Query 016580
Match_columns 387
No_of_seqs 189 out of 1851
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 4.3E-37 9.3E-42 291.2 30.3 318 13-338 8-336 (358)
2 PRK11272 putative DMT superfam 100.0 1.2E-31 2.6E-36 249.8 27.7 280 19-334 9-289 (292)
3 PRK11453 O-acetylserine/cystei 100.0 3.5E-31 7.5E-36 247.6 27.6 279 20-333 6-290 (299)
4 PRK10532 threonine and homoser 100.0 8.1E-31 1.8E-35 244.3 28.7 282 14-338 8-289 (293)
5 PRK11689 aromatic amino acid e 100.0 4E-31 8.7E-36 246.6 24.4 285 16-333 2-290 (295)
6 PRK15430 putative chlorampheni 100.0 2.2E-30 4.7E-35 241.7 24.8 281 13-332 3-287 (296)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 6.1E-30 1.3E-34 234.7 25.6 259 30-326 1-260 (260)
8 TIGR00817 tpt Tpt phosphate/ph 100.0 7.4E-29 1.6E-33 232.4 25.9 284 22-336 6-299 (302)
9 TIGR03340 phn_DUF6 phosphonate 100.0 7.1E-27 1.5E-31 216.6 26.6 274 20-327 3-280 (281)
10 PF06027 DUF914: Eukaryotic pr 100.0 3.2E-26 6.9E-31 212.6 30.1 302 14-338 9-313 (334)
11 PTZ00343 triose or hexose phos 100.0 5.3E-26 1.2E-30 216.3 26.3 284 16-331 47-349 (350)
12 TIGR00688 rarD rarD protein. T 99.9 3.4E-25 7.5E-30 202.7 24.2 248 18-305 2-255 (256)
13 COG0697 RhaT Permeases of the 99.9 4.7E-23 1E-27 191.6 28.1 282 15-331 4-288 (292)
14 COG5006 rhtA Threonine/homoser 99.9 8.3E-23 1.8E-27 175.9 24.2 277 18-336 12-288 (292)
15 COG2962 RarD Predicted permeas 99.9 2E-21 4.3E-26 172.1 22.2 281 15-334 4-287 (293)
16 TIGR00776 RhaT RhaT L-rhamnose 99.9 7E-21 1.5E-25 176.7 23.6 274 19-331 2-289 (290)
17 KOG4510 Permease of the drug/m 99.9 9.9E-24 2.1E-28 182.6 2.3 294 15-333 35-328 (346)
18 PF08449 UAA: UAA transporter 99.9 4.6E-19 9.9E-24 166.0 26.1 278 35-335 17-302 (303)
19 KOG2765 Predicted membrane pro 99.8 8.1E-20 1.8E-24 165.9 19.4 301 14-335 10-395 (416)
20 KOG1441 Glucose-6-phosphate/ph 99.8 1.9E-18 4E-23 158.8 11.8 292 16-338 15-315 (316)
21 KOG2766 Predicted membrane pro 99.7 1.1E-16 2.4E-21 138.3 8.6 282 16-332 16-301 (336)
22 KOG2234 Predicted UDP-galactos 99.7 1.4E-13 3E-18 125.9 28.2 299 18-335 15-327 (345)
23 KOG1580 UDP-galactose transpor 99.6 2.1E-14 4.6E-19 122.7 17.4 224 89-334 91-317 (337)
24 COG2510 Predicted membrane pro 99.6 3.1E-15 6.7E-20 115.9 10.5 135 18-160 3-138 (140)
25 PF04142 Nuc_sug_transp: Nucle 99.6 6.1E-14 1.3E-18 126.3 18.1 229 78-321 13-244 (244)
26 KOG1443 Predicted integral mem 99.6 8.3E-13 1.8E-17 117.5 23.3 253 47-328 45-313 (349)
27 KOG1581 UDP-galactose transpor 99.6 7.4E-14 1.6E-18 124.2 16.5 266 46-335 50-318 (327)
28 KOG1444 Nucleotide-sugar trans 99.6 1.2E-12 2.6E-17 118.1 24.3 292 14-338 8-308 (314)
29 COG2510 Predicted membrane pro 99.6 6.9E-14 1.5E-18 108.5 13.9 136 192-330 4-139 (140)
30 KOG3912 Predicted integral mem 99.6 1.6E-13 3.4E-18 120.4 15.5 280 29-329 14-333 (372)
31 PF00892 EamA: EamA-like trans 99.5 1.2E-13 2.6E-18 111.6 9.4 125 28-160 1-125 (126)
32 PF00892 EamA: EamA-like trans 99.4 5.6E-13 1.2E-17 107.7 7.8 125 201-329 1-125 (126)
33 KOG1583 UDP-N-acetylglucosamin 99.4 1.2E-11 2.5E-16 108.7 12.8 268 48-334 34-318 (330)
34 KOG4314 Predicted carbohydrate 99.3 3.7E-11 8E-16 100.4 10.8 212 94-334 64-280 (290)
35 PF06800 Sugar_transport: Suga 99.3 1.3E-09 2.7E-14 98.1 21.1 249 45-327 10-268 (269)
36 COG5070 VRG4 Nucleotide-sugar 99.2 4.1E-11 9E-16 102.0 9.2 282 32-340 20-306 (309)
37 TIGR00950 2A78 Carboxylate/Ami 99.2 2.8E-10 6E-15 104.3 15.2 134 15-157 125-260 (260)
38 KOG1442 GDP-fucose transporter 99.2 3.5E-11 7.5E-16 105.5 7.6 278 35-339 45-336 (347)
39 KOG1582 UDP-galactose transpor 99.2 4.5E-10 9.7E-15 98.5 14.2 277 28-334 53-336 (367)
40 PRK13499 rhamnose-proton sympo 99.2 1.2E-08 2.5E-13 95.5 24.3 299 16-332 5-343 (345)
41 PF13536 EmrE: Multidrug resis 99.2 6.6E-11 1.4E-15 94.0 7.5 104 52-162 2-107 (113)
42 PF03151 TPT: Triose-phosphate 99.2 4.3E-10 9.3E-15 94.4 12.1 138 192-330 1-153 (153)
43 PF05653 Mg_trans_NIPA: Magnes 99.1 2.9E-09 6.4E-14 98.8 17.4 275 15-332 4-294 (300)
44 PRK10532 threonine and homoser 99.1 3.7E-09 8.1E-14 98.6 15.7 137 17-163 147-283 (293)
45 PRK15430 putative chlorampheni 99.1 1.3E-09 2.9E-14 101.7 12.3 138 188-329 5-144 (296)
46 TIGR03340 phn_DUF6 phosphonate 99.1 2.7E-09 5.9E-14 98.9 13.6 134 193-331 3-136 (281)
47 PRK11272 putative DMT superfam 99.1 4.8E-09 1E-13 97.9 15.1 137 17-161 149-285 (292)
48 TIGR00688 rarD rarD protein. T 99.0 2.5E-09 5.3E-14 97.8 11.5 136 191-329 2-141 (256)
49 PLN00411 nodulin MtN21 family 99.0 2.2E-08 4.8E-13 95.4 15.7 140 17-165 188-332 (358)
50 PRK11689 aromatic amino acid e 98.9 2.1E-08 4.5E-13 93.6 14.5 133 17-161 155-287 (295)
51 TIGR00803 nst UDP-galactose tr 98.9 1.3E-08 2.8E-13 91.0 10.1 206 109-328 4-222 (222)
52 PRK11453 O-acetylserine/cystei 98.8 1.5E-07 3.3E-12 88.1 15.6 138 17-161 142-287 (299)
53 PRK02971 4-amino-4-deoxy-L-ara 98.8 7.9E-08 1.7E-12 77.6 11.1 122 191-333 2-125 (129)
54 PF13536 EmrE: Multidrug resis 98.8 2.4E-08 5.3E-13 79.2 7.4 108 226-334 3-110 (113)
55 COG4975 GlcU Putative glucose 98.7 3.5E-09 7.7E-14 91.8 2.2 277 18-331 2-286 (288)
56 TIGR00817 tpt Tpt phosphate/ph 98.7 1E-07 2.2E-12 89.3 10.4 139 17-162 144-294 (302)
57 PF03151 TPT: Triose-phosphate 98.6 9.5E-07 2.1E-11 73.9 14.0 133 19-158 1-150 (153)
58 PTZ00343 triose or hexose phos 98.6 6.4E-07 1.4E-11 85.6 13.8 139 190-330 48-186 (350)
59 PRK15051 4-amino-4-deoxy-L-ara 98.6 1.1E-06 2.3E-11 69.3 11.4 69 86-160 40-108 (111)
60 PRK15051 4-amino-4-deoxy-L-ara 98.5 5.2E-07 1.1E-11 71.0 7.4 67 264-330 43-109 (111)
61 TIGR00776 RhaT RhaT L-rhamnose 98.5 3E-06 6.5E-11 78.9 13.6 128 17-160 151-287 (290)
62 COG0697 RhaT Permeases of the 98.5 5.2E-06 1.1E-10 76.8 15.0 134 16-160 152-286 (292)
63 KOG2922 Uncharacterized conser 98.5 5E-07 1.1E-11 81.9 7.6 270 14-332 17-308 (335)
64 COG2962 RarD Predicted permeas 98.4 2E-06 4.3E-11 77.2 10.5 143 188-333 4-147 (293)
65 PRK02971 4-amino-4-deoxy-L-ara 98.4 7.4E-06 1.6E-10 66.2 11.6 119 18-161 2-122 (129)
66 PF06027 DUF914: Eukaryotic pr 98.3 1.7E-05 3.7E-10 74.4 14.5 144 13-164 163-308 (334)
67 COG5006 rhtA Threonine/homoser 98.2 2.8E-05 6.2E-10 68.2 11.7 137 15-160 145-281 (292)
68 PF06800 Sugar_transport: Suga 98.0 0.0001 2.2E-09 66.6 11.7 118 14-139 134-251 (269)
69 PF06379 RhaT: L-rhamnose-prot 98.0 0.002 4.4E-08 59.7 19.9 300 16-331 5-341 (344)
70 PF08449 UAA: UAA transporter 97.9 0.00015 3.2E-09 68.0 12.5 132 203-340 12-146 (303)
71 PRK10452 multidrug efflux syst 97.9 9.1E-05 2E-09 58.7 9.2 68 265-332 37-105 (120)
72 PF04657 DUF606: Protein of un 97.8 0.00031 6.6E-09 57.6 10.2 132 192-327 2-138 (138)
73 KOG4510 Permease of the drug/m 97.6 2.8E-05 6E-10 68.8 2.4 138 15-161 188-325 (346)
74 PF05653 Mg_trans_NIPA: Magnes 97.6 0.0003 6.6E-09 65.5 9.0 121 187-332 3-124 (300)
75 PRK09541 emrE multidrug efflux 97.5 0.00021 4.6E-09 55.9 6.0 67 266-332 38-105 (110)
76 PRK10452 multidrug efflux syst 97.5 0.0004 8.7E-09 55.1 6.6 68 88-161 35-103 (120)
77 PRK10650 multidrug efflux syst 97.4 0.0025 5.5E-08 49.6 10.4 64 90-159 42-106 (109)
78 COG2076 EmrE Membrane transpor 97.4 0.00055 1.2E-08 52.5 6.5 66 89-160 36-102 (106)
79 PRK09541 emrE multidrug efflux 97.4 0.00066 1.4E-08 53.1 6.9 68 88-161 35-103 (110)
80 PF04657 DUF606: Protein of un 97.3 0.0035 7.6E-08 51.3 11.1 130 20-158 3-138 (138)
81 COG3238 Uncharacterized protei 97.3 0.0023 5E-08 52.5 9.7 139 190-331 4-147 (150)
82 PF04142 Nuc_sug_transp: Nucle 97.3 0.00056 1.2E-08 61.8 6.8 79 256-335 16-94 (244)
83 PRK11431 multidrug efflux syst 97.2 0.0013 2.9E-08 50.9 7.0 65 90-160 36-101 (105)
84 PRK10650 multidrug efflux syst 97.2 0.0025 5.5E-08 49.6 8.5 63 267-329 44-107 (109)
85 PRK11431 multidrug efflux syst 97.2 0.0021 4.7E-08 49.7 7.9 64 267-330 38-102 (105)
86 PF10639 UPF0546: Uncharacteri 97.2 0.0011 2.3E-08 51.8 6.1 110 24-159 2-112 (113)
87 COG2076 EmrE Membrane transpor 97.1 0.0022 4.8E-08 49.2 7.1 65 268-332 40-105 (106)
88 PF07857 DUF1632: CEO family ( 97.1 0.01 2.2E-07 53.6 12.0 187 19-216 1-208 (254)
89 PRK13499 rhamnose-proton sympo 97.0 0.024 5.3E-07 53.5 14.6 146 14-161 170-341 (345)
90 KOG1441 Glucose-6-phosphate/ph 97.0 0.0017 3.6E-08 60.5 6.7 138 16-161 161-307 (316)
91 PF00893 Multi_Drug_Res: Small 96.9 0.0041 8.8E-08 47.2 7.1 55 267-321 38-93 (93)
92 COG4975 GlcU Putative glucose 96.9 0.00051 1.1E-08 60.3 2.3 132 192-333 3-139 (288)
93 KOG2765 Predicted membrane pro 96.9 0.0067 1.5E-07 56.6 9.7 145 13-163 242-392 (416)
94 PF00893 Multi_Drug_Res: Small 96.6 0.0054 1.2E-07 46.6 5.7 57 89-151 35-92 (93)
95 KOG2234 Predicted UDP-galactos 96.6 0.11 2.4E-06 48.5 14.8 143 191-334 15-168 (345)
96 PF07857 DUF1632: CEO family ( 96.5 0.0055 1.2E-07 55.3 6.0 133 192-336 1-140 (254)
97 PF10639 UPF0546: Uncharacteri 96.1 0.022 4.8E-07 44.5 6.3 109 198-328 3-112 (113)
98 TIGR00803 nst UDP-galactose tr 95.9 0.038 8.3E-07 49.2 8.3 59 94-158 163-221 (222)
99 COG3238 Uncharacterized protei 95.6 0.21 4.6E-06 41.1 10.7 137 18-159 5-144 (150)
100 KOG2922 Uncharacterized conser 95.6 0.011 2.4E-07 54.2 3.4 128 186-338 16-144 (335)
101 KOG1581 UDP-galactose transpor 94.4 0.49 1.1E-05 43.3 10.3 140 14-161 168-313 (327)
102 KOG1443 Predicted integral mem 93.3 1.2 2.5E-05 41.0 10.6 126 208-334 33-160 (349)
103 KOG4314 Predicted carbohydrate 93.1 0.06 1.3E-06 45.9 2.1 66 268-333 63-128 (290)
104 PF06379 RhaT: L-rhamnose-prot 93.1 0.24 5.3E-06 46.2 6.2 144 188-335 4-158 (344)
105 KOG1444 Nucleotide-sugar trans 92.9 1.3 2.8E-05 41.0 10.5 133 192-330 13-149 (314)
106 COG5070 VRG4 Nucleotide-sugar 92.6 0.67 1.4E-05 40.5 7.7 137 18-161 155-296 (309)
107 KOG1580 UDP-galactose transpor 91.4 0.4 8.7E-06 42.2 5.2 134 18-160 172-312 (337)
108 KOG3912 Predicted integral mem 87.6 0.5 1.1E-05 42.8 2.9 65 267-331 95-159 (372)
109 KOG4831 Unnamed protein [Funct 86.7 1.1 2.4E-05 34.1 3.9 111 22-160 7-124 (125)
110 KOG2766 Predicted membrane pro 85.7 0.31 6.8E-06 43.4 0.7 111 217-335 45-155 (336)
111 KOG1442 GDP-fucose transporter 85.4 1.7 3.6E-05 39.4 5.1 111 218-329 59-173 (347)
112 PRK13108 prolipoprotein diacyl 84.2 45 0.00097 33.1 14.8 25 310-334 254-278 (460)
113 PRK02237 hypothetical protein; 82.8 2.1 4.4E-05 33.0 3.9 44 290-333 65-108 (109)
114 PF02694 UPF0060: Uncharacteri 82.7 1.9 4.2E-05 33.0 3.7 41 293-333 66-106 (107)
115 KOG4831 Unnamed protein [Funct 82.6 3.7 7.9E-05 31.4 5.1 59 271-329 65-124 (125)
116 PF05977 MFS_3: Transmembrane 82.0 62 0.0013 32.8 20.6 30 188-218 253-282 (524)
117 KOG1583 UDP-N-acetylglucosamin 79.6 4.1 8.9E-05 37.0 5.2 70 269-338 75-145 (330)
118 PF06570 DUF1129: Protein of u 77.9 43 0.00094 29.2 11.3 86 23-112 90-175 (206)
119 PF05297 Herpes_LMP1: Herpesvi 76.9 0.78 1.7E-05 41.4 0.0 14 187-200 103-116 (381)
120 PF07168 Ureide_permease: Urei 76.1 1.3 2.7E-05 40.7 1.1 130 197-329 2-145 (336)
121 PF08507 COPI_assoc: COPI asso 70.1 5.8 0.00013 32.2 3.6 16 314-329 89-104 (136)
122 PF07168 Ureide_permease: Urei 69.6 2.1 4.5E-05 39.4 0.9 111 23-136 1-125 (336)
123 PF04342 DUF486: Protein of un 66.8 7 0.00015 30.0 3.1 30 299-328 77-106 (108)
124 COG1742 Uncharacterized conser 65.3 22 0.00047 27.2 5.4 46 288-333 62-107 (109)
125 PF04342 DUF486: Protein of un 64.4 64 0.0014 24.9 7.9 33 121-159 74-106 (108)
126 PRK06638 NADH:ubiquinone oxido 63.6 1E+02 0.0022 26.8 13.2 32 299-330 133-166 (198)
127 KOG1582 UDP-galactose transpor 60.1 58 0.0012 29.8 8.0 139 18-163 190-334 (367)
128 PF15048 OSTbeta: Organic solu 57.4 4.4 9.5E-05 32.0 0.6 27 304-330 26-56 (125)
129 COG1742 Uncharacterized conser 53.9 72 0.0016 24.5 6.5 41 116-162 65-105 (109)
130 TIGR02865 spore_II_E stage II 52.0 3.3E+02 0.0072 29.2 15.5 45 109-159 10-54 (764)
131 COG3169 Uncharacterized protei 49.9 30 0.00066 26.1 3.9 31 299-329 84-114 (116)
132 PF02694 UPF0060: Uncharacteri 48.6 1.2E+02 0.0027 23.3 8.6 52 104-161 51-103 (107)
133 PRK10666 ammonium transporter; 42.6 3.5E+02 0.0075 26.7 16.0 22 85-106 222-243 (428)
134 PRK02237 hypothetical protein; 40.5 1.7E+02 0.0038 22.6 9.7 47 109-161 58-105 (109)
135 PF15102 TMEM154: TMEM154 prot 38.0 49 0.0011 27.1 3.7 23 316-338 67-89 (146)
136 PF01102 Glycophorin_A: Glycop 37.6 14 0.00031 29.3 0.6 19 316-334 75-93 (122)
137 PF02487 CLN3: CLN3 protein; 37.1 4.1E+02 0.0089 26.0 12.0 40 116-161 67-108 (402)
138 TIGR00910 2A0307_GadC glutamat 35.8 4.7E+02 0.01 26.3 11.8 17 219-235 330-346 (507)
139 PF10754 DUF2569: Protein of u 33.7 1.9E+02 0.0041 23.8 6.8 32 185-216 115-146 (149)
140 COG0670 Integral membrane prot 33.5 3.5E+02 0.0077 24.2 19.5 112 78-216 84-196 (233)
141 COG2245 Predicted membrane pro 33.3 3E+02 0.0065 23.3 7.7 23 197-219 29-51 (182)
142 PF03348 Serinc: Serine incorp 33.2 4.9E+02 0.011 25.7 21.3 26 309-334 282-307 (429)
143 PF15345 TMEM51: Transmembrane 32.3 17 0.00037 32.1 0.3 24 315-338 66-89 (233)
144 PF10225 DUF2215: Uncharacteri 31.7 3.8E+02 0.0083 24.2 9.0 38 276-313 113-150 (249)
145 PRK03893 putative sialic acid 31.2 5.2E+02 0.011 25.4 13.1 6 44-49 51-56 (496)
146 PLN00028 nitrate transmembrane 30.5 3.2E+02 0.007 27.0 9.2 15 315-329 417-431 (476)
147 PHA03049 IMV membrane protein; 30.4 29 0.00064 24.0 1.2 22 314-335 6-27 (68)
148 PF15108 TMEM37: Voltage-depen 30.3 2E+02 0.0043 24.0 6.0 79 146-239 92-172 (184)
149 PF06570 DUF1129: Protein of u 30.3 3.7E+02 0.0079 23.4 10.7 14 146-159 89-102 (206)
150 PF09656 PGPGW: Putative trans 29.6 1.6E+02 0.0034 19.6 4.5 45 145-216 5-49 (53)
151 PF05961 Chordopox_A13L: Chord 29.4 33 0.00071 23.9 1.3 22 314-335 6-27 (68)
152 PF08693 SKG6: Transmembrane a 29.4 45 0.00098 20.8 1.8 19 316-334 21-39 (40)
153 PF07698 7TM-7TMR_HD: 7TM rece 28.1 3.7E+02 0.0081 22.8 17.3 32 209-241 120-151 (194)
154 TIGR00893 2A0114 d-galactonate 27.4 4.9E+02 0.011 23.9 13.2 15 204-218 43-57 (399)
155 COG3169 Uncharacterized protei 27.3 2.8E+02 0.0061 21.1 9.1 31 123-159 83-113 (116)
156 PRK10473 multidrug efflux syst 27.2 5.4E+02 0.012 24.3 21.7 16 120-135 167-182 (392)
157 PRK11902 ampG muropeptide tran 26.4 5.7E+02 0.012 24.3 11.1 17 312-328 370-386 (402)
158 COG3086 RseC Positive regulato 25.9 21 0.00046 29.1 -0.1 26 280-305 70-95 (150)
159 COG5336 Uncharacterized protei 25.7 1.1E+02 0.0024 23.7 3.6 31 293-323 54-85 (116)
160 KOG3618 Adenylyl cyclase [Gene 25.4 8.6E+02 0.019 26.1 10.8 39 15-55 80-118 (1318)
161 COG3965 Predicted Co/Zn/Cd cat 25.3 5.3E+02 0.011 23.6 12.1 109 18-133 96-211 (314)
162 PF09529 Intg_mem_TP0381: Inte 24.8 4.8E+02 0.01 22.9 13.1 60 94-162 52-112 (225)
163 PF04277 OAD_gamma: Oxaloaceta 24.6 44 0.00096 24.0 1.4 10 315-324 9-18 (79)
164 COG2323 Predicted membrane pro 24.6 4.1E+02 0.009 23.6 7.6 79 48-132 4-82 (224)
165 KOG4320 Uncharacterized conser 24.4 5.2E+02 0.011 23.2 9.3 50 185-234 115-164 (253)
166 PF06084 Cytomega_TRL10: Cytom 24.3 1.5E+02 0.0033 23.0 4.1 25 311-335 61-85 (150)
