999999999888886557999999764
No 228
>PRK07283 hypothetical protein; Provisional
Probab=58.67 E-value=45 Score=27.96 Aligned_cols=41 Identities=12% Similarity=0.303 Sum_probs=35.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCC
Q 016579 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGV 202 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~ 202 (387)
+|+.+=+.++.++.+.+.|+.++||++.++ -...|...+|.
T Consensus 38 Vi~A~Das~~~~kk~~~~~~~~~Vp~~~~~--t~~eLG~a~Gk 78 (98)
T PRK07283 38 VFLANDAGPNLTKKVTDKSNYYQVEVSTVF--STLELSAAVGK 78 (98)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEeC--CHHHHHHHhCC
Confidence 556667789999999999999999999987 45789999997
No 229
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=58.61 E-value=4.6 Score=41.37 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=16.4
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016579 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
+||||+|+||||=|-==+|
T Consensus 32 ~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8999999999998766555
No 230
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=58.56 E-value=66 Score=31.53 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=46.0
Q ss_pred EEEecChhHHHHHHHHH-HhhcCCCCCCCCCCCCHHHHHHHHHHHHHH--------hhhCCCCcEEeCCCccHHHHHHHH
Q 016579 297 FGLTINPLVLQSIRKAR-ARSLGFRDEIRSNYSEMDYVREELEFAGRI--------FAQNPVWPVIEVTGKAIEETAAVV 367 (387)
Q Consensus 297 ~GLTIdPerL~~IR~eR-lk~lGl~~~~~S~YA~~e~I~~EL~~A~~l--------f~k~~g~pvIDVT~kSIEEtAa~I 367 (387)
|=||.+|+. |-+| ++.++- .......|++.+||..=... ++...+.-+||+|++||||+...|
T Consensus 142 iFLtAS~e~----RA~RR~~q~~~----~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~i 213 (222)
T COG0283 142 IFLTASPEE----RAERRYKQLQA----KGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKI 213 (222)
T ss_pred EEEeCCHHH----HHHHHHHHHHh----ccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHH
Confidence 459999964 5443 344432 22345588898888642221 111235679999999999999999
Q ss_pred HHHHh
Q 016579 368 LRLYH 372 (387)
Q Consensus 368 l~~~~ 372 (387)
+++++
T Consensus 214 l~~~~ 218 (222)
T COG0283 214 LELIR 218 (222)
T ss_pred HHHHH
Confidence 99997
No 231
>PRK05541 adenylylsulfate kinase; Provisional
Probab=58.46 E-value=5.4 Score=35.33 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=20.9
Q ss_pred CCcEEeCCC-ccHHHHHHHHHHHHhcc
Q 016579 349 VWPVIEVTG-KAIEETAAVVLRLYHDR 374 (387)
Q Consensus 349 g~pvIDVT~-kSIEEtAa~Il~~~~~r 374 (387)
.--+||+.+ ++.||.+..|++.+.++
T Consensus 147 Ad~vI~~~~~~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 147 ADLVIDNSCRTSLDEKVDLILNKLKLR 173 (176)
T ss_pred CCEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 346888876 69999999999988654
No 232
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.34 E-value=53 Score=33.09 Aligned_cols=148 Identities=16% Similarity=0.234 Sum_probs=86.2
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
..++.++.|.|.-. ....++.-...+..+ +++++.+.||--.+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 38 ~P~Laii~vg~d~a--S~~Yv~~k~k~~~~~----Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~ 111 (287)
T PRK14176 38 TPGLATILVGDDPA--SKMYVRLKHKACERV----GIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLD 111 (287)
T ss_pred CCeEEEEEECCCcc--hHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCC
Confidence 44677888876553 344555555555443 46788999999889999999999885543 66665 4421 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.+....-+++| |-|.|. +..| ++|.+. -.| ..| .||=..++|- |. +|...+
T Consensus 112 ~~~i~~~I~p~KDV---DGl~~~N~g~l--~~g~~~-~~P-cTp--------------~av~~ll~~~-~i---~l~Gk~ 166 (287)
T PRK14176 112 PQEAMEAIDPAKDA---DGFHPYNMGKL--MIGDEG-LVP-CTP--------------HGVIRALEEY-GV---DIEGKN 166 (287)
T ss_pred HHHHHhccCccccc---cccChhhhhhH--hcCCCC-CCC-CcH--------------HHHHHHHHHc-CC---CCCCCE
Confidence 22234433333333 555553 1222 133221 111 122 2333333331 12 677789
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
+++||=|++-=-|++++|.++|..|
T Consensus 167 vvViGrs~iVGkPla~lL~~~~atV 191 (287)
T PRK14176 167 AVIVGHSNVVGKPMAAMLLNRNATV 191 (287)
T ss_pred EEEECCCcccHHHHHHHHHHCCCEE
Confidence 9999999955559999999988554
No 233
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=58.06 E-value=25 Score=30.38 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHh--CC-CEEEEEcCC------------HHHHHHHHHHHHHcCCCEeecchHH
Q 016579 145 EQLMVIIKQAAK--DG-AMLVYTLAD------------PSMAESAKKACELWGIPSTDVLGPI 192 (387)
Q Consensus 145 e~l~~ii~~a~~--~~-~iV~~Tlvd------------~elr~~l~~~~~~~gi~~vDllgp~ 192 (387)
+.+.++++.+.+ .+ .+|+.|+.. .++.+.+++.|++.|++++|+...+
T Consensus 72 ~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~~~~ 134 (169)
T cd01828 72 ANYRTILEKLRKHFPNIKIVVQSILPVGELKSIPNEQIEELNRQLAQLAQQEGVTFLDLWAVF 134 (169)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCCcCccCcCCHHHHHHHHHHHHHHHHHCCCEEEechhhh
Confidence 445555666644 33 366655411 3477789999999999999998655
No 234
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.02 E-value=89 Score=31.42 Aligned_cols=149 Identities=19% Similarity=0.239 Sum_probs=87.1
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
...+.++.|.|.-+ ....++.-...+..+ +++++.+.+|--.+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 32 ~P~Laii~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~ 105 (284)
T PRK14190 32 VPGLAVILVGDDPA--SHSYVRGKKKAAEKV----GIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHID 105 (284)
T ss_pred CCeEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 34567777776654 344445444444432 36789999998888999999999886554 55554 4431 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.+..-.-+++| |-|.|. +..| +.|.+. -.| ..| .|+=.-++|= |. +|...+
T Consensus 106 ~~~i~~~I~p~KDV---DGl~~~n~g~l--~~~~~~-~~P-cTp--------------~av~~lL~~~-~i---~l~Gk~ 160 (284)
T PRK14190 106 EKAVIERISPEKDV---DGFHPINVGRM--MLGQDT-FLP-CTP--------------HGILELLKEY-NI---DISGKH 160 (284)
T ss_pred HHHHHhcCCccccc---cccCHhhHHHH--hcCCCC-CCC-CCH--------------HHHHHHHHHc-CC---CCCCCE
Confidence 22233333334333 556554 2222 233321 111 123 2222222221 12 577789
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
+++||=|.+==-|++++|.++|..|-
T Consensus 161 vvViGrS~iVG~Pla~lL~~~~atVt 186 (284)
T PRK14190 161 VVVVGRSNIVGKPVGQLLLNENATVT 186 (284)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEEE
Confidence 99999999999999999999986664
No 235
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=57.98 E-value=50 Score=28.94 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=34.6
Q ss_pred EEEEEcCCH-HHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016579 160 MLVYTLADP-SMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (387)
Q Consensus 160 iV~~Tlvd~-elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~ 203 (387)
+|+..=++| ++.+.+...|++++||++.+..- ..|...+|.+
T Consensus 50 VilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk--~eLG~a~Gk~ 92 (122)
T PRK04175 50 VVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK--KDLGKAAGLE 92 (122)
T ss_pred EEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH--HHHHHHhCCC
Confidence 555666666 68899999999999999887654 8899999987
No 236
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.77 E-value=96 Score=31.32 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=86.2
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
...+.++.|.|.-+ ....++.-...+..+ +++++.+.||---+++++.+.|+++.++. +|+++ =|-. -+
T Consensus 32 ~P~LaiI~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id 105 (288)
T PRK14171 32 SPKLAIVLVGDNPA--SIIYVKNKIKNAHKI----GIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSID 105 (288)
T ss_pred CCeEEEEEeCCCcc--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCC
Confidence 34577888877654 455555555555443 46788999998889999999999885554 66665 3321 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcE
Q 016579 170 MAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADI 249 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADI 249 (387)
-.+.++.-.-+++| |-|.|. +.-.-+.|..+.-.| ..|- . =|+=++| | |. +|.-.++
T Consensus 106 ~~~i~~~I~p~KDV---DGl~~~-N~g~l~~g~~~~~~P-cTp~-------a---v~~lL~~---y--~i---~l~GK~v 162 (288)
T PRK14171 106 KNKILSAVSPSKDI---DGFHPL-NVGYLHSGISQGFIP-CTAL-------G---CLAVIKK---Y--EP---NLTGKNV 162 (288)
T ss_pred HHHHHhccCccccc---ccCCcc-chhhhhcCCCCCCcC-CCHH-------H---HHHHHHH---h--CC---CCCCCEE
Confidence 22334433334433 555554 111111232111101 1221 1 1111121 1 22 4666789
Q ss_pred EEEccCCCCCChhhHHhhhcCcee
Q 016579 250 ILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 250 VLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
++||=|.+==-|++++|.++|.-|
T Consensus 163 vViGrS~iVGkPla~lL~~~~ATV 186 (288)
T PRK14171 163 VIIGRSNIVGKPLSALLLKENCSV 186 (288)
T ss_pred EEECCCCcchHHHHHHHHHCCCEE
Confidence 999999999999999999988555
No 237
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=57.61 E-value=30 Score=30.06 Aligned_cols=27 Identities=11% Similarity=0.184 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCCEeecchHHHH
Q 016579 168 PSMAESAKKACELWGIPSTDVLGPITE 194 (387)
Q Consensus 168 ~elr~~l~~~~~~~gi~~vDllgp~i~ 194 (387)
.++.+.+++.|+++|++++|+..++-.
T Consensus 123 ~~~~~~~~~~a~~~~v~~vd~~~~~~~ 149 (189)
T cd01825 123 DAVIAAQRRVAKEEGIAFWDLYAAMGG 149 (189)
T ss_pred HHHHHHHHHHHHHcCCeEEeHHHHhCC
Confidence 356788899999999999999887643
No 238
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=57.59 E-value=8 Score=35.88 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=25.7
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~ 276 (387)
|.|.|-++||||=.|-+|+.+|+.+-|-
T Consensus 4 igitG~igsGKst~~~~l~~~g~~vid~ 31 (200)
T PRK14734 4 IGLTGGIGSGKSTVADLLSSEGFLIVDA 31 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCeEEeC
Confidence 7899999999999999999999988765
No 239
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=57.55 E-value=5.5 Score=37.31 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.0
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016579 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.|+|+|.|.+|||=|-..|.+.
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHS
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 4899999999999999999865
No 240
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.41 E-value=1.5e+02 Score=29.88 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=85.3
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCCHHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLADPSM 170 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd~el 170 (387)
..++.++.|.|.-. ....++.-..++..+ +++++.+.||---+++++.+.|+++.++. +|+++ -|- +.+
T Consensus 31 ~P~Laii~vgdd~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP-~~i 103 (281)
T PRK14183 31 VPGLAVILVGDDPA--SHTYVKMKAKACDRV----GIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLP-KHI 103 (281)
T ss_pred CCeEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCC-CCC
Confidence 45677888876654 344455555555433 35688889988889999999999886553 56655 442 222
Q ss_pred --HHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 171 --AESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 171 --r~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
.+.++...-+++| |-|.|. +.-.-+.|.+. -.| ..| .|+=.=++|- |. +|...+
T Consensus 104 ~~~~i~~~I~p~KDV---DGl~~~-n~g~l~~g~~~-~~P-cTp--------------~avi~lL~~~-~i---~l~Gk~ 159 (281)
T PRK14183 104 DTTKILEAIDPKKDV---DGFHPY-NVGRLVTGLDG-FVP-CTP--------------LGVMELLEEY-EI---DVKGKD 159 (281)
T ss_pred CHHHHHhccCchhcc---cccChh-hhhHHhcCCCC-CCC-CcH--------------HHHHHHHHHc-CC---CCCCCE
Confidence 2233333334333 656653 11111234221 111 122 1111111111 12 667778
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
+++||=|.+==.|++++|.++|.-|
T Consensus 160 vvViGrS~~VG~Pla~lL~~~~AtV 184 (281)
T PRK14183 160 VCVVGASNIVGKPMAALLLNANATV 184 (281)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEE
Confidence 9999999998899999999988544
No 241
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.32 E-value=56 Score=33.04 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=84.7
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEEcCCHHH-
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYTLADPSM- 170 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~Tlvd~el- 170 (387)
...+.++.|.|.-+ +...++.-...+..+ +++++.+.||--.+.+++.+.|+++.++. +|+++.=.-+.+
T Consensus 32 ~p~LaiI~vgdd~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~ 105 (297)
T PRK14186 32 PPGLAVLRVGDDPA--SAVYVRNKEKACARV----GIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLD 105 (297)
T ss_pred CceEEEEEeCCChH--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 44577888887764 334444444444332 35788889987788999999999885544 666653222222
Q ss_pred -HHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 171 -AESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 171 -r~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
.+.+..-.-+++ ||-|.|. +..| +.|... -.| ..| .||=-=|+|- |. +|.-.+
T Consensus 106 ~~~i~~~I~p~KD---VDGl~~~n~g~l--~~~~~~-~~P-cTp--------------~aii~lL~~~-~i---~l~Gk~ 160 (297)
T PRK14186 106 EVPLLHAIDPDKD---ADGLHPLNLGRL--VKGEPG-LRS-CTP--------------AGVMRLLRSQ-QI---DIAGKK 160 (297)
T ss_pred HHHHHhccCcccC---cccCChhhHHHH--hCCCCC-CCC-CCH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 233333333333 3556653 2222 233221 111 122 1111111111 23 555678
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
+++||=|.+==-|++++|.++|..|
T Consensus 161 vvVIGrS~iVGkPla~lL~~~~atV 185 (297)
T PRK14186 161 AVVVGRSILVGKPLALMLLAANATV 185 (297)
T ss_pred EEEECCCccchHHHHHHHHHCCCEE
Confidence 9999999998889999999998666
No 242
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=57.27 E-value=7.5 Score=41.41 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~P 277 (387)
|-++|-|.||||=|+--|. ++||||+=|=
T Consensus 4 i~IvG~sgSGKTTLiekLI~~L~~rG~rVavIK 36 (452)
T PRK14495 4 YGIIGWKDAGKTGLVERLVAAIAARGFSVSTVK 36 (452)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4589999999999987665 7899999743
No 243
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=57.18 E-value=2e+02 Score=29.00 Aligned_cols=200 Identities=20% Similarity=0.219 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhC-C-CE---EEEEcCC-HHHHHHHHHHHHHcC
Q 016579 109 WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKD-G-AM---LVYTLAD-PSMAESAKKACELWG 182 (387)
Q Consensus 109 eTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~-~-~i---V~~Tlvd-~elr~~l~~~~~~~g 182 (387)
.-+.++.+.+.++|+.. ...|++=.+---+..++.++... + ++ -+-|-.. +++-++..+.|+++|
T Consensus 6 ~esi~ilRe~~~~f~~~---------vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~g 76 (294)
T TIGR02039 6 SEAIHIIREVAAEFERP---------VMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYG 76 (294)
T ss_pred HHHHHHHHHHHHhcCCc---------EEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 34678889999999752 34688766665666667666332 2 22 2334333 889999999999999
Q ss_pred CCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEcc------CC
Q 016579 183 IPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGV------SR 256 (387)
Q Consensus 183 i~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGV------SR 256 (387)
+.++=+--.- ....|..|- ..|.. . -..-.++++++=|++. ...|+++.|. +|
T Consensus 77 l~l~v~~~~~----~~~~g~~~~-----~~~~~-~--~c~vlK~~pL~~al~e---------~g~da~itG~RRDEe~sR 135 (294)
T TIGR02039 77 LRLIVHSNEE----GIADGINPF-----TEGSA-L--HTDIMKTEALRQALDK---------NQFDAAFGGARRDEEKSR 135 (294)
T ss_pred CCEEEEechh----hhhcCcccc-----ccChH-H--HhhHHHHHHHHHHHHH---------cCCCEEEecCChhhhhHh
Confidence 9776543221 112344332 11100 0 1244566788888753 3568899996 44
Q ss_pred CCCChhhHHhhh---------------------c--CceeeeccccC-------------CCCCCccccccCCCcEE---
Q 016579 257 TGKTPLSIYLAQ---------------------K--GYKVANVPIVM-------------GVELPKSLFQVDPEKVF--- 297 (387)
Q Consensus 257 TsKTPlSmYLA~---------------------~--GyKVAN~PLVp-------------~v~lP~eLf~v~~~KI~--- 297 (387)
..-...|+.... . -+|| -||.. ++|+++-.|.. .+.+|
T Consensus 136 ake~i~s~r~~~~~wD~~~q~Pelw~~~~~~~~~g~~~RV--~PL~~WTe~DVW~YI~~~~IP~~pLY~~~-~r~~~~r~ 212 (294)
T TIGR02039 136 AKERIFSFRNAFHQWDPKKQRPELWNLYNGRISKGESVRV--FPLSNWTELDIWRYIAAENIPIVPLYFAA-KRPVVQRD 212 (294)
T ss_pred hcCceeeccccccccCccccCchhhhccccccccCCcEEE--echhhCCHHHHHHHHHHcCCCCCcCeecC-ccceeecc
Confidence 432223332211 1 1455 27664 67776655542 11121
Q ss_pred E---------EecChhHHHHHHHHHHhhcCC---CCCCCCCCCCHHHHHHHHHHHH
Q 016579 298 G---------LTINPLVLQSIRKARARSLGF---RDEIRSNYSEMDYVREELEFAG 341 (387)
Q Consensus 298 G---------LTIdPerL~~IR~eRlk~lGl---~~~~~S~YA~~e~I~~EL~~A~ 341 (387)
| +...|.--.+.|.-|.++||- +....|.=++.+.|-+|+..++
T Consensus 213 g~~~~~~~~~~~~~~~~~~~~~~~r~rt~g~~~~t~~~~s~a~~~~~~~~e~~~~~ 268 (294)
T TIGR02039 213 GMLIMVDDVRMPLAPGEVVKERMVRFRTLGCYPLTGAIESDAATVEEIIAETAAAR 268 (294)
T ss_pred CeEEecCccccCCCCCCcccccceeecccCcccCCCcccCCCCCHHHHHHHHHhcc
Confidence 2 133444455667888899983 3334577788888888887754
No 244
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=57.14 E-value=20 Score=31.12 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=36.2
Q ss_pred ccCCHHHHHHHHHHHHhCCCEEE-EEcCCHH---HHHHHHHHHHH----cCCCEeecc--hHHHHHHHHHhCCCC
Q 016579 140 GIDDVEQLMVIIKQAAKDGAMLV-YTLADPS---MAESAKKACEL----WGIPSTDVL--GPITEAIASHLGVSP 204 (387)
Q Consensus 140 ~V~t~e~l~~ii~~a~~~~~iV~-~Tlvd~e---lr~~l~~~~~~----~gi~~vDll--gp~i~~le~~lG~~p 204 (387)
-+.|.+++++++++......+|| |+..=+- .-+.++++... ..+.++||+ .|+=+.+++.||+.=
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H 77 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH 77 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT---
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc
Confidence 47899999999988655545555 5543222 22223333332 457889997 589999999999974
No 245
>PRK00698 tmk thymidylate kinase; Validated
Probab=57.13 E-value=73 Score=28.36 Aligned_cols=73 Identities=22% Similarity=0.250 Sum_probs=39.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHH-HHHHHhhhC-CCCcEEeCCCccHHHHHHHHHHH
Q 016579 293 PEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELE-FAGRIFAQN-PVWPVIEVTGKAIEETAAVVLRL 370 (387)
Q Consensus 293 ~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~-~A~~lf~k~-~g~pvIDVT~kSIEEtAa~Il~~ 370 (387)
+..+|-|+.+|+.+.+ |++.-|-.+ .....+.+ ..+.+. +-+.++.+. ..|-+||.+ .++||+..+|.++
T Consensus 128 pd~~i~l~~~~~~~~~----Rl~~R~~~~--~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~Id~~-~~~e~v~~~i~~~ 199 (205)
T PRK00698 128 PDLTLYLDVPPEVGLA----RIRARGELD--RIEQEGLD-FFERVREGYLELAEKEPERIVVIDAS-QSLEEVHEDILAV 199 (205)
T ss_pred CCEEEEEeCCHHHHHH----HHHhcCCcc--hhhhhhHH-HHHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHH
Confidence 3468999999987654 443222110 01011111 111222 222333221 247789976 6899999999998
Q ss_pred Hhc
Q 016579 371 YHD 373 (387)
Q Consensus 371 ~~~ 373 (387)
+.+
T Consensus 200 i~~ 202 (205)
T PRK00698 200 IKA 202 (205)
T ss_pred HHH
Confidence 864
No 246
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=57.12 E-value=7.1 Score=36.85 Aligned_cols=20 Identities=45% Similarity=0.667 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|||+|.++||||=++-.||.
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999983
No 247
>PRK06696 uridine kinase; Validated
Probab=57.10 E-value=8.1 Score=36.00 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=22.3
Q ss_pred EEEEccCCCCCChhhHHhh-hc---Cceeeecc
Q 016579 249 IILSGVSRTGKTPLSIYLA-QK---GYKVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~---GyKVAN~P 277 (387)
|.+-|.|+||||-++--|| +. |.+|.-++
T Consensus 25 I~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 25 VAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 6677899999999999999 33 66665433
No 248
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=57.01 E-value=5.8 Score=32.92 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|.|-|.+++|||=++-+||..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999954
No 249
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=56.94 E-value=9.2 Score=37.73 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=20.8
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhhh
Q 016579 243 NLQKADII-LSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 243 ~L~~ADIV-LvGVSRTsKTPlSmYLA~ 268 (387)
|+..=.|+ |.|.++||||-+|+.||-
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~ 124 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAV 124 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHH
Confidence 44444555 889999999999999993
No 250
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=56.78 E-value=82 Score=27.03 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEcC---------CHHHHHHHHHHHHHcCCCEeecc
Q 016579 144 VEQLMVIIKQAAKDG-AMLVYTLA---------DPSMAESAKKACELWGIPSTDVL 189 (387)
Q Consensus 144 ~e~l~~ii~~a~~~~-~iV~~Tlv---------d~elr~~l~~~~~~~gi~~vDll 189 (387)
.+.+.++++.+.+.+ .+|+.++. ...+.+.+++.|++++++++|++
T Consensus 87 ~~~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~d~~ 142 (177)
T cd01822 87 RANLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLVPFF 142 (177)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEechH
Confidence 345666777776555 46666542 24678899999999999999974
No 251
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=56.48 E-value=22 Score=32.42 Aligned_cols=72 Identities=25% Similarity=0.301 Sum_probs=49.8
Q ss_pred HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeec
Q 016579 111 AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDV 188 (387)
Q Consensus 111 Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vDl 188 (387)
...-+++++.+.. +.+.+. ++--.+.++-.+.++++...+ +||+.+.-...+...+++ |.+.|||+|-+
T Consensus 16 ~~~g~~~~a~~~g-------~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~-~~~~gIpvv~~ 86 (257)
T PF13407_consen 16 VIKGAKAAAKELG-------YEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEK-AKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHT-------CEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHH-HHHTTSEEEEE
T ss_pred HHHHHHHHHHHcC-------CEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHH-HhhcCceEEEE
Confidence 3344555666653 234343 577777777778888876665 688887777778877765 67789999987
Q ss_pred chH
Q 016579 189 LGP 191 (387)
Q Consensus 189 lgp 191 (387)
-.+
T Consensus 87 d~~ 89 (257)
T PF13407_consen 87 DSD 89 (257)
T ss_dssp SST
T ss_pred ecc
Confidence 666
No 252
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=56.46 E-value=23 Score=34.84 Aligned_cols=118 Identities=18% Similarity=0.302 Sum_probs=75.8
Q ss_pred eEEeccccCCHHH--HHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHH--HHHHHHhCCCC---
Q 016579 134 NTHLFSGIDDVEQ--LMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPIT--EAIASHLGVSP--- 204 (387)
Q Consensus 134 ~~~~~p~V~t~e~--l~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i--~~le~~lG~~p--- 204 (387)
.+..+.|.|..-+ +++.++++++.| ++++.=|--.| .+.+.+.|+++|+..+-++.|-. +.|........
T Consensus 93 p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee-~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFI 171 (263)
T CHL00200 93 PIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEE-SDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCI 171 (263)
T ss_pred CEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHH-HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcE
Confidence 3456777776544 466788877766 68888887655 44566789999999999999986 56666666554
Q ss_pred ---CCCCCCCCCCCCCCc---HHHHhhhhhh-hhhhhCCCCCC-CCCCCc-----CcEEEEcc
Q 016579 205 ---SGLPRGAPGRNFPLS---EEYFRRIEAI-EFTIKQDDGAL-PQNLQK-----ADIILSGV 254 (387)
Q Consensus 205 ---~~~~~~~pG~~~~ld---~~YF~RIeAI-eFavkhDDG~~-~~~L~~-----ADIVLvGV 254 (387)
+. .+.-|....+. .+|.+||... +-=|.-+=|.+ +++..+ ||.|+||=
T Consensus 172 Y~vS~--~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 172 YLVST--TGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred EEEcC--CCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 11 12445443443 6788888852 11133444555 433332 89999993
No 253
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=56.45 E-value=34 Score=35.99 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=25.6
Q ss_pred CCCCcCcEEE-EccCCCCCChhhHHhhhc----Cceeeecc
Q 016579 242 QNLQKADIIL-SGVSRTGKTPLSIYLAQK----GYKVANVP 277 (387)
Q Consensus 242 ~~L~~ADIVL-vGVSRTsKTPlSmYLA~~----GyKVAN~P 277 (387)
.|+..-.++| .|.++||||.+++.++.. |.+|.-+-
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis 308 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA 308 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3566556654 699999999999998843 55555553
No 254
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=56.43 E-value=7.4 Score=40.57 Aligned_cols=119 Identities=24% Similarity=0.236 Sum_probs=64.0
Q ss_pred hhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHHhhhc-Cceee-ecc---ccC-------------CCCCC--
Q 016579 227 EAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIYLAQK-GYKVA-NVP---IVM-------------GVELP-- 285 (387)
Q Consensus 227 eAIeFavkhDDG~~~~~L~~AD-IVLvGVSRTsKTPlSmYLA~~-GyKVA-N~P---LVp-------------~v~lP-- 285 (387)
.|.-|+=++=+ +.-+.--- |.|=|+.+||||-||==|||| .++.- -|+ |+. -..+=
T Consensus 160 s~l~fsek~vn---tnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~k 236 (423)
T KOG0744|consen 160 SALLFSEKKVN---TNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAK 236 (423)
T ss_pred HHHHHHhcCCC---CceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHH
Confidence 34555555444 44333333 555699999999999999976 45521 111 111 11222
Q ss_pred -----ccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHHHhhhCCCCcEEeCCC
Q 016579 286 -----KSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYS-EMDYVREELEFAGRIFAQNPVWPVIEVTG 357 (387)
Q Consensus 286 -----~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA-~~e~I~~EL~~A~~lf~k~~g~pvIDVT~ 357 (387)
++|.+.+...||-|.=..|-|..-|+.=+ .++.=+ .+.-|..=|-+-.+|=+. ++.-+.-+++
T Consensus 237 mF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~--------S~~EpsDaIRvVNalLTQlDrlK~~-~NvliL~TSN 305 (423)
T KOG0744|consen 237 MFQKIQELVEDRGNLVFVLIDEVESLAAARTSAS--------SRNEPSDAIRVVNALLTQLDRLKRY-PNVLILATSN 305 (423)
T ss_pred HHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhh--------cCCCCchHHHHHHHHHHHHHHhccC-CCEEEEeccc
Confidence 23445444556666666778888775433 122222 334455556666666444 4655554443
No 255
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=56.24 E-value=7.8 Score=39.54 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=34.3
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeeccccCC
Q 016579 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVMG 281 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLVp~ 281 (387)
+.+|--++.+. -.|+|.|+++||||=+...|| ..|+....|=+.+.