167 COG1968 BacA Undecaprenyl pyro 24.2 5.6E+02 0.012 23.5 17.4 93 17-113 84-176 (270)
168 PF12292 DUF3624: Protein of u 23.7 2.6E+02 0.0057 20.2 5.0 48 20-68 23-70 (77)
169 KOG1623 Multitransmembrane pro 23.5 5.5E+02 0.012 23.2 8.4 46 283-328 154-204 (243)
170 CHL00196 psbY photosystem II p 23.5 1.1E+02 0.0024 18.6 2.6 20 191-210 6-25 (36)
171 PF15471 TMEM171: Transmembran 23.1 72 0.0016 28.9 2.6 21 312-332 161-181 (319)
172 PRK10649 hypothetical protein; 23.0 8.5E+02 0.018 25.1 12.1 40 28-69 23-64 (577)
173 COG0004 AmtB Ammonia permease 22.5 7.4E+02 0.016 24.3 12.4 30 76-106 191-220 (409)
174 COG4858 Uncharacterized membra 22.3 5.1E+02 0.011 22.3 10.4 113 19-138 101-219 (226)
175 KOG1289 Amino acid transporter 22.2 4.5E+02 0.0098 26.8 8.1 18 220-237 391-408 (550)
176 MTH00057 ND6 NADH dehydrogenas 22.1 5.1E+02 0.011 22.2 12.1 32 299-330 132-165 (186)
177 PRK12405 electron transport co 21.1 5.3E+02 0.012 23.0 7.6 46 188-237 38-83 (231)
178 PF11085 YqhR: Conserved membr 20.8 5.2E+02 0.011 21.9 9.5 83 190-290 21-103 (173)
179 TIGR00881 2A0104 phosphoglycer 20.8 6.6E+02 0.014 23.0 12.3 18 201-218 41-58 (379)
180 PF09586 YfhO: Bacterial membr 20.5 1.1E+03 0.023 25.4 12.3 15 53-67 339-353 (843)
181 PF04145 Ctr: Ctr copper trans 20.1 55 0.0012 26.4 1.2 16 311-326 23-38 (144)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=4.3e-37 Score=291.19 Aligned_cols=318 Identities=31% Similarity=0.548 Sum_probs=251.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCCCHHHHHHHHHHHHh
Q 016580 13 ALSKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLER-KIRPKLTLPVFLRIMALGFL 91 (387)
Q Consensus 13 ~~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 91 (387)
..|+.++++.+++..+.++...++.|.+++.+++|+.+.++|+.++.++++++.++++| +.+++.+++++..+.+.|++
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~ 87 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFL 87 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence 45678999999999999999999999999899999999999999999999999877654 33444567888889999999
Q ss_pred HHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHh------ccccceeeccccchhhHHHHHhhhhhhhhhccCc
Q 016580 92 EPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFR------LETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGP 165 (387)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l------~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~ 165 (387)
+ ..++.+++.|++|+++++++++.++.|+++.+++++++ |||++++ |++|++++++|+.++...+++
T Consensus 88 g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~ 160 (358)
T PLN00411 88 G-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGP 160 (358)
T ss_pred H-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCc
Confidence 8 78888999999999999999999999999999999994 6666666 799999999999998754442
Q ss_pred cccccC--CCCCCCCCCC-CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh
Q 016580 166 IINFTS--GGAGSHHGSS-VDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIM 242 (387)
Q Consensus 166 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 242 (387)
.....+ ...|..+... ......+...|++++++++++||+|++.+|+..++++++...++++..++.+...+.....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~ 240 (358)
T PLN00411 161 RVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVV 240 (358)
T ss_pred ccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHH
Confidence 110000 0000000000 0111223456999999999999999999999999987666777788888877777666655
Q ss_pred ccC-cccccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHH
Q 016580 243 ERD-MSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILI 321 (387)
Q Consensus 243 ~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li 321 (387)
+.. ...|..........++|.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LI 319 (358)
T PLN00411 241 EKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILI 319 (358)
T ss_pred ccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 432 222322222234557777875 678999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhheeeccCCCCCC
Q 016580 322 VFGLYTVVWGKSKDPPS 338 (387)
Q Consensus 322 ~~g~~l~~~~~~~~~~~ 338 (387)
+.|+.+..+.++++.+.
T Consensus 320 l~Gv~l~~~~~~~~~~~ 336 (358)
T PLN00411 320 TLGFYAVMWGKANEEKD 336 (358)
T ss_pred HHHHHHHHhhhhhhhhh
Confidence 99999988766554333
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=249.78 Aligned_cols=280 Identities=19% Similarity=0.191 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 016580 19 PYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQN 98 (387)
Q Consensus 19 ~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 98 (387)
-.+..++..++||.+++..|... ++++|..++++|+.++.++++++...+++ + ..+++++......|.+....++.
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~-~--~~~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRGH-P--LPTLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhCC-C--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999985 79999999999999999999888754322 2 22467788888888887678889
Q ss_pred HHHHhh-hccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCC
Q 016580 99 LYYLGM-KYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSH 177 (387)
Q Consensus 99 ~~~~al-~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~ 177 (387)
+++.+. ++++++.++++.++.|+++.+++.+ +|||++++ +++|++++++|++++...+
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~~-------------- 143 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSGG-------------- 143 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcCc--------------
Confidence 999999 9999999999999999999999985 69999999 5999999999999875221
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhH
Q 016580 178 HGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRL 257 (387)
Q Consensus 178 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 257 (387)
..+....|++++++++++||.|.+..|+..++ + +.....+++..+.+.+.+.....+..... ..+...|
T Consensus 144 -------~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 212 (292)
T PRK11272 144 -------NLSGNPWGAILILIASASWAFGSVWSSRLPLP-V-GMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGF 212 (292)
T ss_pred -------ccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-c-chHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHH
Confidence 11234579999999999999999999987543 3 45567788888888877766543322111 1233578
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCC
Q 016580 258 LAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSK 334 (387)
Q Consensus 258 ~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~ 334 (387)
..+++.+++++.+++.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++++.|+++.++.+++
T Consensus 213 ~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 213 LALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998765543
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=3.5e-31 Score=247.55 Aligned_cols=279 Identities=19% Similarity=0.257 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHH
Q 016580 20 YLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNL 99 (387)
Q Consensus 20 ~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (387)
.++.++++++||.++++.|..+ ++++|..+.++|+.++++.++++.. ++ +.+++ .....|++....+..+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~~~---~~---~~~~~---~~~~~g~~~~~~~~~~ 75 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFFVA---RP---KVPLN---LLLGYGLTISFGQFAF 75 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhc---CC---CCchH---HHHHHHHHHHHHHHHH
Confidence 4568899999999999999996 7899999999999998877665541 11 11222 2344456554566678
Q ss_pred HHHhhhc-cCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCCC
Q 016580 100 YYLGMKY-TTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHH 178 (387)
Q Consensus 100 ~~~al~~-~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~ 178 (387)
++.++++ .+++.++++.++.|+++.+++++++|||++.+ ++++++++++|+.++...+.
T Consensus 76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~~~~-------------- 135 (299)
T PRK11453 76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIEDSL-------------- 135 (299)
T ss_pred HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhccccC--------------
Confidence 8899998 58899999999999999999999999999999 59999999999998863210
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHHHHHHHHhccCc---ccccccc
Q 016580 179 GSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAE--LSLSTLICLMGVVEGAAVSLIMERDM---SAWKIGF 253 (387)
Q Consensus 179 ~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~ 253 (387)
........|+++++.++++|+.|.++.|+..++.+.+ .....+....+.+.........+... ..+...+
T Consensus 136 -----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (299)
T PRK11453 136 -----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTID 210 (299)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCC
Confidence 1112235799999999999999999999987665432 23344444454444433333333211 1111223
Q ss_pred hhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccC
Q 016580 254 DSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKS 333 (387)
Q Consensus 254 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 333 (387)
...|..+++.++++++++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|++|+++..+.++
T Consensus 211 ~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 211 MTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999998876654
No 4
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=8.1e-31 Score=244.28 Aligned_cols=282 Identities=12% Similarity=0.106 Sum_probs=225.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHH
Q 016580 14 LSKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEP 93 (387)
Q Consensus 14 ~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 93 (387)
.++.+++.++++++++|+.++.+.|+.+ ++++|..+.++|+.++.++++++... ++ .+.++++++..+..|.+.
T Consensus 8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~-~~~~~~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~~~g~~~- 81 (293)
T PRK10532 8 LPVWLPILLLLIAMASIQSGASLAKSLF-PLVGAPGVTALRLALGTLILIAIFKP--WR--LRFAKEQRLPLLFYGVSL- 81 (293)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHhH--Hh--ccCCHHHHHHHHHHHHHH-
Confidence 4557899999999999999999999996 67999999999999999998876532 11 123567777788888876
Q ss_pred HHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCC
Q 016580 94 VLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGG 173 (387)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~ 173 (387)
+..+.+++++++++|++.++++..+.|+++.+++. |++. +..++.++++|++++...+.
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~~~~~--------- 140 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLLPLGQ--------- 140 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheeeecCC---------
Confidence 88889999999999999999999999999988763 4433 25567788999988752111
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccc
Q 016580 174 AGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGF 253 (387)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 253 (387)
...+.+..|+++.++++++||.|.+..|+..++++ +... .+...++++++.++....+. ...+ +
T Consensus 141 ----------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~---~ 204 (293)
T PRK10532 141 ----------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG-EALW---H 204 (293)
T ss_pred ----------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC-cccC---C
Confidence 11223457999999999999999999999887765 5554 45666677677766644322 1111 2
Q ss_pred hhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccC
Q 016580 254 DSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKS 333 (387)
Q Consensus 254 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 333 (387)
...|..+++++++++.++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|++|++...+..+
T Consensus 205 ~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~ 284 (293)
T PRK10532 205 WSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIR 284 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 23566678999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred CCCCC
Q 016580 334 KDPPS 338 (387)
Q Consensus 334 ~~~~~ 338 (387)
++.|-
T Consensus 285 ~~~~~ 289 (293)
T PRK10532 285 REPKI 289 (293)
T ss_pred CCCCC
Confidence 54333
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=4e-31 Score=246.56 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=215.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHH
Q 016580 16 KFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVL 95 (387)
Q Consensus 16 ~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 95 (387)
+.++++++++++++||.+++..|..+ ++++|..+.++|+.++.++++++. +++++++ ..++....+.+....
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~----~~~~~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLTV---GFPRLRQ----FPKRYLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHHc---ccccccc----ccHHHHHHHhHHHHH
Confidence 34678899999999999999999995 889999999999999999988763 1211111 122234455555577
Q ss_pred HHHHHHHhhhc----cCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccC
Q 016580 96 DQNLYYLGMKY----TTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTS 171 (387)
Q Consensus 96 ~~~~~~~al~~----~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~ 171 (387)
++.+++.++++ .++++++++.++.|+++.+++++++|||++++ |++|++++++|+.++...+...
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~~~~~----- 142 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGGDNGL----- 142 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecCCccc-----
Confidence 88888887764 57788899999999999999999999999999 5999999999999986322100
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccc
Q 016580 172 GGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKI 251 (387)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (387)
+.+ +. .........|++++++|+++||.|+++.|+..++++ +.... ...+.+.+.+.....+.. ....
T Consensus 143 ---~~~--~~-~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~--~~~~ 210 (295)
T PRK11689 143 ---SLA--EL-INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLF---FILTALALWIKYFLSPQP--AMVF 210 (295)
T ss_pred ---hhh--hh-hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHH---HHHHHHHHHHHHHHhcCc--cccC
Confidence 000 00 001112356999999999999999999999876654 45432 223333333333322211 1112
Q ss_pred cchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeec
Q 016580 252 GFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWG 331 (387)
Q Consensus 252 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 331 (387)
+...|..+++.++ +++++|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|+.|+++..+.