T Consensus 54 ~~~vl~~l~~~----------~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~ 100 (327)
T TIGR01650 54 TKAICAGFAYD----------RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSH 100 (327)
T ss_pred HHHHHHHHhcC----------CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34566666542 249999999999999999999 67877776655553
No 256
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=56.12 E-value=28 Score=35.42 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHHHHHHHHHcCCCEee---cchHHHHHHHHHhCC--CCCCCCCCCCCCCC
Q 016579 143 DVEQLMVIIKQAAKDG-AMLVYTLADPSMAESAKKACELWGIPSTD---VLGPITEAIASHLGV--SPSGLPRGAPGRNF 216 (387)
Q Consensus 143 t~e~l~~ii~~a~~~~-~iV~~Tlvd~elr~~l~~~~~~~gi~~vD---llgp~i~~le~~lG~--~p~~~~~~~pG~~~ 216 (387)
+.++..+.+++.-+.+ +.|+.|= +-+.-..+.+.|+++++|.+= -...++..|..+|.. +|.. ..+|..
T Consensus 67 ~~~~r~~~~~~l~~~~~P~iIvt~-~~~~p~~l~~~a~~~~ipll~t~~~t~~~i~~l~~~L~~~la~~~---~iHg~~- 141 (308)
T PRK05428 67 SEEERKERLKKLFSLEPPCIIVTR-GLEPPPELLEAAKEAGIPLLRTPLSTTRLISKLTNYLDRKLAPRT---SVHGVL- 141 (308)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEEC-cCCCCHHHHHHHHHcCCcEEEeCCcHHHHHHHHHHHHHHHhhhcc---eeeeEE-
Confidence 4555666677764444 5555443 223344577899999999873 223344444444443 2210 123311
Q ss_pred CCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCce
Q 016579 217 PLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYK 272 (387)
Q Consensus 217 ~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyK 272 (387)
. ++..-=|+|.|.|+.||+=|++-|-.+|++
T Consensus 142 ----------------------v---~V~G~GvLi~G~SG~GKSelALeLi~rGh~ 172 (308)
T PRK05428 142 ----------------------V---DIYGIGVLITGESGIGKSETALELIKRGHR 172 (308)
T ss_pred ----------------------E---EECCEEEEEEcCCCCCHHHHHHHHHHcCCc
Confidence 1 122234899999999999999999999976
No 257
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=56.05 E-value=8.4 Score=36.48 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=20.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyK 272 (387)
||++|||+|||+-.-=-|+ ..|+|
T Consensus 15 i~vmGvsGsGKSTigk~L~~~l~~~ 39 (191)
T KOG3354|consen 15 IVVMGVSGSGKSTIGKALSEELGLK 39 (191)
T ss_pred EEEEecCCCChhhHHHHHHHHhCCc
Confidence 8999999999999998888 46754
No 258
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.93 E-value=78 Score=31.81 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=87.2
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
...+.++.|.|--. ....++.-...+... +++++.+.+|--.+.+++.++|+++.++. +|+++ =|-. -+
T Consensus 31 ~P~La~I~vg~d~a--s~~Yv~~k~k~~~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~ 104 (282)
T PRK14180 31 TPKLVAIIVGNDPA--SKTYVASKEKACAQV----GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHIN 104 (282)
T ss_pred CCeEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCC
Confidence 34567777776654 344566555555543 46788999999889999999999886554 55554 4431 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.+....-+++| |-|.|. +..|. +|..+.-.| ..| .||=.=++|- |. +|...+
T Consensus 105 ~~~i~~~I~p~KDV---DGl~~~n~g~l~--~g~~~~~~P-cTp--------------~aii~lL~~y-~i---~l~Gk~ 160 (282)
T PRK14180 105 KNNVIYSIKPEKDV---DGFHPTNVGRLQ--LRDKKCLES-CTP--------------KGIMTMLREY-GI---KTEGAY 160 (282)
T ss_pred HHHHHhhcCccccc---cccChhhHHHHh--cCCCCCcCC-CCH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 22344433334333 555554 22332 331111101 122 2222222221 22 466778
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
+++||-|.+==-|++++|.++|..|
T Consensus 161 vvViGrS~~VGkPla~lL~~~~ATV 185 (282)
T PRK14180 161 AVVVGASNVVGKPVSQLLLNAKATV 185 (282)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEE
Confidence 9999999998889999999998655
No 259
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=55.78 E-value=9.4 Score=35.41 Aligned_cols=25 Identities=36% Similarity=0.667 Sum_probs=21.6
Q ss_pred EEEEccCCCCCChh------hHHhhhcCcee
Q 016579 249 IILSGVSRTGKTPL------SIYLAQKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPl------SmYLA~~GyKV 273 (387)
++|+|.+++|||=+ .++||+.|..|
T Consensus 28 ~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v 58 (199)
T cd03283 28 ILITGSNMSGKSTFLRTIGVNVILAQAGAPV 58 (199)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 68999999999988 57888999755
No 260
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=55.76 E-value=37 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCCEeecchHHHHHHH
Q 016579 169 SMAESAKKACELWGIPSTDVLGPITEAIA 197 (387)
Q Consensus 169 elr~~l~~~~~~~gi~~vDllgp~i~~le 197 (387)
++.+.+++.|++.++++||+...+.....
T Consensus 134 ~~n~~l~~~a~~~~~~~iD~~~~~~~~~~ 162 (191)
T cd01834 134 AYADAVRELAAENGVAFVDLFTPMKEAFQ 162 (191)
T ss_pred HHHHHHHHHHHHcCCeEEecHHHHHHHHH
Confidence 44567788899999999999887765543
No 261
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=55.72 E-value=7.8 Score=33.13 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=21.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCcee
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
-|+++|-+++|||-+-..|.+..+..
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~ 29 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTE 29 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 48999999999999998888654443
No 262
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=55.63 E-value=34 Score=34.59 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=50.0
Q ss_pred ccEEEEEeCChHHHHHHHHHHHHcc-CCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Q 016579 97 GKSIYMVSDGTGWTAEHAVNAALGQ-FEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAK 175 (387)
Q Consensus 97 ~~~IfiVSDsTGeTAe~v~~AaL~Q-F~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~ 175 (387)
.+++++--+..|..=-.++...+.+ .|++ +++.+. -.|.+.+...+.++ +--+|+.++-+.+.|.++.
T Consensus 40 nRQflf~~~dVGk~Kaevaa~~l~~lNp~v------~V~~~~-~~i~~~~~~~~f~~----~~DvVv~a~Dn~~ar~~in 108 (312)
T cd01489 40 NRQFLFRKKHVGKSKAQVAKEAVLSFNPNV------KIVAYH-ANIKDPDFNVEFFK----QFDLVFNALDNLAARRHVN 108 (312)
T ss_pred CcCccCChhHcCcHHHHHHHHHHHHHCCCC------eEEEEe-ccCCCccchHHHHh----cCCEEEECCCCHHHHHHHH
Confidence 4566665555665443444444444 4553 333322 23443221223332 2359999999999999999
Q ss_pred HHHHHcCCCEeec
Q 016579 176 KACELWGIPSTDV 188 (387)
Q Consensus 176 ~~~~~~gi~~vDl 188 (387)
+.|..+++|+|+.
T Consensus 109 ~~c~~~~ip~I~~ 121 (312)
T cd01489 109 KMCLAADVPLIES 121 (312)
T ss_pred HHHHHCCCCEEEE
Confidence 9999999999995
No 263
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=55.60 E-value=27 Score=37.84 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=29.2
Q ss_pred CcEEEEccCCCCCChhhHHhhhc--------CceeeeccccC-C-CCCCccc
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQK--------GYKVANVPIVM-G-VELPKSL 288 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~--------GyKVAN~PLVp-~-v~lP~eL 288 (387)
+-|+|.|-++|||+=+.-++-+. +.+ +|-|+|. + ..+|+++
T Consensus 243 ~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r-~~~pfv~inCaal~e~l 293 (538)
T PRK15424 243 AAVLIQGETGTGKELAAQAIHREYFARHDARQGK-KSHPFVAVNCGAIAESL 293 (538)
T ss_pred CcEEEECCCCCCHHHHHHHHHHhhcccccccCcc-CCCCeEEeecccCChhh
Confidence 46999999999999988877654 434 6778875 2 2345444
No 264
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=55.34 E-value=27 Score=29.22 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
|+++|.+.+|||=+...|.+.-+
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~~ 25 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRF 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999998888875443
No 265
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.31 E-value=32 Score=34.55 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=86.2
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
...+.++.|.|.-. +...++.-...+..+ +++++.+.||--.+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 30 ~P~Laii~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~ 103 (282)
T PRK14169 30 TPTLAVVLVGSDPA--SEVYVRNKQRRAEDI----GVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLD 103 (282)
T ss_pred CCeEEEEEeCCChh--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 44577888887654 344555555555432 36789999998889999999999885543 56665 4431 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.++...-+++| |-|.|. +..|. +|.+. -.| ..| .||=-=|+|- |. +|...+
T Consensus 104 ~~~i~~~I~p~KDV---DGl~~~N~g~l~--~~~~~-~~P-cTp--------------~avi~lL~~~-~i---~l~Gk~ 158 (282)
T PRK14169 104 EQAVIDAIDPDKDV---DGFSPVSVGRLW--ANEPT-VVA-STP--------------YGIMALLDAY-DI---DVAGKR 158 (282)
T ss_pred HHHHHhhcCcccCc---ccCChhhhHHHh--cCCCC-CCC-CCH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 23344443334433 556553 22221 23211 101 122 1111111111 22 455578
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
+++||=|.+==-|++++|.++|..|.
T Consensus 159 vvViGrS~iVGkPla~lL~~~~atVt 184 (282)
T PRK14169 159 VVIVGRSNIVGRPLAGLMVNHDATVT 184 (282)
T ss_pred EEEECCCccchHHHHHHHHHCCCEEE
Confidence 99999999988899999999987664
No 266
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=55.02 E-value=9.3 Score=28.68 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=24.4
Q ss_pred EEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 016579 298 GLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF 339 (387)
Q Consensus 298 GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~ 339 (387)
|.+|+|+....|++..- . -.+.+.|||..|+..
T Consensus 1 gF~ie~~t~~ai~~~~~---~------L~~is~ERi~~El~k 33 (64)
T PF12627_consen 1 GFKIEPETEEAIKENAE---L------LSKISKERIREELEK 33 (64)
T ss_dssp T-EE-HHHHHHHHHHGG---G------GGGS-HHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHH---H------HhcCCHHHHHHHHHH
Confidence 67999999999998753 2 247899999999875
No 267
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.93 E-value=1.3e+02 Score=30.00 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=83.4
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEE-----cC
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYT-----LA 166 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~T-----lv 166 (387)
..++.|+.|.|.-+...-.-.+.-..+--+ ++++.+.||---+.+++.+.|+.+.+++ +++++- +.
T Consensus 33 ~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~G------i~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~ 106 (283)
T PRK14192 33 TPILATILVGDDPASATYVRMKGNACRRVG------MDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQID 106 (283)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccC
Confidence 456889999888776555444443333323 4577777775556888999999886663 566542 22
Q ss_pred CHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCc
Q 016579 167 DPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQK 246 (387)
Q Consensus 167 d~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ 246 (387)
..++.+.+ ..++ -+|-+.|+. .|.=-.+ .+......+..+. +.+++ | |. ++..
T Consensus 107 ~~~~ld~I-~~aK-----DVdg~n~~n------~G~l~~~----~~~~~p~T~~gii---~~L~~---~--~i---~l~G 159 (283)
T PRK14192 107 ERACFDAI-SLAK-----DVDGVTCLG------FGRMAMG----EAAYGSATPAGIM---RLLKA---Y--NI---ELAG 159 (283)
T ss_pred HHHHHhcc-CHHH-----hcCCCCccc------cCccccC----CCcccCCcHHHHH---HHHHH---c--CC---CCCC
Confidence 23344444 2332 345566652 2221111 2222233343333 34433 1 22 3444
Q ss_pred CcEEEEccCC-CCCChhhHHhhhcCcee
Q 016579 247 ADIILSGVSR-TGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 247 ADIVLvGVSR-TsKTPlSmYLA~~GyKV 273 (387)
..++++|-|+ .|| |++++|.++|..|
T Consensus 160 k~vvViG~gg~vGk-pia~~L~~~gatV 186 (283)
T PRK14192 160 KHAVVVGRSAILGK-PMAMMLLNANATV 186 (283)
T ss_pred CEEEEECCcHHHHH-HHHHHHHhCCCEE
Confidence 5799999999 665 9999999998654
No 268
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=54.76 E-value=8.5 Score=38.67 Aligned_cols=19 Identities=42% Similarity=0.468 Sum_probs=17.2
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016579 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
|.|+|++++|||=|+.=||
T Consensus 117 i~lvGpnGsGKTTt~~kLA 135 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLA 135 (318)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7799999999999988777
No 269
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=54.71 E-value=9 Score=34.52 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=24.9
Q ss_pred EEEEccCCCCCChhhHHhhhcC-ceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLAQKG-YKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~G-yKVAN~ 276 (387)
|.|.|-.+||||=.|-+|+++| +.+-+.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~ 30 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 7899999999999999999887 777665
No 270
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=54.65 E-value=65 Score=31.97 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=53.7
Q ss_pred cEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016579 98 KSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (387)
Q Consensus 98 ~~IfiVSDsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (387)
+++|..-+..|.. ++.+++.+..-.|++ +++.+ -.|+ +.+.+.+++. .+--+||.++-+..-+..|.+
T Consensus 72 RQ~~~~~~~vG~~Kve~~~~rl~~INP~~------~V~~i-~~~i-~~e~~~~ll~---~~~D~VIdaiD~~~~k~~L~~ 140 (268)
T PRK15116 72 RQIHALRDNVGLAKAEVMAERIRQINPEC------RVTVV-DDFI-TPDNVAEYMS---AGFSYVIDAIDSVRPKAALIA 140 (268)
T ss_pred cccccChhhcChHHHHHHHHHHHhHCCCc------EEEEE-eccc-ChhhHHHHhc---CCCCEEEEcCCCHHHHHHHHH
Confidence 6666554555643 455555555556653 34333 2344 3555555542 123599999988888999999
Q ss_pred HHHHcCCCEeecch
Q 016579 177 ACELWGIPSTDVLG 190 (387)
Q Consensus 177 ~~~~~gi~~vDllg 190 (387)
.|.++++|+|..+|
T Consensus 141 ~c~~~~ip~I~~gG 154 (268)
T PRK15116 141 YCRRNKIPLVTTGG 154 (268)
T ss_pred HHHHcCCCEEEECC
Confidence 99999999998876
No 271
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=54.48 E-value=55 Score=29.15 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.5
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
.-|+++|.+.+|||=+...|..
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6699999999999999877774
No 272
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=54.45 E-value=7.9 Score=37.20 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.2
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCce
Q 016579 248 DIILSGVSRTGKTPLSIYLAQ-KGYK 272 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~GyK 272 (387)
-++|.|.++||||=++.-+|+ .|.+
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999999999994 4543
No 273
>PRK06835 DNA replication protein DnaC; Validated
Probab=54.41 E-value=12 Score=37.88 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=31.8
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016579 228 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (387)
Q Consensus 228 AIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~----~GyKVAN~PL 278 (387)
|.+|+=.++.+. --++|.|.++||||=|+.=+|+ +|++|.=++.
T Consensus 172 ~~~f~~~f~~~~-------~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 172 CKNFIENFDKNN-------ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred HHHHHHHHhccC-------CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 445666666432 2399999999999999988874 6877765544
No 274
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=54.11 E-value=7.6 Score=37.06 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.4
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016579 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
-++|.|.++||||-++-.+|+
T Consensus 44 ~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 275
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.10 E-value=2.4e+02 Score=28.31 Aligned_cols=151 Identities=14% Similarity=0.114 Sum_probs=85.9
Q ss_pred ccCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-H
Q 016579 94 AMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-P 168 (387)
Q Consensus 94 ~~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~ 168 (387)
....+.++.|.|--+.. ..++.-......+ +++++.+.||--.+++++.+.|+++.++. +|+++ -|-. -
T Consensus 25 ~~P~Laii~vg~d~as~--~Yv~~k~k~~~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i 98 (279)
T PRK14178 25 LYPRLATVIVGDDPASQ--MYVRMKHRACERV----GIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGV 98 (279)
T ss_pred CCCeEEEEEeCCChhHH--HHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCC
Confidence 34567788887766533 3344444444332 35788999999999999999999885554 55554 4431 1
Q ss_pred HHHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcC
Q 016579 169 SMAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKA 247 (387)
Q Consensus 169 elr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~A 247 (387)
+-.+.++.-.-+++ ||=|.|. +..| +.|.+. -.| ..| .||=.=++|= |. +|..+
T Consensus 99 ~~~~v~~~I~p~KD---VDGl~~~n~g~l--~~~~~~-~~P-cTp--------------~av~~ll~~~-~i---~l~Gk 153 (279)
T PRK14178 99 DTERVIAAILPEKD---VDGFHPLNLGRL--VSGLPG-FAP-CTP--------------NGIMTLLHEY-KI---SIAGK 153 (279)
T ss_pred CHHHHHhccCcccC---cccCChhhHHHH--hCCCCC-CCC-CCH--------------HHHHHHHHHc-CC---CCCCC
Confidence 22223333333333 3556553 2222 233221 111 122 1211112211 22 67789
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeee
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYKVAN 275 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN 275 (387)
+++++|-|-.-=-|++++|.++|..|.-
T Consensus 154 ~V~ViGrs~~vGrpla~lL~~~~atVtv 181 (279)
T PRK14178 154 RAVVVGRSIDVGRPMAALLLNADATVTI 181 (279)
T ss_pred EEEEECCCccccHHHHHHHHhCCCeeEE
Confidence 9999999965556999999999866643
No 276
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=53.93 E-value=7.9 Score=38.03 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=17.3
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016579 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
+|++|.|+||||-|---+|
T Consensus 34 vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred EEEEcCCCccHHHHHHHHh
Confidence 8999999999999887777
No 277
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=53.93 E-value=39 Score=34.69 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=50.8
Q ss_pred ccEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016579 97 GKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (387)
Q Consensus 97 ~~~IfiVSDsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p-~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l 174 (387)
.+++++=-+..|.. |+.+++.+..-+|++ ++..++ ++ +.+.+.+++++ --+|+.+.-+.+.|..+
T Consensus 82 ~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v--------~i~~~~~~i-~~~~~~~~~~~----~DlVid~~Dn~~~r~~i 148 (370)
T PRK05600 82 HRQILFGASDVGRPKVEVAAERLKEIQPDI--------RVNALRERL-TAENAVELLNG----VDLVLDGSDSFATKFLV 148 (370)
T ss_pred cccccCChhHCCCHHHHHHHHHHHHHCCCC--------eeEEeeeec-CHHHHHHHHhC----CCEEEECCCCHHHHHHH
Confidence 45655544556654 455555454455653 333333 33 35555555543 24999999999999999
Q ss_pred HHHHHHcCCCEee
Q 016579 175 KKACELWGIPSTD 187 (387)
Q Consensus 175 ~~~~~~~gi~~vD 187 (387)
.+.|.++++|+|-
T Consensus 149 n~~~~~~~iP~v~ 161 (370)
T PRK05600 149 ADAAEITGTPLVW 161 (370)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999875
No 278
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=53.92 E-value=8.5 Score=40.61 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=23.1
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016579 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
.=|.|+|+.++|||=|+-=|| ++|+||+=+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 358899999999999887777 457766533
No 279
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=53.72 E-value=8.3 Score=35.30 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|.|.|.|++|||-++-.|.++
T Consensus 5 IwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 280
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=53.66 E-value=9.6 Score=36.71 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=25.8
Q ss_pred CCCCcCcEE-EEccCCCCCChhhHHhh----hcCceeeeccc
Q 016579 242 QNLQKADII-LSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (387)
Q Consensus 242 ~~L~~ADIV-LvGVSRTsKTPlSmYLA----~~GyKVAN~PL 278 (387)
.|+..--++ +.|.++||||=+|+-+| .+|.||.=+=+
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 355555554 58999999999999776 34666654443
No 281
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=53.61 E-value=8.3 Score=32.03 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=17.7
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|.|.++||||=++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH
Confidence 57899999999999988873
No 282
>PLN02840 tRNA dimethylallyltransferase
Probab=53.54 E-value=9 Score=40.40 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEccCCCCCChhhHHhh-hcCcee
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKV 273 (387)
|+|+|++++|||=+++.|| +.|..+
T Consensus 24 i~I~GptgsGKTtla~~La~~~~~~i 49 (421)
T PLN02840 24 IVISGPTGAGKSRLALELAKRLNGEI 49 (421)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCe
Confidence 8999999999999999999 455443
No 283
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=53.47 E-value=1.4e+02 Score=27.18 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=46.6
Q ss_pred EEEEeCChHHH---HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHH
Q 016579 100 IYMVSDGTGWT---AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESA 174 (387)
Q Consensus 100 IfiVSDsTGeT---Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~elr~~l 174 (387)
|-+|-.+|-.+ +-.+.+++..+|+++. +-..+|.. +.+.. .++++.+-| .|++|-...+..-..+
T Consensus 25 v~~iev~~~l~~~~g~~~i~~l~~~~~~~~----i~~d~k~~----d~~~~--~~~~~~~~Gad~i~vh~~~~~~~~~~~ 94 (206)
T TIGR03128 25 VDIIEIGTPLIKNEGIEAVKEMKEAFPDRK----VLADLKTM----DAGEY--EAEQAFAAGADIVTVLGVADDATIKGA 94 (206)
T ss_pred eeEEEeCCHHHHHhCHHHHHHHHHHCCCCE----EEEEEeec----cchHH--HHHHHHHcCCCEEEEeccCCHHHHHHH
Confidence 55677764444 3455666777787532 12233333 33321 245554555 4777766665444556
Q ss_pred HHHHHHcCCCEe-ecchH
Q 016579 175 KKACELWGIPST-DVLGP 191 (387)
Q Consensus 175 ~~~~~~~gi~~v-Dllgp 191 (387)
.+.|+++|++++ ++++|
T Consensus 95 i~~~~~~g~~~~~~~~~~ 112 (206)
T TIGR03128 95 VKAAKKHGKEVQVDLINV 112 (206)
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 677889999885 44555
No 284
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=53.46 E-value=9.7 Score=34.73 Aligned_cols=32 Identities=34% Similarity=0.315 Sum_probs=28.0
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
|.|+|-+.+|||=+==.|...-.+|+|+|=+-
T Consensus 3 ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~T 34 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGAKQKVGNWPGTT 34 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEESTTSS
T ss_pred EEEECCCCCCHHHHHHHHHCCCceecCCCCCC
Confidence 78999999999988888886669999998764
No 285
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=53.39 E-value=63 Score=34.54 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.2
Q ss_pred CcEEEEccCCCCCChhhHHhh
Q 016579 247 ADIILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA 267 (387)
--|.|+|+.++|||=+..=||
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 468999999999999999888
No 286
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=53.30 E-value=47 Score=34.18 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=49.5
Q ss_pred ccEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Q 016579 97 GKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAK 175 (387)
Q Consensus 97 ~~~IfiVSDsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~ 175 (387)
.+++++=-+..|.. |+.+++.+....|++ +++.+. -.++ .+.+.++++. --+|+.+.-+.+.|..+.
T Consensus 83 ~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v------~i~~~~-~~i~-~~~~~~~~~~----~D~Vvd~~d~~~~r~~ln 150 (392)
T PRK07878 83 QRQVIHGQSDVGRSKAQSARDSIVEINPLV------NVRLHE-FRLD-PSNAVELFSQ----YDLILDGTDNFATRYLVN 150 (392)
T ss_pred ccccccChhcCCChHHHHHHHHHHHhCCCc------EEEEEe-ccCC-hhHHHHHHhc----CCEEEECCCCHHHHHHHH
Confidence 45665533335644 455555555555653 233222 2343 3445555533 249999999999999999
Q ss_pred HHHHHcCCCEee
Q 016579 176 KACELWGIPSTD 187 (387)
Q Consensus 176 ~~~~~~gi~~vD 187 (387)
+.|.++++|+|.
T Consensus 151 ~~~~~~~~p~v~ 162 (392)
T PRK07878 151 DAAVLAGKPYVW 162 (392)
T ss_pred HHHHHcCCCEEE
Confidence 999999999875
No 287
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=53.16 E-value=35 Score=34.68 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchH---HHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 016579 143 DVEQLMVIIKQAAKDG-AMLVYTLADPSMAESAKKACELWGIPSTDVLGP---ITEAIASHLGVSPSGLPRGAPGRNFPL 218 (387)
Q Consensus 143 t~e~l~~ii~~a~~~~-~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp---~i~~le~~lG~~p~~~~~~~pG~~~~l 218 (387)
++++-.+.+++.-+.+ +.|+.|=- -+.-+.+.+.|+++++|.+=..-+ ++..+..+|...-.+.. ..+|
T Consensus 67 ~~e~~~~~~~~~~~~~~P~iIvt~~-~~~p~~l~~~a~~~~ip~l~t~~~~~~~~~~l~~~L~~~la~~~-~~hg----- 139 (304)
T TIGR00679 67 PEEEQKQIIHNLLTLNPPAIILSKS-FTDPTVLLQVNETYQVPILKTDLFSTELSFRLETYLNEQFAPTA-AIHG----- 139 (304)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEECc-CCCCHHHHHHHHHhCCcEEEeCCcHHHHHHHHHHHHHHhhccce-eeee-----
Confidence 4555666777764444 54444421 111256778899999998754322 23334444443321100 0122
Q ss_pred cHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCce
Q 016579 219 SEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYK 272 (387)
Q Consensus 219 d~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyK 272 (387)
.+| .+..-=|+|.|.|+.||+=|.+-|-.+|++
T Consensus 140 --------~~v-------------~i~g~gvli~G~sg~GKS~lal~Li~rg~~ 172 (304)
T TIGR00679 140 --------VLV-------------EVYGVGVLITGKSGVGKSETALELINRGHR 172 (304)
T ss_pred --------EEE-------------EECCEEEEEEcCCCCCHHHHHHHHHHcCCc
Confidence 111 222234899999999999999999999976
No 288
>PRK06893 DNA replication initiation factor; Validated
Probab=53.16 E-value=9.7 Score=35.82 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=24.8
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeecccc
Q 016579 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANVPIV 279 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyKVAN~PLV 279 (387)
++|.|.|+||||=|..=+|| +|.+|.=+++.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 78999999999999988874 57777655553
No 289
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=53.14 E-value=40 Score=27.98 Aligned_cols=48 Identities=17% Similarity=0.378 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCC-----------------HHHHHHHHHHHHHcCCCEeecchHH
Q 016579 145 EQLMVIIKQAAKDGAMLVYTLAD-----------------PSMAESAKKACELWGIPSTDVLGPI 192 (387)
Q Consensus 145 e~l~~ii~~a~~~~~iV~~Tlvd-----------------~elr~~l~~~~~~~gi~~vDllgp~ 192 (387)
+.+.++++.+...+.+++.++.. ..+.+.+++.|+++|++++|+...+
T Consensus 89 ~~l~~~i~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~id~~~~~ 153 (179)
T PF13472_consen 89 QNLRRIIEQLRPHGPVILVSPPPRGPDPRDPKQDYLNRRIDRYNQAIRELAKKYGVPFIDLFDAF 153 (179)
T ss_dssp HHHHHHHHHHHTTSEEEEEE-SCSSSSTTTTHTTCHHHHHHHHHHHHHHHHHHCTEEEEEHHHHH
T ss_pred HHHHHHHHhhcccCcEEEecCCCcccccccccchhhhhhHHHHHHHHHHHHHHcCCEEEECHHHH
Confidence 34566677776666777776621 5677888999999999999987763
No 290
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=53.06 E-value=8.7 Score=40.51 Aligned_cols=39 Identities=38% Similarity=0.583 Sum_probs=27.7
Q ss_pred hhhhhhhhCCC-----CCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016579 227 EAIEFTIKQDD-----GALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 227 eAIeFavkhDD-----G~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
+++++-+.|-+ |..+. + -++|.|.++||||-+.-++|+.