T Consensus 211 -~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 211 -SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred -CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 2346777778775 68999999999999999999999999999999999999999999999999999999999887655
Q ss_pred cC
Q 016580 332 KS 333 (387)
Q Consensus 332 ~~ 333 (387)
++
T Consensus 289 ~~ 290 (295)
T PRK11689 289 TR 290 (295)
T ss_pred Hh
Confidence 43
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.97 E-value=2.2e-30 Score=241.74 Aligned_cols=281 Identities=13% Similarity=0.047 Sum_probs=209.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCCHHHHHHHHHHH
Q 016580 13 ALSKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIR---PKLTLPVFLRIMALG 89 (387)
Q Consensus 13 ~~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g 89 (387)
++++.+|++++++++++||.++++.|.. ++++|.++.++|..++.++++++...+++... ...+++.+. ....+
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~--~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI--YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVS 79 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHH
Confidence 3466789999999999999999999986 57999999999999999888877654322110 011233333 34466
Q ss_pred HhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccc
Q 016580 90 FLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINF 169 (387)
Q Consensus 90 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~ 169 (387)
.+..+.++.++++|++++++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++...++
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~----- 148 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG----- 148 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC-----
Confidence 6666889999999999999999999999999999999999999999999 59999999999999852211
Q ss_pred cCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHhccCccc
Q 016580 170 TSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYP-AELSLSTLICLMGVVEGAAVSLIMERDMSA 248 (387)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 248 (387)
+. ..+.++++++||.|.+..|+..++.. .......+....+.....+.. ......
T Consensus 149 -----------------~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 204 (296)
T PRK15430 149 -----------------SL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSH 204 (296)
T ss_pred -----------------Cc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCccc
Confidence 00 14678899999999999888643211 112223333333333322111 111111
Q ss_pred ccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhe
Q 016580 249 WKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTV 328 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~ 328 (387)
+...+...+..++..++ .+.+++.++++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|+.|+.+.
T Consensus 205 ~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~ 283 (296)
T PRK15430 205 MGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF 283 (296)
T ss_pred ccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 11112222334444555 58899999999999999999999999999999999999999999999999999999988777
Q ss_pred eecc
Q 016580 329 VWGK 332 (387)
Q Consensus 329 ~~~~ 332 (387)
..+.
T Consensus 284 ~~~~ 287 (296)
T PRK15430 284 VMDA 287 (296)
T ss_pred HHHH
Confidence 6443
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.97 E-value=6.1e-30 Score=234.70 Aligned_cols=259 Identities=19% Similarity=0.239 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhhccCc
Q 016580 30 YAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNLYYLGMKYTTA 109 (387)
Q Consensus 30 ~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~ 109 (387)
||.+++..|..++++.++....+.|..++.+++.++...+ .+++++.+.+..|.++..+++.++++|++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 8999999999976678999999999999988887765432 235667778888888889999999999999999
Q ss_pred hhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCch
Q 016580 110 TFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSSVDSSDSHF 189 (387)
Q Consensus 110 ~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (387)
++++++.++.|+++.+++.+++|||++++ |++|+.++++|++++.. ++ ..+.+
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~--------------------~~~~~ 126 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG--------------------NLSIN 126 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC--------------------ccccc
Confidence 99999999999999999999999999999 59999999999999852 21 11345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhh
Q 016580 190 FTGTLMLIGSCFGWAGFFILQSFTLKKYPA-ELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCS 268 (387)
Q Consensus 190 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 268 (387)
..|+.++++++++|+.+.++.|+..++.+. +.....+.+..+.+.+.+.....+... .+ +...|..+++.+++++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~ 202 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGT 202 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHH
Confidence 689999999999999999999998877552 234444678888888888766543321 11 3347778899999889
Q ss_pred hHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhh
Q 016580 269 GIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLY 326 (387)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~ 326 (387)
.+++.++++++++.++.+++.+.+++|+++.++++++++|++++.+++|+++++.|++
T Consensus 203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999863
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=7.4e-29 Score=232.37 Aligned_cols=284 Identities=10% Similarity=0.074 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 016580 22 AIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNLYY 101 (387)
Q Consensus 22 ~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 101 (387)
+.++.-++-....+..|+.+++...|..+++.|+.++.+...+.. ....+++++.++++++..+..|++. ++++.+.+
T Consensus 6 ~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~ 83 (302)
T TIGR00817 6 LFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSW-SSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSN 83 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Confidence 344444555555678899974347799999999999887765552 1122334456788999999999997 89999999
Q ss_pred HhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCCCCCC
Q 016580 102 LGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSS 181 (387)
Q Consensus 102 ~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (387)
++++|++++.++++.++.|+++.+++++++|||++++ ++.+++++++|+.+... +
T Consensus 84 ~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~~-~------------------ 138 (302)
T TIGR00817 84 VSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALASD-T------------------ 138 (302)
T ss_pred HHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhcC-C------------------
Confidence 9999999999999999999999999999999999999 59999999999987531 1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHHHHHHHHHhccCcc---cccc-----
Q 016580 182 VDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLK--KYPAELSLSTLICLMGVVEGAAVSLIMERDMS---AWKI----- 251 (387)
Q Consensus 182 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~----- 251 (387)
..+....|+++.++++++|++|.++.|+..+ +++ +...+.+++..+.+.++|.....+.... .+..
T Consensus 139 ---~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~ 214 (302)
T TIGR00817 139 ---ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGV 214 (302)
T ss_pred ---cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhccc
Confidence 1123467999999999999999999999887 555 7899999999999999998765543111 0100
Q ss_pred cchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeec
Q 016580 252 GFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWG 331 (387)
Q Consensus 252 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 331 (387)
.....+...+..+..+....+.+++.++++.+|++.+++.+++|+++++++++++||+++..+++|+++++.|++++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 215 NVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 00111221223333223333346668999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCC
Q 016580 332 KSKDP 336 (387)
Q Consensus 332 ~~~~~ 336 (387)
|++++
T Consensus 295 k~~~~ 299 (302)
T TIGR00817 295 KAQKP 299 (302)
T ss_pred hccCc
Confidence 54433
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.96 E-value=7.1e-27 Score=216.59 Aligned_cols=274 Identities=15% Similarity=0.131 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 016580 20 YLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLE-RKIRPKLTLPVFLRIMALGFLEPVLDQN 98 (387)
Q Consensus 20 ~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 98 (387)
.++.++++++|+..++..|... ++-++. .+++...+.++++++...+. +..++..+++ ++...+.+.+....++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHA-DKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPAT-FWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchh-hHHHHHHHHHHHHHHHH
Confidence 5678999999999999999663 443443 47777777878888776532 2333433334 44444555555589999
Q ss_pred HHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCCC
Q 016580 99 LYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHH 178 (387)
Q Consensus 99 ~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~ 178 (387)
++++|+++.+++.++++.++.|+++.+++++++||+++.+ +++|+.++++|+.++...+
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~~--------------- 137 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLSR--------------- 137 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhccc---------------
Confidence 9999999999999999999999999999999999999999 5999999999999886321
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchH---HHHHHHHHHHHHHHHHHHHhccCcccccccchh
Q 016580 179 GSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELS---LSTLICLMGVVEGAAVSLIMERDMSAWKIGFDS 255 (387)
Q Consensus 179 ~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 255 (387)
....+..|+.+.++++++|+.|.+..|+..++.++... ...+......+...+.....+. ..+.. ...
T Consensus 138 ------~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~ 208 (281)
T TIGR03340 138 ------FAQHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHG--RSMFP-YAR 208 (281)
T ss_pred ------ccccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhc--cchhh-hHH
Confidence 11123468889999999999999998876544332111 2222222221111121111111 11111 223
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhh
Q 016580 256 RLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYT 327 (387)
Q Consensus 256 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l 327 (387)
.++..++.+.+++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|++++++|+.+
T Consensus 209 ~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 209 QILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 455667778778999999999999999999999999999999999999999999999999999999999875
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=3.2e-26 Score=212.62 Aligned_cols=302 Identities=16% Similarity=0.167 Sum_probs=238.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCHHHHHHHHHHHHh
Q 016580 14 LSKFKPYLAIISLQFGYAGMYIITMVSLKHGMS-HYVLAVYRHVVATIVLAPFAFVLERK-IRPKLTLPVFLRIMALGFL 91 (387)
Q Consensus 14 ~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 91 (387)
++.++..++.=+.+++-..+.+.+...-+++.+ |....++.++.-.++..++..+++++ ++.+..+++|++.++.+++
T Consensus 9 ~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~ 88 (334)
T PF06027_consen 9 RRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALL 88 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHH
Confidence 445566666666777777777777777445555 88888888888888877776665432 2333345677888888988
Q ss_pred HHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccC
Q 016580 92 EPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTS 171 (387)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~ 171 (387)
. ..++.+.+.|++|++.+.++++.++..+++++++++++|+|+++. |++|++++++|+.++...+...
T Consensus 89 D-v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~----- 156 (334)
T PF06027_consen 89 D-VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLS----- 156 (334)
T ss_pred H-HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccc-----
Confidence 8 899999999999999999999999999999999999999999999 6999999999999987654321
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccC-ccccc
Q 016580 172 GGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERD-MSAWK 250 (387)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 250 (387)
+.+....++...|++++++|++.||+++++.++..++.+ ......+..+++.++..+...+.|.+ ....+
T Consensus 157 --------~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~ 227 (334)
T PF06027_consen 157 --------GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIH 227 (334)
T ss_pred --------cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccC
Confidence 111234566789999999999999999999999999876 68888899999999998888777653 22222
Q ss_pred ccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheee
Q 016580 251 IGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVW 330 (387)
Q Consensus 251 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~ 330 (387)
+.+. .+..++.- .++.++-|.+....++..+|+...+-..+..+++++++++++|+++++..++|.++|++|.+++..
T Consensus 228 w~~~-~~~~~v~~-~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 228 WTSQ-VIGLLVGY-ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNL 305 (334)
T ss_pred CChh-hHHHHHHH-HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEc
Confidence 2222 22222222 334677788888999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCC
Q 016580 331 GKSKDPPS 338 (387)
Q Consensus 331 ~~~~~~~~ 338 (387)
.+.+..++
T Consensus 306 ~~~~~~~~ 313 (334)
T PF06027_consen 306 AESPEEEA 313 (334)
T ss_pred cCCccccc
Confidence 76654433
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.95 E-value=5.3e-26 Score=216.34 Aligned_cols=284 Identities=14% Similarity=0.145 Sum_probs=223.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--CHHHHHHHHHHHHhH
Q 016580 16 KFKPYLAIISLQFGYAGMYIITMVSLKHGMS-HYVLAVYRHVVATIVLAPFAFVLERKIRPKL--TLPVFLRIMALGFLE 92 (387)
Q Consensus 16 ~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 92 (387)
+.+..++.+..-.+-.......|.++ +.++ |..++.+|++++.++..++... +.+++++. .+++++..+..|+++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl-~~~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLAL-NMLPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 55666777777777777888899997 6789 9999999999998876555332 22222333 245778888999998
Q ss_pred HHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCC
Q 016580 93 PVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSG 172 (387)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~ 172 (387)
...+...+.|+++++++.++++..+.|+++++++++++|||++++ ++.+++++++|+++.+..
T Consensus 125 -~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~~---------- 187 (350)
T PTZ00343 125 -LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASVK---------- 187 (350)
T ss_pred -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheecc----------
Confidence 445666789999999999999999999999999999999999999 599999999999998631
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC------CchHHHHHHHHHHHHHHHHHHHHhccCc
Q 016580 173 GAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYP------AELSLSTLICLMGVVEGAAVSLIMERDM 246 (387)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 246 (387)
..+.+..|++++++|+++|++|+++.|+..++.+ ++.....++...+.++++|+....+...
T Consensus 188 ------------~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~ 255 (350)
T PTZ00343 188 ------------ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKK 255 (350)
T ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 1133577999999999999999999999887542 2445566668899999999876554311
Q ss_pred --cccc----ccchhhHHHHHHhhhhhhhHHHHHHHH----HHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhh
Q 016580 247 --SAWK----IGFDSRLLAAAYSGVVCSGIAYYVQGF----VSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSIL 316 (387)
Q Consensus 247 --~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~----a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~ 316 (387)
..+. ......+..+++. ++.+++++++++. ++++++|.+.++..+++|+++++++++++||++|+.+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~i 334 (350)
T PTZ00343 256 WVPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYL 334 (350)
T ss_pred HHHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHH
Confidence 1110 0011122334443 4457888888885 999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhheeec
Q 016580 317 GAILIVFGLYTVVWG 331 (387)
Q Consensus 317 G~~li~~g~~l~~~~ 331 (387)
|+++++.|++++++.
T Consensus 335 G~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 335 GMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998764
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.94 E-value=3.4e-25 Score=202.67 Aligned_cols=248 Identities=12% Similarity=0.072 Sum_probs=184.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCCCHHH-HHHHHHHHHh
Q 016580 18 KPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERK-----IRPKLTLPV-FLRIMALGFL 91 (387)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-----~~~~~~~~~-~~~~~~~g~~ 91 (387)
+|++++++++++||.++++.|.. .+++|.+++++|++++.++++++...++++ ..++.++++ +......|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~--~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL--KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 58999999999999999999995 469999999999999998887776443321 111112232 3345666666
Q ss_pred HHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccC
Q 016580 92 EPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTS 171 (387)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~ 171 (387)
. +.++.++++|++++++++++++.++.|+++++++++++|||++++ ++++++++++|+.++...++
T Consensus 80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~------- 145 (256)
T TIGR00688 80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG------- 145 (256)
T ss_pred H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC-------
Confidence 5 899999999999999999999999999999999999999999999 59999999999998853211
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccc
Q 016580 172 GGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKI 251 (387)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (387)
+.. .++++++++|+.|.+..|+..++ + ..... ...........+.....+. ......
T Consensus 146 ---------------~~~----~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 202 (256)
T TIGR00688 146 ---------------SLP----WEALVLAFSFTAYGLIRKALKNT-D-LAGFC-LETLSLMPVAIYYLLQTDF-ATVQQT 202 (256)
T ss_pred ---------------Cch----HHHHHHHHHHHHHHHHHhhcCCC-C-cchHH-HHHHHHHHHHHHHHHHhcc-Cccccc
Confidence 011 35788999999999999986543 3 22211 1111222222211111111 111111
Q ss_pred cchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHH
Q 016580 252 GFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVII 305 (387)
Q Consensus 252 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~ 305 (387)
.+...|..+++.|++ +.++|.++++++++.++++++++.+++|+++.+++.++
T Consensus 203 ~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 203 NPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred CchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 122478888888886 88999999999999999999999999999999999764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.93 E-value=4.7e-23 Score=191.60 Aligned_cols=282 Identities=23% Similarity=0.349 Sum_probs=217.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHH
Q 016580 15 SKFKPYLAIISLQFGYAGMYIITMVSLKHG-MSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEP 93 (387)
Q Consensus 15 ~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~-~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 93 (387)
+...+....++.++.|+......|... ++ .++....+.|...+.++..+.........++. .+.+++....+.+..
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 80 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAV-ESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPA--LRPWLLLLLLALLGL 80 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCChHHHHHHHHHHHHHHHHHHHHhhccccccc--ccchHHHHHHHHHHH
Confidence 345678888888899999999999995 55 67777777799999888443432211111121 122455666677777
Q ss_pred HHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHH-HHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCC
Q 016580 94 VLDQNLYYLGMKYTTATFASATVNILPAVTFILAI-IFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSG 172 (387)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~-~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~ 172 (387)
..++.+++.++++++++.++++.++.|+++.++++ +++|||++++ ++.++.++++|++++...++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~~------ 148 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGGG------ 148 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCcc------
Confidence 99999999999999999999999999999999997 7779999999 5999999999999997433211
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHH-HHHHHHHHHHHHHHHHhccCcccccc
Q 016580 173 GAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLST-LICLMGVVEGAAVSLIMERDMSAWKI 251 (387)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (387)
... ...|+.+.+.++++|+.+.+..|+.. +.+ +..... ++.........+.. ..... ..
T Consensus 149 ------------~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~ 208 (292)
T COG0697 149 ------------GIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLLLALLLLLLFF--LSGFG---AP 208 (292)
T ss_pred ------------hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHH--hcccc---cc
Confidence 111 67899999999999999999999987 433 445444 33331121112211 11111 11
Q ss_pred cchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeec
Q 016580 252 GFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWG 331 (387)
Q Consensus 252 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 331 (387)
.....|..+.+.+++++++++.++++++++.++..++.+.+++|+++.++++++++|+++..+++|+++++.|+.+...+
T Consensus 209 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 209 ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 23357888999999888899999999999999999999999999999999999999999999999999999999988766
No 14
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.92 E-value=8.3e-23 Score=175.89 Aligned_cols=277 Identities=17% Similarity=0.126 Sum_probs=230.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHH
Q 016580 18 KPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQ 97 (387)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 97 (387)
.+++.++.+.+.--....+.|..+ +..+|...+.+|..+++++++++..-. +.+..++++......|+.. +..|
T Consensus 12 ~p~~~ll~amvsiq~Gas~Ak~LF-P~vG~~g~t~lRl~~aaLIll~l~RPw----r~r~~~~~~~~~~~yGvsL-g~MN 85 (292)
T COG5006 12 LPILALLVAMVSIQSGASFAKSLF-PLVGAAGVTALRLAIAALILLALFRPW----RRRLSKPQRLALLAYGVSL-GGMN 85 (292)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHc-cccChhhHHHHHHHHHHHHHHHHhhHH----HhccChhhhHHHHHHHHHH-HHHH
Confidence 378888999999999999999997 889999999999999999998886432 2345678899999999998 8999
Q ss_pred HHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCC
Q 016580 98 NLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSH 177 (387)
Q Consensus 98 ~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~ 177 (387)
.+||.+++..|.+.+..+.++.|+.+++++- |+ .++ .+.+.+++.|+.++.- .+
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~s---Rr---~~d------~vwvaLAvlGi~lL~p-~~------------- 139 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLSS---RR---LRD------FVWVALAVLGIWLLLP-LG------------- 139 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHhc---cc---hhh------HHHHHHHHHHHHhhee-cc-------------
Confidence 9999999999999999999999998877653 22 122 5667788999988852 22
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhH
Q 016580 178 HGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRL 257 (387)
Q Consensus 178 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 257 (387)
.+....+..|..+++.++.+|+.|.+..+|..+..+ ..+....-+.++.++.+|+...... +..+ .+...