T Consensus 197 e~v~lpl~~p~~~~~~gi~~p---~-gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 197 EAVELPLTHPELYDDIGIKPP---K-GVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHHHhhhhCHHHHHhcCCCCC---c-EEEEECCCCCCHHHHHHHHHHh
Confidence 45666666643 33322 1 2899999999999999999953
No 291
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.02 E-value=36 Score=30.09 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCC-CEEEEEcCCH----------HHHHHHHHHHHHcCCCEeecchHH
Q 016579 145 EQLMVIIKQAAKDG-AMLVYTLADP----------SMAESAKKACELWGIPSTDVLGPI 192 (387)
Q Consensus 145 e~l~~ii~~a~~~~-~iV~~Tlvd~----------elr~~l~~~~~~~gi~~vDllgp~ 192 (387)
+.+..+++++...+ .+|+.+.... ++.+.+++.|++.+++++|+...+
T Consensus 95 ~~l~~lv~~~~~~~~~vili~~pp~~~~~~~~~~~~~~~~~~~~a~~~~~~~id~~~~~ 153 (200)
T cd01829 95 QRIDELLNVARAKGVPVIWVGLPAMRSPKLSADMVYLNSLYREEVAKAGGEFVDVWDGF 153 (200)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCCChhHhHHHHHHHHHHHHHHHHcCCEEEEhhHhh
Confidence 44555666665444 3555554221 578889999999999999997665
No 292
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=52.87 E-value=9.2 Score=40.21 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=23.1
Q ss_pred CcEEEEccCCCCCChhhHHhh-----hcCceeeec
Q 016579 247 ADIILSGVSRTGKTPLSIYLA-----QKGYKVANV 276 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA-----~~GyKVAN~ 276 (387)
.=|+++|+.++|||=++.-|| ++|+||+=+
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV 134 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV 134 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 458999999999999977776 246766543
No 293
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=52.72 E-value=7 Score=41.56 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=25.3
Q ss_pred cCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 246 KADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
.--|+|+|+++||||.++--||.. .|.|++.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~----l~~~fi~ 80 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKL----ANAPFIK 80 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH----hCChhee
Confidence 356999999999999999999964 2566654
No 294
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=52.63 E-value=10 Score=34.60 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+++|.+|||||=++.-||..
T Consensus 4 ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 789999999999999999954
No 295
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=52.56 E-value=15 Score=30.55 Aligned_cols=76 Identities=29% Similarity=0.382 Sum_probs=46.9
Q ss_pred EccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHH
Q 016579 252 SGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMD 331 (387)
Q Consensus 252 vGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e 331 (387)
|||. .|=|++.-||.++||+|.++= .+ ..+-.+|-==|-|++.| .||..+
T Consensus 4 IAVE-~~Ls~v~~~L~~~GyeVv~l~--~~----~~~~~~daiVvtG~~~n-------------~mg~~d---------- 53 (80)
T PF03698_consen 4 IAVE-EGLSNVKEALREKGYEVVDLE--NE----QDLQNVDAIVVTGQDTN-------------MMGIQD---------- 53 (80)
T ss_pred EEec-CCchHHHHHHHHCCCEEEecC--Cc----cccCCcCEEEEECCCcc-------------cccccc----------
Confidence 3444 456788999999999997653 11 11222222223344322 244421
Q ss_pred HHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016579 332 YVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 332 ~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
.. .+.||||-++++.||+..+|-+.+
T Consensus 54 -------------~~-~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 54 -------------TS-TKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred -------------cc-cCceEEecCCCCHHHHHHHHHHhh
Confidence 01 257999999999999999887654
No 296
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=52.55 E-value=10 Score=32.32 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=23.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPI 278 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PL 278 (387)
|+|+|-+.+|||-+--.|.+.-..+.++|.
T Consensus 3 i~~~G~~~~GKssli~~l~~~~~~~~~~~~ 32 (168)
T cd01897 3 LVIAGYPNVGKSSLVNKLTRAKPEVAPYPF 32 (168)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCccCCCCC
Confidence 799999999999999999865455555554
No 297
>PF13479 AAA_24: AAA domain
Probab=52.41 E-value=7.7 Score=36.08 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=16.2
Q ss_pred EEEEccCCCCCChhhHHh
Q 016579 249 IILSGVSRTGKTPLSIYL 266 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYL 266 (387)
++|-|+|++|||.++.++
T Consensus 6 ~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEECCCCCCHHHHHHhC
Confidence 789999999999998766
No 298
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=52.21 E-value=9.8 Score=32.83 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=17.0
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016579 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
++|+|.|++|||=|..-|.
T Consensus 18 v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 18 VLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCCCCHHHHHHHhh
Confidence 7899999999999887765
No 299
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=52.10 E-value=68 Score=32.86 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=21.1
Q ss_pred CCCCcCcEEE-EccCCCCCChhhHHhh
Q 016579 242 QNLQKADIIL-SGVSRTGKTPLSIYLA 267 (387)
Q Consensus 242 ~~L~~ADIVL-vGVSRTsKTPlSmYLA 267 (387)
.||..-|+|+ -|.+++|||=+++.+|
T Consensus 189 ~G~~~g~liviag~pg~GKT~~al~ia 215 (421)
T TIGR03600 189 NGLVKGDLIVIGARPSMGKTTLALNIA 215 (421)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 3666777654 6789999999999999
No 300
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=51.94 E-value=1.2e+02 Score=28.68 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=23.8
Q ss_pred CCCCcCcE-EEEccCCCCCChhhHHhhhc-----Cceeeec
Q 016579 242 QNLQKADI-ILSGVSRTGKTPLSIYLAQK-----GYKVANV 276 (387)
Q Consensus 242 ~~L~~ADI-VLvGVSRTsKTPlSmYLA~~-----GyKVAN~ 276 (387)
.|+..-.+ +|.|.+++|||=+++.+|.. |++|.=+
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~i 65 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTI 65 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEE
Confidence 35555554 56789999999999887733 5555433
No 301
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=51.92 E-value=31 Score=36.04 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=68.5
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhcCceeeecccc---CCCC--------------CCccccccCCCcEEEEecChhHHH
Q 016579 245 QKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV---MGVE--------------LPKSLFQVDPEKVFGLTINPLVLQ 307 (387)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV---p~v~--------------lP~eLf~v~~~KI~GLTIdPerL~ 307 (387)
.-|||=|||-.-.||.-|-=-+.+--=|+||||++ |.+- +|--+--...+ +|| --+-|.
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G--~GL--G~~FLr 233 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG--VGL--GLRFLR 233 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccC--CCc--cHHHHH
Confidence 35999999999999988777777888999999986 4222 22221111111 122 223455
Q ss_pred HHHHHHHhhcCCCCC---CCCCCCCHHHHHHHHH-HHHHHhhhCCCCcEEeCCC-ccHHHHHHHHHHHHh
Q 016579 308 SIRKARARSLGFRDE---IRSNYSEMDYVREELE-FAGRIFAQNPVWPVIEVTG-KAIEETAAVVLRLYH 372 (387)
Q Consensus 308 ~IR~eRlk~lGl~~~---~~S~YA~~e~I~~EL~-~A~~lf~k~~g~pvIDVT~-kSIEEtAa~Il~~~~ 372 (387)
-|=+.|+-..=++-. ....+.+.+.|..||+ |...|+.| +.|-|.|=-+ ---||.+....+.+.
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K-~~ivv~NKiD~~~~~e~~~~~~~~l~ 302 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEK-PRIVVLNKIDLPLDEEELEELKKALA 302 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccC-ceEEEEeccCCCcCHHHHHHHHHHHH
Confidence 554555421111110 1223667777777775 44666666 4676666655 233344444444443
No 302
>PTZ00202 tuzin; Provisional
Probab=51.81 E-value=40 Score=36.80 Aligned_cols=99 Identities=14% Similarity=0.209 Sum_probs=57.6
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhH
Q 016579 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLV 305 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPer 305 (387)
++++.=++...|...++ =++|+|.++||||=|+-.++...-++ .+ ..||.-
T Consensus 271 la~Lr~VL~~~d~~~pr-----ivvLtG~~G~GKTTLlR~~~~~l~~~-------------qL-----------~vNprg 321 (550)
T PTZ00202 271 ESWVRQVLRRLDTAHPR-----IVVFTGFRGCGKSSLCRSAVRKEGMP-------------AV-----------FVDVRG 321 (550)
T ss_pred HHHHHHHHhccCCCCce-----EEEEECCCCCCHHHHHHHHHhcCCce-------------EE-----------EECCCC
Confidence 34455555544444342 46899999999999998888542211 22 111111
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCC
Q 016579 306 LQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTG 357 (387)
Q Consensus 306 L~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~ 357 (387)
-.+..+.=++.||++. ......-.++|++.|..+.+ .+. ..|||=++-
T Consensus 322 ~eElLr~LL~ALGV~p-~~~k~dLLrqIqeaLl~~~~--e~G-rtPVLII~l 369 (550)
T PTZ00202 322 TEDTLRSVVKALGVPN-VEACGDLLDFISEACRRAKK--MNG-ETPLLVLKL 369 (550)
T ss_pred HHHHHHHHHHHcCCCC-cccHHHHHHHHHHHHHHHHH--hCC-CCEEEEEEe
Confidence 1455556688899843 12223455788888887766 222 467765553
No 303
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=51.79 E-value=7.3 Score=39.39 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=12.7
Q ss_pred EEEEccCCCCCChh
Q 016579 249 IILSGVSRTGKTPL 262 (387)
Q Consensus 249 IVLvGVSRTsKTPl 262 (387)
+||||.|+||||-|
T Consensus 30 ~vliGpSGsGKTTt 43 (309)
T COG1125 30 LVLIGPSGSGKTTT 43 (309)
T ss_pred EEEECCCCCcHHHH
Confidence 79999999999965
No 304
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.54 E-value=51 Score=29.66 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCCEeecchHH
Q 016579 168 PSMAESAKKACELWGIPSTDVLGPI 192 (387)
Q Consensus 168 ~elr~~l~~~~~~~gi~~vDllgp~ 192 (387)
.++.+.+++.|++++++++|+.+.+
T Consensus 155 ~~~~~~~~~~a~~~~~~~iD~~~~~ 179 (208)
T cd01839 155 KGLADAYRALAEELGCHFFDAGSVG 179 (208)
T ss_pred HHHHHHHHHHHHHhCCCEEcHHHHh
Confidence 4677889999999999999986643
No 305
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=51.53 E-value=23 Score=33.73 Aligned_cols=112 Identities=14% Similarity=0.106 Sum_probs=57.6
Q ss_pred ccCCHHHHHHHHHHHHhCC-C----EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCC
Q 016579 140 GIDDVEQLMVIIKQAAKDG-A----MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGR 214 (387)
Q Consensus 140 ~V~t~e~l~~ii~~a~~~~-~----iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~ 214 (387)
++ +.++++++.......+ . ++=-.++++ .+.++..++.+|+|++|+ .. +..++.......|.
T Consensus 14 ~i-~~e~l~~a~~~~~~~~~~l~~~L~~~~~ls~--~~l~~~la~~~~~p~vdl-~~--------~~~~~~~~~~~~~~- 80 (274)
T TIGR03029 14 KL-SEDEAERILRLQKQENIRFGEAALRLGLINE--DDIRQALSRQFEYPYLPP-ND--------GSFSPDLIAAYQPF- 80 (274)
T ss_pred CC-CHHHHHHHHHHHHhhCccHHHHHHHcCCCCH--HHHHHHHHHHhCCCCccc-cc--------cccccccccccCCC-
Confidence 44 5788887766554333 1 122223333 245555677788999984 21 11122110011121
Q ss_pred CCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEE--ccCCCCCChhhHHhh----hcCceee
Q 016579 215 NFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILS--GVSRTGKTPLSIYLA----QKGYKVA 274 (387)
Q Consensus 215 ~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLv--GVSRTsKTPlSmYLA----~~GyKVA 274 (387)
-.+.+.|..=-..+.|......+ =+|.| +-.+.|||=+++.|| +.|.||.
T Consensus 81 -~~~~e~~~~l~~~l~~~~~~~~~---------~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vl 136 (274)
T TIGR03029 81 -SPQVEALRALRSQLMLRWFSEGR---------KALAVVSAKSGEGCSYIAANLAIVFSQLGEKTL 136 (274)
T ss_pred -CHHHHHHHHHHHHhhhhccCCCC---------eEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 12335544433445554332221 13333 457899999998877 5799995
No 306
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=51.51 E-value=59 Score=32.92 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=67.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee-eeccccC-----C--------------------CCCCcccc----ccC-----C
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKV-ANVPIVM-----G--------------------VELPKSLF----QVD-----P 293 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKV-AN~PLVp-----~--------------------v~lP~eLf----~v~-----~ 293 (387)
||+-|-|++|||-----|--.||-+ -|+|..- + ...+..|+ ++. .
T Consensus 4 vIVTGlSGAGKsvAl~~lEDlGyycvDNLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~~ 83 (286)
T COG1660 4 VIVTGLSGAGKSVALRVLEDLGYYCVDNLPPQLLPKLADLMLTLESRITKVAVVIDVRSREFFGDLEEVLDELKDNGDID 83 (286)
T ss_pred EEEecCCCCcHHHHHHHHHhcCeeeecCCCHHHHHHHHHHHhhcccCCceEEEEEecccchhHHHHHHHHHHHHhcCCCC
Confidence 6778999999998777777889765 5888542 0 01111111 000 0
Q ss_pred CcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016579 294 EKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
-+|.=|+.+-+.|.+-=++=+++==|+. .+ .=++-|..|=+.-.-|-... =-|||+|..+.-|....|.+.+..
T Consensus 84 ~~iLFLeA~~~~Lv~RY~etRR~HPL~~-~~---~l~~~I~~ERelL~pLk~~A--~~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 84 PRVLFLEADDETLVRRYSETRRSHPLSE-DG---LLLEAIAKERELLAPLREIA--DLVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred ceEEEEECchhHHHHHHhhhhhcCCCCc-cC---cHHHHHHHHHHHHHHHHHHh--hhEeecccCCHHHHHHHHHHHHcc
Confidence 2344444444444432111111111111 01 14556777766655554432 369999999999999999999874
No 307
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=51.49 E-value=10 Score=31.02 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=26.8
Q ss_pred cEEEEccCCCCCChhhHHhhhc-CceeeeccccC
Q 016579 248 DIILSGVSRTGKTPLSIYLAQK-GYKVANVPIVM 280 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~-GyKVAN~PLVp 280 (387)
+|+|+|.+++|||=+-=.|.+. -.++++.|-.-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T 34 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTT 34 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccce
Confidence 4899999999999999999953 45777776554
No 308
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=51.46 E-value=9.8 Score=33.60 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.9
Q ss_pred cEEEEccCCCCCChhhHHhhhcCcee
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
-|+++|-+.+|||-|...|.+..+.+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~ 27 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV 27 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC
Confidence 48999999999999999888655544
No 309
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=51.42 E-value=8.6 Score=39.65 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=19.4
Q ss_pred CCcCcEE-EEccCCCCCChhhHHhh
Q 016579 244 LQKADII-LSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 244 L~~ADIV-LvGVSRTsKTPlSmYLA 267 (387)
+.+-+++ |+|+|+||||=|-.=+|
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHh
Confidence 3444555 99999999999988888
No 310
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.34 E-value=1.6e+02 Score=29.66 Aligned_cols=147 Identities=17% Similarity=0.139 Sum_probs=85.4
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HHH
Q 016579 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PSM 170 (387)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~el 170 (387)
..+.+++|.|.-.. ...++.-...+..+ +++++.+.||---+.+++.+.|+++.++. +|+++ =|-. -+-
T Consensus 33 P~Laii~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~ 106 (278)
T PRK14172 33 PKIASILVGNDGGS--IYYMNNQEKVANSL----GIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDE 106 (278)
T ss_pred ceEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCH
Confidence 35778888876543 34444444444332 36788999998889999999998885553 66665 4421 112
Q ss_pred HHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcE
Q 016579 171 AESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADI 249 (387)
Q Consensus 171 r~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADI 249 (387)
.+.+..-.-+++| |-|.|. +..|. .|.+. -.| ..| .||=.=++|- |. +|...++
T Consensus 107 ~~i~~~I~p~KDV---DGl~~~n~g~l~--~g~~~-~~P-cTp--------------~av~~lL~~~-~i---~l~Gk~v 161 (278)
T PRK14172 107 KKITNKIDANKDI---DCLTFISVGKFY--KGEKC-FLP-CTP--------------NSVITLIKSL-NI---DIEGKEV 161 (278)
T ss_pred HHHHhccCccccc---CccCHhhHHHHh--CCCCC-CcC-CCH--------------HHHHHHHHHh-CC---CCCCCEE
Confidence 2234333334333 656665 11221 23221 111 122 1221122221 11 6677899
Q ss_pred EEEccCCCCCChhhHHhhhcCcee
Q 016579 250 ILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 250 VLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
++||=|.+==-||+++|.++|..|
T Consensus 162 vViGrS~~VGkPla~lL~~~~AtV 185 (278)
T PRK14172 162 VVIGRSNIVGKPVAQLLLNENATV 185 (278)
T ss_pred EEECCCccchHHHHHHHHHCCCEE
Confidence 999999999999999999988555
No 311
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=51.06 E-value=94 Score=28.76 Aligned_cols=67 Identities=21% Similarity=0.177 Sum_probs=38.1
Q ss_pred EEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH--------hhhCCCCcEEeCCCccHHHHHHHH
Q 016579 296 VFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRI--------FAQNPVWPVIEVTGKAIEETAAVV 367 (387)
Q Consensus 296 I~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~l--------f~k~~g~pvIDVT~kSIEEtAa~I 367 (387)
-|=||.+|+.=.+-|-.=++..| .=.+.+.|.++|..=.+. +++..+.-+||+|+.+|||+-+.|
T Consensus 83 KifLtAs~e~RA~RR~~e~~~~g-------~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a~DAi~IDts~lti~evv~~i 155 (157)
T PF02224_consen 83 KIFLTASPEVRARRRYKELQEKG-------KKVSYEEVLEDIKERDERDSNREVAPLKKAEDAIVIDTSNLTIEEVVEKI 155 (157)
T ss_dssp EEEEE--HHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHCTSSS-SS--TTSEEEETTTS-HHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHhhChhhccCccCCCccCCCeEEEECCCCCHHHHHHHH
Confidence 36699999764443333333333 235778888887542221 112236779999999999999999
Q ss_pred HH
Q 016579 368 LR 369 (387)
Q Consensus 368 l~ 369 (387)
++
T Consensus 156 l~ 157 (157)
T PF02224_consen 156 LE 157 (157)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 312
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=50.98 E-value=37 Score=28.58 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
..|+++|.+++|||=+...|.+.-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 569999999999999998887543
No 313
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.97 E-value=1.5e+02 Score=29.79 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=87.5
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcC-CHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLA-DPS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlv-d~e 169 (387)
...+.++.|.|.-+. ...++.-......+ +++++.+.||--.+++++.+.|+++.++. +|+++ =|- .-+
T Consensus 30 ~P~Laii~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~ 103 (282)
T PRK14166 30 ESCLAVILVGDNPAS--QTYVKSKAKACEEC----GIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHIC 103 (282)
T ss_pred CceEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 445778888776643 44455544444432 35788888988778889999999885543 56665 443 223
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.++.-.-+++| |-|.|. +..| ++|..+.-.| ..| .|+=.=++|- |. +|.-.+
T Consensus 104 ~~~i~~~I~p~KDV---DGl~~~N~g~l--~~g~~~~~~P-cTp--------------~avi~lL~~y-~i---~l~Gk~ 159 (282)
T PRK14166 104 KDLILESIISSKDV---DGFHPINVGYL--NLGLESGFLP-CTP--------------LGVMKLLKAY-EI---DLEGKD 159 (282)
T ss_pred HHHHHhccCcccCc---ccCChhhhHHH--hcCCCCCCcC-CCH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 33344444444433 556553 2222 2342211111 122 2222222221 22 566789
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
+++||=|.+-=-|++++|.++|.-|.
T Consensus 160 vvVvGrS~iVGkPla~lL~~~~atVt 185 (282)
T PRK14166 160 AVIIGASNIVGRPMATMLLNAGATVS 185 (282)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEEE
Confidence 99999999988999999999886664
No 314
>PRK05480 uridine/cytidine kinase; Provisional
Probab=50.76 E-value=8.7 Score=35.06 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|.|.|.|+||||=|+--|++
T Consensus 9 I~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999984
No 315
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=50.76 E-value=28 Score=37.04 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=59.4
Q ss_pred EeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcC
Q 016579 103 VSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWG 182 (387)
Q Consensus 103 VSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~g 182 (387)
|....|.|-....+++|-|=|+ +..+--|++.+.+..+++. ...|.+|+.||--.+....+.+.. .+|
T Consensus 292 v~~~~g~~f~~~lr~~LR~dPD----------vI~vGEiRd~eta~~a~~a-a~tGHlvlsTlHa~sa~~ai~RL~-~lg 359 (486)
T TIGR02533 292 VNPKIGLTFAAGLRAILRQDPD----------IIMVGEIRDLETAQIAIQA-SLTGHLVLSTLHTNDAAGAVTRLI-DMG 359 (486)
T ss_pred EccccCccHHHHHHHHHhcCCC----------EEEEeCCCCHHHHHHHHHH-HHhCCcEEEEECCCCHHHHHHHHH-HhC
Confidence 4566789999999999999886 4567889999998877765 457889999999999999998887 467
Q ss_pred CCEee
Q 016579 183 IPSTD 187 (387)
Q Consensus 183 i~~vD 187 (387)
++-..
T Consensus 360 ~~~~~ 364 (486)
T TIGR02533 360 VEPFL 364 (486)
T ss_pred CCHHH
Confidence 76433
No 316
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=50.73 E-value=7.4 Score=36.22 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=18.8
Q ss_pred EccCCCCCChhhHHhh-hcCce
Q 016579 252 SGVSRTGKTPLSIYLA-QKGYK 272 (387)
Q Consensus 252 vGVSRTsKTPlSmYLA-~~GyK 272 (387)
+|||+||||-..-=|| +.|+|
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~ 22 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAK 22 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCc
Confidence 5999999999999999 67865
No 317
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=50.68 E-value=27 Score=33.41 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=63.3
Q ss_pred cccCCHHHHHHHHHHHHhCC--CEEEEEcC-C--HHHHHHHHHHHHHcCCCEeecchH--HHHHHHHHhCCCCCCC-CCC
Q 016579 139 SGIDDVEQLMVIIKQAAKDG--AMLVYTLA-D--PSMAESAKKACELWGIPSTDVLGP--ITEAIASHLGVSPSGL-PRG 210 (387)
Q Consensus 139 p~V~t~e~l~~ii~~a~~~~--~iV~~Tlv-d--~elr~~l~~~~~~~gi~~vDllgp--~i~~le~~lG~~p~~~-~~~ 210 (387)
||+.+.++ .++++.+.| +++|+-+. + .++. .+.+.|+++|+..+=++.| -.+.++..+...+.-. -..
T Consensus 85 ~~~~~~~~---~i~~~~~~Gadgvii~dlp~e~~~~~~-~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv 160 (244)
T PRK13125 85 DYVDSLDN---FLNMARDVGADGVLFPDLLIDYPDDLE-KYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGL 160 (244)
T ss_pred hhhhCHHH---HHHHHHHcCCCEEEECCCCCCcHHHHH-HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEe
Confidence 45555554 445554444 58887553 2 4444 5667899999999999999 2345555554443100 001
Q ss_pred CCCCCCCCcH---HHHhhhhhh--hhhhhCCCCC-CCCCCCc-----CcEEEEc
Q 016579 211 APGRNFPLSE---EYFRRIEAI--EFTIKQDDGA-LPQNLQK-----ADIILSG 253 (387)
Q Consensus 211 ~pG~~~~ld~---~YF~RIeAI--eFavkhDDG~-~~~~L~~-----ADIVLvG 253 (387)
.||--..+.. ++.+++..+ +--|.-|=|. +++++.+ ||.+++|
T Consensus 161 ~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 161 RPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 2221123443 455555543 2335567777 7666655 7999999
No 318
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=50.49 E-value=11 Score=34.81 Aligned_cols=27 Identities=37% Similarity=0.568 Sum_probs=24.2
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cceeee
Q 016579 249 IILSGVSRTGKTPLSIYLAQK-GYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~-GyKVAN 275 (387)
|.|.|..+||||=.+=+|+++ |+.+-+
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 789999999999999999987 887654
No 319
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=50.42 E-value=12 Score=34.08 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~ 276 (387)
+.++|-+|||||=++..+|. .|-++.-+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~ 30 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYI 30 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 57899999999999999984 35444444
No 320
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=50.25 E-value=9.5 Score=36.78 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.7
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016579 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
-++|.|.++||||-+...+|+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999853
No 321
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=50.24 E-value=9.6 Score=34.15 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=24.7
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeecc
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~P 277 (387)
.-|+|+|-+++|||-+--.|.+....+.|.|
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~ 72 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQL 72 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCcc
Confidence 5799999999999999988886554454544
No 322
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.06 E-value=2.9e+02 Score=27.92 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=85.6
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
...+.++.|.|.-+.. ..++.-...+..+ +++++.+.||--.+.+++.+.|+++.++. +|+++ -|-. -+
T Consensus 31 ~P~LaiI~vg~d~as~--~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~ 104 (285)
T PRK14191 31 RPKLAVILVGKDPASQ--TYVNMKIKACERV----GMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHID 104 (285)
T ss_pred CCeEEEEEeCCCHHHH--HHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 4467888888766543 3333333333222 35789999999999999999999986553 55554 4431 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.+....-+++| |-|.|. +..| +.|.+. -.| ..| .||=-=|+|- |. +|....
T Consensus 105 ~~~i~~~I~p~KDV---DGl~~~n~g~l--~~g~~~-~~P-cTp--------------~avi~lL~~~-~i---~l~Gk~ 159 (285)
T PRK14191 105 TKMVLEAIDPNKDV---DGFHPLNIGKL--CSQLDG-FVP-ATP--------------MGVMRLLKHY-HI---EIKGKD 159 (285)
T ss_pred HHHHHhcCCccccc---cccChhhHHHH--hcCCCC-CCC-CcH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 22233333334433 656654 2222 233221 101 122 2222222221 12 566678
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
+++||=|.+==+|++++|.++|..|
T Consensus 160 vvVvGrs~~VG~Pla~lL~~~gAtV 184 (285)
T PRK14191 160 VVIIGASNIVGKPLAMLMLNAGASV 184 (285)
T ss_pred EEEECCCchhHHHHHHHHHHCCCEE
Confidence 9999999888899999999998655
No 323
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=50.03 E-value=86 Score=26.35 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=39.3
Q ss_pred HHHHHHhCCC--EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016579 150 IIKQAAKDGA--MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 150 ii~~a~~~~~--iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+++.+....+ +|+.+=+.++.++.+...|++++||++...+ --..|...+|.+.
T Consensus 24 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~-tk~eLG~a~Gk~~ 79 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEG-SSVELGTLCGKPF 79 (99)
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC-CHHHHHHHhCCCC
Confidence 3444443333 5566667799999999999999999987533 3478888888764
No 324
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=49.91 E-value=55 Score=33.20 Aligned_cols=80 Identities=10% Similarity=-0.021 Sum_probs=50.0
Q ss_pred ccEEEEEeCChH---HHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Q 016579 97 GKSIYMVSDGTG---WTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAES 173 (387)
Q Consensus 97 ~~~IfiVSDsTG---eTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~ 173 (387)
.+++++--+-.| --|+.+++.+..-+|++ +++.+..--+.+.+.+++++ --+||-+.-+.+.|..
T Consensus 65 ~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v--------~i~~~~~~~~~~~~~~~~~~----~DlVid~~D~~~~r~~ 132 (338)
T PRK12475 65 QRQQLYTEEDAKQKKPKAIAAKEHLRKINSEV--------EIVPVVTDVTVEELEELVKE----VDLIIDATDNFDTRLL 132 (338)
T ss_pred CccccccHHHccCCccHHHHHHHHHHHHCCCc--------EEEEEeccCCHHHHHHHhcC----CCEEEEcCCCHHHHHH
Confidence 345444433333 24566666655555653 33444332345555555432 2488888889999999
Q ss_pred HHHHHHHcCCCEeec
Q 016579 174 AKKACELWGIPSTDV 188 (387)
Q Consensus 174 l~~~~~~~gi~~vDl 188 (387)
+.+.|.++|+|.|..