T Consensus 140 -----~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag-~~l~---~p~ll 209 (292)
T COG5006 140 -----QSVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG-PALF---SPSLL 209 (292)
T ss_pred -----CCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc-hhhc---ChHHH
Confidence 134567789999999999999999999999886544 4677888899999999998864322 1112 22356
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCCC
Q 016580 258 LAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKDP 336 (387)
Q Consensus 258 ~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~ 336 (387)
..-+.++++++.+.|.+-..++++.++..-+.+..++|.++.+.|++++||.+|+.||+|++.|+.+..-.++..+|+.
T Consensus 210 ~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 210 PLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 6777889999999999999999999999999999999999999999999999999999999999999887776655543
No 15
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.89 E-value=2e-21 Score=172.07 Aligned_cols=281 Identities=15% Similarity=0.100 Sum_probs=225.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcC--CC-CCCHHHHHHHHHHHHh
Q 016580 15 SKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKI--RP-KLTLPVFLRIMALGFL 91 (387)
Q Consensus 15 ~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~--~~-~~~~~~~~~~~~~g~~ 91 (387)
+..+|+++.+.+.++||..+...|.. +..++.++...|.+.+..+++.+....++.+ +. ..+++.+....+.+.+
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 34589999999999999999999999 6899999999999999999988766654322 11 2245666766777777
Q ss_pred HHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccC
Q 016580 92 EPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTS 171 (387)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~ 171 (387)
. ..++..|.+|.++...-+++.=++..|++..+++++|+|||+++. |++++.++.+||.......|
T Consensus 82 i-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g------- 147 (293)
T COG2962 82 I-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLG------- 147 (293)
T ss_pred H-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcC-------
Confidence 6 999999999999999999999999999999999999999999999 59999999999999875433
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccc
Q 016580 172 GGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKI 251 (387)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (387)
+-.+..+ .=+++|++|-.. ||..+- + +.+-.+.-...-.+..+.+.+..+...+....
T Consensus 148 ---------------~lpwval----~la~sf~~Ygl~-RK~~~v-~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~ 205 (293)
T COG2962 148 ---------------SLPWVAL----ALALSFGLYGLL-RKKLKV-D-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQ 205 (293)
T ss_pred ---------------CCcHHHH----HHHHHHHHHHHH-HHhcCC-c-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhc
Confidence 2233333 335889999876 443333 3 45555555555566665555555543321222
Q ss_pred cchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeec
Q 016580 252 GFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWG 331 (387)
Q Consensus 252 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 331 (387)
.+...+..++..|.+ +++...++..+-|+.+-+..+.++|.+|..-.+++.+++||+++..+++..++|.+|++++.++
T Consensus 206 ~~~~~~~LLv~aG~v-TavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 206 NANSLWLLLVLAGLV-TAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred CCchHHHHHHHhhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344578888888886 9999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCC
Q 016580 332 KSK 334 (387)
Q Consensus 332 ~~~ 334 (387)
..+
T Consensus 285 ~l~ 287 (293)
T COG2962 285 GLY 287 (293)
T ss_pred HHH
Confidence 543
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.88 E-value=7e-21 Score=176.70 Aligned_cols=274 Identities=17% Similarity=0.174 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 016580 19 PYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQN 98 (387)
Q Consensus 19 ~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 98 (387)
++++.++++++||+..+..|.. . ++++.++. |..++.+++..+....+.. . ...++.+...++.|++- ..++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~-~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~-~-~~~~~~~~~g~l~G~~w-~ig~~ 74 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKI-G-GGPYSQTL--GTTFGALILSIAIAIFVLP-E-FWALSIFLVGLLSGAFW-ALGQI 74 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhcc-C-CCHHHHHH--HHHHHHHHHHHHHHHHhCC-c-ccccHHHHHHHHHHHHH-Hhhhh
Confidence 5788999999999999999998 3 78887775 7777777776665443221 1 11245455555555554 89999
Q ss_pred HHHHhhhccCchhHHHhhc-hhHHHHHHHHHHHhccccceeeccccch----hhHHHHHhhhhhhhhhccCccccccCCC
Q 016580 99 LYYLGMKYTTATFASATVN-ILPAVTFILAIIFRLETVNVRRLQSLAK----VIGTAVTVAGAMVMTLYKGPIINFTSGG 173 (387)
Q Consensus 99 ~~~~al~~~~~~~~~~l~~-~~pi~~~~la~~~l~e~~~~~~~~~~~~----~~g~~~~~~Gv~l~~~~~~~~~~~~~~~ 173 (387)
+++.+.++++.+.+..+.+ +.+++..+++.+++||+.+.+ + ++|++++++|++++...++++
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~------- 141 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKS------- 141 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccc-------
Confidence 9999999999999998877 888999999999999999987 7 889999999999886432211
Q ss_pred CCCCCCCCCCCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH---HHHHHHHHHHHHHhccCcccc
Q 016580 174 AGSHHGSSVDSSD-SHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLIC---LMGVVEGAAVSLIMERDMSAW 249 (387)
Q Consensus 174 ~~~~~~~~~~~~~-~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~ 249 (387)
....+ .+..+|+++.+.++++|+.|.+..|.. +++ |....+.+. +.+.++..+.. . .. .++
T Consensus 142 --------~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~-~~-~~~ 206 (290)
T TIGR00776 142 --------AGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--I-LA-KPL 206 (290)
T ss_pred --------cccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH--h-cc-cch
Confidence 00000 234679999999999999999999975 244 666643333 33333333222 1 11 112
Q ss_pred cccchhhHHHHHHhhhhhhhHHHHHHHHHHh-cCCceeEeecchhHHHHHHHHHHHHhhcccchhhh----hhHHHHHhh
Q 016580 250 KIGFDSRLLAAAYSGVVCSGIAYYVQGFVSK-QKGPVFVTSFSPLCMIITSALGVIILAELVHLGSI----LGAILIVFG 324 (387)
Q Consensus 250 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~-~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~----~G~~li~~g 324 (387)
.+...|. .+..|++ ..+++.+|..+.+ +.+++..+.+.+.+|+.+.+++++++||+.++.++ +|+++++.|
T Consensus 207 --~~~~~~~-~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~ 282 (290)
T TIGR00776 207 --KKYAILL-NILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIA 282 (290)
T ss_pred --HHHHHHH-HHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHH
Confidence 1223343 4448887 7999999999999 99999999999999999999999999999999999 999999999
Q ss_pred hhheeec
Q 016580 325 LYTVVWG 331 (387)
Q Consensus 325 ~~l~~~~ 331 (387)
+++....
T Consensus 283 ~~l~~~~ 289 (290)
T TIGR00776 283 ANILGIG 289 (290)
T ss_pred HHHHhcc
Confidence 9886543
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.88 E-value=9.9e-24 Score=182.65 Aligned_cols=294 Identities=16% Similarity=0.105 Sum_probs=221.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHH
Q 016580 15 SKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPV 94 (387)
Q Consensus 15 ~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 94 (387)
+..+|.++..++-++-.++.+..|.. +.+|.+..-.|+++-+++-.|...+.+...+.+ .....+++++|+.+ .
T Consensus 35 ~p~~gl~l~~vs~ff~~~~vv~t~~~---e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp--~g~R~~LiLRg~mG-~ 108 (346)
T KOG4510|consen 35 KPNLGLLLLTVSYFFNSCMVVSTKVL---ENDPMELASFRLLVRMLITYPCLIYYMQPVIGP--EGKRKWLILRGFMG-F 108 (346)
T ss_pred CCccCceehhhHHHHhhHHHhhhhhh---ccChhHhhhhhhhhehhhhheEEEEEeeeeecC--CCcEEEEEeehhhh-h
Confidence 45567888888855444444444444 689999999998888887777665533322222 23335577888888 7
Q ss_pred HHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCC
Q 016580 95 LDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGA 174 (387)
Q Consensus 95 ~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~ 174 (387)
.+..+.|||++|.+.+++.++.+.+|++|.+++|+++||+.+..+ .++..+.+.||+++.... ..+++..
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIvRPp---FlFG~~t- 178 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIVRPP---FLFGDTT- 178 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEecCC---cccCCCc-
Confidence 888899999999999999999999999999999999999999996 999999999999997432 1111111
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccch
Q 016580 175 GSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFD 254 (387)
Q Consensus 175 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 254 (387)
++.+.+....+..|.+.++.++++-|-..++.|+..|+.+. .....|....+.+..++.....+. ..++. ..
T Consensus 179 ----~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~ig~--~~lP~-cg 250 (346)
T KOG4510|consen 179 ----EGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASIGA--VQLPH-CG 250 (346)
T ss_pred ----cccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhccc--eecCc-cc
Confidence 11111223455677888888888888888888998887663 334445555666655554443332 22332 33
Q ss_pred hhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccC
Q 016580 255 SRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKS 333 (387)
Q Consensus 255 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 333 (387)
.+|+..+.+|++ +++++++.+.++++..+..+++..+++.++++++++++|++.||+..|+|+++++.+.+.....|.
T Consensus 251 kdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 251 KDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred cceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 578888889996 999999999999999999999999999999999999999999999999999999999887765543
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.85 E-value=4.6e-19 Score=165.98 Aligned_cols=278 Identities=18% Similarity=0.142 Sum_probs=216.8
Q ss_pred HHHHHHhh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhhccCchh
Q 016580 35 IITMVSLK-HGMS--HYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNLYYLGMKYTTATF 111 (387)
Q Consensus 35 ~~~k~~~~-~~~~--p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 111 (387)
.+.+.... +... |..+++..+....++..+.....+++ +.++..++.....+++. .++..+-+.|++|.|.+.
T Consensus 17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~ 92 (303)
T PF08449_consen 17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP---KSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPT 92 (303)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc---CCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHH
Confidence 44444432 2334 88999999999888877766543312 22334455667777777 889999999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCchhh
Q 016580 112 ASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSSVDSSDSHFFT 191 (387)
Q Consensus 112 ~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (387)
..++.++.|+++++++.+++|+|++.. |+.++++..+|+++....+... ++...........
T Consensus 93 ~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~------------~~~~~~~~~~~~~ 154 (303)
T PF08449_consen 93 QIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSS------------SSSSNSSSFSSAL 154 (303)
T ss_pred HHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccc------------ccccccccccchh
Confidence 999999999999999999999999999 5999999999999997654322 1111122222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHH--hccCccccc--ccchhhHHHHHHhhhh
Q 016580 192 GTLMLIGSCFGWAGFFILQSFTLKKYP-AELSLSTLICLMGVVEGAAVSLI--MERDMSAWK--IGFDSRLLAAAYSGVV 266 (387)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~g~~ 266 (387)
|+++.+++.++.|...+++++..++++ ++...+++...++.+...+.... .+.....++ ...+..+..++...+
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~- 233 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL- 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-
Confidence 999999999999999999999998776 47899999999999988887766 222111111 112224444455555
Q ss_pred hhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCC
Q 016580 267 CSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKD 335 (387)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~ 335 (387)
++.++..+.+...++.++...+++..++.+++++++++++++++++.+|+|.++++.|..++.+.++|+
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 478888888899999999999999999999999999999999999999999999999999999887765
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.85 E-value=8.1e-20 Score=165.94 Aligned_cols=301 Identities=14% Similarity=0.151 Sum_probs=228.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHHHHHHHH----HHh---hhcCCC---------
Q 016580 14 LSKFKPYLAIISLQFGYAGMYIITMVSLKHGM--SHYVLAVYRHVVATIVLAPFA----FVL---ERKIRP--------- 75 (387)
Q Consensus 14 ~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~--~p~~~~~~r~~~~~l~l~~~~----~~~---~~~~~~--------- 75 (387)
+|...|+.++++..++|-.+.-+.+..+.++- .|+..++.....-.+-+.++. .++ +|.++.
T Consensus 10 ~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~d 89 (416)
T KOG2765|consen 10 WRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEAD 89 (416)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhhh
Confidence 45668999999999999999999999984432 488877665443333333322 111 110000
Q ss_pred --------------------------------------------------CC-CH------------HHHHHHHHHHHhH
Q 016580 76 --------------------------------------------------KL-TL------------PVFLRIMALGFLE 92 (387)
Q Consensus 76 --------------------------------------------------~~-~~------------~~~~~~~~~g~~~ 92 (387)
+. .+ +..+..+....+-
T Consensus 90 ~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~lW 169 (416)
T KOG2765|consen 90 AEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPLW 169 (416)
T ss_pred hhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 00 01 2233344444554
Q ss_pred HHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCC
Q 016580 93 PVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSG 172 (387)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~ 172 (387)
.++++.++.|+.+++++..+++.+++.+||.+++.++..||++.. |++++.+++.|++++...+...
T Consensus 170 -F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~------ 236 (416)
T KOG2765|consen 170 -FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQ------ 236 (416)
T ss_pred -HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccc------
Confidence 889999999999999999999999999999999999999999999 8999999999999997543211
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchH---HHHHHHHHHHHHHHHHHHHhcc-Cccc
Q 016580 173 GAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELS---LSTLICLMGVVEGAAVSLIMER-DMSA 248 (387)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~-~~~~ 248 (387)
.++.......+|+++++++++.||+|.++.||...+.+..+. ...+..++..++++|..++.+. ..+.
T Consensus 237 --------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~ 308 (416)
T KOG2765|consen 237 --------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEER 308 (416)
T ss_pred --------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence 122344566899999999999999999999998877632222 3334445556666665554433 2334
Q ss_pred ccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhe
Q 016580 249 WKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTV 328 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~ 328 (387)
++.+...+...++..+++.++++-++|.+|.-.++|..+++-+.++++.+++.+.++-+.++++.+++|...|++|.+++
T Consensus 309 F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~v 388 (416)
T KOG2765|consen 309 FELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIV 388 (416)
T ss_pred ccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhe
Confidence 55555556777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 016580 329 VWGKSKD 335 (387)
Q Consensus 329 ~~~~~~~ 335 (387)
++.....
T Consensus 389 n~~~~~~ 395 (416)
T KOG2765|consen 389 NISSENS 395 (416)
T ss_pred ecccccc
Confidence 8766543
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.77 E-value=1.9e-18 Score=158.79 Aligned_cols=292 Identities=13% Similarity=0.091 Sum_probs=229.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHH
Q 016580 16 KFKPYLAIISLQFGYAGMYIITMVSLK--HGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEP 93 (387)
Q Consensus 16 ~~~~~l~~l~~~~~~~~~~~~~k~~~~--~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 93 (387)
.....++....-++-.......|+.++ +.--|..++.++...+.+.++.....+..+..+..++..+...+.+|++.
T Consensus 15 ~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~- 93 (316)
T KOG1441|consen 15 ILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF- 93 (316)
T ss_pred hHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-
Confidence 334445555555666666677888875 33458899999777777777766555433333333456777888888888
Q ss_pred HHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCC
Q 016580 94 VLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGG 173 (387)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~ 173 (387)
.++..+-+.|+.+.+++.++.+..++|+++.++++++.+|+.+... +..++....|+.+.+..
T Consensus 94 ~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~~----------- 156 (316)
T KOG1441|consen 94 CISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASVT----------- 156 (316)
T ss_pred HHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeeec-----------
Confidence 9999999999999999999999999999999999999999999995 89999999999998742
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhc--cCC-CchHHHHHHHHHHHHHHH-HHHHHhccCcc--
Q 016580 174 AGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLK--KYP-AELSLSTLICLMGVVEGA-AVSLIMERDMS-- 247 (387)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~--~~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-- 247 (387)
..+.+..|...++++.+..++.+++.++..+ +.. ++..+..++..++.+.++ |+....+.+..
T Consensus 157 -----------e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~ 225 (316)
T KOG1441|consen 157 -----------ELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVG 225 (316)
T ss_pred -----------cccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceee
Confidence 3356789999999999999999999999995 322 579999999999999999 87765554332
Q ss_pred -cccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhh
Q 016580 248 -AWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLY 326 (387)
Q Consensus 248 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~ 326 (387)
.. ..+.......++..+ +...-+...+..+.+++|.+.++...+.-++.++.++++|+++.|+.+.+|.++.++|++
T Consensus 226 ~~~-~~~~~~~~~~~~~sv-~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~ 303 (316)
T KOG1441|consen 226 FLT-APWFVTFLILLLNSV-LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVF 303 (316)
T ss_pred eec-cccchhhHHHHHHHH-HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHH
Confidence 11 011112333333343 356666777888999999999999999999999999999999999999999999999999
Q ss_pred heeeccCCCCCC
Q 016580 327 TVVWGKSKDPPS 338 (387)
Q Consensus 327 l~~~~~~~~~~~ 338 (387)
+|.+.|.++++.
T Consensus 304 ~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 304 LYSRAKLKEKKG 315 (316)
T ss_pred HHHHHhhhhhcc
Confidence 999888765543
No 21
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.68 E-value=1.1e-16 Score=138.26 Aligned_cols=282 Identities=14% Similarity=0.138 Sum_probs=211.3
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHH
Q 016580 16 KFKPYLAIISLQFG-YAGMYIITMVSLKHGM-SHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEP 93 (387)
Q Consensus 16 ~~~~~l~~l~~~~~-~~~~~~~~k~~~~~~~-~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 93 (387)
-+++..+.=+-+++ -+..+..+..+ .+++ .|...+|..+..-+++-.+++.+++ +.-...|...++.+++.