T Consensus 133 in~~~~~~~ip~i~~ 147 (338)
T PRK12475 133 INDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999998863
No 325
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.76 E-value=61 Score=32.63 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=88.0
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcC-CHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLA-DPS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlv-d~e 169 (387)
...+.++.|.|.-+. ...++.-......+ ++.++.+.||--.+.+++.+.|+++.++. +|+++ -|- .-+
T Consensus 31 ~P~Laii~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~ 104 (284)
T PRK14170 31 KPGLAVVLVGDNQAS--RTYVRNKQKRTEEA----GMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHIS 104 (284)
T ss_pred CCeEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCC
Confidence 456788888887654 34444444444332 35788999998889999999999885554 56665 432 112
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.++...-+++| |-|.|. +..|. +|.+. -.| ..| .||=-=++|= |. +|...+
T Consensus 105 ~~~i~~~I~p~KDV---DGl~p~N~g~l~--~~~~~-~~P-cTp--------------~avi~lL~~~-~i---~l~Gk~ 159 (284)
T PRK14170 105 EEKVIDTISYDKDV---DGFHPVNVGNLF--IGKDS-FVP-CTP--------------AGIIELIKST-GT---QIEGKR 159 (284)
T ss_pred HHHHHhccCcccCc---ccCChhhhhHHh--CCCCC-CCC-CCH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 22344444434433 666664 33332 23221 111 122 1111111110 22 566679
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
+++||=|.+-=-||+++|.++|..|.
T Consensus 160 vvVvGrS~iVGkPla~lL~~~~atVt 185 (284)
T PRK14170 160 AVVIGRSNIVGKPVAQLLLNENATVT 185 (284)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEEE
Confidence 99999999999999999999986654
No 326
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.75 E-value=1.6e+02 Score=29.66 Aligned_cols=149 Identities=18% Similarity=0.177 Sum_probs=85.8
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
...+.+..|.|.-.. ...++.-...+..+ +++++.+.||--.+.+++...|+++.++. +|+++ =|-. -+
T Consensus 32 ~p~Laii~vg~~~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~ 105 (286)
T PRK14175 32 TPKLSVILVGNDGAS--QSYVRSKKKAAEKI----GMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVS 105 (286)
T ss_pred CCeEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 445778888876653 33444333333322 35788999998788999999998886553 66665 4332 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-++.+..-.-+++| |-|.|. +..| +.|.+. -.| ..| .||=.-++|=+. +|....
T Consensus 106 ~~~i~~~I~p~KDV---DGl~~~n~g~l--~~~~~~-~~P-cTp--------------~ai~~ll~~~~i----~l~Gk~ 160 (286)
T PRK14175 106 EQKILEAINPEKDV---DGFHPINIGKL--YIDEQT-FVP-CTP--------------LGIMEILKHADI----DLEGKN 160 (286)
T ss_pred HHHHHhccCcccCc---ccCCccchHhH--hcCCCC-CCC-CcH--------------HHHHHHHHHcCC----CCCCCE
Confidence 22234333334333 556553 2222 123211 111 133 233333333221 588899
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
+++||-|++-=.|++++|.++|..|-
T Consensus 161 vvVIGrs~~VG~pla~lL~~~gatVt 186 (286)
T PRK14175 161 AVVIGRSHIVGQPVSKLLLQKNASVT 186 (286)
T ss_pred EEEECCCchhHHHHHHHHHHCCCeEE
Confidence 99999999555699999999997664
No 327
>PLN02674 adenylate kinase
Probab=49.75 E-value=11 Score=36.84 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.0
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCcee
Q 016579 248 DIILSGVSRTGKTPLSIYLA-QKGYKV 273 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKV 273 (387)
-|+|+|..++|||=+|-.|| .+|+..
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~~~~h 59 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEYCLCH 59 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 49999999999999999999 567655
No 328
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=49.71 E-value=47 Score=28.78 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCCEeecchHHHH
Q 016579 168 PSMAESAKKACELWGIPSTDVLGPITE 194 (387)
Q Consensus 168 ~elr~~l~~~~~~~gi~~vDllgp~i~ 194 (387)
.++.+.+++.|+++++++||+...+..
T Consensus 116 ~~~n~~l~~~a~~~~~~~id~~~~~~~ 142 (174)
T cd01841 116 QRLNDAIKELAPELGVTFIDLNDVLVD 142 (174)
T ss_pred HHHHHHHHHHHHHCCCEEEEcHHHHcC
Confidence 356688899999999999999887643
No 329
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=49.69 E-value=11 Score=34.32 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=19.8
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh
Q 016579 243 NLQKAD-IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA 267 (387)
|+..-+ +.|.|.|+||||-+++.+|
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia 40 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLA 40 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHH
Confidence 344444 4678999999999999998
No 330
>PRK08116 hypothetical protein; Validated
Probab=49.51 E-value=12 Score=36.51 Aligned_cols=28 Identities=43% Similarity=0.504 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyKVAN~ 276 (387)
++|.|.++||||-|+.-+|| +|+.|.=+
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 89999999999999998886 46665433
No 331
>PRK05642 DNA replication initiation factor; Validated
Probab=49.48 E-value=12 Score=35.50 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=22.9
Q ss_pred CcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016579 247 ADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
-=++|.|.++||||=|...++ ++|.+|.=+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~ 79 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYL 79 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEe
Confidence 337899999999999987766 357776533
No 332
>PRK14529 adenylate kinase; Provisional
Probab=49.34 E-value=11 Score=36.34 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhh-hcCcee
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKV 273 (387)
|+|+|..++|||-.|-.|| ++|+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~ 28 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAH 28 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 8999999999999999999 566654
No 333
>PRK03094 hypothetical protein; Provisional
Probab=49.17 E-value=18 Score=30.10 Aligned_cols=76 Identities=26% Similarity=0.272 Sum_probs=50.3
Q ss_pred EccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHH
Q 016579 252 SGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMD 331 (387)
Q Consensus 252 vGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e 331 (387)
|||. .|=|++-=||.++||.|.++.- +..+..+|-=-+-|++.| .||..+
T Consensus 4 IaVE-~~Ls~i~~~L~~~GYeVv~l~~------~~~~~~~Da~VitG~d~n-------------~mgi~d---------- 53 (80)
T PRK03094 4 IGVE-QSLTDVQQALKQKGYEVVQLRS------EQDAQGCDCCVVTGQDSN-------------VMGIAD---------- 53 (80)
T ss_pred EEee-cCcHHHHHHHHHCCCEEEecCc------ccccCCcCEEEEeCCCcc-------------eecccc----------
Confidence 4565 6778999999999999988752 112323333334554433 244422
Q ss_pred HHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016579 332 YVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 332 ~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
.. .+.||||.++++.||+-..|-+.+
T Consensus 54 -------------~~-t~~pVI~A~G~TaeEI~~~ve~r~ 79 (80)
T PRK03094 54 -------------TS-TKGSVITASGLTADEICQQVESRL 79 (80)
T ss_pred -------------cc-cCCcEEEcCCCCHHHHHHHHHHhh
Confidence 12 368999999999999998886543
No 334
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=49.10 E-value=11 Score=37.08 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=25.0
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccC
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM 280 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~PLVp 280 (387)
|.++|-|.||||=|+.-|+ ++| +|+=|=.-+
T Consensus 4 i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 4 LSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 6789999999999998877 678 887665444
No 335
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.02 E-value=1.2e+02 Score=30.46 Aligned_cols=148 Identities=19% Similarity=0.227 Sum_probs=84.3
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
..++.+..|.|.-+ ....++.-...+..+ +++++.+.||---+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 32 ~p~Laii~vg~d~a--s~~Yv~~k~k~~~~~----Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~ 105 (285)
T PRK14189 32 QPGLAVILVGDNPA--SQVYVRNKVKACEDN----GFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHID 105 (285)
T ss_pred CCeEEEEEeCCCch--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCC
Confidence 44577888877654 344455444444432 36788899998888999999999885543 56655 4421 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.+..-.-+++| |=|.|. +..|. .|.+. -.| ..| .|+=--++|= |. +|....
T Consensus 106 ~~~i~~~I~p~KDV---DGl~~~n~g~l~--~~~~~-~~P-cTp--------------~aii~lL~~~-~i---~l~Gk~ 160 (285)
T PRK14189 106 SHKVIEAIAPEKDV---DGFHVANAGALM--TGQPL-FRP-CTP--------------YGVMKMLESI-GI---PLRGAH 160 (285)
T ss_pred HHHHHhhcCcccCc---ccCChhhhhHhh--CCCCC-CcC-CCH--------------HHHHHHHHHc-CC---CCCCCE
Confidence 22233333333333 555554 22221 23221 001 122 1111111110 12 667788
Q ss_pred EEEEccCCC-CCChhhHHhhhcCceee
Q 016579 249 IILSGVSRT-GKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRT-sKTPlSmYLA~~GyKVA 274 (387)
+++||-|.+ || |++++|.++|..|.
T Consensus 161 vvViGrs~iVGk-Pla~lL~~~~atVt 186 (285)
T PRK14189 161 AVVIGRSNIVGK-PMAMLLLQAGATVT 186 (285)
T ss_pred EEEECCCCccHH-HHHHHHHHCCCEEE
Confidence 999999999 65 99999999997775
No 336
>PRK07411 hypothetical protein; Validated
Probab=48.82 E-value=56 Score=33.70 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=52.3
Q ss_pred ccEEEEEeCChHH-HHHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016579 97 GKSIYMVSDGTGW-TAEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (387)
Q Consensus 97 ~~~IfiVSDsTGe-TAe~v~~AaL~QF~~~~v~~~~~~~~~~~p-~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l 174 (387)
.+++++=.+..|. -|+.+++.+...+|++ ++..++ .++ .+.+.+++.. --+|+.+.-+.+.|..+
T Consensus 79 ~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v--------~v~~~~~~~~-~~~~~~~~~~----~D~Vvd~~d~~~~r~~l 145 (390)
T PRK07411 79 QRQVIHGTSWVGKPKIESAKNRILEINPYC--------QVDLYETRLS-SENALDILAP----YDVVVDGTDNFPTRYLV 145 (390)
T ss_pred CcCcccChHHCCCcHHHHHHHHHHHHCCCC--------eEEEEecccC-HHhHHHHHhC----CCEEEECCCCHHHHHHH
Confidence 4666664444564 4555666666667763 344444 343 4455555543 24999999999999999
Q ss_pred HHHHHHcCCCEee
Q 016579 175 KKACELWGIPSTD 187 (387)
Q Consensus 175 ~~~~~~~gi~~vD 187 (387)
.+.|.+.++|.|.
T Consensus 146 n~~~~~~~~p~v~ 158 (390)
T PRK07411 146 NDACVLLNKPNVY 158 (390)
T ss_pred HHHHHHcCCCEEE
Confidence 9999999999883
No 337
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=48.72 E-value=9.7 Score=35.54 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|.+.|.|+||||=+|-.|+..
T Consensus 2 i~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999999954
No 338
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=48.54 E-value=9.7 Score=34.91 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.4
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|.|+|.|++|||=++=.|++.
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999843
No 339
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=48.36 E-value=18 Score=34.20 Aligned_cols=44 Identities=39% Similarity=0.616 Sum_probs=33.4
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeeccccCCCCCCccccccCCCcEEEEec
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTI 301 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTI 301 (387)
|.+-|..++|||-++.-+| ++||||.-+ ++|++. +.+|-+|.+|
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf-~t~EVR--------~gGkR~GF~I 55 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGF-ITPEVR--------EGGKRIGFKI 55 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeE-Eeeeee--------cCCeEeeeEE
Confidence 7889999999999999776 789999987 444443 4456666654
No 340
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=48.25 E-value=3.6e+02 Score=28.58 Aligned_cols=108 Identities=23% Similarity=0.292 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhC-C--CEEEEEc-----CCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCC
Q 016579 143 DVEQLMVIIKQAAKD-G--AMLVYTL-----ADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGR 214 (387)
Q Consensus 143 t~e~l~~ii~~a~~~-~--~iV~~Tl-----vd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~ 214 (387)
..++|.+.|.++.+. + .|+++|- +-.++...+++.-++.|+|++-+ ..||.
T Consensus 103 g~~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~~pvi~v---------------------~t~Gf 161 (475)
T PRK14478 103 GEKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEKFGIPVIPV---------------------NSPGF 161 (475)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHhhCCCEEEE---------------------ECCCc
Confidence 567888888877442 2 4555553 33455556665555567777633 14554
Q ss_pred CCCCcHHHHhhhhhh-hhhhhCCCCCCCCCCCcCcEEEEccCCC-CC-ChhhHHhhhcCceee
Q 016579 215 NFPLSEEYFRRIEAI-EFTIKQDDGALPQNLQKADIILSGVSRT-GK-TPLSIYLAQKGYKVA 274 (387)
Q Consensus 215 ~~~ld~~YF~RIeAI-eFavkhDDG~~~~~L~~ADIVLvGVSRT-sK-TPlSmYLA~~GyKVA 274 (387)
......-|..=.+|| +.-+.. ..+..-..-.|-|||-... |. .=+.-+|...|++|-
T Consensus 162 ~g~~~~G~~~a~~al~~~l~~~---~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~ 221 (475)
T PRK14478 162 VGNKNLGNKLAGEALLDHVIGT---VEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRVV 221 (475)
T ss_pred ccchhhhHHHHHHHHHHHHhcc---CCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeEE
Confidence 333334565555555 222211 1122222356889984321 21 123356667787765
No 341
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=48.22 E-value=25 Score=40.00 Aligned_cols=69 Identities=23% Similarity=0.234 Sum_probs=38.6
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCC-CCCCcCcEE-EEccCCCCCChhhHHh
Q 016579 189 LGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALP-QNLQKADII-LSGVSRTGKTPLSIYL 266 (387)
Q Consensus 189 lgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~-~~L~~ADIV-LvGVSRTsKTPlSmYL 266 (387)
|.-.+..|++.+|...-- .-| +.=-+.++.|..-+..=|-.-. .||..--|+ |.|.++||||-||+.+
T Consensus 11 ~~~~~~~~~~~~g~~~~~----~l~------~~~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~ 80 (790)
T PRK09519 11 LELAVAQIEKSYGKGSVM----RLG------DEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHA 80 (790)
T ss_pred HHHHHHHHHHHhccchhc----ccc------cccccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHH
Confidence 556788888888877631 111 1101122222222222222222 466666655 7799999999999776
Q ss_pred h
Q 016579 267 A 267 (387)
Q Consensus 267 A 267 (387)
+
T Consensus 81 ~ 81 (790)
T PRK09519 81 V 81 (790)
T ss_pred H
Confidence 5
No 342
>PRK07667 uridine kinase; Provisional
Probab=48.18 E-value=13 Score=33.99 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.2
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|-|=|.|++|||.++-.|++
T Consensus 20 IgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 55678999999999999984
No 343
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=48.10 E-value=10 Score=39.56 Aligned_cols=35 Identities=40% Similarity=0.582 Sum_probs=27.7
Q ss_pred CCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 242 QNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 242 ~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
-.+...-|+|+|.++||||=+.-.||.. .|.|++.
T Consensus 104 ~~~~~~~iLl~Gp~GtGKT~lAr~lA~~----l~~pf~~ 138 (412)
T PRK05342 104 VELQKSNILLIGPTGSGKTLLAQTLARI----LDVPFAI 138 (412)
T ss_pred cccCCceEEEEcCCCCCHHHHHHHHHHH----hCCCcee
Confidence 3456678999999999999999999943 3566663
No 344
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=48.04 E-value=13 Score=34.38 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=27.0
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
|-|.|-.+||||=.|=||+++|++|-+---+-
T Consensus 3 IglTG~igsGKStv~~~l~~~G~~vidaD~i~ 34 (180)
T PF01121_consen 3 IGLTGGIGSGKSTVSKILAELGFPVIDADEIA 34 (180)
T ss_dssp EEEEESTTSSHHHHHHHHHHTT-EEEEHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHCCCCEECccHHH
Confidence 56889999999999999999999998766553
No 345
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=47.71 E-value=62 Score=32.92 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=48.7
Q ss_pred ccEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Q 016579 97 GKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAK 175 (387)
Q Consensus 97 ~~~IfiVSDsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~ 175 (387)
.+++++--+..|.. |+.+++.+..-.|++ +++.+. -.+ +.+.+.++++. --+|+-+.-+.+.|..+.
T Consensus 69 ~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v------~v~~~~-~~i-~~~~~~~~~~~----~DvVvd~~d~~~~r~~~n 136 (355)
T PRK05597 69 HRQVIHSTAGVGQPKAESAREAMLALNPDV------KVTVSV-RRL-TWSNALDELRD----ADVILDGSDNFDTRHLAS 136 (355)
T ss_pred ccCcccChhHCCChHHHHHHHHHHHHCCCc------EEEEEE-eec-CHHHHHHHHhC----CCEEEECCCCHHHHHHHH
Confidence 45555544455643 444444444444543 333322 133 34455555533 249999999999999999
Q ss_pred HHHHHcCCCEee
Q 016579 176 KACELWGIPSTD 187 (387)
Q Consensus 176 ~~~~~~gi~~vD 187 (387)
+.|.++++|+|.
T Consensus 137 ~~c~~~~ip~v~ 148 (355)
T PRK05597 137 WAAARLGIPHVW 148 (355)
T ss_pred HHHHHcCCCEEE
Confidence 999999999885
No 346
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=47.64 E-value=12 Score=32.11 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.0
Q ss_pred cCcEEEEccCCCCCChhhHHhhhc
Q 016579 246 KADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
..-|+|+|.+++|||-+--+|...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 466999999999999999988854
No 347
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=47.47 E-value=18 Score=35.58 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=24.3
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016579 248 DIILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA----~~GyKVAN~PL 278 (387)
=|.++|.+++|||=|+--|+ ..|+||+-+=+
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~ 70 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAV 70 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 47889999999999877655 56999985433
No 348
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=47.43 E-value=1e+02 Score=28.36 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=25.1
Q ss_pred HHHHHhhhCCCCcEEeCCCc---cHHHHHHHHHHHHhcc
Q 016579 339 FAGRIFAQNPVWPVIEVTGK---AIEETAAVVLRLYHDR 374 (387)
Q Consensus 339 ~A~~lf~k~~g~pvIDVT~k---SIEEtAa~Il~~~~~r 374 (387)
.++++.+++ +|+++.++.+ .|+|.=..|.+.+.++
T Consensus 131 ~~~~~~~~~-~~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 131 EAEKLAKDL-GMKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHh-CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 345566665 8999998765 8888888887766544
No 349
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.34 E-value=2.1e+02 Score=29.02 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=84.3
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
..++.++.|.|.-+. ...++.-...+..+ +++++.+.+|.-.+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 31 ~P~LaiI~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~ 104 (293)
T PRK14185 31 RPHLAAILVGHDGGS--ETYVANKVKACEEC----GFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHIS 104 (293)
T ss_pred CCeEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCC
Confidence 445778888776653 44444444444432 35788899999989999999999886554 56665 3321 11
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.+..-.-+++ ||=|.|. +..|. .|. +.-.| ..| .|+=.=|+|- |. +|.-.+
T Consensus 105 ~~~i~~~I~p~KD---VDGl~~~N~g~l~--~~~-~~~~P-cTp--------------~av~~lL~~~-~i---~l~GK~ 159 (293)
T PRK14185 105 EQKVIEAIDYRKD---VDGFHPINVGRMS--IGL-PCFVS-ATP--------------NGILELLKRY-HI---ETSGKK 159 (293)
T ss_pred HHHHHhccCcccC---cCCCCHhhHHHHh--CCC-CCCCC-CCH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 2223333333333 3666665 22332 232 11111 122 1111112111 11 366678
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
+++||-|.+==-|++++|.++||
T Consensus 160 vvViGrS~iVGkPla~lL~~~~~ 182 (293)
T PRK14185 160 CVVLGRSNIVGKPMAQLMMQKAY 182 (293)
T ss_pred EEEECCCccchHHHHHHHHcCCC
Confidence 99999999988999999999874
No 350
>PRK06851 hypothetical protein; Provisional
Probab=47.32 E-value=28 Score=36.05 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=69.5
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec--cccC---------CC-------CCCccccc-cCCCcEEEE---ecC
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV--PIVM---------GV-------ELPKSLFQ-VDPEKVFGL---TIN 302 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~--PLVp---------~v-------~lP~eLf~-v~~~KI~GL---TId 302 (387)
++|-|.++||||=+...++ .+||+|.=| |+-| +. .-|-.++. .+...++-| -+|
T Consensus 217 ~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdslD~viIPel~~ai~d~t~ph~~~P~~~g~e~i~ly~~~~d 296 (367)
T PRK06851 217 YFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSLDMVIIPELNFAIFDSTAPHEYFPSREGDEIIDMYDELID 296 (367)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCcceEEeccCCEEEEeCCCCcccCCCCCcceeeechhhhcC
Confidence 8999999999999998877 579988765 3444 21 12333321 122467777 899
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEE-eCCCccHHHHHHHHHHHHhc
Q 016579 303 PLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-EVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 303 PerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvI-DVT~kSIEEtAa~Il~~~~~ 373 (387)
++.|..-+++-. ... ...+.-+++..+=|..|+.+..++ -.-+| .+--..+++....|++.+..
T Consensus 297 ~~~l~~~~~eI~-~~~-----~~~~~~~~~A~~~l~~Ak~~hD~l-E~~Y~~amDf~kv~~~~~~l~~~i~~ 361 (367)
T PRK06851 297 PGTDEKYAEEIK-KAK-----ERYKAKLNEATSFLAKAKALHDKL-EEIYIPAMDFSKVDAIKEEILERILR 361 (367)
T ss_pred HHhHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999988765433 221 112344455556666666665443 22222 22334566666666665543
No 351
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=47.30 E-value=80 Score=27.25 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=36.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016579 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+.+=+.+..++.++..|...+||++..-+ --..|...+|.++
T Consensus 45 ViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~-t~~eLG~A~Gk~~ 88 (108)
T PTZ00106 45 VIISNNCPPIRRSEIEYYAMLSKTGVHHYAG-NNNDLGTACGRHF 88 (108)
T ss_pred EEEeCCCCHHHHHHHHHHHhhcCCCEEEeCC-CHHHHHHHhCCcc
Confidence 7778888899999999999999999986422 4488888999776
No 352
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=47.22 E-value=13 Score=32.53 Aligned_cols=27 Identities=41% Similarity=0.541 Sum_probs=19.3
Q ss_pred EccCCCCCChhhHHhh----hcCceeeeccc
Q 016579 252 SGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (387)
Q Consensus 252 vGVSRTsKTPlSmYLA----~~GyKVAN~PL 278 (387)
=|-.++|||-++..|| ++|+||+=+=+
T Consensus 5 ~~kGG~GKTt~a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 5 SGKGGVGKTTIAANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred cCCCCccHHHHHHHHHhcccccccccccccc
Confidence 3456899999988776 67999874433
No 353
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=47.20 E-value=35 Score=29.24 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=39.5
Q ss_pred eccccC-CHHHHHHHHHHHHhCC--CEEEEEc-CCHHHHHHHHHHHHHcCCCEeec
Q 016579 137 LFSGID-DVEQLMVIIKQAAKDG--AMLVYTL-ADPSMAESAKKACELWGIPSTDV 188 (387)
Q Consensus 137 ~~p~V~-t~e~l~~ii~~a~~~~--~iV~~Tl-vd~elr~~l~~~~~~~gi~~vDl 188 (387)
-+.+-+ +.+.+.+.+++..+.+ |+++.+- --+++=+.+.+.|.++++|.+.+
T Consensus 50 g~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~i 105 (123)
T PF07905_consen 50 GYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEI 105 (123)
T ss_pred CcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEe
Confidence 345555 4666888999987777 6888665 34578888889999999998864
No 354
>PLN03108 Rab family protein; Provisional
Probab=47.18 E-value=38 Score=31.07 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCc
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
-|+|||.+++|||=|...|++..+
T Consensus 8 kivivG~~gvGKStLi~~l~~~~~ 31 (210)
T PLN03108 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 399999999999999998885433
No 355
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=47.05 E-value=11 Score=37.85 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=27.7
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
|.|||-+.+|||-|---|.+...+|||||+.-
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT 32 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTT 32 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcc
Confidence 57999999999988777777778999999963
No 356
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=46.94 E-value=14 Score=31.37 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
|+++|.+++|||=+.--|.+..+
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 79999999999999877775554
No 357
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.82 E-value=40 Score=29.69 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHc-CCCEeecchHHH
Q 016579 168 PSMAESAKKACELW-GIPSTDVLGPIT 193 (387)
Q Consensus 168 ~elr~~l~~~~~~~-gi~~vDllgp~i 193 (387)
..+.+.+++.|.+. ++.++|+.+++.
T Consensus 136 ~~~n~~~~~~a~~~~~~~~id~~~~~~ 162 (191)
T cd01836 136 RLLNRALERLASEAPRVTLLPATGPLF 162 (191)
T ss_pred HHHHHHHHHHHhcCCCeEEEecCCccc
Confidence 36788889999998 999999988764
No 358
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=46.81 E-value=14 Score=32.91 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=23.7
Q ss_pred EEEEccCCCCCChhhHHhhh----cCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLAQ----KGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~GyKVAN~ 276 (387)
|||.|..++|||=++=-||+ .|++|.-+
T Consensus 6 IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 6 IVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 89999999999999999993 37887643
No 359
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=46.75 E-value=13 Score=33.97 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=17.8
Q ss_pred EEEEccCCCCCChhhHHh-h----hcCce-eeecc-cc
Q 016579 249 IILSGVSRTGKTPLSIYL-A----QKGYK-VANVP-IV 279 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYL-A----~~GyK-VAN~P-LV 279 (387)
.++.|..|+|||=.+++. . .+|-+ ++|+| |-
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~tni~gL~ 40 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYTNIPGLN 40 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE--TTB-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEEccCCcc
Confidence 478999999999988777 3 34655 67888 44
No 360
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=46.64 E-value=15 Score=37.91 Aligned_cols=26 Identities=42% Similarity=0.607 Sum_probs=20.6
Q ss_pred EEEEccCCCCCChhh----HHhhhcCceee
Q 016579 249 IILSGVSRTGKTPLS----IYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlS----mYLA~~GyKVA 274 (387)
|.+|||.++|||-+. -||-+.|+||.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~~Vl 171 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGKSVL 171 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCCeEE
Confidence 788999999999865 45557788873
No 361
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=46.58 E-value=71 Score=30.39 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=57.6
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Q 016579 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAK 175 (387)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~ 175 (387)
-.+.+++=.+-.|..-..+++..+.+... .++...+..--+.+.+.+++ ...-+|+..+.|-+-|..+.
T Consensus 70 L~rq~~~~~~dig~~Ka~~a~~~l~~ln~-------~v~v~~~~~~l~~~~~~~~~----~~~d~v~d~~dn~~~r~~iN 138 (254)
T COG0476 70 LQRQFLFTEADVGKPKAEVAAKALRKLNP-------LVEVVAYLERLDEENAEELI----AQFDVVLDCTDNFETRYLIN 138 (254)
T ss_pred cCceeeecccccCCcHHHHHHHHHHHhCC-------CCeEEEeecccChhhHHHHh----ccCCEEEECCCCHHHHHHHH
Confidence 55788888888888544455455556532 24455555544555554443 34469999999999999999
Q ss_pred HHHHHcCCCEeec
Q 016579 176 KACELWGIPSTDV 188 (387)
Q Consensus 176 ~~~~~~gi~~vDl 188 (387)
.+|..+++|+++.
T Consensus 139 ~~~~~~~~pli~~ 151 (254)
T COG0476 139 DACVKLGIPLVHG 151 (254)
T ss_pred HHHHHhCCCeEee
Confidence 9999999999883
No 362
>PRK08760 replicative DNA helicase; Provisional
Probab=46.33 E-value=1.1e+02 Score=32.58 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCCCCcCcEEE-EccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCC
Q 016579 241 PQNLQKADIIL-SGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGF 319 (387)
Q Consensus 241 ~~~L~~ADIVL-vGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl 319 (387)
..||...|+|+ .|-+..|||=+++-+|....+-.+ .+--+|.|.++++.|.. |+.+++-
T Consensus 223 t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g----------------~~V~~fSlEMs~~ql~~----Rl~a~~s 282 (476)
T PRK08760 223 TAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSK----------------KGVAVFSMEMSASQLAM----RLISSNG 282 (476)
T ss_pred hcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcC----------------CceEEEeccCCHHHHHH----HHHHhhC
Confidence 35778888766 577899999999999844321111 11226777777776664 4433321
Q ss_pred CCC----CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016579 320 RDE----IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 320 ~~~----~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
.-+ ......+.+ ...+..|-..+.+. .+-+-|..+.+++++.+.+..+.
T Consensus 283 ~i~~~~i~~g~l~~~e--~~~~~~a~~~l~~~-~l~I~d~~~~t~~~I~~~~r~l~ 335 (476)
T PRK08760 283 RINAQRLRTGALEDED--WARVTGAIKMLKET-KIFIDDTPGVSPEVLRSKCRRLK 335 (476)
T ss_pred CCcHHHHhcCCCCHHH--HHHHHHHHHHHhcC-CEEEeCCCCCCHHHHHHHHHHHH
Confidence 000 000111110 01123333334443 56666777778888877776554
No 363
>PLN02318 phosphoribulokinase/uridine kinase
Probab=46.33 E-value=15 Score=40.89 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=39.1
Q ss_pred CCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhc
Q 016579 216 FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 216 ~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~ 269 (387)
..+|.-||--|.|++.--++++|.-. |-|.|.|++|||=++-.|+..
T Consensus 42 ~sfd~g~~~~ira~qlL~~~~~~riI-------IGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 42 LSFEKGFFVVIRACQLLAQKNDGIIL-------VGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred cccccchhhhhHHHHHHHhcCCCeEE-------EEEECCCCCcHHHHHHHHHhh
Confidence 45678899999999998887775432 778999999999999999954
No 364
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=46.28 E-value=1.5e+02 Score=30.72 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=88.1
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
..++.+++|.|.-... ..++.-....+.+ +++++.+.||---+++++.+.|+++.++. +|+++ =|-. -+
T Consensus 86 ~P~LaiIlvGddpaS~--~Yv~~k~K~a~~~----GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid 159 (345)
T PLN02897 86 VPGLAVVLVGQQRDSQ--TYVRNKIKACEET----GIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLD 159 (345)
T ss_pred CCeEEEEEeCCChHHH--HHHHHHHHHHHhc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 4567889998876543 5566555555443 46788999998889999999999986554 56665 3421 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhC-CCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcC
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLG-VSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKA 247 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG-~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~A 247 (387)
-.+.++...-+++ ||=|.|. +..|. +| ..+.-.| ..| .|+=-=|+|- |. +|.-.
T Consensus 160 ~~~i~~~I~p~KD---VDGl~p~N~G~L~--~~~~~~~~~P-CTp--------------~avi~LL~~~-~i---~l~GK 215 (345)
T PLN02897 160 ESKILNMVRLEKD---VDGFHPLNVGNLA--MRGREPLFVS-CTP--------------KGCVELLIRS-GV---EIAGK 215 (345)
T ss_pred HHHHHhccCcccC---ccCCCHHHHHHHh--cCCCCCCCcC-CCH--------------HHHHHHHHHh-CC---CCCCC
Confidence 2223333333433 3666655 22232 22 1111101 122 1111111211 22 46667
Q ss_pred cEEEEccCCCCCChhhHHhhhcCcee
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
++|+||-|.+==-|++++|.++|-.|
T Consensus 216 ~vvVIGRS~iVGkPla~LL~~~~ATV 241 (345)
T PLN02897 216 NAVVIGRSNIVGLPMSLLLQRHDATV 241 (345)
T ss_pred EEEEECCCccccHHHHHHHHHCCCEE
Confidence 89999999999999999999998666
No 365
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.26 E-value=1.4e+02 Score=30.07 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=84.9
Q ss_pred CccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HHH
Q 016579 96 EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PSM 170 (387)
Q Consensus 96 ~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~el 170 (387)
..+.++.|.|--. ....++.-...+... ++.++.+.||---+++++.+.|+++.++. +|+++ =|-. -+-
T Consensus 34 P~Laii~vg~d~a--s~~Yv~~k~k~~~~~----Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~ 107 (284)
T PRK14177 34 PKLATILVGNNPA--SETYVSMKVKACHKV----GMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDE 107 (284)
T ss_pred CeEEEEEeCCChh--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCH
Confidence 3567777876654 344555555555432 46788999998888999999999885543 55554 4421 122
Q ss_pred HHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEE
Q 016579 171 AESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADII 250 (387)
Q Consensus 171 r~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIV 250 (387)
.+.+..-.-+++ ||=|.|. +.-.-+.|.+. -.| ..| ..= |+=++| | |. +|.-.+++
T Consensus 108 ~~i~~~I~p~KD---VDGl~~~-n~g~l~~g~~~-~~P-cTp-------~av---i~ll~~---y--~i---~l~Gk~vv 163 (284)
T PRK14177 108 RAAFDRIALEKD---VDGVTTL-SFGKLSMGVET-YLP-CTP-------YGM---VLLLKE---Y--GI---DVTGKNAV 163 (284)
T ss_pred HHHHhccCcccc---cccCChh-hHHHHHcCCCC-CCC-CCH-------HHH---HHHHHH---h--CC---CCCCCEEE
Confidence 223333333333 3656663 11111233221 111 122 111 111221 1 22 56667899
Q ss_pred EEccCCCCCChhhHHhhhcCceee
Q 016579 251 LSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 251 LvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
+||-|.+==-||+++|.++|.-|.
T Consensus 164 ViGrS~iVGkPla~lL~~~~atVt 187 (284)
T PRK14177 164 VVGRSPILGKPMAMLLTEMNATVT 187 (284)
T ss_pred EECCCCcchHHHHHHHHHCCCEEE
Confidence 999999999999999999985554
No 366
>PRK06851 hypothetical protein; Provisional
Probab=46.24 E-value=54 Score=34.01 Aligned_cols=115 Identities=19% Similarity=0.156 Sum_probs=63.6
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec--cccC----------------CCCCCccccccCCC---cEE--EEec
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV--PIVM----------------GVELPKSLFQVDPE---KVF--GLTI 301 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~--PLVp----------------~v~lP~eLf~v~~~---KI~--GLTI 301 (387)
+||-|.++||||-|.-=|+ .+||.|-=+ |+-| +-..|-.++-..++ .++ |-..
T Consensus 33 ~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgviip~l~~aivDgtaph~~~P~~pgav~eiinL~~~~ 112 (367)
T PRK06851 33 FILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPELKIAILDGTAPHVVDPKAPGAVEEIINLGDAW 112 (367)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeEEecCCCEEEEcCCCcCcCCCCCCCcceEEEEHHHHh
Confidence 8999999999999987644 568886644 4333 11223222221222 455 4457
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHhhhCCCCcEEe-CCCccHHHHHHHHHHHH
Q 016579 302 NPLVLQSIRKARARSLGFRDEIRSNY-SEMDYVREELEFAGRIFAQNPVWPVIE-VTGKAIEETAAVVLRLY 371 (387)
Q Consensus 302 dPerL~~IR~eRlk~lGl~~~~~S~Y-A~~e~I~~EL~~A~~lf~k~~g~pvID-VT~kSIEEtAa~Il~~~ 371 (387)
|.+.|.+-|++ +..+. ..| .-.++..+.|..|.++..+. -...++ +....+.|.+..+++.+
T Consensus 113 d~~~l~~~k~e-I~~~~------~~~~~~~~~Ay~~l~~A~~ihdd~-e~~y~~~md~~k~~~~~~~l~~~l 176 (367)
T PRK06851 113 DEDKLRKHKEE-ILKIN------EEISRCFQRAYEYLNEALAIHDEW-EKIYIENMDFAKANELTDELIQEL 176 (367)
T ss_pred ChHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88888777653 22221 112 23467777888888877653 222221 22233444555555433
No 367
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=46.22 E-value=8 Score=37.41 Aligned_cols=13 Identities=54% Similarity=0.843 Sum_probs=11.9
Q ss_pred EEEEccCCCCCCh
Q 016579 249 IILSGVSRTGKTP 261 (387)
Q Consensus 249 IVLvGVSRTsKTP 261 (387)
|+|+|.+|+|||=
T Consensus 2 iLLmG~~~SGKTS 14 (232)
T PF04670_consen 2 ILLMGPRRSGKTS 14 (232)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEEcCCCCChhh
Confidence 7999999999984
No 368
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.94 E-value=62 Score=36.84 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=47.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCC-CcEEEEecChhHHHHHHHHH--HhhcCCCCCCCC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDP-EKVFGLTINPLVLQSIRKAR--ARSLGFRDEIRS 325 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~-~KI~GLTIdPerL~~IR~eR--lk~lGl~~~~~S 325 (387)
|.|||++++|||=|.-=||.+ |+ ..+. +||.=++.|..|.-.+-+-+ .+.+|++- ..
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~-~~-----------------~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv--~~ 247 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAAR-CV-----------------AREGADQLALLTTDSFRIGALEQLRIYGRILGVPV--HA 247 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhh-HH-----------------HHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc--cc
Confidence 679999999999999888853 11 0122 23434466666644432211 12345432 12
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCcc
Q 016579 326 NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKA 359 (387)
Q Consensus 326 ~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kS 359 (387)
.| +.+.+++.|+. ++.. ..-+||+.+++
T Consensus 248 ~~-~~~~l~~al~~----~~~~-D~VLIDTAGRs 275 (767)
T PRK14723 248 VK-DAADLRFALAA----LGDK-HLVLIDTVGMS 275 (767)
T ss_pred cC-CHHHHHHHHHH----hcCC-CEEEEeCCCCC
Confidence 23 44445444443 4443 67788888865
No 369
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=45.89 E-value=37 Score=36.71 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=61.5
Q ss_pred EeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcC
Q 016579 103 VSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWG 182 (387)
Q Consensus 103 VSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~g 182 (387)
|.-.+|.|-....+++|-|=|+ +..+--|++.|.+..+++.+ ..|.+|+.||--.+....+.+... +|
T Consensus 366 v~~~~g~~~~~~l~~~LR~dPD----------vI~vGEiRd~eta~~a~~aa-~tGHlv~tTlHa~~a~~~i~Rl~~-lg 433 (564)
T TIGR02538 366 VNPKIGLTFAAALRSFLRQDPD----------IIMVGEIRDLETAEIAIKAA-QTGHLVLSTLHTNDAPETLARLVN-MG 433 (564)
T ss_pred eccccCCCHHHHHHHHhccCCC----------EEEeCCCCCHHHHHHHHHHH-HcCCcEEEEeccCCHHHHHHHHHH-cC
Confidence 4446689999999999999986 45678899999998888754 577899999999999999988864 67
Q ss_pred CCEeecchHH
Q 016579 183 IPSTDVLGPI 192 (387)
Q Consensus 183 i~~vDllgp~ 192 (387)
++-..+-+.+
T Consensus 434 ~~~~~la~~l 443 (564)
T TIGR02538 434 IAPFNIASSV 443 (564)
T ss_pred CCHHHHHHHH
Confidence 7655544433
No 370
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=45.85 E-value=44 Score=28.53 Aligned_cols=20 Identities=40% Similarity=0.414 Sum_probs=17.2
Q ss_pred cEEEEccCCCCCChhhHHhh
Q 016579 248 DIILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA 267 (387)
-|+++|.+++|||=+--.|-
T Consensus 5 kv~vvG~~~~GKTsli~~l~ 24 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFK 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998877664
No 371
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.77 E-value=1e+02 Score=31.13 Aligned_cols=146 Identities=17% Similarity=0.228 Sum_probs=84.1
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEEEcCCHHHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVYTLADPSMA 171 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~Tlvd~elr 171 (387)
...+.++.|.|.-+. ...++.-...+..+ +++++.+.||--.+.+++.+.|+++.++. +|+++-=.-+.+.
T Consensus 26 ~P~LaiI~vg~d~as--~~Yv~~k~k~~~~~----Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~ 99 (287)
T PRK14181 26 APGLAVVLIGNDPAS--EVYVGMKVKKATDL----GMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLD 99 (287)
T ss_pred CCcEEEEEeCCCHHH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcC
Confidence 456788888877643 34444444444332 36788999999889999999999985544 6666532222222
Q ss_pred --HHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 172 --ESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 172 --~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
+.+....-+++| |-|.|. +..| ++|..+.-.| ..|-....|-+.| |. +|...+
T Consensus 100 ~~~i~~~I~p~KDV---DGl~p~n~g~l--~~g~~~~~~P-cTp~avi~lL~~~---------------~i---~l~Gk~ 155 (287)
T PRK14181 100 AQAILQAISPDKDV---DGLHPVNMGKL--LLGETDGFIP-CTPAGIIELLKYY---------------EI---PLHGRH 155 (287)
T ss_pred HHHHHhccCcccCc---ccCChhhHHHH--hcCCCCCCCC-CCHHHHHHHHHHh---------------CC---CCCCCE
Confidence 233333333333 555543 1122 2344221111 1221111111112 22 566678
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~G 270 (387)
+++||=|.+==-|++++|.++|
T Consensus 156 vvViGrS~iVGkPla~lL~~~~ 177 (287)
T PRK14181 156 VAIVGRSNIVGKPLAALLMQKH 177 (287)
T ss_pred EEEECCCccchHHHHHHHHhCc
Confidence 9999999998889999999984
No 372
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.76 E-value=1.2e+02 Score=30.77 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=84.9
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
..++.+..|.|.-.. ...++.-...++.+ +++++.+.||--.+++++.+.|+++.+++ +|+++ -|-. -+
T Consensus 33 ~P~LaiI~vg~d~as--~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~ 106 (301)
T PRK14194 33 EPALAVILVGNDPAS--QVYVRNKILRAEEA----GIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHID 106 (301)
T ss_pred CCeEEEEEeCCChhH--HHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCC
Confidence 445778888776543 33344333333322 35788899998889999999999986554 56665 4421 11
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.+....-+++ ||=|.|. +..| +.|.+. -.| ..| .||=-=++|- |. +|...+
T Consensus 107 ~~~i~~~I~p~KD---VDGl~~~N~g~l--~~~~~~-~~P-cTp--------------~aii~lL~~~-~i---~l~Gk~ 161 (301)
T PRK14194 107 EARVLQAINPLKD---VDGFHSENVGGL--SQGRDV-LTP-CTP--------------SGCLRLLEDT-CG---DLTGKH 161 (301)
T ss_pred HHHHHhccCchhc---cCccChhhhhHH--hcCCCC-CCC-CcH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 1223333333333 3556655 2222 123221 001 122 1111111211 33 566678
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~ 276 (387)
|++||-|..==.|++++|.++|+.|.=+
T Consensus 162 V~vIG~s~ivG~PmA~~L~~~gatVtv~ 189 (301)
T PRK14194 162 AVVIGRSNIVGKPMAALLLQAHCSVTVV 189 (301)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 9999999777779999999999877543
No 373
>PRK13768 GTPase; Provisional
Probab=45.59 E-value=14 Score=35.59 Aligned_cols=30 Identities=37% Similarity=0.695 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhH----HhhhcCceeeeccc
Q 016579 249 IILSGVSRTGKTPLSI----YLAQKGYKVANVPI 278 (387)
Q Consensus 249 IVLvGVSRTsKTPlSm----YLA~~GyKVAN~PL 278 (387)
+++.|.+++|||=++. +|+++|.+|+=+=+
T Consensus 5 i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~ 38 (253)
T PRK13768 5 VFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNL 38 (253)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhcCCceEEEEC
Confidence 6889999999999664 55578988765533
No 374
>PRK08506 replicative DNA helicase; Provisional
Probab=45.32 E-value=2e+02 Score=30.49 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=60.4
Q ss_pred CCCCcCcEEE-EccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhh--cC
Q 016579 242 QNLQKADIIL-SGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARS--LG 318 (387)
Q Consensus 242 ~~L~~ADIVL-vGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~--lG 318 (387)
.||...|+|+ -|-++.|||=+++.+|....+ .+ .+--+|.|.++++.|.. |+-+ -|
T Consensus 187 ~G~~~G~LivIaarpg~GKT~fal~ia~~~~~-------~g----------~~V~~fSlEMs~~ql~~----Rlla~~s~ 245 (472)
T PRK08506 187 KGFNKGDLIIIAARPSMGKTTLCLNMALKALN-------QD----------KGVAFFSLEMPAEQLML----RMLSAKTS 245 (472)
T ss_pred CCCCCCceEEEEcCCCCChHHHHHHHHHHHHh-------cC----------CcEEEEeCcCCHHHHHH----HHHHHhcC
Confidence 5777787665 567899999999999954221 00 11236788888887764 3322 12
Q ss_pred CCCC--CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016579 319 FRDE--IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 372 (387)
Q Consensus 319 l~~~--~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~ 372 (387)
++.. ...... .+. ...+..|-.-+.+. .+-+.|..+.+++++.+.+.++..
T Consensus 246 v~~~~i~~~~l~-~~e-~~~~~~a~~~l~~~-~l~I~d~~~~ti~~I~~~~r~l~~ 298 (472)
T PRK08506 246 IPLQNLRTGDLD-DDE-WERLSDACDELSKK-KLFVYDSGYVNIHQVRAQLRKLKS 298 (472)
T ss_pred CCHHHHhcCCCC-HHH-HHHHHHHHHHHHcC-CeEEECCCCCCHHHHHHHHHHHHH
Confidence 2100 000111 111 11233444444553 566677778888888888876543
No 375
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=45.15 E-value=12 Score=33.98 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=17.9
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|+|+|++|||=+.--|+.
T Consensus 6 i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999888884
No 376
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=45.02 E-value=15 Score=31.82 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=20.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYK 272 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyK 272 (387)
-|+++|.+++|||=|...|.+.-+.
T Consensus 6 ki~ivG~~~vGKTsli~~~~~~~~~ 30 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNKFN 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3899999999999998888754343
No 377
>PRK09165 replicative DNA helicase; Provisional
Probab=44.98 E-value=93 Score=33.22 Aligned_cols=123 Identities=21% Similarity=0.179 Sum_probs=66.2
Q ss_pred CCCCcCcEEE-EccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhc--C
Q 016579 242 QNLQKADIIL-SGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSL--G 318 (387)
Q Consensus 242 ~~L~~ADIVL-vGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~l--G 318 (387)
.||..-|+|+ .|-+++|||=+++-+|...-+--+-+..|... ...-+-.+--+|.|.++++.|.. |+-+. |
T Consensus 212 gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~--~~~~~g~~vl~fSlEMs~~ql~~----R~la~~s~ 285 (497)
T PRK09165 212 GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGS--KKAVNGGVVGFFSLEMSAEQLAT----RILSEQSE 285 (497)
T ss_pred CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhccccccccc--ccccCCCeEEEEeCcCCHHHHHH----HHHHHhcC
Confidence 4677777655 67889999999999984432222222222110 00000111237999999998876 33222 3
Q ss_pred CCCC--CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016579 319 FRDE--IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 319 l~~~--~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
++.. ......+ +.. ..+..|-..+.+. .+.+-|..+.+++++.+.|.++..+
T Consensus 286 v~~~~i~~~~l~~-~e~-~~l~~a~~~l~~~-~l~I~d~~~~ti~~i~~~ir~l~~~ 339 (497)
T PRK09165 286 ISSSKIRRGKISE-EDF-EKLVDASQELQKL-PLYIDDTPALSISQLRARARRLKRQ 339 (497)
T ss_pred CCHHHHhcCCCCH-HHH-HHHHHHHHHHhcC-CeEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3210 0001111 111 1233333334443 5777788888999999999766543
No 378
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=44.91 E-value=2.1e+02 Score=27.25 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=20.7
Q ss_pred hhhhhCCCCCCCCCCCc-----CcEEEEcc
Q 016579 230 EFTIKQDDGALPQNLQK-----ADIILSGV 254 (387)
Q Consensus 230 eFavkhDDG~~~~~L~~-----ADIVLvGV 254 (387)
++.+.-|-|.+++++.+ ||++++|=
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~aGad~iVvGs 202 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAADAGANVIVAGS 202 (228)
T ss_pred cCeEEECCCCCHHHHHHHHHcCCCEEEEch
Confidence 57788899999998854 79999993
No 379
>PRK07933 thymidylate kinase; Validated
Probab=44.85 E-value=17 Score=34.08 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
|++-|+.+||||-++--|+ .+|++|.-.
T Consensus 3 IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 3 IAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 7899999999999877666 568887643
No 380
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=44.78 E-value=24 Score=35.84 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=40.7
Q ss_pred chHHHHHHHHHhCCCCCCCCCCCCCCCCCCc-HHHHhhhhhhhhhhhCCCCCCCCCCCcCc-EEEEccCCCCCChhhHHh
Q 016579 189 LGPITEAIASHLGVSPSGLPRGAPGRNFPLS-EEYFRRIEAIEFTIKQDDGALPQNLQKAD-IILSGVSRTGKTPLSIYL 266 (387)
Q Consensus 189 lgp~i~~le~~lG~~p~~~~~~~pG~~~~ld-~~YF~RIeAIeFavkhDDG~~~~~L~~AD-IVLvGVSRTsKTPlSmYL 266 (387)
|...+..|++.+|...-- .-|...... +..=--+.+++.++- .| ||..=- +.|.|.++||||=|++-+
T Consensus 6 ~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~i~TGi~~LD~~Lg--~G----Glp~G~iteI~G~~GsGKTtLaL~~ 75 (321)
T TIGR02012 6 LEAALAQIEKQFGKGSIM----RLGEKSVMDVETISTGSLSLDLALG--VG----GLPRGRIIEIYGPESSGKTTLALHA 75 (321)
T ss_pred HHHHHHHHHHHcCcceeE----ECcccccccCceecCCCHHHHHHhc--CC----CCcCCeEEEEECCCCCCHHHHHHHH
Confidence 455677777777766532 112111111 111122456776663 23 454444 448899999999999987
Q ss_pred hhc
Q 016579 267 AQK 269 (387)
Q Consensus 267 A~~ 269 (387)
+..
T Consensus 76 ~~~ 78 (321)
T TIGR02012 76 IAE 78 (321)
T ss_pred HHH
Confidence 743
No 381
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=44.65 E-value=1.3e+02 Score=26.59 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCC
Q 016579 106 GTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGI 183 (387)
Q Consensus 106 sTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi 183 (387)
+.+.....-.+.++.|+. +++..++.-.+.+...+.++++...+ ++|+.+.....+. ..+.+.+.++
T Consensus 12 ~~~~~~~~g~~~~~~~~g---------~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~--~~~~l~~~~i 80 (264)
T cd01537 12 PFFAQVLKGIEEAAKAAG---------YQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT--IVKLARKAGI 80 (264)
T ss_pred hHHHHHHHHHHHHHHHcC---------CeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh--HHHHhhhcCC
Confidence 344555555666676763 34445555556677777777765444 6777665444443 4466678899
Q ss_pred CEeecch
Q 016579 184 PSTDVLG 190 (387)
Q Consensus 184 ~~vDllg 190 (387)
|+|-+-.
T Consensus 81 p~v~~~~ 87 (264)
T cd01537 81 PVVLVDR 87 (264)
T ss_pred CEEEecc
Confidence 9987644
No 382
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.33 E-value=1.2e+02 Score=30.12 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=17.7
Q ss_pred CcEEEEccCCCCCChhhHHhh
Q 016579 247 ADIILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA 267 (387)
--|.++|.+++|||=+..=||
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 468899999999999777666
No 383
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=44.30 E-value=10 Score=32.74 Aligned_cols=19 Identities=42% Similarity=0.550 Sum_probs=15.0
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016579 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
++|.|.+++|||=+.-.+.
T Consensus 27 ~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 27 LLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp EEE-B-TTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999988555
No 384
>PRK00698 tmk thymidylate kinase; Validated
Probab=44.24 E-value=13 Score=33.14 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|++.|++++|||=++=.|++
T Consensus 6 I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 6 ITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999985
No 385
>PRK00955 hypothetical protein; Provisional
Probab=44.17 E-value=50 Score=36.68 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=37.8
Q ss_pred CCCCCCcCcEEEEc------cCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEE
Q 016579 240 LPQNLQKADIILSG------VSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGL 299 (387)
Q Consensus 240 ~~~~L~~ADIVLvG------VSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GL 299 (387)
..+|+++.|||||- ..=-|=-=++=+|-..||+|++|+- |+..-+..+...-+.++|++
T Consensus 7 ~~~gw~~~d~i~v~gdayvdhp~fg~a~i~r~L~~~G~~v~ii~q-p~~~~~~~~~~~g~P~l~~~ 71 (620)
T PRK00955 7 KKRGWDELDFILVTGDAYVDHPSFGTAIIGRVLEAEGFRVGIIAQ-PNWRDLEDFKKLGKPRLFFL 71 (620)
T ss_pred HHcCCCccCEEEEeCcccccCCccHHHHHHHHHHHCCCEEEEecC-CCcCChHHHHhhCCCcEEEE
Confidence 34799999999971 0101112244566689999999954 55555556555556677776
No 386
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=44.13 E-value=43 Score=37.13 Aligned_cols=108 Identities=24% Similarity=0.287 Sum_probs=63.8
Q ss_pred CcCcEEEEccCCCCCChhhHHhhhcCceeeecc-ccCCCCCCccccccCCCcEEEEe--cChhHHHHHHHHHHhhcCCCC
Q 016579 245 QKADIILSGVSRTGKTPLSIYLAQKGYKVANVP-IVMGVELPKSLFQVDPEKVFGLT--INPLVLQSIRKARARSLGFRD 321 (387)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~P-LVp~v~lP~eLf~v~~~KI~GLT--IdPerL~~IR~eRlk~lGl~~ 321 (387)
..-=|||+|--++|||-|-|=|+.--| +-||| ..|++.+|+..| .+.--+.=.+ -+++....+|+| ++.+..
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef-~~~VP~rl~~i~IPadvt-Pe~vpt~ivD~ss~~~~~~~l~~E-irkA~v-- 82 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEF-VDAVPRRLPRILIPADVT-PENVPTSIVDTSSDSDDRLCLRKE-IRKADV-- 82 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhc-cccccccCCccccCCccC-cCcCceEEEecccccchhHHHHHH-HhhcCE--
Confidence 334499999999999999999996644 44555 446899997764 2222122222 234444454544 222222
Q ss_pred CCCCCC-----CCHHHHHH-HHHHHHHHhhhCCCCcEEeCCCc
Q 016579 322 EIRSNY-----SEMDYVRE-ELEFAGRIFAQNPVWPVIEVTGK 358 (387)
Q Consensus 322 ~~~S~Y-----A~~e~I~~-EL~~A~~lf~k~~g~pvIDVT~k 358 (387)
.-..| .++++|.. =|=.-+++|-+....|||=|-+|
T Consensus 83 -i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK 124 (625)
T KOG1707|consen 83 -ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNK 124 (625)
T ss_pred -EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeec
Confidence 12345 44555543 34556667754456899866555
No 387
>PF13173 AAA_14: AAA domain
Probab=44.11 E-value=14 Score=31.27 Aligned_cols=21 Identities=48% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
++|.|+-|+|||=+...+++.