T Consensus 16 ~li~~~LGQiLSL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-----~~~~~~~~hYilla~~D- 88 (336)
T KOG2766|consen 16 TLIGLGLGQILSLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALVYGPIMLFRR-----KYIKAKWRHYILLAFVD- 88 (336)
T ss_pred hhheeeHHHHHHHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHHHhhHHHhhh-----HHHHHHHHHhhheeEEe-
Confidence 34444443333333 33344444444 4544 4888999999999999999987743 12234555677788887
Q ss_pred HHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCC
Q 016580 94 VLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGG 173 (387)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~ 173 (387)
+-+|.+...|.+|++...+..+-.-..+.+.+++|+++|.|.++. |+.|+++|+.|+.++...
T Consensus 89 VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~s----------- 151 (336)
T KOG2766|consen 89 VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFS----------- 151 (336)
T ss_pred ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEe-----------
Confidence 888889999999999999999999999999999999999999999 699999999999999754
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhcc-Cccccccc
Q 016580 174 AGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMER-DMSAWKIG 252 (387)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~ 252 (387)
|.++ .++.+..+...|+++.++++-+||+.++....+.|+.+ ....+....++|+++..+-. +.+. +.....+.
T Consensus 152 -DV~a--gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ~-i~~~~~~~tl~w~ 226 (336)
T KOG2766|consen 152 -DVHA--GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQF-IFERHHVSTLHWD 226 (336)
T ss_pred -eecc--ccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH-hhhccceeeEeeh
Confidence 2332 23445567789999999999999999999999999876 68889999999999988874 4443 22222221
Q ss_pred chhhHHHHHHh-hhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeec
Q 016580 253 FDSRLLAAAYS-GVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWG 331 (387)
Q Consensus 253 ~~~~~~~~~~~-g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 331 (387)
|....++ ..++.++-|.+.-..+|..+++...+-..+.-.+++++ -.||=+.+|...+..+.+..|.+++..+
T Consensus 227 ----~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 227 ----SAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 2222222 22335555666666788889998888888899999888 6678889999999999999999998543
Q ss_pred c
Q 016580 332 K 332 (387)
Q Consensus 332 ~ 332 (387)
+
T Consensus 301 e 301 (336)
T KOG2766|consen 301 E 301 (336)
T ss_pred c
Confidence 3
No 22
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.4e-13 Score=125.86 Aligned_cols=299 Identities=14% Similarity=0.149 Sum_probs=210.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHHHHHHHHHHhhhc----CCCC------CCHHHHHH
Q 016580 18 KPYLAIISLQFGYAGMYIITMVSLKHG---MSHYVLAVYRHVVATIVLAPFAFVLERK----IRPK------LTLPVFLR 84 (387)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~k~~~~~~---~~p~~~~~~r~~~~~l~l~~~~~~~~~~----~~~~------~~~~~~~~ 84 (387)
.-++.+++.++.++......|+.-..+ +.|...+++--++-.++....++...|+ ..+. ..+++..+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 667778888899999999999984334 6688888877777766666665554322 1111 23455666
Q ss_pred HHHHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccC
Q 016580 85 IMALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKG 164 (387)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~ 164 (387)
..+-+++. .++|.++|.++.+.+++..++..++..+.|+++.++++++|++++ ||.++++.++|+.++.....
T Consensus 95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCC
Confidence 67777776 898899999999999999999999999999999999999999999 59999999999999963222
Q ss_pred ccccccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH-hc
Q 016580 165 PIINFTSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLI-ME 243 (387)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 243 (387)
+.. ...+.........|....+.+++.-++..++.++.+|+-+.+..+.-.++-.-++++.....+ .+
T Consensus 168 ~~~-----------~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d 236 (345)
T KOG2234|consen 168 SPT-----------GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQD 236 (345)
T ss_pred CCC-----------CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 110 000123456678999999999999999999999999885555555555554444444444433 22
Q ss_pred cCcccccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHh
Q 016580 244 RDMSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVF 323 (387)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~ 323 (387)
.+...|..-. .+|-...+.-++..+++=++....+|+.+-..=.....+..+++.+.++.+++-+||....+|..+++.
T Consensus 237 ~~~i~~~gff-~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~ 315 (345)
T KOG2234|consen 237 GEAINEYGFF-YGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVIL 315 (345)
T ss_pred ccccccCCcc-ccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Confidence 2222111100 122222222222333344444555677666655666668889999999999999999999999999999
Q ss_pred hhhheeeccCCC
Q 016580 324 GLYTVVWGKSKD 335 (387)
Q Consensus 324 g~~l~~~~~~~~ 335 (387)
++.++...+.++
T Consensus 316 Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 316 SIFLYSLYPARD 327 (345)
T ss_pred HHHHhhcCCccc
Confidence 999998555443
No 23
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.63 E-value=2.1e-14 Score=122.74 Aligned_cols=224 Identities=15% Similarity=0.095 Sum_probs=181.3
Q ss_pred HHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCcccc
Q 016580 89 GFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIIN 168 (387)
Q Consensus 89 g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~ 168 (387)
....+.+....-+.|+++.|-....+-.++-|+-++++++++.|.+.+++ |...+++.++|+++..+..+..
T Consensus 91 cs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~Kv-- 162 (337)
T KOG1580|consen 91 CSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKENKV-- 162 (337)
T ss_pred HHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhhcccccc--
Confidence 34444777788889999999998888899999999999999999999999 6999999999999986544322
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHhcc--C
Q 016580 169 FTSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYP-AELSLSTLICLMGVVEGAAVSLIMER--D 245 (387)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~--~ 245 (387)
.+..+.....|-++.+++-..-++-...+.+..+.+. ..-.++++.++.++..+..-.++.+. +
T Consensus 163 -------------~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElwe 229 (337)
T KOG1580|consen 163 -------------GGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWE 229 (337)
T ss_pred -------------CCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHH
Confidence 2344566778999999999999999988888776554 34677888888888777665544332 1
Q ss_pred cccccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhh
Q 016580 246 MSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGL 325 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~ 325 (387)
...+....+..|+-+...++ ++.+++.+.+.-+.+.+|..-+++..+.-.++++.++++++.+++.+||+|.++++.++
T Consensus 230 F~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL 308 (337)
T KOG1580|consen 230 FFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSAL 308 (337)
T ss_pred HHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHh
Confidence 11222223456777777887 49999999999999999999999999999999999999999999999999999999998
Q ss_pred hheeeccCC
Q 016580 326 YTVVWGKSK 334 (387)
Q Consensus 326 ~l~~~~~~~ 334 (387)
..-....++
T Consensus 309 ~~D~~~GK~ 317 (337)
T KOG1580|consen 309 TADVVDGKK 317 (337)
T ss_pred hhHhhcCCc
Confidence 876655444
No 24
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.63 E-value=3.1e-15 Score=115.94 Aligned_cols=135 Identities=18% Similarity=0.195 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHhHHHHH
Q 016580 18 KPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIR-PKLTLPVFLRIMALGFLEPVLD 96 (387)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~ 96 (387)
...+++++++++|+...++.|..+ ++.+|...++.|..+..++++.++...++... ...+.|.|..+.+.|+.+ +++
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls 80 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence 357899999999999999999996 89999999999999999999888876554432 234678888888888766 999
Q ss_pred HHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhh
Q 016580 97 QNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMT 160 (387)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~ 160 (387)
+.+||+|++...++.+.++..++|+++.+++++++|||++.. +|+|+.+..+|++++.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999 5999999999999875
No 25
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.60 E-value=6.1e-14 Score=126.27 Aligned_cols=229 Identities=17% Similarity=0.199 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhh
Q 016580 78 TLPVFLRIMALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAM 157 (387)
Q Consensus 78 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~ 157 (387)
++++..++.+.+++. .+++.+.++++++++++..+++.++..++|++++++++|+|++.+ ||+++.+.++|+.
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence 457777788888886 999999999999999999999999999999999999999999999 5999999999999
Q ss_pred hhhhccCccccccCCCCCCCCCCC--CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHH-HHHHHHH
Q 016580 158 VMTLYKGPIINFTSGGAGSHHGSS--VDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLI-CLMGVVE 234 (387)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~-~~~~~v~ 234 (387)
++...+.... +.+++.. ..........|.++.++++++.++..++.++..|+.+.+......+ ...+.+.
T Consensus 86 lv~~~~~~~~-------~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~ 158 (244)
T PF04142_consen 86 LVQLSSSQSS-------DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILF 158 (244)
T ss_pred eeecCCcccc-------ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 9865432210 0000000 0112445679999999999999999999999999865444444444 3444444
Q ss_pred HHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhh
Q 016580 235 GAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGS 314 (387)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~ 314 (387)
.++...+.+.... .+...-..|-...+..++..+++=++....+|+.+...=........+++.+.++++++.+++...
T Consensus 159 ~~~~~~~~~~~~~-~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f 237 (244)
T PF04142_consen 159 NLLALLLSDGSAI-SESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSF 237 (244)
T ss_pred HHHHHhccccccc-ccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 4443323222110 000000122222233333455556666777899999888888999999999999999999999999
Q ss_pred hhhHHHH
Q 016580 315 ILGAILI 321 (387)
Q Consensus 315 ~~G~~li 321 (387)
.+|..++
T Consensus 238 ~lg~~~V 244 (244)
T PF04142_consen 238 LLGAALV 244 (244)
T ss_pred hhheecC
Confidence 9998753
No 26
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.59 E-value=8.3e-13 Score=117.49 Aligned_cols=253 Identities=15% Similarity=0.159 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHH
Q 016580 47 HYVLAVYRHVVATIVLAPFAFVLERKI---RPKLTLPVFLRIMALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVT 123 (387)
Q Consensus 47 p~~~~~~r~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~ 123 (387)
|..++.+..++-.++....-...+++. +...+|++..+-+....+..++...+-+.+++|++.+..++..+..++|+
T Consensus 45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FI 124 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFI 124 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHH
Confidence 888888888777776655544433322 23567777665554444444899999999999999999999999999999
Q ss_pred HHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 016580 124 FILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGW 203 (387)
Q Consensus 124 ~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~ 203 (387)
.+++.+|.-|++++. -..-+.+..+|+.+.+..+ .+.+..|.++.++++++-
T Consensus 125 llFs~if~lEk~~w~------L~l~v~lI~~Glflft~Ks----------------------Tqf~i~Gf~lv~~aS~~s 176 (349)
T KOG1443|consen 125 LLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTYKS----------------------TQFNIEGFFLVLAASLLS 176 (349)
T ss_pred HHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEecc----------------------cceeehhHHHHHHHHHhh
Confidence 999999999999997 2555556666777776432 245678999999999999
Q ss_pred HHHHHHHHHHhccCC----CchHHHHHHHHHHHHHHHHHHHHhccCcc-----cccccch-hhHHHHHHhhhhhhhHHHH
Q 016580 204 AGFFILQSFTLKKYP----AELSLSTLICLMGVVEGAAVSLIMERDMS-----AWKIGFD-SRLLAAAYSGVVCSGIAYY 273 (387)
Q Consensus 204 a~~~v~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~g~~~~~~~~~ 273 (387)
++-..+.+..+++.+ +|....+.......+.++|..+.+|+... .++.... ..+..+...++ ++.+++.
T Consensus 177 GlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~ 255 (349)
T KOG1443|consen 177 GLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFL 255 (349)
T ss_pred hhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHH
Confidence 988888888888755 57888888888888888888888776321 2222111 23333333333 2444443
Q ss_pred ---HHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhe
Q 016580 274 ---VQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTV 328 (387)
Q Consensus 274 ---~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~ 328 (387)
+-+.-+.+++..+.++.....-+.+.+++..+.+|.++...|+|..+...|+.++
T Consensus 256 l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 256 LEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3355578889999999999999999999999999999999999999999999988
No 27
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.58 E-value=7.4e-14 Score=124.21 Aligned_cols=266 Identities=13% Similarity=0.158 Sum_probs=210.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHH
Q 016580 46 SHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFI 125 (387)
Q Consensus 46 ~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~ 125 (387)
++..+.+.+.+.+.++-..++.++..+.. .++.++.....++.+ .+...|-+.|++|.+-....+-.++-.+-+++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~---~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml 125 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKELS---GVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVML 125 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccCC---CCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence 57788888888888887666544333322 235566677777777 88999999999999999999999999999999
Q ss_pred HHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 016580 126 LAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAG 205 (387)
Q Consensus 126 la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~ 205 (387)
...++.|.|++.. +.....+...|+.+..+.+..+ +....+......|..+....-++-++
T Consensus 126 mg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-------------s~~~~g~~ns~~G~~Ll~~~L~fDgf 186 (327)
T KOG1581|consen 126 MGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-------------SSSKSGRENSPIGILLLFGYLLFDGF 186 (327)
T ss_pred HHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-------------CccccCCCCchHhHHHHHHHHHHHhh
Confidence 9999999999999 4888888999998887664322 22234556778999999999999999
Q ss_pred HHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHhccCccc--ccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcC
Q 016580 206 FFILQSFTLKKYP-AELSLSTLICLMGVVEGAAVSLIMERDMSA--WKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQK 282 (387)
Q Consensus 206 ~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~ 282 (387)
-+..++++.+++. ++..++++.+++..+......+..+..... +-...+..++-++.... ++++++.+.++-+++.
T Consensus 187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~~F 265 (327)
T KOG1581|consen 187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIERF 265 (327)
T ss_pred HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHhhc
Confidence 9999999998755 478889999999888877763222221111 11112235556666666 4899999999999999
Q ss_pred CceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCC
Q 016580 283 GPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKD 335 (387)
Q Consensus 283 ~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~ 335 (387)
++.+.+.++.++-+++++++.+.+|.++++.||+|..+++.|+.+-.+-++++
T Consensus 266 Gslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~ 318 (327)
T KOG1581|consen 266 GSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK 318 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999887766663
No 28
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.2e-12 Score=118.07 Aligned_cols=292 Identities=13% Similarity=0.091 Sum_probs=222.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh
Q 016580 14 LSKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAV--YRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFL 91 (387)
Q Consensus 14 ~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~--~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 91 (387)
.+...+++.++.-++.-..+.+..|+++...--|..+.. ++.+.+.+.+...-.. +--..++++++..++.+...++
T Consensus 8 ~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~l 86 (314)
T KOG1444|consen 8 KKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLL 86 (314)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHH
Confidence 444556777777777778888999999854333444444 7777776666554322 2223456778888888888888
Q ss_pred HHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccC
Q 016580 92 EPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTS 171 (387)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~ 171 (387)
. .+....-..+++|.+....+++...+|+++++.+..++|.+++... +.++....+|.......
T Consensus 87 f-~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s~~~~~~--------- 150 (314)
T KOG1444|consen 87 F-VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGSVAAAFT--------- 150 (314)
T ss_pred H-HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHHHhhccc---------
Confidence 7 8888888999999999999999999999999999999998888884 88887777777766422
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHhccCc----
Q 016580 172 GGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYP-AELSLSTLICLMGVVEGAAVSLIMERDM---- 246 (387)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 246 (387)
+...+..|..+++...+.-+.+.+..|+..+..+ +.+.+.+|..+.....+....++.++..
T Consensus 151 -------------d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~ 217 (314)
T KOG1444|consen 151 -------------DLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSL 217 (314)
T ss_pred -------------cceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHh
Confidence 2234456999999999999999999999877533 3577889999999988888876655311
Q ss_pred --ccccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhh
Q 016580 247 --SAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFG 324 (387)
Q Consensus 247 --~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g 324 (387)
..|. ....+..+...+++ ++.-.++-..+.+..++++.+++.......+.+...++++++.++..++|..+-++|
T Consensus 218 ~~~~~~--~~~~~~~~~lScv~-gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~g 294 (314)
T KOG1444|consen 218 NFDNWS--DSSVLVVMLLSCVM-GFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFG 294 (314)
T ss_pred hccccc--chhHHHHHHHHHHH-HHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhh
Confidence 1121 12345566666665 566666778899999999999999888888888887878889999999999999999
Q ss_pred hhheeeccCCCCCC
Q 016580 325 LYTVVWGKSKDPPS 338 (387)
Q Consensus 325 ~~l~~~~~~~~~~~ 338 (387)
-+++++.+.++++.
T Consensus 295 gv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 295 GVLYSYATFRKKKQ 308 (314)
T ss_pred hhHHhhhhhhhccC
Confidence 99999887554433
No 29
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.58 E-value=6.9e-14 Score=108.48 Aligned_cols=136 Identities=16% Similarity=0.104 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHH
Q 016580 192 GTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIA 271 (387)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 271 (387)
..++++++++++++..++.|--.++.+ |...++.+.+...+++..+....++... .....++.|..++..|+ +++++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~-~~~~~~k~~lflilSGl-a~gls 80 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQA-GGEIGPKSWLFLILSGL-AGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceec-ccccCcceehhhhHHHH-HHHHH
Confidence 468899999999999999998888866 6788889999888888887765544221 11124468888888886 69999
Q ss_pred HHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheee
Q 016580 272 YYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVW 330 (387)
Q Consensus 272 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~ 330 (387)
.++|+++++..+++.+.++..+.|+++.++++++++|++|..+++|+++|++|.+++.+
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999999999999999998764
No 30
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.55 E-value=1.6e-13 Score=120.41 Aligned_cols=280 Identities=15% Similarity=0.146 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHhhC----C----CChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-------------CHHHHHHHHH
Q 016580 29 GYAGMYIITMVSLKH----G----MSHYVLAVYRHVVATIVLAPFAFVLERKIRPKL-------------TLPVFLRIMA 87 (387)
Q Consensus 29 ~~~~~~~~~k~~~~~----~----~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 87 (387)
.=..+.+..|++ +. + -+|+......++.-.+++..+..++.|...+.. +.+ -...+.
T Consensus 14 sGs~Ntl~aKwa-dsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~-p~lfl~ 91 (372)
T KOG3912|consen 14 SGSFNTLVAKWA-DSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN-PVLFLP 91 (372)
T ss_pred hccHHHHHHHHH-HhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC-cceecC
Confidence 334567778887 31 1 348888888888888999998888766433211 111 112233
Q ss_pred HHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccc
Q 016580 88 LGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPII 167 (387)
Q Consensus 88 ~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~ 167 (387)
-.++- ..+..+.|.++.+++++..+++.....+|+.+++.-+++.+++.+ ||+|+....+|++++...
T Consensus 92 Pal~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~----- 159 (372)
T KOG3912|consen 92 PALCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSL----- 159 (372)
T ss_pred hHHHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeee-----
Confidence 45555 888899999999999999999999999999999999999999999 599999999999988643
Q ss_pred cccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHhccC-
Q 016580 168 NFTSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYP-AELSLSTLICLMGVVEGAAVSLIMERD- 245 (387)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~- 245 (387)
|.+-...+..+-+....|+++.+++-+.-|+..++-+|..++++ +|.....|..++|.+++.........-
T Consensus 160 -------d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~ 232 (372)
T KOG3912|consen 160 -------DVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIP 232 (372)
T ss_pred -------ecccccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhhee
Confidence 22211222233456678999999999999999999999998766 689999999999977765555433210
Q ss_pred -cccccccch---hhHH---------HHHHhhhhhhhHHHHHHHH----HHhcCCceeEeecchhHHHHHHHHHHHHhhc
Q 016580 246 -MSAWKIGFD---SRLL---------AAAYSGVVCSGIAYYVQGF----VSKQKGPVFVTSFSPLCMIITSALGVIILAE 308 (387)
Q Consensus 246 -~~~~~~~~~---~~~~---------~~~~~g~~~~~~~~~~~~~----a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e 308 (387)
...++-.+. .+|. ..+++.+.+..++..+++. .-|+.++++-..+..+...+-.+++.....|
T Consensus 233 ~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E 312 (372)
T KOG3912|consen 233 SGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE 312 (372)
T ss_pred cCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 001111010 1111 1122222223333333332 2567888888899999999999999999999
Q ss_pred ccchhhhhhHHHHHhhhhhee
Q 016580 309 LVHLGSILGAILIVFGLYTVV 329 (387)
Q Consensus 309 ~~t~~~~~G~~li~~g~~l~~ 329 (387)
.+...|+.|.++.+.|++++.
T Consensus 313 ~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 313 YFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887
No 31
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.49 E-value=1.2e-13 Score=111.64 Aligned_cols=125 Identities=26% Similarity=0.427 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhhcc
Q 016580 28 FGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNLYYLGMKYT 107 (387)
Q Consensus 28 ~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 107 (387)
++||...++.|... ++.+|....++|+.++.+ ++++.....++.....+++++......+.+....++.+++++++++
T Consensus 1 ~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLL-KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHh-ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 47999999999995 779999999999999998 6666655555444566778888888899886699999999999999
Q ss_pred CchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhh
Q 016580 108 TATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMT 160 (387)
Q Consensus 108 ~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~ 160 (387)
+++.++++.++.|+++.+++++++||+++.+ +++|+++++.|++++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 5999999999998874
No 32
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.41 E-value=5.6e-13 Score=107.69 Aligned_cols=125 Identities=24% Similarity=0.344 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHHHHHHHHHHh
Q 016580 201 FGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSK 280 (387)
Q Consensus 201 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~ 280 (387)
++||.+.+..|+..++.+ +....++++..+.+ .++...+.+... ....+...+...++.+++++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 468999999999999876 79999999999998 666665554432 22224457778888888878999999999999
Q ss_pred cCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhee
Q 016580 281 QKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVV 329 (387)
Q Consensus 281 ~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~ 329 (387)
+.++..++.+.+++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988754
No 33
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.2e-11 Score=108.68 Aligned_cols=268 Identities=13% Similarity=0.058 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhhc-cCchhHHHhhchhHHHHHHH
Q 016580 48 YVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNLYYLGMKY-TTATFASATVNILPAVTFIL 126 (387)
Q Consensus 48 ~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~-~~~~~~~~l~~~~pi~~~~l 126 (387)
-.++|..+++-+.--+++.--. ...+++.+.+++...+.. +...+.+-++++++ .+...=.++.+-.++.++++
T Consensus 34 NLITFaqFlFia~eGlif~skf-~~~k~kiplk~Y~i~V~m----FF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~ 108 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKF-FTVKPKIPLKDYAITVAM----FFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMIL 108 (330)
T ss_pred eehHHHHHHHHHHhceeeeccc-cccCCCCchhhhheehhe----eeeeeeeccceeeecccceEEEEEecCcHHHHHHH
Confidence 4566666666665555543111 112355566655544332 24455666688887 55566677899999999999
Q ss_pred HHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 016580 127 AIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGF 206 (387)
Q Consensus 127 a~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~ 206 (387)
+++++|.|.+.+ |..++.+..+|+++.++.+..+.+- .. +.-+++.+......+..|+.+...+.+..|..
T Consensus 109 g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~--~~-~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~m 179 (330)
T KOG1583|consen 109 GWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS--KL-SGLDSGSAQSDFFWWLIGIALLVFALLLSAYM 179 (330)
T ss_pred HHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh--hh-cccccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 5999999999999998876544210 00 00011112233344568999999999999999
Q ss_pred HHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHh--------ccCc---ccccccchhhHHHHHHhhhhhhhHHHHH
Q 016580 207 FILQSFTLKKYP-AELSLSTLICLMGVVEGAAVSLIM--------ERDM---SAWKIGFDSRLLAAAYSGVVCSGIAYYV 274 (387)
Q Consensus 207 ~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 274 (387)
.++++...++++ ++-+..+|..+.....++...--. ..+. +.....-+..|..++ +..+.++.
T Consensus 180 giyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl-----~n~L~Qy~ 254 (330)
T KOG1583|consen 180 GIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLL-----FNVLTQYF 254 (330)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHH-----HHHHHHHH
Confidence 999999998877 578888888887766655433100 0000 000001122344433 34445555
Q ss_pred HHHH----HhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCC
Q 016580 275 QGFV----SKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSK 334 (387)
Q Consensus 275 ~~~a----~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~ 334 (387)
...+ -.++++.+++++..++-.++.+++.+.|+.++++..|+|..++++|.+++.....+
T Consensus 255 CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~ 318 (330)
T KOG1583|consen 255 CIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH 318 (330)
T ss_pred HHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5444 45578889999999999999999999999999999999999999999888754443
No 34
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.27 E-value=3.7e-11 Score=100.38 Aligned_cols=212 Identities=16% Similarity=0.139 Sum_probs=160.6
Q ss_pred HHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCC
Q 016580 94 VLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGG 173 (387)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~ 173 (387)
...++.|..|++..+++.++.+..+...|+.+++++.+|+++... |+++.++++.|++++.+.++
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN--------- 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADN--------- 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccc---------
Confidence 678899999999999999999999999999999999999999998 69999999999999976553
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH-----HHHHHHHHHHhccCccc
Q 016580 174 AGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMG-----VVEGAAVSLIMERDMSA 248 (387)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~ 248 (387)
.....+.|+.+++.+++..|+|-+..|+....-+ --....++...+ .+..-++.+.. .....
T Consensus 129 -----------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn-~Gdaa~FmS~LGF~NL~~~~~~~lIL~~-T~VE~ 195 (290)
T KOG4314|consen 129 -----------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNAN-FGDAAHFMSCLGFFNLCFISFPALILAF-TGVEH 195 (290)
T ss_pred -----------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHHHhhhHHHHHH-hchHH
Confidence 2356789999999999999999999999887533 111111111111 11112222211 12333
Q ss_pred ccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhe
Q 016580 249 WKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTV 328 (387)
Q Consensus 249 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~ 328 (387)
|+.-....|..+...+.+ +..-.++.+.++....|...++-+....+....++.++-+-..+.....|.++|+.|.+++
T Consensus 196 ~qsFA~~PWG~l~G~A~L-~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLi 274 (290)
T KOG4314|consen 196 LQSFAAAPWGCLCGAAGL-SLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILI 274 (290)
T ss_pred HHHHhhCCchhhhhHHHH-HHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhe
Confidence 432233467777766665 4555677788999999999999999999999999987666668889999999999999888
Q ss_pred eeccCC
Q 016580 329 VWGKSK 334 (387)
Q Consensus 329 ~~~~~~ 334 (387)
.....+
T Consensus 275 iiP~d~ 280 (290)
T KOG4314|consen 275 IIPEDK 280 (290)
T ss_pred ecccch
Confidence 765433
No 35
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.27 E-value=1.3e-09 Score=98.07 Aligned_cols=249 Identities=16% Similarity=0.172 Sum_probs=172.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--HHHHHHHHHHHHhHHHHHHHHHHHhhhccCchhHHHh-hchhHH
Q 016580 45 MSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLT--LPVFLRIMALGFLEPVLDQNLYYLGMKYTTATFASAT-VNILPA 121 (387)
Q Consensus 45 ~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi 121 (387)
-+|..-++.-...+.++-+..... .+ +..+ .+.+...++.|++- .+++...+.++++...+.+.++ ..++-+
T Consensus 10 G~~~~Q~lG~t~Gali~alv~~~~-~~---p~~~~~~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLv 84 (269)
T PF06800_consen 10 GKPANQILGTTIGALIFALVVFLF-RQ---PAFSMSGTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLV 84 (269)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH-hC---CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHH
Confidence 345555555555555554444433 22 2333 37777778888887 9999999999999999999988 466677
Q ss_pred HHHHHHHHHhccccceeeccccchhh---HHHHHhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCchhhHHHHHHH
Q 016580 122 VTFILAIIFRLETVNVRRLQSLAKVI---GTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSSVDSSDSHFFTGTLMLIG 198 (387)
Q Consensus 122 ~~~~la~~~l~e~~~~~~~~~~~~~~---g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~ 198 (387)
.+.++++++++|.-+..+ +.+ ++++.++|+++....++++ .......+...|....++
T Consensus 85 g~sl~gv~~fgEW~~~~~-----~~~G~~Al~liiiGv~lts~~~~~~--------------~~~~~~~~~~kgi~~Ll~ 145 (269)
T PF06800_consen 85 GTSLIGVLFFGEWTTTTQ-----KIIGFLALVLIIIGVILTSYQDKKS--------------DKSSSKSNMKKGILALLI 145 (269)
T ss_pred HHHHHHHhhcCCCCCcch-----HHHHHHHHHHHHHHHHHhccccccc--------------cccccccchhhHHHHHHH
Confidence 799999999999988775 333 5567788888876544321 011124456789999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHHHHHHHHH
Q 016580 199 SCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFV 278 (387)
Q Consensus 199 a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 278 (387)
+.+.|..|.+..|.. +.+ +....+-+.+.-.+....+....+. ..+ ....| .-+..|++ -.++..++..+
T Consensus 146 stigy~~Y~~~~~~~--~~~-~~~~~lPqaiGm~i~a~i~~~~~~~--~~~---~k~~~-~nil~G~~-w~ignl~~~is 215 (269)
T PF06800_consen 146 STIGYWIYSVIPKAF--HVS-GWSAFLPQAIGMLIGAFIFNLFSKK--PFF---EKKSW-KNILTGLI-WGIGNLFYLIS 215 (269)
T ss_pred HHHHHHHHHHHHHhc--CCC-hhHhHHHHHHHHHHHHHHHhhcccc--ccc---ccchH-HhhHHHHH-HHHHHHHHHHh
Confidence 999999999997653 223 5665554443333333333322211 111 11233 33445664 78889999999
Q ss_pred HhcCCceeEeecchhHHHHHHHHHHHHhhcccchhh----hhhHHHHHhhhhh
Q 016580 279 SKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGS----ILGAILIVFGLYT 327 (387)
Q Consensus 279 ~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~----~~G~~li~~g~~l 327 (387)
.++.+.+..=.+..+.++++.+.+.+++||+=+..+ ++|.++++.|.++
T Consensus 216 ~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 216 AQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999977664 5788888888764
No 36
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.23 E-value=4.1e-11 Score=101.96 Aligned_cols=282 Identities=15% Similarity=0.141 Sum_probs=197.8
Q ss_pred HHHHHHHHHhh-CCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhhccCc
Q 016580 32 GMYIITMVSLK-HGMS-HYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNLYYLGMKYTTA 109 (387)
Q Consensus 32 ~~~~~~k~~~~-~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~ 109 (387)
.+.+..|+.++ .+++ .+.+++++..++..-+..+-..+ ....+.++.+..+..+++. .+..+.--.+++|.+.
T Consensus 20 lmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~----~~~fR~t~aK~WfpiSfLL-v~MIyt~SKsLqyL~v 94 (309)
T COG5070 20 LMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLR----LVEFRLTKAKKWFPISFLL-VVMIYTSSKSLQYLAV 94 (309)
T ss_pred HHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHh----HhheehhhhhhhcCHHHHH-HHHHHhcccceeeeee
Confidence 44555676652 2333 45555666665555544442221 1122233333444445554 5555556689999999
Q ss_pred hhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCch
Q 016580 110 TFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSSVDSSDSHF 189 (387)
Q Consensus 110 ~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (387)
...+++.+++.+.++..+..++|.+++..+ ....++.+..-+.-...+. ++.. ......
T Consensus 95 piYTiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w~D~------------q~~~---~~~~~l 153 (309)
T COG5070 95 PIYTIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATWGDQ------------QASA---FKAQIL 153 (309)
T ss_pred eHHHHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhccchh------------hHHH---HHhccc
Confidence 999999999999999999999999999985 7777766665555433221 1101 112355
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHhccC-ccccccc-chhhHHHHHHhhhh
Q 016580 190 FTGTLMLIGSCFGWAGFFILQSFTLKKYP-AELSLSTLICLMGVVEGAAVSLIMERD-MSAWKIG-FDSRLLAAAYSGVV 266 (387)
Q Consensus 190 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~g~~ 266 (387)
..|.+++..-++..+.|....|+..+-.+ .....++|..+.+..+++.+..+.++. +...... +.....++...|++
T Consensus 154 N~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~ 233 (309)
T COG5070 154 NPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLC 233 (309)
T ss_pred CCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHH
Confidence 68999999999999999999888776322 358889999999999999998877652 2211111 12234566777775
Q ss_pred hhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCCCCCCC
Q 016580 267 CSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKDPPSSA 340 (387)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~~~ 340 (387)
++.-.++-.+.++.++.++.+++..++-.-..+.|.++++|+.+...+....+-.++..++...+.++++.++
T Consensus 234 -svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~ 306 (309)
T COG5070 234 -SVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQK 306 (309)
T ss_pred -HhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5555567889999999999999999999999999999999999999999999999988888887766554443
No 37
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.23 E-value=2.8e-10 Score=104.27 Aligned_cols=134 Identities=18% Similarity=0.256 Sum_probs=113.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhH
Q 016580 15 SKFKPYLAIISLQFGYAGMYIITMVSLKHGMSH--YVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLE 92 (387)
Q Consensus 15 ~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p--~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 92 (387)
...+|.+++++++++|+...+..|... ++.++ .....+++.++.++++++.+..++. ...+.+.+...+..+++.
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLV-KKEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG 201 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence 345799999999999999999999994 56664 4555578999999888887654322 233567777788888888
Q ss_pred HHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhh
Q 016580 93 PVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAM 157 (387)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~ 157 (387)
...++.++++++++.+++.++.+.++.|+++.+++++++||+++.. +++|+.+.+.|++
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~~ 260 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999 5999999998863
No 38
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=3.5e-11 Score=105.55 Aligned_cols=278 Identities=13% Similarity=0.069 Sum_probs=192.8
Q ss_pred HHHHHHhhC---CC-ChHHHHHHHHHHHHHHHHHHHHHhhhcCC----C--CCCHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 016580 35 IITMVSLKH---GM-SHYVLAVYRHVVATIVLAPFAFVLERKIR----P--KLTLPVFLRIMALGFLEPVLDQNLYYLGM 104 (387)
Q Consensus 35 ~~~k~~~~~---~~-~p~~~~~~r~~~~~l~l~~~~~~~~~~~~----~--~~~~~~~~~~~~~g~~~~~~~~~~~~~al 104 (387)
...|+.++. .+ .|..++++..++...+-+.+.....+-.+ + +++.+..+...-..++- .+...+-++.+
T Consensus 45 f~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL 123 (347)
T KOG1442|consen 45 FLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCL 123 (347)
T ss_pred hhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceeh
Confidence 345666522 12 37777788777776666666554433211 1 23444444444444443 44555556889
Q ss_pred hccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCCCCCCCCC
Q 016580 105 KYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSSVDS 184 (387)
Q Consensus 105 ~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (387)
+|.+++...+=.++..+|+.++.++++|+|-+... ..+..+.+.|-.+=.... ..