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999888854
No 388
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=44.10 E-value=20 Score=39.48 Aligned_cols=38 Identities=32% Similarity=0.533 Sum_probs=29.0
Q ss_pred hhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCcee
Q 016579 226 IEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKV 273 (387)
Q Consensus 226 IeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA----~~GyKV 273 (387)
.+|+++++.+.+ -+++.|..+||||=|..-+. +.|++|
T Consensus 163 ~~Av~~~l~~~~----------~~lI~GpPGTGKT~t~~~ii~~~~~~g~~V 204 (637)
T TIGR00376 163 KEAVSFALSSKD----------LFLIHGPPGTGKTRTLVELIRQLVKRGLRV 204 (637)
T ss_pred HHHHHHHhcCCC----------eEEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 458999887632 47899999999999887655 357764
No 389
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=44.05 E-value=15 Score=31.98 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=29.0
Q ss_pred cCcEEEEccCCCCCChhhHHhh-hcCceeeeccccC
Q 016579 246 KADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM 280 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLVp 280 (387)
.-.++++|.+.+||+.+-=+|. .+..++++.|-+-
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t 135 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTT 135 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcc
Confidence 4669999999999999988888 5678888887554
No 390
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=44.00 E-value=15 Score=37.60 Aligned_cols=30 Identities=30% Similarity=0.589 Sum_probs=23.2
Q ss_pred EEEEccCCCCCChhhHHhh-----hcCceeeeccc
Q 016579 249 IILSGVSRTGKTPLSIYLA-----QKGYKVANVPI 278 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-----~~GyKVAN~PL 278 (387)
+||.|.+++|||=+.-.|+ ..|++|+=+-+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~ 36 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITY 36 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcc
Confidence 5899999999999954444 47888876543
No 391
>PTZ00035 Rad51 protein; Provisional
Probab=43.93 E-value=20 Score=36.33 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=21.4
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhh
Q 016579 243 NLQKADII-LSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 243 ~L~~ADIV-LvGVSRTsKTPlSmYLA 267 (387)
|+..-.|+ |.|.++||||-+|+-|+
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~ 139 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLC 139 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHH
Confidence 66666665 89999999999999987
No 392
>PLN02459 probable adenylate kinase
Probab=43.92 E-value=14 Score=36.49 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.2
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCce
Q 016579 248 DIILSGVSRTGKTPLSIYLA-QKGYK 272 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyK 272 (387)
-|||+|..++|||=+|-.|| .+|+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~ 56 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVP 56 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 49999999999999999999 56765
No 393
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=43.92 E-value=15 Score=32.19 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=21.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~ 276 (387)
|+|||-+++|||-+-.-+.+..+.+.+|
T Consensus 7 v~~vG~~~vGKTsli~~~~~~~f~~~~~ 34 (169)
T cd01892 7 CFVLGAKGSGKSALLRAFLGRSFSLNAY 34 (169)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCcccC
Confidence 8999999999999988777655543444
No 394
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=43.85 E-value=17 Score=32.99 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=25.8
Q ss_pred EEEEccCCCCCChh------hHHhhhcCcee----eeccccC
Q 016579 249 IILSGVSRTGKTPL------SIYLAQKGYKV----ANVPIVM 280 (387)
Q Consensus 249 IVLvGVSRTsKTPl------SmYLA~~GyKV----AN~PLVp 280 (387)
++|.|+..+|||=+ ..+|||.|.-| +++|++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d 43 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFD 43 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccc
Confidence 68999999999976 88999999644 5666554
No 395
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=43.83 E-value=15 Score=38.15 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.4
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cce
Q 016579 249 IILSGVSRTGKTPLSIYLAQK-GYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~-GyK 272 (387)
|+|+|.++||||=|+--||++ |..
T Consensus 222 IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 222 VAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 999999999999999999954 654
No 396
>PRK12377 putative replication protein; Provisional
Probab=43.64 E-value=65 Score=31.41 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=29.1
Q ss_pred hhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeec
Q 016579 227 EAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 227 eAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
.|.+|+-....+ ..-++|.|.++||||=|+.=+| ++|++|.=+
T Consensus 89 ~a~~~a~~~~~~-------~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 89 QAKSIADELMTG-------CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred HHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 455565555432 1358999999999999887666 456666433
No 397
>PRK07952 DNA replication protein DnaC; Validated
Probab=43.61 E-value=16 Score=35.47 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=24.7
Q ss_pred cEEEEccCCCCCChhhHHhh----hcCceeeecc
Q 016579 248 DIILSGVSRTGKTPLSIYLA----QKGYKVANVP 277 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA----~~GyKVAN~P 277 (387)
-++|.|.++||||=|+.-+| ..|++|.-++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 58999999999999888777 3588887664
No 398
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=43.48 E-value=12 Score=34.17 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=19.9
Q ss_pred cCcEEEEccCCCCCChhhHHhhh
Q 016579 246 KADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
.+-++|+|+|++|||=|+-=||+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~ 25 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE 25 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH
Confidence 35589999999999999988884
No 399
>CHL00176 ftsH cell division protein; Validated
Probab=43.39 E-value=12 Score=41.14 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=19.6
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+|.|.++||||=+.-+||+.
T Consensus 219 VLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 219 VLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999953
No 400
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=43.38 E-value=11 Score=34.75 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=25.3
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeeccc
Q 016579 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVPI 278 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~----~GyKVAN~PL 278 (387)
|+..-. ++|.|.+++|||=+|++++. .|.+|..+=+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 454444 45689999999999999883 3666655533
No 401
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=43.36 E-value=2e+02 Score=25.91 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=52.6
Q ss_pred HHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEe-ecchHH--HHHHHHHhCCCCCCC---CCCCCCCC-CCCcHH
Q 016579 151 IKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPST-DVLGPI--TEAIASHLGVSPSGL---PRGAPGRN-FPLSEE 221 (387)
Q Consensus 151 i~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~v-Dllgp~--i~~le~~lG~~p~~~---~~~~pG~~-~~ld~~ 221 (387)
++.+.+-| .++++....++.-+.+.+.|+++|++++ ++++|. .+.+. .+....... |...++.. .....+
T Consensus 70 ~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~ 148 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPED 148 (202)
T ss_pred HHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHH
Confidence 34444444 4888887776655666678888888775 345443 23322 222121110 11112211 122234
Q ss_pred HHhhhhh-hhhhhhCCCCCCCCCCCc-----CcEEEEcc
Q 016579 222 YFRRIEA-IEFTIKQDDGALPQNLQK-----ADIILSGV 254 (387)
Q Consensus 222 YF~RIeA-IeFavkhDDG~~~~~L~~-----ADIVLvGV 254 (387)
+.+++.. .+.=+--|-|.+++++.+ ||.|++|=
T Consensus 149 ~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 149 DLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred HHHHHHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEEee
Confidence 4444433 123355667888777643 78888883
No 402
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=43.34 E-value=13 Score=39.04 Aligned_cols=25 Identities=44% Similarity=0.610 Sum_probs=22.1
Q ss_pred CCcCcEEEEccCCCCCChhhHHhhh
Q 016579 244 LQKADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 244 L~~ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
+...-|+|+|+++||||=++-.||.
T Consensus 114 ~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 114 LSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHH
Confidence 4456799999999999999999993
No 403
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.27 E-value=1.2e+02 Score=27.80 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=36.0
Q ss_pred eeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecc
Q 016579 133 VNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVL 189 (387)
Q Consensus 133 ~~~~~~p~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vDll 189 (387)
+....++.-.+.++..+.++.+...+ +||+++.......+.+++ +.+.|+|+|-+-
T Consensus 32 ~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~-~~~~~ipvv~~~ 89 (271)
T cd06321 32 VKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKR-AQAAGIVVVAVD 89 (271)
T ss_pred eEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHH-HHHCCCeEEEec
Confidence 55666655567777777777764444 688876533335666655 456789998873
No 404
>PLN03110 Rab GTPase; Provisional
Probab=43.23 E-value=50 Score=30.44 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.4
Q ss_pred cEEEEccCCCCCChhhHHhhhcCce
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYK 272 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyK 272 (387)
-|++||-+.+|||-|--.|.+..+.
T Consensus 14 Ki~ivG~~~vGKStLi~~l~~~~~~ 38 (216)
T PLN03110 14 KIVLIGDSGVGKSNILSRFTRNEFC 38 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5999999999999988777655443
No 405
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=43.20 E-value=48 Score=33.73 Aligned_cols=66 Identities=23% Similarity=0.270 Sum_probs=49.2
Q ss_pred EEEEccCCCCCChhh----HHhhhcCceeeeccccC--------CCCCCccccccCCCcEEEEecChhHHHHHHHHHHh
Q 016579 249 IILSGVSRTGKTPLS----IYLAQKGYKVANVPIVM--------GVELPKSLFQVDPEKVFGLTINPLVLQSIRKARAR 315 (387)
Q Consensus 249 IVLvGVSRTsKTPlS----mYLA~~GyKVAN~PLVp--------~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk 315 (387)
++..|=.+.|||=+| .|||..|.||.=+=.=| +.+++....++. .-+.|+-|||+.+.+=..+.++
T Consensus 5 v~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~-~nL~a~eiD~~~~l~ey~~~v~ 82 (322)
T COG0003 5 VFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG-PNLDALELDPEKALEEYWDEVK 82 (322)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcC-CCCceeeecHHHHHHHHHHHHH
Confidence 456799999998765 89999998866553333 456677776776 4578999999998886666654
No 406
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=43.17 E-value=11 Score=35.52 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016579 243 NLQKAD-IILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
|+..-. ++|.|.++||||-+++-++ +.|-||.=|
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyv 55 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYV 55 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 444444 5558999999999998544 356666433
No 407
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=43.15 E-value=1.2e+02 Score=25.43 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhhcC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~G 270 (387)
|+++|.+++|||=+--.|.+..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~ 23 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE 23 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 7999999999998877777543
No 408
>PRK04213 GTP-binding protein; Provisional
Probab=43.03 E-value=16 Score=32.63 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=26.1
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCceeeeccc
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQKGYKVANVPI 278 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PL 278 (387)
.-|+++|-+.+|||=|--.|.+.-+++.+.|-
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~ 41 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG 41 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCc
Confidence 46999999999999999888865566666663
No 409
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=43.00 E-value=18 Score=37.18 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=18.6
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016579 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
+++.|.++||||=++-|++
T Consensus 45 ~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred EEEECCCCCCHhHHHHHHH
Confidence 9999999999999999999
No 410
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=42.96 E-value=14 Score=33.59 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=58.2
Q ss_pred EEEEccCCCCCChhhHHhhhc--Cceeeecc-cc-CCCCCCccccccCC-----------CcEEEEecChhHHHHHHHH-
Q 016579 249 IILSGVSRTGKTPLSIYLAQK--GYKVANVP-IV-MGVELPKSLFQVDP-----------EKVFGLTINPLVLQSIRKA- 312 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~--GyKVAN~P-LV-p~v~lP~eLf~v~~-----------~KI~GLTIdPerL~~IR~e- 312 (387)
|+|||.+++|||=|+--|-.. -|+-...- .. .-++-|-|.++.+. -.+|+|..|...-..+=--
T Consensus 4 imliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~ 83 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPG 83 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCch
Confidence 789999999999999888743 23211111 11 12556666655431 3466666665421110000
Q ss_pred -----HHhhcCC-C-CCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHH
Q 016579 313 -----RARSLGF-R-DEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVV 367 (387)
Q Consensus 313 -----Rlk~lGl-~-~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~I 367 (387)
+...+|. + .+-.++-++.+++++.|..|-- ++ + ++|=-+|+..|||.-..|
T Consensus 84 fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~--~~-i-f~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 84 FASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGV--KE-I-FEVSAVTGEGIEELKDYL 141 (143)
T ss_pred hhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCC--CC-e-EEEECCCCcCHHHHHHHH
Confidence 0112221 0 0001123455555555555421 22 2 456677888999876654
No 411
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=42.91 E-value=14 Score=32.00 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=21.7
Q ss_pred EEccCCCCCChhhHHhh-hcCceeeec
Q 016579 251 LSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 251 LvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
|+|..++|||-+|-.|| .+|+..-++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 78999999999999999 567665554
No 412
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=42.87 E-value=17 Score=30.51 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=22.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecc
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~P 277 (387)
|+|+|-+++|||=|-..|........++.
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~~~~ 30 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQIIV 30 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcceec
Confidence 79999999999999888876544455543
No 413
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=42.83 E-value=16 Score=30.70 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+++|-+.+|||-+.-.|.+.
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999888754
No 414
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=42.48 E-value=71 Score=33.30 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=42.4
Q ss_pred ccccCCHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHHHHHHHHHcCCCEe
Q 016579 138 FSGIDDVEQLMVIIKQAAKDG-AMLVYTLADPSMAESAKKACELWGIPST 186 (387)
Q Consensus 138 ~p~V~t~e~l~~ii~~a~~~~-~iV~~Tlvd~elr~~l~~~~~~~gi~~v 186 (387)
-|-|-|-+++.++++.|.+++ ++-.+.+.|.++.+.+-+.+++.+-|+|
T Consensus 6 ~~~~~~~~~~~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvI 55 (357)
T TIGR01520 6 KPGVITGDDVHKLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPII 55 (357)
T ss_pred CCCccCHHHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEE
Confidence 477888999999999988777 8888999999998888889998888875
No 415
>PRK04328 hypothetical protein; Provisional
Probab=42.39 E-value=11 Score=35.91 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=20.4
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhhcC
Q 016579 243 NLQKAD-IILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~~G 270 (387)
|+..-. ++|.|.++||||-+|+.++..|
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~ 47 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNG 47 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 454333 5568999999999999776433
No 416
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=42.29 E-value=15 Score=36.26 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.9
Q ss_pred cEEEEccCCCCCChhhHHhh-hcCcee
Q 016579 248 DIILSGVSRTGKTPLSIYLA-QKGYKV 273 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~GyKV 273 (387)
-++|.|.++||||=+...+| ..|.++
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 37999999999999999999 456543
No 417
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=42.28 E-value=18 Score=30.52 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=20.6
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
|+++|-+.+|||-+.--|....+..
T Consensus 3 i~iiG~~~~GKtsli~~l~~~~~~~ 27 (168)
T cd01887 3 VTVMGHVDHGKTTLLDKIRKTNVAA 27 (168)
T ss_pred EEEEecCCCCHHHHHHHHHhccccc
Confidence 7899999999999999988544433
No 418
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=42.27 E-value=17 Score=30.05 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=21.6
Q ss_pred cEEEEccCCCCCChhhHHhhhcC-ceeeecc
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKG-YKVANVP 277 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~G-yKVAN~P 277 (387)
.|+|+|.+.+|||=+.-.|.... -++.|.|
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~ 33 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIA 33 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCC
Confidence 48999999999997777776433 2345544
No 419
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=42.06 E-value=19 Score=34.29 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=15.9
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016579 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
+++.|..+||||=|++..|
T Consensus 22 v~~~G~AGTGKT~LA~a~A 40 (205)
T PF02562_consen 22 VIVNGPAGTGKTFLALAAA 40 (205)
T ss_dssp EEEE--TTSSTTHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7889999999999999988
No 420
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=42.03 E-value=15 Score=36.00 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=25.3
Q ss_pred cEEEEccCCCCCChhhHHhh-hcC--ceeeeccccC
Q 016579 248 DIILSGVSRTGKTPLSIYLA-QKG--YKVANVPIVM 280 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA-~~G--yKVAN~PLVp 280 (387)
.++|-|++++|||=|+.-+| ..| ++..|=|.+.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 48999999999999999999 445 5556656554
No 421
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=42.00 E-value=17 Score=31.42 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=20.1
Q ss_pred CcEEEEccCCCCCChhhHHhhhcC
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQKG 270 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~G 270 (387)
..|++||.+.+|||-|...|.+..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~ 26 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR 26 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999998886433
No 422
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=41.89 E-value=37 Score=34.96 Aligned_cols=109 Identities=22% Similarity=0.241 Sum_probs=53.7
Q ss_pred CCCcCc-EEEEccCCCCCChhhHHhhh----cCceeeeccccCCCCCCcccc------ccCCCcEEE-EecChhHHHH-H
Q 016579 243 NLQKAD-IILSGVSRTGKTPLSIYLAQ----KGYKVANVPIVMGVELPKSLF------QVDPEKVFG-LTINPLVLQS-I 309 (387)
Q Consensus 243 ~L~~AD-IVLvGVSRTsKTPlSmYLA~----~GyKVAN~PLVp~v~lP~eLf------~v~~~KI~G-LTIdPerL~~-I 309 (387)
|+..-. ++|.|.+++|||=+++.+|. .|.||.-+-. -+-+.++- ..+..+++- ...+.+.|.+ |
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~---EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG---EESPEQIKLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC---CcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 344434 46679999999999998883 4556654432 12223221 112222221 1222233222 2
Q ss_pred HHHHHhhcCCCC-------CCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeC
Q 016579 310 RKARARSLGFRD-------EIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEV 355 (387)
Q Consensus 310 R~eRlk~lGl~~-------~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDV 355 (387)
++.+.+-+=+++ ..++...+..++++-+..-.++.+++ |+++|=+
T Consensus 155 ~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~-~itvilv 206 (372)
T cd01121 155 EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKER-NIPIFIV 206 (372)
T ss_pred HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHc-CCeEEEE
Confidence 221111000000 00122334567777777777888886 9998654
No 423
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=41.84 E-value=2e+02 Score=27.13 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.0
Q ss_pred EEEEccCCCCCChh------hHHhhhcCc
Q 016579 249 IILSGVSRTGKTPL------SIYLAQKGY 271 (387)
Q Consensus 249 IVLvGVSRTsKTPl------SmYLA~~Gy 271 (387)
++|.|++.+|||=+ ..||||.|.
T Consensus 33 ~~l~G~n~~GKstll~~i~~~~~la~~g~ 61 (222)
T cd03285 33 LIITGPNMGGKSTYIRQIGVIVLMAQIGC 61 (222)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHhCC
Confidence 69999999999983 578999994
No 424
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.82 E-value=52 Score=27.00 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=33.9
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHh
Q 016579 159 AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHL 200 (387)
Q Consensus 159 ~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~l 200 (387)
-||+...++-++...+++.|+++++|++=.=+.-+..|++.|
T Consensus 52 VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~l 93 (97)
T PF10087_consen 52 VIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERAL 93 (97)
T ss_pred EEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHH
Confidence 366677999999999999999999999977655666666554
No 425
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=41.81 E-value=15 Score=34.35 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=21.8
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyK 272 (387)
|+|.|.|++||+=|++=|..+|++
T Consensus 21 VLi~G~SG~GKS~lAl~Li~rGh~ 44 (171)
T PF07475_consen 21 VLITGPSGIGKSELALELIKRGHR 44 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHTT-E
T ss_pred EEEECCCCCCHHHHHHHHHHCCCe
Confidence 889999999999999999999984
No 426
>PF05729 NACHT: NACHT domain
Probab=41.74 E-value=17 Score=30.53 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=17.8
Q ss_pred EEEEccCCCCCChhhHHhh
Q 016579 249 IILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA 267 (387)
++|.|..++|||=++-+++
T Consensus 3 l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 6899999999999999988
No 427
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.58 E-value=1.6e+02 Score=29.78 Aligned_cols=144 Identities=20% Similarity=0.227 Sum_probs=84.8
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcCC-HH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLAD-PS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlvd-~e 169 (387)
...+.++.|.|.-+ ....++.-...+..+ +++++.+.||---+.+++.+.|+++.++. +|+++ =|-. -+
T Consensus 31 ~P~LaiI~vg~d~a--s~~Yv~~k~k~~~~~----Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~ 104 (297)
T PRK14167 31 TPGLATVLMSDDPA--SETYVSMKQRDCEEV----GIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVD 104 (297)
T ss_pred CceEEEEEeCCCHH--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCC
Confidence 44678888988764 344555555555432 46789999998889999999999886554 56665 4431 12
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.++..+-+++| |-|.|. +..|. .|.+. -.| ..| .||=.=|+|= |. +|...+
T Consensus 105 ~~~i~~~I~p~KDV---DGl~~~n~g~l~--~g~~~-~~P-cTp--------------~avi~lL~~~-~i---~l~Gk~ 159 (297)
T PRK14167 105 DREVLRRIDPAKDV---DGFHPENVGRLV--AGDAR-FKP-CTP--------------HGIQKLLAAA-GV---DTEGAD 159 (297)
T ss_pred HHHHHhccCcccCc---ccCChhhhHHHh--CCCCC-CCC-CCH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 22344444444443 556654 22221 23221 111 122 1111111111 22 366678
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
+++||=|.+==-||+++|.++
T Consensus 160 vvViGrS~iVGkPla~lL~~~ 180 (297)
T PRK14167 160 VVVVGRSDIVGKPMANLLIQK 180 (297)
T ss_pred EEEECCCcccHHHHHHHHhcC
Confidence 999999999888999999987
No 428
>PRK08223 hypothetical protein; Validated
Probab=41.50 E-value=57 Score=32.81 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=49.1
Q ss_pred ccEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEecc-ccCCHHHHHHHHHHHHhCCCEEEEEcCCH--HHHH
Q 016579 97 GKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFS-GIDDVEQLMVIIKQAAKDGAMLVYTLADP--SMAE 172 (387)
Q Consensus 97 ~~~IfiVSDsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p-~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~--elr~ 172 (387)
.+++++-.+..|.. |+.+++.+....|. ++++.++ .+ +.+.+.++++.. -+|+-.+-+. +.|.
T Consensus 68 nRQ~l~~~~diG~~Kve~a~~~l~~iNP~--------v~V~~~~~~l-~~~n~~~ll~~~----DlVvD~~D~~~~~~r~ 134 (287)
T PRK08223 68 NRQAGAMMSTLGRPKAEVLAEMVRDINPE--------LEIRAFPEGI-GKENADAFLDGV----DVYVDGLDFFEFDARR 134 (287)
T ss_pred ccccCcChhHCCCcHHHHHHHHHHHHCCC--------CEEEEEeccc-CccCHHHHHhCC----CEEEECCCCCcHHHHH
Confidence 46666555557755 44444444444464 3444444 34 355566666432 3777666554 8899
Q ss_pred HHHHHHHHcCCCEee
Q 016579 173 SAKKACELWGIPSTD 187 (387)
Q Consensus 173 ~l~~~~~~~gi~~vD 187 (387)
.+.+.|.++|+|+|.
T Consensus 135 ~ln~~c~~~~iP~V~ 149 (287)
T PRK08223 135 LVFAACQQRGIPALT 149 (287)
T ss_pred HHHHHHHHcCCCEEE
Confidence 999999999999987
No 429
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=41.23 E-value=18 Score=30.57 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=21.1
Q ss_pred cEEEEccCCCCCChhhHHhhhcCcee
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
-|+++|.+++|||=+.-.|.+..+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~ 27 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKE 27 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 48999999999999988887554433
No 430
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=41.12 E-value=17 Score=30.93 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=18.2
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|+++|-+++|||-|-..|.+
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 79999999999999888874
No 431
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=41.06 E-value=65 Score=26.00 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=34.0
Q ss_pred EEEEEcCCHHHHHH-HHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016579 160 MLVYTLADPSMAES-AKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 160 iV~~Tlvd~elr~~-l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+|+..=+++..... +...|++++||++-+. -...|...+|...
T Consensus 35 vilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~--s~~eLG~~~g~~~ 78 (95)
T PF01248_consen 35 VILAEDCSPDSIKKHLPALCEEKNIPYVFVP--SKEELGRACGKKR 78 (95)
T ss_dssp EEEETTSSSGHHHHHHHHHHHHTTEEEEEES--HHHHHHHHTTSSS
T ss_pred EEEcCCCChhhhcccchhheeccceeEEEEC--CHHHHHHHHCCCC
Confidence 55555566666666 9999999999998776 5689999999874
No 432
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.01 E-value=20 Score=41.29 Aligned_cols=103 Identities=21% Similarity=0.399 Sum_probs=59.6
Q ss_pred EEEEccCCCCCChhhH---Hhh-hcCceeeecc-----ccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCC
Q 016579 249 IILSGVSRTGKTPLSI---YLA-QKGYKVANVP-----IVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGF 319 (387)
Q Consensus 249 IVLvGVSRTsKTPlSm---YLA-~~GyKVAN~P-----LVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl 319 (387)
+|+-|||+|||+=|.+ |-- |+-| +-.++ +++..+-| +-++|-||.-.. .|.+.+.
T Consensus 25 ~v~TGvSGSGKSSLafDtl~aEgqRry-~es~s~y~rq~l~~~~~P------~vd~i~gl~pai----ai~Q~~~----- 88 (924)
T TIGR00630 25 VVITGLSGSGKSSLAFDTIYAEGQRRY-VESLSAYARQFLGVMDKP------DVDSIEGLSPAI----SIDQKTT----- 88 (924)
T ss_pred EEEecCCCCCchhHHHHHHHHHHHHHH-HhhccHHHHHhhccCCCC------CcCeEcCCCceE----EEeccCC-----
Confidence 6899999999999975 322 3322 11222 34433322 223455553211 1222221
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEE-----eCCCccHHHHHHHHHHHH
Q 016579 320 RDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-----EVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 320 ~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvI-----DVT~kSIEEtAa~Il~~~ 371 (387)
..+..+....+-+=-+|-+-||.+. |.|+- .+...+.+++++.|+++.
T Consensus 89 ---~~n~RSTVgT~Tei~~~LrlLfar~-g~~~~p~~~~~~~~~~~~~~~~~~~~~~ 141 (924)
T TIGR00630 89 ---SHNPRSTVGTITEIYDYLRLLFARV-GTPYCPNCGRPISSQSVSQIVDQILALP 141 (924)
T ss_pred ---CCCCCcccchHHHHHHHHHHHHHhc-CCCCCCCCCCCcccCCHHHHHHHHHhCC
Confidence 1234455555555578999999995 85533 356778899999998754
No 433
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=40.93 E-value=17 Score=31.67 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+|+|.+++|||-+-..|.+.
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~ 22 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQD 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 799999999999998888753
No 434
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=40.88 E-value=21 Score=36.27 Aligned_cols=28 Identities=36% Similarity=0.623 Sum_probs=23.7
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
|||+|+--||||=||+=|| +.|--|-|.
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~~~eIIs~ 34 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRLGGEIISL 34 (308)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEec
Confidence 8999999999999999999 566655553
No 435
>CHL00181 cbbX CbbX; Provisional
Probab=40.73 E-value=15 Score=36.12 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
++|.|.++||||-+.-.||+
T Consensus 62 ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999985
No 436
>PRK06761 hypothetical protein; Provisional
Probab=40.71 E-value=30 Score=34.57 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.1
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016579 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
-|++.|+++||||-++-.|++
T Consensus 5 lIvI~G~~GsGKTTla~~L~~ 25 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLND 25 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999993
No 437
>PHA00729 NTP-binding motif containing protein
Probab=40.70 E-value=15 Score=35.69 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=55.7
Q ss_pred cEEEEccCCCCCChhhHHhhhc-CceeeeccccCCCCCCccccccCCCcEEEEecChhHHHH-HHHHHHhh-----cCCC
Q 016579 248 DIILSGVSRTGKTPLSIYLAQK-GYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQS-IRKARARS-----LGFR 320 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~-GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~-IR~eRlk~-----lGl~ 320 (387)
-|+|.|.++||||=+++=||+. |.++. +|+ .+..-+ ++. .-++.++.+.|.+ |+..+-.. |-++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~--~l~----~~~~~~--d~~-~~~~fid~~~Ll~~L~~a~~~~~~~dlLIID 89 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLN--NLS----TKDDAW--QYV-QNSYFFELPDALEKIQDAIDNDYRIPLIIFD 89 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcc--ccc----chhhHH--hcC-CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 5999999999999999999964 41111 221 112222 222 2467777776665 44332110 0000
Q ss_pred C--CCCCCC---CCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHH
Q 016579 321 D--EIRSNY---SEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLR 369 (387)
Q Consensus 321 ~--~~~S~Y---A~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~ 369 (387)
+ --.+.| .+.-.+..+|-.| ++- .|-++=++..+.|++...+-+
T Consensus 90 d~G~~~~~~~wh~~~~~~yf~L~~a---LrS--R~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 90 DAGIWLSKYVWYEDYMKTFYKIYAL---IRT--RVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CCchhhcccchhhhccchHHHHHHH---HHh--hCcEEEEecCCHHHHHHHHHh
Confidence 0 001222 1111222233222 221 367788888888888776554
No 438
>PRK10536 hypothetical protein; Provisional
Probab=40.66 E-value=16 Score=36.31 Aligned_cols=21 Identities=33% Similarity=0.240 Sum_probs=18.2
Q ss_pred cEEEEccCCCCCChhhHHhhh
Q 016579 248 DIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~ 268 (387)
=++++|..+||||=|+..+|.
T Consensus 76 lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 367779999999999999884
No 439
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=40.50 E-value=17 Score=35.57 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=14.4
Q ss_pred EEEEccCCCCCChhhH
Q 016579 249 IILSGVSRTGKTPLSI 264 (387)
Q Consensus 249 IVLvGVSRTsKTPlSm 264 (387)
+++.|||++|||=|..
T Consensus 24 ~~vtGvSGsGKStL~~ 39 (261)
T cd03271 24 TCVTGVSGSGKSSLIN 39 (261)
T ss_pred EEEECCCCCchHHHHH
Confidence 5899999999999875
No 440
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=40.45 E-value=14 Score=36.42 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=14.7
Q ss_pred EEEEccCCCCCChhhHHh
Q 016579 249 IILSGVSRTGKTPLSIYL 266 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYL 266 (387)
++++|+|+||||-+---|
T Consensus 31 v~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 31 VVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999875443
No 441
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=40.41 E-value=18 Score=36.81 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=23.2
Q ss_pred EEEEccCCCCCChhhHHhhhc------Cceeeecc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK------GYKVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~------GyKVAN~P 277 (387)
++|.|.++||||=|...+|+. |.+|.-++
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 789999999999999988842 56665544
No 442
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=40.27 E-value=2.5e+02 Score=28.06 Aligned_cols=86 Identities=19% Similarity=0.260 Sum_probs=56.9
Q ss_pred ccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016579 97 GKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (387)
Q Consensus 97 ~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (387)
++.++||+|.+-. +.+.+.+..+|.+. .+....|..+-+.+.++++++.+.+.++=++-.+=--..-+..+-
T Consensus 23 ~~~~liv~d~~~~--~~~~~~l~~~L~~~------~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ 94 (347)
T cd08172 23 GKRPLIVTGPRSW--AAAKPYLPESLAAG------EAFVLRYDGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKA 94 (347)
T ss_pred CCeEEEEECHHHH--HHHHHHHHHHHhcC------eEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHH
Confidence 5789999997653 45666666666432 345667888899999999998887666433444545555555555
Q ss_pred HHHHcCCCEeecch
Q 016579 177 ACELWGIPSTDVLG 190 (387)
Q Consensus 177 ~~~~~gi~~vDllg 190 (387)
.+...++|++-+-.
T Consensus 95 ia~~~~~p~i~VPT 108 (347)
T cd08172 95 VADRLGVPVITVPT 108 (347)
T ss_pred HHHHhCCCEEEecC
Confidence 55556778776643
No 443
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.25 E-value=50 Score=32.17 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=60.3
Q ss_pred HHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHH--HHHHHhCCCC------CCCCCCCCCCCCC
Q 016579 148 MVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITE--AIASHLGVSP------SGLPRGAPGRNFP 217 (387)
Q Consensus 148 ~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~--~le~~lG~~p------~~~~~~~pG~~~~ 217 (387)
++.++++++.| +++++=+...+. +.+.+.|+++|+..+=++.|-.. .+...+.... +. .+..|....
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~-~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~--~G~TG~~~~ 181 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEES-GDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSR--AGVTGARNR 181 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHH-HHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEEC--CCCCCCccc
Confidence 44566665555 577776665554 45567889999988888888553 5555555544 10 123343222
Q ss_pred Cc---HHHHhhhhhh-hhhhhCCCCCC-CCCCCc-----CcEEEEc
Q 016579 218 LS---EEYFRRIEAI-EFTIKQDDGAL-PQNLQK-----ADIILSG 253 (387)
Q Consensus 218 ld---~~YF~RIeAI-eFavkhDDG~~-~~~L~~-----ADIVLvG 253 (387)
+. .++.+++... +=-|..|=|.+ +++..+ ||.|+||
T Consensus 182 ~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 182 AASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred CChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 33 5677777642 11244455665 554443 7999998
No 444
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=40.20 E-value=18 Score=30.55 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.4
Q ss_pred cEEEEccCCCCCChhhHHhhhc
Q 016579 248 DIILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~ 269 (387)
.|++||-+.+|||=|...|.+.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888754
No 445
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=40.14 E-value=13 Score=36.08 Aligned_cols=64 Identities=28% Similarity=0.391 Sum_probs=37.0
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEe----cCh
Q 016579 228 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLT----INP 303 (387)
Q Consensus 228 AIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLT----IdP 303 (387)
+++=.+ ..|.....+-| |.|.|+||||=+||-||-. +.+|.+. .-...+++=++ .++
T Consensus 26 ~lD~~L--~GGi~~g~itE----i~G~~gsGKTql~l~l~~~------------~~l~~~~-~g~~~~vvyidTe~~f~~ 86 (256)
T PF08423_consen 26 SLDELL--GGGIPTGSITE----IVGESGSGKTQLCLQLAVN------------VQLPEEI-GGLGGKVVYIDTEGTFSP 86 (256)
T ss_dssp HHHHHT--TSSEETTSEEE----EEESTTSSHHHHHHHHHHH------------TTSGGCT-TSSSSEEEEEESSSSS-H
T ss_pred HHHHhh--CCCCCCCcEEE----EEEecccccchHHHHHHHH------------hhccccc-ccCCCceEEEeCCCCCCH
Confidence 344444 33444444432 8999999999999999822 1333332 11223444333 578
Q ss_pred hHHHHHH
Q 016579 304 LVLQSIR 310 (387)
Q Consensus 304 erL~~IR 310 (387)
+||.+|=
T Consensus 87 ~Rl~~i~ 93 (256)
T PF08423_consen 87 ERLQQIA 93 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8998884
No 446
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=39.97 E-value=1.2e+02 Score=30.24 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=67.0
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCC-EEEEEcCCHHHHHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGA-MLVYTLADPSMAES 173 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~-iV~~Tlvd~elr~~ 173 (387)
..+..||++=..-|.+. ..+..+-++||+. .+--+...|.+..|+ +.|++.+.+.++ ||+--+-.|.=-..
T Consensus 106 ~~~~~vfllGgkp~V~~-~a~~~l~~~~p~l------~ivg~h~GYf~~~e~-~~i~~~I~~s~pdil~VgmG~P~QE~w 177 (253)
T COG1922 106 EEGKRVFLLGGKPGVAE-QAAAKLRAKYPGL------KIVGSHDGYFDPEEE-EAIVERIAASGPDILLVGMGVPRQEIW 177 (253)
T ss_pred ccCceEEEecCCHHHHH-HHHHHHHHHCCCc------eEEEecCCCCChhhH-HHHHHHHHhcCCCEEEEeCCCchhHHH
Confidence 34689999977666554 4455588999974 455556689988888 899999987774 87777777766556
Q ss_pred HHHHHHHcCCCEeecchHHHHHHHHHhCCCC
Q 016579 174 AKKACELWGIPSTDVLGPITEAIASHLGVSP 204 (387)
Q Consensus 174 l~~~~~~~gi~~vDllgp~i~~le~~lG~~p 204 (387)
+.+.-...+.+++==.|.+++-++..-..+|
T Consensus 178 i~~~~~~~~~~v~igVGg~fDv~sG~vkRAP 208 (253)
T COG1922 178 IARNRQQLPVAVAIGVGGSFDVFSGRVKRAP 208 (253)
T ss_pred HHHhHHhcCCceEEeccceEEEecCCcccch
Confidence 6555555554443334445444444333333
No 447
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=39.60 E-value=19 Score=32.47 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=20.9
Q ss_pred CcEEEEccCCCCCChhhHHhhhcCc
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
--|++||.+++|||-+...|.+.-+
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~ 31 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTF 31 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4599999999999999988875433
No 448
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=39.59 E-value=24 Score=32.66 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=34.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhC-CCCcEEeCCCccHHHHHHHHHHH
Q 016579 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQN-PVWPVIEVTGKAIEETAAVVLRL 370 (387)
Q Consensus 292 ~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~EL~~A~~lf~k~-~g~pvIDVT~kSIEEtAa~Il~~ 370 (387)
.+--.||+.-+++.|.+ +||.+ +.....+.+-+.+ .+++-. .. -.||+|..+.||.|..|++.
T Consensus 109 ~~vl~VgV~Cpleil~~--RE~~R--------gDR~~G~a~~q~~-----~Vh~~~~YD-leVDTs~~sp~ecA~~I~~~ 172 (174)
T PF07931_consen 109 LPVLFVGVRCPLEILER--RERAR--------GDRPIGLAAWQAE-----HVHEGGRYD-LEVDTSATSPEECAREILAR 172 (174)
T ss_dssp S-EEEEEEE--HHHHHH--HHHHH--------TSSSTTHHHHHTT-----GGGTT---S-EEEETTSS-HHHHHHHHHTT
T ss_pred CceEEEEEECCHHHHHH--HHHhc--------CCcchHHHHHHHh-----hcccCCCCC-EEEECCCCCHHHHHHHHHHH
Confidence 33357999999997765 33332 1123333333322 222211 12 35899999999999999976
Q ss_pred H
Q 016579 371 Y 371 (387)
Q Consensus 371 ~ 371 (387)
+
T Consensus 173 ~ 173 (174)
T PF07931_consen 173 L 173 (174)
T ss_dssp -
T ss_pred h
Confidence 5
No 449
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.51 E-value=2e+02 Score=28.95 Aligned_cols=150 Identities=15% Similarity=0.220 Sum_probs=83.8
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcC-CHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLA-DPS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlv-d~e 169 (387)
..++.+..|.|.-+.. ..++.-...+..+ ++.++.+.||---+++++.+.|+++.++. +|+++ -|- .-+
T Consensus 30 ~P~LaiI~vg~d~as~--~Yv~~k~k~a~~~----Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~ 103 (282)
T PRK14182 30 QTGLTVVRVGDDPASA--IYVRGKRKDCEEV----GITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVD 103 (282)
T ss_pred CCeEEEEEeCCCHHHH--HHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 4567888888766543 3333333333322 35788889998889999999998885554 56665 442 112
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCc
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKAD 248 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~AD 248 (387)
-.+.+..-.-+++ ||=|.|. +..|- .|......| ..| .||=-=++|- |. ++.-.+
T Consensus 104 ~~~i~~~I~p~KD---VDGl~~~n~g~l~--~g~~~~~~P-cTp--------------~avi~ll~~~-~i---~l~Gk~ 159 (282)
T PRK14182 104 ERAVLDAISPAKD---ADGFHPFNVGALS--IGIAGVPRP-CTP--------------AGVMRMLDEA-RV---DPKGKR 159 (282)
T ss_pred HHHHHhccCcccC---cCCCCHhHHHHHh--CCCCCCCCC-CCH--------------HHHHHHHHHh-CC---CCCCCE
Confidence 2223333333333 3556553 22222 332110011 122 1111111111 12 356678
Q ss_pred EEEEccCCCCCChhhHHhhhcCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
+++||=|.+==-||+++|.++|..|.
T Consensus 160 vvViGrS~iVGkPla~lL~~~~AtVt 185 (282)
T PRK14182 160 ALVVGRSNIVGKPMAMMLLERHATVT 185 (282)
T ss_pred EEEECCCCcchHHHHHHHHHCCCEEE
Confidence 99999999999999999999886554
No 450
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=39.51 E-value=94 Score=28.28 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=46.6
Q ss_pred CccEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016579 96 EGKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174 (387)
Q Consensus 96 ~~~~IfiVSDsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l 174 (387)
-.+++|..+| .|.. |+.+.+.+..-.|++ +++.+.- .+ +.+.+.++++. --+||.+.-+.+.|..+
T Consensus 39 l~Rq~~~~~~-vg~~Ka~~~~~~l~~lnp~v------~i~~~~~-~~-~~~~~~~~l~~----~DlVi~~~d~~~~r~~i 105 (174)
T cd01487 39 LNRQQYFLSQ-IGEPKVEALKENLREINPFV------KIEAINI-KI-DENNLEGLFGD----CDIVVEAFDNAETKAML 105 (174)
T ss_pred hhcccccHhh-CCChHHHHHHHHHHHHCCCC------EEEEEEe-ec-ChhhHHHHhcC----CCEEEECCCCHHHHHHH
Confidence 3456666554 5643 444444333334543 2322221 22 33455555532 24999999999999988
Q ss_pred HHHHHHc-CCCEeec
Q 016579 175 KKACELW-GIPSTDV 188 (387)
Q Consensus 175 ~~~~~~~-gi~~vDl 188 (387)
.+.|.++ ++|+|--
T Consensus 106 ~~~~~~~~~ip~i~~ 120 (174)
T cd01487 106 AESLLGNKNKPVVCA 120 (174)
T ss_pred HHHHHHHCCCCEEEE
Confidence 7777776 9999854
No 451
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=39.40 E-value=22 Score=33.00 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=26.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
|.|.|-+++|||=++=+|+.+|+.+-+---+
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~i~~D~i 32 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEELGAFGISADRL 32 (196)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEEEecchH
Confidence 6789999999999999999999887665433
No 452
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=39.39 E-value=20 Score=34.81 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=26.3
Q ss_pred CcCcEEEEccCCCCCChhhHHhhh----cCceeeecccc
Q 016579 245 QKADIILSGVSRTGKTPLSIYLAQ----KGYKVANVPIV 279 (387)
Q Consensus 245 ~~ADIVLvGVSRTsKTPlSmYLA~----~GyKVAN~PLV 279 (387)
...-++|.|.++||||=|+.=+|| +|++|.=+++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 445699999999999999887774 46666555443
No 453
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.33 E-value=95 Score=32.81 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=18.1
Q ss_pred EEEEccCCCCCChhhHHhhh
Q 016579 249 IILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~ 268 (387)
|.|||++++|||=|.--||.
T Consensus 194 i~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 194 YALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77999999999999988874
No 454
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=39.32 E-value=17 Score=37.66 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+|.|.++||||-+.-.+|+.
T Consensus 182 vLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 182 VLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999953
No 455
>PTZ00258 GTP-binding protein; Provisional
Probab=39.26 E-value=21 Score=37.26 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=29.9
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
-|.|||.+.+|||-|==-|.+....++|||.+-
T Consensus 23 kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftT 55 (390)
T PTZ00258 23 KMGIVGLPNVGKSTTFNALCKQQVPAENFPFCT 55 (390)
T ss_pred EEEEECCCCCChHHHHHHHhcCcccccCCCCCc
Confidence 489999999999999888888789999999975
No 456
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.25 E-value=1.3e+02 Score=27.28 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=31.9
Q ss_pred eEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEee
Q 016579 134 NTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTD 187 (387)
Q Consensus 134 ~~~~~p~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vD 187 (387)
+...+..-.+.++..+.++.+...+ +||++....+...+.++. +.+.|+|+|=
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~-~~~~~iPvV~ 86 (275)
T cd06317 32 EVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRK-AKQAGIPVVI 86 (275)
T ss_pred EEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHH-HHHCCCcEEE
Confidence 3344444456666666676654433 688877644434455544 4678999884
No 457
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=39.17 E-value=23 Score=32.65 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=24.5
Q ss_pred EEEccCCCCCChhhHHhh----hcCceeeeccccC
Q 016579 250 ILSGVSRTGKTPLSIYLA----QKGYKVANVPIVM 280 (387)
Q Consensus 250 VLvGVSRTsKTPlSmYLA----~~GyKVAN~PLVp 280 (387)
=++|-|.||||=|.==|. .+|||||=|=-..
T Consensus 6 ~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 6 GIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred EEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 378999999998877664 7899999765444
No 458
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=39.16 E-value=73 Score=32.37 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCC-------CcCcEEEE--ccCCCCCC
Q 016579 190 GPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNL-------QKADIILS--GVSRTGKT 260 (387)
Q Consensus 190 gp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L-------~~ADIVLv--GVSRTsKT 260 (387)
...|...++.-...+ |.+.+|..+..+++=+++|..+=... ++..+.+ ..+-||.| +--++|||
T Consensus 47 ~~tlr~~e~~~~~~~---~~r~~~g~r~yt~~di~~l~~~~~~~----~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKT 119 (387)
T TIGR03453 47 DSYLRQLSLEGKGPE---PETLSNGRRSYTLEQINELRRHLAQR----GREARRYLPHRRGGEHLQVIAVTNFKGGSGKT 119 (387)
T ss_pred HHHHHHHHHcCCCCC---CCcCCCCceeeCHHHHHHHHHHHHhc----cccccccCCCcCCCCCceEEEEEccCCCcCHH
Confidence 445555554443222 12356667777777666666543321 2222221 23335544 34489999
Q ss_pred hhhHHhh----hcCceee
Q 016579 261 PLSIYLA----QKGYKVA 274 (387)
Q Consensus 261 PlSmYLA----~~GyKVA 274 (387)
-+++.|| .+|+||.
T Consensus 120 T~a~nLA~~La~~G~rVL 137 (387)
T TIGR03453 120 TTAAHLAQYLALRGYRVL 137 (387)
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 9998777 6799996
No 459
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.02 E-value=22 Score=37.49 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=17.9
Q ss_pred CcEEEEccCCCCCChhhHHhh
Q 016579 247 ADIILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA 267 (387)
-=|+|+|++++|||=|..=||
T Consensus 207 ~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347899999999999887777
No 460
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=38.98 E-value=1.1e+02 Score=26.67 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.7
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+++|.+.+|||=+--+|.+.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999887777643
No 461
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=38.96 E-value=26 Score=40.59 Aligned_cols=103 Identities=20% Similarity=0.352 Sum_probs=59.7
Q ss_pred EEEEccCCCCCChhhH---Hhh-hcCceeeecc-----ccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCC
Q 016579 249 IILSGVSRTGKTPLSI---YLA-QKGYKVANVP-----IVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGF 319 (387)
Q Consensus 249 IVLvGVSRTsKTPlSm---YLA-~~GyKVAN~P-----LVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl 319 (387)
+|+-|||+|||+=|.+ |-- |+-|= -.++ +++..+- ++-++|-||.-.. .|.+.+. +
T Consensus 29 ~v~TGvSGSGKSSLafDtl~aEgqRry~-Es~s~y~rq~l~~~~~------P~vd~i~gl~p~I----ai~Q~~~---~- 93 (943)
T PRK00349 29 VVFTGLSGSGKSSLAFDTIYAEGQRRYV-ESLSAYARQFLGQMDK------PDVDSIEGLSPAI----SIDQKTT---S- 93 (943)
T ss_pred EEEecCCCCCchhHHHHHHHHHHHHHHH-hhccHHHHHhhccCCC------CCcCeEcCCCceE----EEEecCC---C-
Confidence 6899999999999975 322 33221 1122 3333332 2334455553221 1223221 1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEE-----eCCCccHHHHHHHHHHHH
Q 016579 320 RDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-----EVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 320 ~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvI-----DVT~kSIEEtAa~Il~~~ 371 (387)
.+..+....+-+=-+|-+-||.+. |.|+- .+...+.+++++.|++..
T Consensus 94 ----~n~RSTVgT~Tei~~~LrlLfar~-g~~~~p~~~~~~~~~~~~~~~~~~~~~~ 145 (943)
T PRK00349 94 ----HNPRSTVGTVTEIYDYLRLLYARV-GKPHCPNCGRPIEAQTVSQMVDRVLELP 145 (943)
T ss_pred ----CCCCccchhHHHHHHHHHHHHHhc-CCCCCCCCCCCcccCCHHHHHHHHHhCC
Confidence 334555556665578999999995 85543 345678899999998754
No 462
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.90 E-value=4e+02 Score=27.04 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=86.3
Q ss_pred cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC---CEEEE-EcC-CHH
Q 016579 95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG---AMLVY-TLA-DPS 169 (387)
Q Consensus 95 ~~~~~IfiVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~---~iV~~-Tlv-d~e 169 (387)
...+.++.|.|.-+ ....++.-...+..+ ++.++.+.||--.+++++.+.|+++.++. +|+++ -|- .-+
T Consensus 32 ~P~LaiI~vg~d~a--s~~Yv~~k~k~a~~~----Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~ 105 (294)
T PRK14187 32 FPCLIVILVGDDPA--SQLYVRNKQRKAEML----GLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHID 105 (294)
T ss_pred CCeEEEEEeCCChh--HHHHHHHHHHHHHHc----CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCC
Confidence 44577888876654 344555555555432 46788999998889999999999886554 56665 332 112
Q ss_pred HHHHHHHHHHHcCCCEeecchHH-HHHHHHHhCCC-CCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcC
Q 016579 170 MAESAKKACELWGIPSTDVLGPI-TEAIASHLGVS-PSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKA 247 (387)
Q Consensus 170 lr~~l~~~~~~~gi~~vDllgp~-i~~le~~lG~~-p~~~~~~~pG~~~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~A 247 (387)
-.+.++...-+++ ||-|.|. +..| ++|.. +.-.| ..|- . =|+-++| | |. +|.--
T Consensus 106 ~~~i~~~I~p~KD---VDGl~~~n~g~l--~~g~~~~~~~P-cTp~-------a---vi~lL~~---~--~i---~l~Gk 161 (294)
T PRK14187 106 KNLIINTIDPEKD---VDGFHNENVGRL--FTGQKKNCLIP-CTPK-------G---CLYLIKT---I--TR---NLSGS 161 (294)
T ss_pred HHHHHhccCcccC---cccCChhhHHHH--hCCCCCCCccC-cCHH-------H---HHHHHHH---h--CC---CCCCC
Confidence 2223333333333 3656654 2222 23332 11111 1221 0 0122222 1 22 45567
Q ss_pred cEEEEccCCCCCChhhHHhhhcCceee
Q 016579 248 DIILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
++++||=|.+==-|++++|.++|..|.
T Consensus 162 ~vvViGrS~iVGkPla~lL~~~~aTVt 188 (294)
T PRK14187 162 DAVVIGRSNIVGKPMACLLLGENCTVT 188 (294)
T ss_pred EEEEECCCccchHHHHHHHhhCCCEEE
Confidence 899999999988899999999986554
No 463
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=38.83 E-value=91 Score=29.57 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcC-CCEeecc
Q 016579 113 HAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWG-IPSTDVL 189 (387)
Q Consensus 113 ~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~g-i~~vDll 189 (387)
.+++.+..+|++..++ ++..++--| ++ +.+. +.+.| .+.||.....++-+...+..++.| ...||++
T Consensus 45 ~~i~~lk~~~~~~~v~--~DLK~~Di~--~~---v~~~---~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~ll 114 (216)
T PRK13306 45 KAVRVLRALYPDKIIV--ADTKIADAG--KI---LAKM---AFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELY 114 (216)
T ss_pred HHHHHHHHHCCCCEEE--EEEeecCCc--HH---HHHH---HHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEC
Confidence 4466666677764321 233333333 11 2212 33334 488888888886656656655555 6788888
Q ss_pred hHH
Q 016579 190 GPI 192 (387)
Q Consensus 190 gp~ 192 (387)
...
T Consensus 115 ts~ 117 (216)
T PRK13306 115 GNW 117 (216)
T ss_pred CCC
Confidence 753
No 464
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=38.72 E-value=21 Score=31.48 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.5
Q ss_pred CcEEEEccCCCCCChhhHHhhh
Q 016579 247 ADIILSGVSRTGKTPLSIYLAQ 268 (387)
Q Consensus 247 ADIVLvGVSRTsKTPlSmYLA~ 268 (387)
--|+|+|.+++|||-|-.+|..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~ 35 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKL 35 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4599999999999999998863
No 465
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=38.65 E-value=1.6e+02 Score=32.20 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.6
Q ss_pred cEEEEccCCCCCChhhHHhhh-cCc
Q 016579 248 DIILSGVSRTGKTPLSIYLAQ-KGY 271 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA~-~Gy 271 (387)
=|+|+|.|+||||=++-.||. .|.
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred EEEEECCCCChHHHHHHHHHHHhhh
Confidence 488999999999999999994 444
No 466
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=38.59 E-value=25 Score=31.25 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=22.5
Q ss_pred EEEEccCCCCCChhhHHhhh--cCceeee
Q 016579 249 IILSGVSRTGKTPLSIYLAQ--KGYKVAN 275 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~--~GyKVAN 275 (387)
++|+|-+++|||=+.-.|.+ +|++++-
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~~~~~~~~ 31 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQHGRKIAV 31 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcccCCcEEE
Confidence 68999999999999998873 4777754
No 467
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=38.43 E-value=4.6e+02 Score=27.00 Aligned_cols=172 Identities=15% Similarity=0.088 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhC-C--CEEEEEcCC-----HHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCC
Q 016579 144 VEQLMVIIKQAAKD-G--AMLVYTLAD-----PSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRN 215 (387)
Q Consensus 144 ~e~l~~ii~~a~~~-~--~iV~~Tlvd-----~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~ 215 (387)
.++|.+.|.++.+. + .|+++|--- .++...+++.-++.++|++-+ ..||..
T Consensus 70 ~~kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi~~v~~~~~~~~~~~vi~v---------------------~t~gf~ 128 (430)
T cd01981 70 QEKVVENITRKDKEEKPDLIVLTPTCTSSILQEDLQNFVRAAGLSSKSPVLPL---------------------DVNHYR 128 (430)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCHHHHHHHhhhccCCCeEEe---------------------cCCCcc
Confidence 57888888777442 2 355555422 333333443333345555543 245544
Q ss_pred CCCcHHHHhhhhhhhhhhhCCC---CCCCCCCCcCcEEEEccCCCCC------ChhhHHhhhcCceeeeccccCCCCCCc
Q 016579 216 FPLSEEYFRRIEAIEFTIKQDD---GALPQNLQKADIILSGVSRTGK------TPLSIYLAQKGYKVANVPIVMGVELPK 286 (387)
Q Consensus 216 ~~ld~~YF~RIeAIeFavkhDD---G~~~~~L~~ADIVLvGVSRTsK------TPlSmYLA~~GyKVAN~PLVp~v~lP~ 286 (387)
-...+-|-+-+++|=..+..+. +.....-.+-.|-|||.+--+- .=+.-+|...|++|--+ ++
T Consensus 129 g~~~~g~~~al~~l~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~--~~------ 200 (430)
T cd01981 129 VNELQAADETFEQLVRFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVV--IP------ 200 (430)
T ss_pred chHHHHHHHHHHHHHHHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEE--Ec------
Confidence 4434556666666544432221 1000011245689999864321 23566778889888431 11
Q ss_pred cccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHH-HHHHHHHhhhCCCCcEEeCCCccHHHHHH
Q 016579 287 SLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREE-LEFAGRIFAQNPVWPVIEVTGKAIEETAA 365 (387)
Q Consensus 287 eLf~v~~~KI~GLTIdPerL~~IR~eRlk~lGl~~~~~S~YA~~e~I~~E-L~~A~~lf~k~~g~pvIDVT~kSIEEtAa 365 (387)
-. ..|.+||+.--..+.+ -.|... ...|+.+.++. |+|++...--.+++|..
T Consensus 201 ------------~~---~~~~~i~~~~~A~lni-----------v~~~~~~~~~a~~L~~~~-GiP~~~~~p~G~~~t~~ 253 (430)
T cd01981 201 ------------EG---ASVDDLNELPKAWFNI-----------VPYREYGLSAALYLEEEF-GMPSVKITPIGVVATAR 253 (430)
T ss_pred ------------CC---CCHHHHHhhhhCeEEE-----------EecHHHHHHHHHHHHHHh-CCCeEeccCCChHHHHH
Confidence 11 2344444322211111 112222 33455555564 88888876666666666
Q ss_pred HHHHHH
Q 016579 366 VVLRLY 371 (387)
Q Consensus 366 ~Il~~~ 371 (387)
-+.++.
T Consensus 254 ~l~~i~ 259 (430)
T cd01981 254 FLREIQ 259 (430)
T ss_pred HHHHHH
Confidence 665544
No 468
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=38.30 E-value=22 Score=30.54 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCc
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGY 271 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~Gy 271 (387)
|++||-+.+|||=|.-.|.+..+
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~ 25 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGY 25 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999999877764433
No 469
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=38.24 E-value=58 Score=31.48 Aligned_cols=82 Identities=11% Similarity=0.112 Sum_probs=50.8
Q ss_pred CccEEEEEeCChHHH-HHHHHHHHHccCCCCccCCccceeEEeccccCCHHHH-HHHHHHHHhCCCEEEEEcCCHHHHHH
Q 016579 96 EGKSIYMVSDGTGWT-AEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQL-MVIIKQAAKDGAMLVYTLADPSMAES 173 (387)
Q Consensus 96 ~~~~IfiVSDsTGeT-Ae~v~~AaL~QF~~~~v~~~~~~~~~~~p~V~t~e~l-~~ii~~a~~~~~iV~~Tlvd~elr~~ 173 (387)
-.+++++=.+..|.. |+.+++.+....|++ +++.+ .-.|.+.+.. .+.+ ++--+|+.++-+.+.|.+
T Consensus 39 LnRQflf~~~dvGk~Ka~va~~~l~~~np~v------~i~~~-~~~i~~~~~~~~~f~----~~~DvVi~a~Dn~~aR~~ 107 (234)
T cd01484 39 LNRQFLFRPKDIGRPKSEVAAEAVNDRNPNC------KVVPY-QNKVGPEQDFNDTFF----EQFHIIVNALDNIIARRY 107 (234)
T ss_pred hccccCCChhhCChHHHHHHHHHHHHHCCCC------EEEEE-eccCChhhhchHHHH----hCCCEEEECCCCHHHHHH
Confidence 346666665667754 444444444445653 23222 1234332221 1222 233599999999999999
Q ss_pred HHHHHHHcCCCEeec
Q 016579 174 AKKACELWGIPSTDV 188 (387)
Q Consensus 174 l~~~~~~~gi~~vDl 188 (387)
+.+.|.++++|+||.