T Consensus 124 ~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lGvdqE-------------------~~ 178 (347)
T KOG1442|consen 124 KYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLGVDQE-------------------GS 178 (347)
T ss_pred hhcceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheehheeccccc-------------------cc
Confidence 99999999999999999999999999999988873 444444444544322110 12
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHHHHHHHHhccCccccc--cc-chhhHHHH
Q 016580 185 SDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPA-ELSLSTLICLMGVVEGAAVSLIMERDMSAWK--IG-FDSRLLAA 260 (387)
Q Consensus 185 ~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~-~~~~~~~~ 260 (387)
.+.-.+.|.++.+.|.++-|+..+..|+......+ -..+++|..+.+.++++|...+.+.-...+. .. ....|..+
T Consensus 179 ~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~m 258 (347)
T KOG1442|consen 179 TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILM 258 (347)
T ss_pred cCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHH
Confidence 34557899999999999999999999977655443 5788899999999999998866543211111 21 22355556
Q ss_pred HHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCCCCCC
Q 016580 261 AYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKDPPSS 339 (387)
Q Consensus 261 ~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~~ 339 (387)
...|++ ++.-.+.-.+=+|-++|.+-.+-....-..-.+++..+++|.-+..-|-|-.+++.|...+.+.|.++.+++
T Consensus 259 tLsglf-gF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 259 TLSGLF-GFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred HHHHHH-HHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 666665 332222334447889999999888889999999999999999999999999999999999998876554443
No 39
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.20 E-value=4.5e-10 Score=98.49 Aligned_cols=277 Identities=16% Similarity=0.131 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHhh-CCCCh--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 016580 28 FGYAGMYIITMVSLK-HGMSH--YVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNLYYLGM 104 (387)
Q Consensus 28 ~~~~~~~~~~k~~~~-~~~~p--~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 104 (387)
+++=....+..+.++ +++.| +.+++.++.+=..+.+..+... +.++...+||. ...++.+. .....+-+-++
T Consensus 53 f~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~rt---Y~~la~~t-~gtmGLsn~Sl 127 (367)
T KOG1582|consen 53 FLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWRT---YVILAFLT-VGTMGLSNGSL 127 (367)
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchhH---hhhhHhhh-hhccccCcCcc
Confidence 344445555555542 45654 3455555554433333332211 11122234444 44444444 55566666888
Q ss_pred hccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCCCCCCCCCCCCCC
Q 016580 105 KYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSSVDS 184 (387)
Q Consensus 105 ~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (387)
.|++-..-.++.++--+-+++.+.++.+.|.++.+ ..+..+..+|.++..+.++. .
T Consensus 128 gYLNYPtQviFKccKliPVmiggifIqGkRY~v~d------~~aA~lm~lGli~FTLADs~------------------~ 183 (367)
T KOG1582|consen 128 GYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHD------YIAAMLMSLGLIWFTLADSQ------------------T 183 (367)
T ss_pred ccccCcHHHHHHhhhhhhhhheeeeeccccccHHH------HHHHHHHHHHHHhhhhcccc------------------c
Confidence 88888777788888888899999999999999996 99999999999999887643 3
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHhccCccccccc---chhhHHHH
Q 016580 185 SDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYP-AELSLSTLICLMGVVEGAAVSLIMERDMSAWKIG---FDSRLLAA 260 (387)
Q Consensus 185 ~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 260 (387)
.++.+..|+.+.-.|-++-|.---.+++..+.++ +..++.++....|.+.+.........-...|+.- +.......
T Consensus 184 sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~ 263 (367)
T KOG1582|consen 184 SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYA 263 (367)
T ss_pred CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHH
Confidence 5677788998888888888877777888888766 3567788888899888887776655544445431 22233333
Q ss_pred HHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCC
Q 016580 261 AYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSK 334 (387)
Q Consensus 261 ~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~ 334 (387)
+..+. ++.++......-++..++..++.+....-.+++++++++|..++|.....|..+++.|+++-.+.++.
T Consensus 264 ~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 264 FLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred HHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 33343 35666666666788899999999999999999999999999999999999999999999998887743
No 40
>PRK13499 rhamnose-proton symporter; Provisional
Probab=99.19 E-value=1.2e-08 Score=95.52 Aligned_cols=299 Identities=13% Similarity=0.093 Sum_probs=183.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHHHHH-HHHHHhhh---cCCCCCCHHHHHHHHHHH
Q 016580 16 KFKPYLAIISLQFGYAGMYIITMVSLKHGMS--HYVLAVYRHVVATIVLA-PFAFVLER---KIRPKLTLPVFLRIMALG 89 (387)
Q Consensus 16 ~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~--p~~~~~~r~~~~~l~l~-~~~~~~~~---~~~~~~~~~~~~~~~~~g 89 (387)
-..|++..+++.++||+.++..|.. +.++ .++.+ -.+++.++.- ....+..+ ......+.+.+...++.|
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~wE~~W~v--~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV--KKWSWETMWSV--GGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc--CCCchhHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 4579999999999999999999996 5454 33221 1112222111 01111111 112234667788888888
Q ss_pred HhHHHHHHHHHHHhhhccCchhHHHh-hchhHHHHHHHHHHHhcccc---ceeeccccchhhHHHHHhhhhhhhhhccCc
Q 016580 90 FLEPVLDQNLYYLGMKYTTATFASAT-VNILPAVTFILAIIFRLETV---NVRRLQSLAKVIGTAVTVAGAMVMTLYKGP 165 (387)
Q Consensus 90 ~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~~la~~~l~e~~---~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~ 165 (387)
++- ..++..++.++++...+.+..+ ..++-+...++..++++|-. +..+ ...-.+|+++.++|+++.......
T Consensus 81 ~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 81 ALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 887 9999999999999999999877 88899999999999999765 2221 122377888899999998763321
Q ss_pred cccccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH-------HHHHHHhccCCCchHHHHHHHH---HHHHHH
Q 016580 166 IINFTSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFF-------ILQSFTLKKYPAELSLSTLICL---MGVVEG 235 (387)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~---~~~v~~ 235 (387)
. |.+ ++.+...+....+|+.+++++++.++.|. ...+...+...++......+.. .+..+.
T Consensus 158 k--------~~~-~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~ 228 (345)
T PRK13499 158 K--------ERK-MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAIT 228 (345)
T ss_pred c--------ccc-cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 1 000 00000234567899999999999999999 4433322111123333333332 333322
Q ss_pred H-HHHHH---hccCcccccc--cc----hhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEee---cc-hhHHHHHHHH
Q 016580 236 A-AVSLI---MERDMSAWKI--GF----DSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTS---FS-PLCMIITSAL 301 (387)
Q Consensus 236 ~-~~~~~---~~~~~~~~~~--~~----~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~---~~-~~~pv~~~~~ 301 (387)
- .+..+ ..+....... .+ .......+..|++ -.+++.++..+-.+.+...... +. .+..+++.+.
T Consensus 229 n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~-W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistlw 307 (345)
T PRK13499 229 NLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVM-WYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLW 307 (345)
T ss_pred HHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHh
Confidence 2 22221 1111110111 11 1122222444443 6777778888877776554433 34 7888999999
Q ss_pred HHHHhhcccc------hhhhhhHHHHHhhhhheeecc
Q 016580 302 GVIILAELVH------LGSILGAILIVFGLYTVVWGK 332 (387)
Q Consensus 302 ~~~~~~e~~t------~~~~~G~~li~~g~~l~~~~~ 332 (387)
+. +++|.=+ ...++|++++++|.++.....
T Consensus 308 Gi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~ 343 (345)
T PRK13499 308 GL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLGN 343 (345)
T ss_pred hh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 98 5999755 446899999999988876543
No 41
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.18 E-value=6.6e-11 Score=94.04 Aligned_cols=104 Identities=16% Similarity=0.310 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC--CCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHH
Q 016580 52 VYRHVVATIVLAPFAFVLERKI--RPKLTLPVFLRIMALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAII 129 (387)
Q Consensus 52 ~~r~~~~~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~ 129 (387)
.+|+.++.+++..+...+++.+ .+..+++.+.+....|.++...++.++++|+++.+ +.++++.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5799999999998887754321 22233455666777788886699999999999999 58889999999999999999
Q ss_pred HhccccceeeccccchhhHHHHHhhhhhhhhhc
Q 016580 130 FRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLY 162 (387)
Q Consensus 130 ~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~ 162 (387)
++|||++.+ +++++.++++|++++...
T Consensus 81 ~~~er~~~~------~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 81 FFKERLSPR------RWLAILLILIGVILIAWS 107 (113)
T ss_pred HhcCCCCHH------HHHHHHHHHHHHHHHhhh
Confidence 999999999 599999999999999754
No 42
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.16 E-value=4.3e-10 Score=94.38 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHhccCccc-----ccc---c-chhh
Q 016580 192 GTLMLIGSCFGWAGFFILQSFTLKKY------PAELSLSTLICLMGVVEGAAVSLIMERDMSA-----WKI---G-FDSR 256 (387)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~---~-~~~~ 256 (387)
|.++++.|.++.|++.++.|+..++. .++..+..+....+.+.+.+.....|..... ... . ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999998872 2689999999999999999998877653211 100 0 2234
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheee
Q 016580 257 LLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVW 330 (387)
Q Consensus 257 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~ 330 (387)
+..++..|++ ....++..+..+++++|...++...+..+...++++++++|++|+.+++|.++.+.|.++++|
T Consensus 81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 5555555654 677788889999999999999999999999999999999999999999999999999998875
No 43
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.14 E-value=2.9e-09 Score=98.80 Aligned_cols=275 Identities=14% Similarity=0.148 Sum_probs=158.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCHHHH-HHHHHHHHhH
Q 016580 15 SKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRP-KLTLPVF-LRIMALGFLE 92 (387)
Q Consensus 15 ~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~g~~~ 92 (387)
....|.+++++++++-+.+..+.|....+ .+. ...+. ...++.+ ...++.|++.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~-----------------------~~~~~~~~~~~~l~~~~W~~G~~~ 59 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR-----------------------GSLRAGSGGRSYLRRPLWWIGLLL 59 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc-----------------------ccccccchhhHHHhhHHHHHHHHH
Confidence 34679999999999999999999998421 110 00011 0011111 2345566666
Q ss_pred HHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCC
Q 016580 93 PVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSG 172 (387)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~ 172 (387)
..++..+-+.|+.+.|.+..+++..+.-++.++++..++|||++.++ +.|..+++.|..++.....++.
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~~~~~~----- 128 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIFAPKEE----- 128 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEeCCCCC-----
Confidence 67888899999999999999999999999999999999999999996 9999999999988764432210
Q ss_pred CCCCCCCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH---HHH-HhccC
Q 016580 173 GAGSHHGSSVDS---SDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAA---VSL-IMERD 245 (387)
Q Consensus 173 ~~~~~~~~~~~~---~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~-~~~~~ 245 (387)
+..+.++- ..+......... ...+...+.....+|..++ +..........+++...+. +.. +....
T Consensus 129 ----~~~t~~~l~~~~~~~~fl~y~~~-~~~~~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~ 201 (300)
T PF05653_consen 129 ----PIHTLDELIALLSQPGFLVYFIL-VLVLILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISILIKLTF 201 (300)
T ss_pred ----CcCCHHHHHHHhcCcceehhHHH-HHHHHHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHHHHHHh
Confidence 00000000 000011111111 1112222222222222222 1111111111222211111 110 11110
Q ss_pred cccccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchh-HHHHHHHHHHHHhhcc--cchh----hhhhH
Q 016580 246 MSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPL-CMIITSALGVIILAEL--VHLG----SILGA 318 (387)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~-~pv~~~~~~~~~~~e~--~t~~----~~~G~ 318 (387)
..+.....+..|..++.+ +.+......+.++++++.+++.+.++.+. -...+++-|.++++|. .++. ..+|+
T Consensus 202 ~g~~~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~ 280 (300)
T PF05653_consen 202 SGDNQFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGF 280 (300)
T ss_pred cCchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 011111222344444433 33456666778999999999999988885 4555666677778875 4443 46888
Q ss_pred HHHHhhhhheeecc
Q 016580 319 ILIVFGLYTVVWGK 332 (387)
Q Consensus 319 ~li~~g~~l~~~~~ 332 (387)
.+++.|+++++..|
T Consensus 281 ~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 281 LIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHhhheeeccC
Confidence 99999999886544
No 44
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.08 E-value=3.7e-09 Score=98.59 Aligned_cols=137 Identities=13% Similarity=0.139 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHH
Q 016580 17 FKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLD 96 (387)
Q Consensus 17 ~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 96 (387)
..|.++.++++++|+...+..|.. .++.++...... ..++.+++.++...... ....++..+...+..|++...++
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~-~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRA-GAEHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hccCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999998 467788776544 45566666666554322 12234555656678889888999
Q ss_pred HHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhcc
Q 016580 97 QNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYK 163 (387)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~ 163 (387)
+.++++++++.+++.++++.++.|+++.++++++++|+++.. +++|..+.++|++......
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999 5999999999999886543
No 45
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.07 E-value=1.3e-09 Score=101.73 Aligned_cols=138 Identities=15% Similarity=0.118 Sum_probs=109.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCccccc--ccchhhHHHHHHhhh
Q 016580 188 HFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWK--IGFDSRLLAAAYSGV 265 (387)
Q Consensus 188 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~ 265 (387)
+..+|+++.+++++.|+...+..|.. .+.+ |....+++..++.+.+.+......+ ..... ......+. ....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKIF-MLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHHH-HHHHHH
Confidence 45689999999999999999999764 5555 8999999999998877776543321 11110 00122232 233555
Q ss_pred hhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhee
Q 016580 266 VCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVV 329 (387)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~ 329 (387)
+..+..+.++++++++.++..++++.++.|+++.++++++++|+++..+++|.++.+.|+.++.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 5578889999999999999999999999999999999999999999999999999999988765
No 46
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.06 E-value=2.7e-09 Score=98.92 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHHH
Q 016580 193 TLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIAY 272 (387)
Q Consensus 193 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 272 (387)
.++.+.++++||..+++.|+..++.+ + ...+....+.+.+.|+...... ...|+..+. .++.....+.+.....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLA-QVGWSRLPA-TFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhcc-cCCCCCcch-hhHHHHHHHHHHHHHHH
Confidence 56789999999999999998877733 3 3455566667777776644211 123333233 33434444444588889
Q ss_pred HHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeec
Q 016580 273 YVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWG 331 (387)
Q Consensus 273 ~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 331 (387)
.++++++++.++..++++.++.|+++.++++++++|+++..+++|.++++.|+++....
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999887643
No 47
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.05 E-value=4.8e-09 Score=97.85 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHH
Q 016580 17 FKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLD 96 (387)
Q Consensus 17 ~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 96 (387)
..|.++.++++++|+...+..|.. .+ -++....++...++.+.+.++............+...+......+++...+.
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRL-PL-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-CC-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999997 33 3456667788888888887776543222111234577778888888887899
Q ss_pred HHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 97 QNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
+.++++++++.+++.++++..+.|++++++++++++|+++.. +++|..+.+.|+++...
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 59999999999998864
No 48
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.02 E-value=2.5e-09 Score=97.83 Aligned_cols=136 Identities=13% Similarity=0.167 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCc---ccccccchhh-HHHHHHhhhh
Q 016580 191 TGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDM---SAWKIGFDSR-LLAAAYSGVV 266 (387)
Q Consensus 191 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~g~~ 266 (387)
+|..+.++++++|+...+..|. ..+.+ |.++.+++++++.+.+.++.....+.. ..++...... +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4889999999999999999997 44555 899999999999888777654432210 1111111222 3445555654
Q ss_pred hhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhee
Q 016580 267 CSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVV 329 (387)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~ 329 (387)
.+..+.++++++++.++..++.+.++.|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999988664
No 49
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.96 E-value=2.2e-08 Score=95.43 Aligned_cols=140 Identities=9% Similarity=0.136 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhcC---C-CCCCHHHHHHHHHHHHh
Q 016580 17 FKPYLAIISLQFGYAGMYIITMVSLKHGMSH-YVLAVYRHVVATIVLAPFAFVLERKI---R-PKLTLPVFLRIMALGFL 91 (387)
Q Consensus 17 ~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p-~~~~~~r~~~~~l~l~~~~~~~~~~~---~-~~~~~~~~~~~~~~g~~ 91 (387)
..|..++++++++|+...++.|... +..++ ...+++...++.+.+.++.....+.. + ...+.. ....+..+++
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~ 265 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIM-SEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII 265 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH
Confidence 4588999999999999999999885 55544 46666766666666655554433221 1 112222 2223334554
Q ss_pred HHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCc
Q 016580 92 EPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGP 165 (387)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~ 165 (387)
. .+++.++++++++.+++.+++..++.|+++.++++++++|+++.. +++|.++.+.|++++...++.
T Consensus 266 t-~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~~~ 332 (358)
T PLN00411 266 T-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGKAN 332 (358)
T ss_pred H-HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhhhh
Confidence 4 678899999999999999999999999999999999999999999 599999999999998765443
No 50
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.93 E-value=2.1e-08 Score=93.65 Aligned_cols=133 Identities=15% Similarity=0.168 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHH
Q 016580 17 FKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLD 96 (387)
Q Consensus 17 ~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 96 (387)
..|.+++++++++|+...+..|.. .++.++....+ ....+++.+.... ........++..+...+..++. .++.
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~-~~~~~~~~~~~---~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~-t~~~ 228 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKY-ARGKNGITLFF---ILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAAA-MGFG 228 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-cCCCCchhHHH---HHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHHH-HHHH
Confidence 458999999999999999999998 46777766532 2233333332222 2221223456667777666654 4889
Q ss_pred HHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 97 QNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
+.++++++++.+++.++.+.++.|++..++++++++|+++.. +++|.++.+.|+.+...
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999999999 59999999999988754
No 51
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.87 E-value=1.3e-08 Score=91.02 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=125.1
Q ss_pred chhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccc-------cccCCCCCCCCCCC
Q 016580 109 ATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPII-------NFTSGGAGSHHGSS 181 (387)
Q Consensus 109 ~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~-------~~~~~~~~~~~~~~ 181 (387)
........+..++++++..+.+.+++++.. |+++..+...|+......+.+.. -....+.+.. ..
T Consensus 4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~--~~ 75 (222)
T TIGR00803 4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQS--SA 75 (222)
T ss_pred ccchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCC--Cc
Confidence 344556677888888888888888888855 68888888888775433221100 0000000000 00
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH----HHHh-ccC-cccccccchh
Q 016580 182 VDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAV----SLIM-ERD-MSAWKIGFDS 255 (387)
Q Consensus 182 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~-~~~-~~~~~~~~~~ 255 (387)
..........|....+.+.++-++-.++.++..|+.+.. .|...+......+. .... +.+ ...+... .