T Consensus 108 ln~~c~~~~iplI~~ 122 (234)
T cd01484 108 VNGMLIFLIVPLIES 122 (234)
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999994
No 470
>PRK06904 replicative DNA helicase; Validated
Probab=38.23 E-value=4.1e+02 Score=28.31 Aligned_cols=109 Identities=20% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCCCcCcEEEE-ccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhc--C
Q 016579 242 QNLQKADIILS-GVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSL--G 318 (387)
Q Consensus 242 ~~L~~ADIVLv-GVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~l--G 318 (387)
.||..-|+|+| |-+..|||=+++-+|...-+.-+. +--+|-|.++.+.|.. |+-+. |
T Consensus 216 ~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~----------------~Vl~fSlEMs~~ql~~----Rlla~~s~ 275 (472)
T PRK06904 216 AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEK----------------PVLVFSLEMPAEQIMM----RMLASLSR 275 (472)
T ss_pred hccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCC----------------eEEEEeccCCHHHHHH----HHHHhhCC
Confidence 57888887765 567999999998888432111011 1125677777776664 33221 1
Q ss_pred CCCC--CCC-CCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHh
Q 016579 319 FRDE--IRS-NYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYH 372 (387)
Q Consensus 319 l~~~--~~S-~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~ 372 (387)
++.. ... .+.+.+. .-+..|-..+.+.+++-+-|..+.+++|+-+.+-++..
T Consensus 276 v~~~~i~~g~~l~~~e~--~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~ 330 (472)
T PRK06904 276 VDQTKIRTGQNLDQQDW--AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYR 330 (472)
T ss_pred CCHHHhccCCCCCHHHH--HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH
Confidence 1000 000 1211111 01112222333223466777777778887777765543
No 471
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=38.15 E-value=19 Score=35.59 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=28.3
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeeccccC
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIVM 280 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp 280 (387)
|.|||...+|||-+==-|.+...+++|||..-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftT 32 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCT 32 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccc
Confidence 46899999999998888888778999999874
No 472
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=38.12 E-value=24 Score=28.98 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.8
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+++|..++|||-+.-.|..+
T Consensus 6 i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 6 VAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999988743
No 473
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=38.04 E-value=21 Score=30.68 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.7
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
|+++|.+++|||=+.-.|.+.
T Consensus 6 i~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 899999999999998888754
No 474
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=38.00 E-value=23 Score=30.33 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEccCCCCCChhhHHhhhcCce
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyK 272 (387)
|+++|-+++|||=+...|.+..+.
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~~~ 26 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDAFP 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCC
Confidence 899999999999998877755443
No 475
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=37.86 E-value=29 Score=38.09 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCce
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYK 272 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyK 272 (387)
|+|+|.++||||-++-.|| +.|+.
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999 44543
No 476
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=37.84 E-value=24 Score=35.37 Aligned_cols=25 Identities=40% Similarity=0.494 Sum_probs=20.5
Q ss_pred CCCcCcEE-EEccCCCCCChhhHHhh
Q 016579 243 NLQKADII-LSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 243 ~L~~ADIV-LvGVSRTsKTPlSmYLA 267 (387)
|+..-+|+ |.|.+++|||.+++-||
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~ 117 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLA 117 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHH
Confidence 55555555 88999999999999887
No 477
>PRK06921 hypothetical protein; Provisional
Probab=37.76 E-value=21 Score=34.78 Aligned_cols=30 Identities=40% Similarity=0.455 Sum_probs=25.6
Q ss_pred EEEEccCCCCCChhhHHhhh----c-Cceeeeccc
Q 016579 249 IILSGVSRTGKTPLSIYLAQ----K-GYKVANVPI 278 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~----~-GyKVAN~PL 278 (387)
++|.|.++||||=|+.=+|+ + |++|.=++.
T Consensus 120 l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 120 IALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred EEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 89999999999999988774 4 888877765
No 478
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=37.76 E-value=1.1e+02 Score=31.09 Aligned_cols=78 Identities=24% Similarity=0.177 Sum_probs=53.7
Q ss_pred CcEEEEecChhHHHHHHHH-HHhhcCCCCCCCCCCCCH-HHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHH
Q 016579 294 EKVFGLTINPLVLQSIRKA-RARSLGFRDEIRSNYSEM-DYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLY 371 (387)
Q Consensus 294 ~KI~GLTIdPerL~~IR~e-Rlk~lGl~~~~~S~YA~~-e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~ 371 (387)
--.|=|++.-+.+++=|=. |..-.-... +++.|..- +.++.=-+|--+.-+++ |+||||.. -|+||...|++.+
T Consensus 210 ~~~~~l~i~dee~Hr~RF~~R~~~t~~~r-p~~Ryl~yf~EiR~I~Dyl~~~Are~-gVPvI~n~--di~etv~~il~~i 285 (299)
T COG2074 210 VFMFMLYIADEELHRERFYDRIRYTHASR-PGGRYLEYFKEIRTIHDYLVERAREH-GVPVIEND--DIDETVDRILEDI 285 (299)
T ss_pred eEEEEEEeCCHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHHHHHHHHHhc-CCCeeccc--cHHHHHHHHHHHH
Confidence 4578899999999886532 322221122 46677653 44555556777777887 99999754 5999999999999
Q ss_pred hccc
Q 016579 372 HDRK 375 (387)
Q Consensus 372 ~~r~ 375 (387)
.++.
T Consensus 286 ~~~~ 289 (299)
T COG2074 286 RKRT 289 (299)
T ss_pred HHHH
Confidence 7764
No 479
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=37.74 E-value=23 Score=29.53 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=21.6
Q ss_pred EEEEccCCCCCChhhHHhhhc-Cceeeecc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK-GYKVANVP 277 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~-GyKVAN~P 277 (387)
|+++|.+++|||-+.-.|.+. ...+-+.|
T Consensus 5 i~i~G~~~~GKstli~~l~~~~~~~~~~~~ 34 (174)
T cd01895 5 IAIIGRPNVGKSSLVNALLGEERVIVSDIA 34 (174)
T ss_pred EEEEcCCCCCHHHHHHHHhCccceeccCCC
Confidence 899999999999998888643 33344444
No 480
>PRK13975 thymidylate kinase; Provisional
Probab=37.74 E-value=18 Score=32.18 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhhh-cCc
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGY 271 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~Gy 271 (387)
|++.|..++|||=++--||. .+.
T Consensus 5 I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 89999999999999999994 454
No 481
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=37.72 E-value=15 Score=35.68 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhCCCCcEEe-CCCccHHHHHHHHHHHHhcc
Q 016579 335 EELEFAGRIFAQNPVWPVIE-VTGKAIEETAAVVLRLYHDR 374 (387)
Q Consensus 335 ~EL~~A~~lf~k~~g~pvID-VT~kSIEEtAa~Il~~~~~r 374 (387)
+=+.-|+.++.+ +.+-+-| =|+--=.+++..|++++.+.
T Consensus 149 QRVAIARAL~~~-P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 149 QRVAIARALINN-PKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HHHHHHHHHhcC-CCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 346677888776 5544443 35555577888888887654
No 482
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=37.70 E-value=1.5e+02 Score=24.67 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=39.9
Q ss_pred HHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCC
Q 016579 149 VIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVS 203 (387)
Q Consensus 149 ~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~ 203 (387)
+.++.+++.. -+++--=+|+.+-..+...|++++||++.+ |-+..|.+..|.+
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V--~s~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF--KSKHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE--CCHHHHHHHhCCC
Confidence 3444444333 356666678999999999999999999875 6688888888876
No 483
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=37.70 E-value=85 Score=31.80 Aligned_cols=205 Identities=14% Similarity=0.118 Sum_probs=105.4
Q ss_pred ccCCHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHh--CCCCCCCCCCCCCCC
Q 016579 140 GIDDVEQLMVIIKQAAKDG--AMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHL--GVSPSGLPRGAPGRN 215 (387)
Q Consensus 140 ~V~t~e~l~~ii~~a~~~~--~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~l--G~~p~~~~~~~pG~~ 215 (387)
||=+.+.+.+-+++.+.-. .-|+|.+---.....++ ...+.|. .+|+-++-=-.+...+ |.+|..+.-..|+
T Consensus 15 ~v~d~~~l~~~~~~l~~~~~~~~~~yAvKaN~~~~vl~-~l~~~G~-g~dvaS~~El~~al~~~~G~~~~~Iif~gp~-- 90 (368)
T cd06840 15 YVYDLETVRARARQVSALKAVDSLFYAIKANPHPDVLR-TLEEAGL-GFECVSIGELDLVLKLFPDLDPRRVLFTPNF-- 90 (368)
T ss_pred EEecHHHHHHHHHHHHhCCCCCeEEEEeccCCCHHHHH-HHHHcCC-eEEEcCHHHHHHHHHcccCCCcceEEEcCCC--
Confidence 3446666666666554322 24777764322333333 2223453 6888776655555555 7877542221222
Q ss_pred CCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCc
Q 016579 216 FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEK 295 (387)
Q Consensus 216 ~~ld~~YF~RIeAIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~K 295 (387)
|..+-|+||+++.--.+.+++.|-+-| .+..++ ++-|+++. |-+.... ...+..-....
T Consensus 91 --------K~~~~l~~a~~~gv~i~~Ds~~El~~i----~~~~~~------~~v~lRi~--~~~~~~~-~~~~~~~~~~s 149 (368)
T cd06840 91 --------AARSEYEQALELGVNVTVDNLHPLREW----PELFRG------REVILRID--PGQGEGH-HKHVRTGGPES 149 (368)
T ss_pred --------CCHHHHHHHHHCCCEEEECCHHHHHHH----HHhccc------CCEEEEEC--CCCCCCC-CCceecCCCCC
Confidence 445678899998665666666665543 122221 34566653 2111111 11121111223
Q ss_pred EEEEecChhHHHHHHHHHHhhcC-----CCCCCCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCC------------Cc
Q 016579 296 VFGLTINPLVLQSIRKARARSLG-----FRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVT------------GK 358 (387)
Q Consensus 296 I~GLTIdPerL~~IR~eRlk~lG-----l~~~~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT------------~k 358 (387)
-||++++ .+.++-+ .++.+| +.---+|++.+.+..+.-++.+.++-++...+.+||+= .-
T Consensus 150 kFG~~~~--~~~~~l~-~~~~~~l~l~GlhfH~GS~~~~~~~~~~~~~~~~~l~~~~~~~~~idiGGGf~~~y~~~~~~~ 226 (368)
T cd06840 150 KFGLDVD--ELDEARD-LAKKAGIIVIGLHAHSGSGVEDTDHWARHGDYLASLARHFPAVRILNVGGGLGIPEAPGGRPI 226 (368)
T ss_pred CCCCCHH--HHHHHHH-HHHhCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEecCcccCCCCCCCCCC
Confidence 3999875 3333321 222333 32114567778777776666666665543345677753 13
Q ss_pred cHHHHHHHHHHHHh
Q 016579 359 AIEETAAVVLRLYH 372 (387)
Q Consensus 359 SIEEtAa~Il~~~~ 372 (387)
.+|+.++.|-++..
T Consensus 227 ~~~~~~~~i~~~~~ 240 (368)
T cd06840 227 DLDALDAALAAAKA 240 (368)
T ss_pred CHHHHHHHHHHHHh
Confidence 57888877766543
No 484
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=37.45 E-value=23 Score=33.71 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChhhHHhh----hcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLA----QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA----~~GyKVAN~ 276 (387)
|.+.|=-++|||=+|.-|| ++|+||.=|
T Consensus 3 ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 3 IAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred eEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5667999999999888776 789998644
No 485
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=37.29 E-value=99 Score=28.93 Aligned_cols=82 Identities=22% Similarity=0.293 Sum_probs=56.8
Q ss_pred HHHHccCCCCccCCccceeEEeccccCCH---HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHH
Q 016579 116 NAALGQFEHCLVDRNCAVNTHLFSGIDDV---EQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPI 192 (387)
Q Consensus 116 ~AaL~QF~~~~v~~~~~~~~~~~p~V~t~---e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~ 192 (387)
.-.+.+|++. ..-+..||-|+|. -|.++.=+++.+-+..+|+|| .-+|-=..+++|...||.-+=.++-+
T Consensus 36 ~v~l~~~~gk------~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~I-S~DLPFAq~RfC~aeGi~nv~~lSd~ 108 (158)
T COG2077 36 DVSLADFAGK------KKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCI-SMDLPFAQKRFCGAEGIENVITLSDF 108 (158)
T ss_pred ceeccccCCc------eEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEE-eCCChhHHhhhhhhcCcccceEhhhh
Confidence 3357788874 3457789999986 344544455666667888888 55677788899999999876666655
Q ss_pred HHH-HHHHhCCCC
Q 016579 193 TEA-IASHLGVSP 204 (387)
Q Consensus 193 i~~-le~~lG~~p 204 (387)
-+. +-+..|+.=
T Consensus 109 r~~~Fge~yGv~I 121 (158)
T COG2077 109 RDRAFGENYGVLI 121 (158)
T ss_pred hhhhhhHhhCEEe
Confidence 444 555556554
No 486
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=37.27 E-value=60 Score=31.51 Aligned_cols=154 Identities=17% Similarity=0.293 Sum_probs=79.3
Q ss_pred EEeCChHHHHHHHHHHHHccCCCCccCCccceeEEecc-----ccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH
Q 016579 102 MVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFS-----GIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKK 176 (387)
Q Consensus 102 iVSDsTGeTAe~v~~AaL~QF~~~~v~~~~~~~~~~~p-----~V~t~e~l~~ii~~a~~~~~iV~~Tlvd~elr~~l~~ 176 (387)
||+| |.=.+.+...+...|+-+. .+....+| ||++. ++.|.++.+-+-+|.|++ .|++--.|-+
T Consensus 2 vi~~--G~yGeR~~~~i~~~~~~~~-----~v~~~~~p~~l~efId~p---ee~Lp~i~~~Dl~I~y~l-HPDl~~~l~~ 70 (217)
T PF02593_consen 2 VIYD--GKYGERVIENIKNYFDFCR-----SVIVYEIPEDLPEFIDDP---EEYLPKIPEADLLIAYGL-HPDLTYELPE 70 (217)
T ss_pred eeee--CcchHHHHHHHHhcCCCCc-----eEEEEeCCccccccccCh---HHHccCCCCCCEEEEecc-CchhHHHHHH
Confidence 4555 7777888887877775421 25555555 24444 334444333333444554 8888888888
Q ss_pred HHHHcCCCEeec--chH------HHHHHHHHhCCCCCCCCCCCCCCCCCCc-------HHHHhhhhhhhhhhhCCCCCCC
Q 016579 177 ACELWGIPSTDV--LGP------ITEAIASHLGVSPSGLPRGAPGRNFPLS-------EEYFRRIEAIEFTIKQDDGALP 241 (387)
Q Consensus 177 ~~~~~gi~~vDl--lgp------~i~~le~~lG~~p~~~~~~~pG~~~~ld-------~~YF~RIeAIeFavkhDDG~~~ 241 (387)
.+++.|+..|=+ ..| -+....+.+|+.-. -|-..-.|+ ++|.+++=.=+|-|.-+||+=
T Consensus 71 ~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~-----~P~~~CsL~~~~~p~i~~F~~~fGkP~~ei~v~~~~I- 144 (217)
T PF02593_consen 71 IAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVE-----FPKPFCSLEENGNPQIDEFAEYFGKPKVEIEVENGKI- 144 (217)
T ss_pred HHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceee-----cCccccccCCCCChhHHHHHHHhCCceEEEEecCCcE-
Confidence 888788877621 111 24444445553321 111112222 445555544556666666632
Q ss_pred CCCCcCcEEEEccCCCCCChhhHHhh--hcCceeeeccccC
Q 016579 242 QNLQKADIILSGVSRTGKTPLSIYLA--QKGYKVANVPIVM 280 (387)
Q Consensus 242 ~~L~~ADIVLvGVSRTsKTPlSmYLA--~~GyKVAN~PLVp 280 (387)
.+++|+ ==|=||= ..|.| -.|..+-+.+..-
T Consensus 145 ---~~V~Vl--R~aPCGs---T~~vAk~l~G~~~~d~~~~~ 177 (217)
T PF02593_consen 145 ---KDVKVL--RSAPCGS---TWFVAKRLIGKEVEDAPEKA 177 (217)
T ss_pred ---EEEEEE--ecCCCcc---HHHHHHHhcCCccchhhhhh
Confidence 333333 1222333 36777 2466666655443
No 487
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=37.23 E-value=90 Score=30.84 Aligned_cols=95 Identities=12% Similarity=0.234 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhh
Q 016579 148 MVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIE 227 (387)
Q Consensus 148 ~~ii~~a~~~~~iV~~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIe 227 (387)
.++++++. .+.+++.-..++++. +.|+++||+++|+++ .+.+ +. .......+ -
T Consensus 84 ~~~l~~~~-~~~~~~~G~~~~~l~----~~a~~~gi~v~~~~~--~~~v---------------a~-~n~~~~Ae----~ 136 (287)
T TIGR02853 84 PELLESTK-GHCTIYVGISNPYLE----QLAADAGVKLIELFE--RDDV---------------AI-YNSIPTAE----G 136 (287)
T ss_pred HHHHHhcC-CCCEEEEecCCHHHH----HHHHHCCCeEEEEEe--ccce---------------EE-EccHhHHH----H
Confidence 34555554 356777777778776 488899999999988 1111 11 01111111 1
Q ss_pred hhhhhhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhhhcCceee
Q 016579 228 AIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVA 274 (387)
Q Consensus 228 AIeFavkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA~~GyKVA 274 (387)
||..++++ ...+|...-++++|--|.|+ .+...|+.+|.+|.
T Consensus 137 ai~~al~~----~~~~l~gk~v~IiG~G~iG~-avA~~L~~~G~~V~ 178 (287)
T TIGR02853 137 AIMMAIEH----TDFTIHGSNVMVLGFGRTGM-TIARTFSALGARVF 178 (287)
T ss_pred HHHHHHHh----cCCCCCCCEEEEEcChHHHH-HHHHHHHHCCCEEE
Confidence 23344433 22367778899999999995 57778888897754
No 488
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=37.12 E-value=23 Score=30.47 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=20.5
Q ss_pred EEEEccCCCCCChhhHHhhhcCcee
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKV 273 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKV 273 (387)
|+++|-+++|||-+--.|.+.-+..
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~~~~ 28 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDSFTS 28 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 8999999999999888887655433
No 489
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=37.03 E-value=97 Score=32.21 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHHHHHHHHHcCCCEe
Q 016579 143 DVEQLMVIIKQAAKDG-AMLVYTLADPSMAESAKKACELWGIPST 186 (387)
Q Consensus 143 t~e~l~~ii~~a~~~~-~iV~~Tlvd~elr~~l~~~~~~~gi~~v 186 (387)
|-+++.++|+.|.+++ ++-.+.+.|.++.+.+-+.|++.+.|+|
T Consensus 5 ~~~~~k~~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVI 49 (350)
T PRK09197 5 TGEDYQEMFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVI 49 (350)
T ss_pred cHHHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEE
Confidence 3455566666655555 5555666666666666666665555543
No 490
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=36.96 E-value=18 Score=38.14 Aligned_cols=29 Identities=41% Similarity=0.672 Sum_probs=23.0
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceeeeccccC
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVM 280 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVAN~PLVp 280 (387)
|+|+|.++||||-|.|=+|+ .|=+ +|+++
T Consensus 53 iLiaGppGtGKTAlA~~ia~eLG~~---~PF~~ 82 (398)
T PF06068_consen 53 ILIAGPPGTGKTALAMAIAKELGED---VPFVS 82 (398)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHCTTT---S-EEE
T ss_pred EEEeCCCCCCchHHHHHHHHHhCCC---CCeeE
Confidence 88999999999999999994 6855 56665
No 491
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=36.95 E-value=21 Score=32.91 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEccCCCCCChhhHHhhhc
Q 016579 249 IILSGVSRTGKTPLSIYLAQK 269 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~ 269 (387)
++|.|.++||||=|...+++.
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998853
No 492
>PRK06749 replicative DNA helicase; Provisional
Probab=36.87 E-value=4.2e+02 Score=27.80 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=63.3
Q ss_pred CCCCCcCcEEEE-ccCCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhc--
Q 016579 241 PQNLQKADIILS-GVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSL-- 317 (387)
Q Consensus 241 ~~~L~~ADIVLv-GVSRTsKTPlSmYLA~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eRlk~l-- 317 (387)
..||..-|+|+| |-+..|||=+.+-+|...-+- +. +--+|-|.++++.|.. |+-+.
T Consensus 180 t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~-g~----------------~v~~fSlEMs~~ql~~----R~ls~~~ 238 (428)
T PRK06749 180 TCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKS-GA----------------AVGLFSLEMSSKQLLK----RMASCVG 238 (428)
T ss_pred hCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhc-CC----------------CEEEEEeeCCHHHHHH----HHHHhcc
Confidence 357888886655 567899999999888432110 00 1136888888888764 44222
Q ss_pred CCCCC---CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCccHHHHHHHHHHHHhc
Q 016579 318 GFRDE---IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKAIEETAAVVLRLYHD 373 (387)
Q Consensus 318 Gl~~~---~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kSIEEtAa~Il~~~~~ 373 (387)
+++.. ....+-+.+.. +.+..|-..+.+. .+-+.|.++.+++++-+.+-.+..+
T Consensus 239 ~i~~~~l~~~~~~l~~~e~-~~~~~a~~~l~~~-~i~i~d~~~~t~~~I~~~~r~~~~~ 295 (428)
T PRK06749 239 EVSGGRLKNPKHRFAMEDW-EKVSKAFAEIGEL-PLEIYDNAGVTVQDIWMQTRKLKRK 295 (428)
T ss_pred CCCHHHHhcCcccCCHHHH-HHHHHHHHHHhcC-CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 11100 00012222221 2344555555564 6778888888899888877665543
No 493
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=36.77 E-value=23 Score=31.70 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=21.7
Q ss_pred EEEEccCCCCCChhhHHhhh-cCceee
Q 016579 249 IILSGVSRTGKTPLSIYLAQ-KGYKVA 274 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~-~GyKVA 274 (387)
|++-|..+||||-++=.|++ .|+.+.
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 78999999999999999995 565433
No 494
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.65 E-value=91 Score=33.61 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=18.2
Q ss_pred cEEEEccCCCCCChhhHHhh
Q 016579 248 DIILSGVSRTGKTPLSIYLA 267 (387)
Q Consensus 248 DIVLvGVSRTsKTPlSmYLA 267 (387)
=|.|||+.++|||=|..=||
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 48899999999999998888
No 495
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=36.54 E-value=15 Score=32.87 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=0.0
Q ss_pred EccCCCCCChhhHHhh-hcCc
Q 016579 252 SGVSRTGKTPLSIYLA-QKGY 271 (387)
Q Consensus 252 vGVSRTsKTPlSmYLA-~~Gy 271 (387)
+|+|+||||=++-.|| ..|.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~ 21 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHA 21 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCC
No 496
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=36.53 E-value=69 Score=34.47 Aligned_cols=109 Identities=24% Similarity=0.214 Sum_probs=64.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCEEE-EEcCCHHHHHHHHHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 016579 140 GIDDVEQLMVIIKQAAKDGAMLV-YTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPL 218 (387)
Q Consensus 140 ~V~t~e~l~~ii~~a~~~~~iV~-~Tlvd~elr~~l~~~~~~~gi~~vDllgp~i~~le~~lG~~p~~~~~~~pG~~~~l 218 (387)
.|.+.+.+.+.| ..|++|= .-+.+..+.+.+.+.- ..-..|.+.|+..- |+|
T Consensus 122 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~w~------------~~~~~~~~~~~~~~-----------~~L 174 (460)
T PLN03046 122 LVSSVQDLYEFI----CSGPLVDKIGYTPEKIAQSIDKWL------------LYGSQLCRLFQLNE-----------LKL 174 (460)
T ss_pred ccccHHHHHHHH----hcCccchhccCCHHHHHHHHHHHH------------HHHHHHHHHhcccc-----------ccC
Confidence 466666665553 5666654 2344555555554432 24456677777654 567
Q ss_pred cHHHHhhhhhhhh-------------hhhCCCCCCCCCCCcCcEEEEccCCCCCChhhHHhh----hcCceeeeccc
Q 016579 219 SEEYFRRIEAIEF-------------TIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLA----QKGYKVANVPI 278 (387)
Q Consensus 219 d~~YF~RIeAIeF-------------avkhDDG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA----~~GyKVAN~PL 278 (387)
++.|-.|+...=. .-++-+|...+-+- |-|.|.|+||||=++-.|. ..|++++-|.+
T Consensus 175 ~~~~~~~~~~~ylPl~~w~~~~i~~h~~~~~~~~~~~PlI---IGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISi 248 (460)
T PLN03046 175 TEPQKARIYHYYIPVFIWCEDQIAEHRSKFKDGDDIPPLV---IGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSI 248 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEE---EEEECCCCCCHHHHHHHHHHHhcccCCceEEEEE
Confidence 7777777763211 11222333333232 5589999999999998886 24777877743
No 497
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=36.53 E-value=21 Score=38.44 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=33.7
Q ss_pred HhhhhhhhhhhhCC-CCCCCCCCCcCcEEEEccCCCCCChhhHHhh-hcCceeeec
Q 016579 223 FRRIEAIEFTIKQD-DGALPQNLQKADIILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 223 F~RIeAIeFavkhD-DG~~~~~L~~ADIVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
=++|+-+.-.++.. -|..... =++|-|+++||||=+---|| ..|++|.-.
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~----iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKR----ILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcc----eEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 35555555555532 2332222 36778999999999998999 679998753
No 498
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=36.50 E-value=65 Score=34.13 Aligned_cols=97 Identities=24% Similarity=0.241 Sum_probs=63.8
Q ss_pred cCcEEEEccCCCCCChhhHHhh-hcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHH--HhhcCCCCC
Q 016579 246 KADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKAR--ARSLGFRDE 322 (387)
Q Consensus 246 ~ADIVLvGVSRTsKTPlSmYLA-~~GyKVAN~PLVp~v~lP~eLf~v~~~KI~GLTIdPerL~~IR~eR--lk~lGl~~~ 322 (387)
..=|+|||+-+.|||-|--=|| ++. + .-...||==+|.|--|.-+.=+-+ -+-||++-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~-----------------~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV-----------------M-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-----------------h-hccCcceEEEEeccchhhHHHHHHHHHHHhCCce-
Confidence 6679999999999999988888 332 1 222334444577877766643322 23456542
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhCCCCcEEeCCCcc------HHHHHHHHH
Q 016579 323 IRSNYSEMDYVREELEFAGRIFAQNPVWPVIEVTGKA------IEETAAVVL 368 (387)
Q Consensus 323 ~~S~YA~~e~I~~EL~~A~~lf~k~~g~pvIDVT~kS------IEEtAa~Il 368 (387)
.-.|+ -+||+.|-..|+.. ..-.||++++| |+|+.+-+-
T Consensus 264 -~vv~~-----~~el~~ai~~l~~~-d~ILVDTaGrs~~D~~~i~el~~~~~ 308 (407)
T COG1419 264 -EVVYS-----PKELAEAIEALRDC-DVILVDTAGRSQYDKEKIEELKELID 308 (407)
T ss_pred -EEecC-----HHHHHHHHHHhhcC-CEEEEeCCCCCccCHHHHHHHHHHHh
Confidence 11222 35788888888885 78889999987 666666553
No 499
>PLN02422 dephospho-CoA kinase
Probab=36.43 E-value=26 Score=33.96 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=27.1
Q ss_pred EEEEccCCCCCChhhHHhhhcCceeeecccc
Q 016579 249 IILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA~~GyKVAN~PLV 279 (387)
|.|.|-.+||||=.|=+|+.+|+.+-|---+
T Consensus 4 igltG~igsGKstv~~~l~~~g~~~idaD~~ 34 (232)
T PLN02422 4 VGLTGGIASGKSTVSNLFKSSGIPVVDADKV 34 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCeEEehhHH
Confidence 7889999999999999999999999865433
No 500
>PRK04195 replication factor C large subunit; Provisional
Probab=36.38 E-value=24 Score=37.00 Aligned_cols=28 Identities=36% Similarity=0.569 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChhhHHhh-hcCceeeec
Q 016579 249 IILSGVSRTGKTPLSIYLA-QKGYKVANV 276 (387)
Q Consensus 249 IVLvGVSRTsKTPlSmYLA-~~GyKVAN~ 276 (387)
++|.|.++||||=+.-.|| ..||.+..+
T Consensus 42 lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 42 LLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 8999999999999999999 577766543
Done!