T Consensus 76 ~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 149 (222)
T TIGR00803 76 KTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTM----FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFF--I 149 (222)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCc----hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcc--c
Confidence 011223556788888888888888888888876664322 22222222222111 1111 111 0111100 0
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhe
Q 016580 256 RLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTV 328 (387)
Q Consensus 256 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~ 328 (387)
.+....+..++..+++..+....+|+.++...+....++++++.+++++++||+++..+++|+.+++.|++++
T Consensus 150 ~~~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 150 GYPTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred CCchHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 1111111122235667778889999999999999999999999999999999999999999999999998764
No 52
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.81 E-value=1.5e-07 Score=88.05 Aligned_cols=138 Identities=13% Similarity=0.221 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCCCHHHHHHHHHH
Q 016580 17 FKPYLAIISLQFGYAGMYIITMVSLKHGMSH---YVLAVYRHVVATIVLAPFAFVLERK-----IRPKLTLPVFLRIMAL 88 (387)
Q Consensus 17 ~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p---~~~~~~r~~~~~l~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 88 (387)
..|.+++++++++|+...++.|... +..++ ....++-...+.+.+.......... .+...+...+...+..
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIM-SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 4699999999999999999999973 33332 2333333334333333332222211 1123466778888889
Q ss_pred HHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 89 GFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 89 g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
+++..++.+.++++++++.+++.++.+..+.|++..++++++++|+++.. +++|..+.++|+++...
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINVF 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHhc
Confidence 99988999999999999999999999999999999999999999999999 59999999999988753
No 53
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.79 E-value=7.9e-08 Score=77.57 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhH
Q 016580 191 TGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGI 270 (387)
Q Consensus 191 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 270 (387)
.|.++.+.+.++-+..+++.|+-.++.++ ...... . ...+. .. . . ....++.|+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~~~~~-~~---~--------~---p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----IAALL-AF---G--------L---ALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----HHHHH-HH---h--------c---cHHHHHHHHHHHHH
Confidence 36788899999999999999998887653 221111 0 00000 00 0 0 11246678888999
Q ss_pred HHHHHHHHHhcCCceeEeecchhHHHHHHHHHHH--HhhcccchhhhhhHHHHHhhhhheeeccC
Q 016580 271 AYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVI--ILAELVHLGSILGAILIVFGLYTVVWGKS 333 (387)
Q Consensus 271 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~--~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 333 (387)
++++|.+++++.+++.+.++....+++..+.++. +++|++|+.+++|+++|++|++++.+.++
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999988888888875 79999999999999999999999875444
No 54
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.76 E-value=2.4e-08 Score=79.22 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHH
Q 016580 226 LICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVII 305 (387)
Q Consensus 226 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~ 305 (387)
+...++.+....+.....+....++......+...+..|++....++.++.+++++.++ .++.+..+.|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655543322122222222455666666776556899999999999995 88899999999999999999
Q ss_pred hhcccchhhhhhHHHHHhhhhheeeccCC
Q 016580 306 LAELVHLGSILGAILIVFGLYTVVWGKSK 334 (387)
Q Consensus 306 ~~e~~t~~~~~G~~li~~g~~l~~~~~~~ 334 (387)
++|+++..+++|.+++++|++++.+.+..
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999998876544
No 55
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.75 E-value=3.5e-09 Score=91.81 Aligned_cols=277 Identities=18% Similarity=0.227 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHH
Q 016580 18 KPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQ 97 (387)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 97 (387)
..++.+++-++.||+........ +-.|.+.+...-+.+.++.+.+++. ..|..+.+.+...++.|.+- ..++
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~----~~p~~T~~~~iv~~isG~~W-s~GQ 73 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF----VSPELTLTIFIVGFISGAFW-SFGQ 73 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee----ecCccchhhHHHHHHhhhHh-hhhh
Confidence 35788999999999998887665 4567777655555555544444433 23455667777777777776 8999
Q ss_pred HHHHHhhhccCchhHHHh-hchhHHHHHHHHHHHhccccceeeccccchhhH---HHHHhhhhhhhhhccCccccccCCC
Q 016580 98 NLYYLGMKYTTATFASAT-VNILPAVTFILAIIFRLETVNVRRLQSLAKVIG---TAVTVAGAMVMTLYKGPIINFTSGG 173 (387)
Q Consensus 98 ~~~~~al~~~~~~~~~~l-~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g---~~~~~~Gv~l~~~~~~~~~~~~~~~ 173 (387)
...+.|+++.+++.+.++ ..++-+-+.+++++.++|..+..+ ..+| +++.+.|+++....+.++
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~~~n------- 141 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQDRNN------- 141 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeecccc-------
Confidence 999999999999999988 566667799999999999988875 4443 456666777765433211
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccc
Q 016580 174 AGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGF 253 (387)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 253 (387)
......+....|....+.+.+.|-.|.+..+.+. .+ ...... -...+.+......-....+.. .
T Consensus 142 -------k~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v~-g~saiL-PqAiGMv~~ali~~~~~~~~~-----~ 205 (288)
T COG4975 142 -------KEEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--VD-GLSAIL-PQAIGMVIGALILGFFKMEKR-----F 205 (288)
T ss_pred -------ccccChHhhhhheeeeeeeccceeeeEeeecccc--cc-chhhhh-HHHHHHHHHHHHHhhcccccc-----h
Confidence 0112334466899999999999999999866543 22 233222 223343333333322222111 2
Q ss_pred hhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhh----hhhHHHHHhhhhhee
Q 016580 254 DSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGS----ILGAILIVFGLYTVV 329 (387)
Q Consensus 254 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~----~~G~~li~~g~~l~~ 329 (387)
++..+.-...|++ -+.++..+..+-++.+..+.=.++.+..+++.+-+.++++|+=|..+ ++|.++++.|..+..
T Consensus 206 ~K~t~~nii~G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 206 NKYTWLNIIPGLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHHHHHhhHHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 2233444556765 78889999999999999988889999999999999999999988876 578888888877665
Q ss_pred ec
Q 016580 330 WG 331 (387)
Q Consensus 330 ~~ 331 (387)
..
T Consensus 285 ~~ 286 (288)
T COG4975 285 IA 286 (288)
T ss_pred ee
Confidence 43
No 56
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.69 E-value=1e-07 Score=89.33 Aligned_cols=139 Identities=14% Similarity=0.236 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---------CCHH-HHHH
Q 016580 17 FKPYLAIISLQFGYAGMYIITMVSLKH--GMSHYVLAVYRHVVATIVLAPFAFVLERKIRPK---------LTLP-VFLR 84 (387)
Q Consensus 17 ~~~~l~~l~~~~~~~~~~~~~k~~~~~--~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~---------~~~~-~~~~ 84 (387)
..|.+++++++++|+...+..|... + +.+|..+.++....++++++|+........... .... .+..
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAM-TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 4699999999999999999999984 5 799999999999999999999876533211000 0001 1111
Q ss_pred HHHHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhc
Q 016580 85 IMALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLY 162 (387)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~ 162 (387)
.+..+.......+.+++++++++++..++++..+.|+++.++++++++|+++.. +++|..++++|+++....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHHH
Confidence 222333233445567778999999999999999999999999999999999999 599999999999998643
No 57
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.65 E-value=9.5e-07 Score=73.93 Aligned_cols=133 Identities=20% Similarity=0.294 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCC----C-------CHHH
Q 016580 19 PYLAIISLQFGYAGMYIITMVSLKH------GMSHYVLAVYRHVVATIVLAPFAFVLERKIRPK----L-------TLPV 81 (387)
Q Consensus 19 ~~l~~l~~~~~~~~~~~~~k~~~~~------~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~----~-------~~~~ 81 (387)
|.++++.++++.+...+..|..+++ ..++..+..+....+.+++++.+...++..... . ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5678999999999999999998855 789999999999999999999887765443110 0 2244
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhh
Q 016580 82 FLRIMALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMV 158 (387)
Q Consensus 82 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l 158 (387)
+...+..|++. .+.+.+.+..++++++...+++.....+++.++++++++|+++.. +++|+.++++|+++
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 45555566666 899999999999999999999999999999999999999999999 59999999999876
No 58
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.62 E-value=6.4e-07 Score=85.60 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhh
Q 016580 190 FTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSG 269 (387)
Q Consensus 190 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 269 (387)
..-..+.++--.+...+++..|...+..+-|..++.+++.++.+.+...........+.+. .....|..++..|++ +.
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~-~~ 125 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLC-HL 125 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHH-HH
Confidence 3344444444455567788888888887768999999999998776554322111111111 123366778888886 55
Q ss_pred HHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheee
Q 016580 270 IAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVW 330 (387)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~ 330 (387)
..+...+.++++.+++.++++..++|++++++++++++|+++..+++|.+++++|+.+...
T Consensus 126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 5677788999999999999999999999999999999999999999999999999998764
No 59
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.57 E-value=1.1e-06 Score=69.28 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=62.9
Q ss_pred HHHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhh
Q 016580 86 MALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMT 160 (387)
Q Consensus 86 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~ 160 (387)
...++++++++..++..++++.|.+.+..+.++.++++.+++++++||+++.+ |++|+.+.++|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 34455677889999999999999999999988999999999999999999999 6999999999999875
No 60
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.48 E-value=5.2e-07 Score=71.02 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=61.6
Q ss_pred hhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheee
Q 016580 264 GVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVW 330 (387)
Q Consensus 264 g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~ 330 (387)
++++.+++++++..++++.+...+-.+.++.++++.+++++++||++++.+++|.++++.|++++..
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3355788999999999999999999999999999999999999999999999999999999987653
No 61
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.47 E-value=3e-06 Score=78.86 Aligned_cols=128 Identities=12% Similarity=0.131 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH----HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhH
Q 016580 17 FKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHV----VATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLE 92 (387)
Q Consensus 17 ~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~----~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 92 (387)
.+|+++.+++.+.++...+..|.. +.+|...++.... .+.+++.++ ++. ++. ..+..+..+..|++-
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~-~~~-~~~~~~~~~~~Gi~~ 221 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----ILA-KPL-KKYAILLNILPGLMW 221 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----hcc-cch-HHHHHHHHHHHHHHH
Confidence 569999999999999999999986 3888888666555 444333333 111 122 334555566688885
Q ss_pred HHHHHHHHHHhhh-ccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchh----hHHHHHhhhhhhhh
Q 016580 93 PVLDQNLYYLGMK-YTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKV----IGTAVTVAGAMVMT 160 (387)
Q Consensus 93 ~~~~~~~~~~al~-~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~----~g~~~~~~Gv~l~~ 160 (387)
.+.+.+|+.+.+ +.+++.++++.+..|+...+++++++||+.++++ + +|.++.+.|+.++.
T Consensus 222 -~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~------~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 222 -GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKRE------MIAISVGIILIIIAANILG 287 (290)
T ss_pred -HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcce------eehhHHHHHHHHHHHHHHh
Confidence 999999999999 9999999999999999999999999999999995 8 99999999998875
No 62
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.46 E-value=5.2e-06 Score=76.81 Aligned_cols=134 Identities=16% Similarity=0.243 Sum_probs=106.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHH
Q 016580 16 KFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAV-YRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPV 94 (387)
Q Consensus 16 ~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~-~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 94 (387)
...|.++.++++++|+...+..|... ..++..... +......++..+... .... .....+.+......|++..+
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~g~~~~~ 226 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFL--SGFG-APILSRAWLLLLYLGVFSTG 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHh--cccc-ccCCHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999883 566666665 333322222222221 1111 34456788888889999866
Q ss_pred HHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhh
Q 016580 95 LDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMT 160 (387)
Q Consensus 95 ~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~ 160 (387)
..+.++++++++.+++..+++..+.|++..++++++++|+++.. +++|+.+.+.|+.+..
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999 4999999999998875
No 63
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=5e-07 Score=81.92 Aligned_cols=270 Identities=12% Similarity=0.120 Sum_probs=164.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCHHHHHHHHHHHHhH
Q 016580 14 LSKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKI-RPKLTLPVFLRIMALGFLE 92 (387)
Q Consensus 14 ~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 92 (387)
.+...|.++++.+.++.|.++.+.|..+.+ ... ... +.... .+.+ + -+..+.|++.
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~---------------ra~~gg~~yl--~--~~~Ww~G~lt 73 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGL---------------RAGEGGYGYL--K--EPLWWAGMLT 73 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hcc---------------cccCCCcchh--h--hHHHHHHHHH
Confidence 455689999999999999999999998522 111 000 10111 1111 1 1345667887
Q ss_pred HHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccCccccccCC
Q 016580 93 PVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPIINFTSG 172 (387)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~~~~~ 172 (387)
..++..+-|.|+.+.|.+..+++..++-++.++++..+++|+++..+ .+|..++++|-.+++. +.+.+
T Consensus 74 m~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~-haP~e----- 141 (335)
T KOG2922|consen 74 MIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVI-HAPKE----- 141 (335)
T ss_pred HHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEE-ecCcc-----
Confidence 78899999999999999999999999999999999999999999997 9999999999888753 32221
Q ss_pred CCCCCCCCCCCC-------CCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH-----HHHH-
Q 016580 173 GAGSHHGSSVDS-------SDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEG-----AAVS- 239 (387)
Q Consensus 173 ~~~~~~~~~~~~-------~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~~- 239 (387)
++.... .+..+.. ....+.-. ..+-....+.. ..+.+.+.......+.|..-. +..+
T Consensus 142 ------~~i~t~~el~~~~~~~~Fli-y~~~iil~--~~il~~~~~p~-~g~tnilvyi~i~s~iGS~tV~svKalg~ai 211 (335)
T KOG2922|consen 142 ------QEIESVEEVWELATEPGFLV-YVIIIILI--VLILIFFYAPR-YGQTNILVYIGICSLIGSLTVMSVKALGIAI 211 (335)
T ss_pred ------cccccHHHHHHHhcCccHHH-HHHHHHHH--HHHHheeeccc-ccccceeehhhHhhhhcceeeeeHHHHHHHH
Confidence 000000 0111111 11111111 11111111111 111123443333333332111 1111
Q ss_pred -HHhccCcccccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecch-hHHHHHHHHHHHHhhccc--chh--
Q 016580 240 -LIMERDMSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSP-LCMIITSALGVIILAELV--HLG-- 313 (387)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~~~~~e~~--t~~-- 313 (387)
.......+. ..+..|..++.+..+ ...-....++|++..++..++++.+ +-..++++-+.++|+|-- +..
T Consensus 212 klt~~g~~ql---~~~~ty~~~l~~~~~-~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i 287 (335)
T KOG2922|consen 212 KLTFSGNNQL---FYPLTWIFLLVVATC-VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDI 287 (335)
T ss_pred HHHhcCCccc---ccHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 111111111 122456665555553 5666677799999999999998887 556677788888898853 332
Q ss_pred --hhhhHHHHHhhhhheeecc
Q 016580 314 --SILGAILIVFGLYTVVWGK 332 (387)
Q Consensus 314 --~~~G~~li~~g~~l~~~~~ 332 (387)
..+|+..++.|++++...|
T Consensus 288 ~~~~~Gf~ti~~G~flL~~~k 308 (335)
T KOG2922|consen 288 AGELCGFVTIFLGIFLLHRTK 308 (335)
T ss_pred HHHHHhHHHhhheeeEeeeec
Confidence 4789999999999885444
No 64
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.42 E-value=2e-06 Score=77.20 Aligned_cols=143 Identities=11% Similarity=0.111 Sum_probs=115.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCccccc-ccchhhHHHHHHhhhh
Q 016580 188 HFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWK-IGFDSRLLAAAYSGVV 266 (387)
Q Consensus 188 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~ 266 (387)
+...|+++.+.|-+.|+..-.+.|-+ +..+ +.++..++.+.+....+.+.....+....+. ...+..+......++.
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 34579999999999999988887764 5546 6889999999998888777665544322222 1233456666666665
Q ss_pred hhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccC
Q 016580 267 CSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKS 333 (387)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 333 (387)
....+..|.++.++....++|.=++.+|++.+++|.++++|+++..|++..++..+|+....+...
T Consensus 82 -i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 82 -IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred -HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 678889999999999999999999999999999999999999999999999999999988776443
No 65
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.36 E-value=7.4e-06 Score=66.15 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHH
Q 016580 18 KPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQ 97 (387)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 97 (387)
.++++.+++.++-+...++.|... ++.+....... . . ..... . ......+..|++.+++++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~-~~~g~~~~~~~-~-~------~~~~~-~---------~~p~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGM-SRLPLLSHAWD-F-I------AALLA-F---------GLALRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-hhCCCccchhH-H-H------HHHHH-H---------hccHHHHHHHHHHHHHHH
Confidence 478899999999999999999995 44443332211 0 0 00000 0 000125677888889999
Q ss_pred HHHHHhhhccCchhHHHhhchhHHHHHHHHHH--HhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 98 NLYYLGMKYTTATFASATVNILPAVTFILAII--FRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 98 ~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~--~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
.+|.+++++.|.+.+..+.+..++++.+.++. ++||+++.. |++|+.+.++|++++..
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998888888885 899999999 59999999999999863
No 66
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.31 E-value=1.7e-05 Score=74.43 Aligned_cols=144 Identities=15% Similarity=0.073 Sum_probs=114.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--CHHHHHHHHHHHH
Q 016580 13 ALSKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKL--TLPVFLRIMALGF 90 (387)
Q Consensus 13 ~~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~ 90 (387)
..++.+|.++++++++++|.+.++.+... ++.++.++..+-.+++.++..+.+...++...... +++....++..++
T Consensus 163 ~~~~i~GDll~l~~a~lya~~nV~~E~~v-~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~ 241 (334)
T PF06027_consen 163 GSNPILGDLLALLGAILYAVSNVLEEKLV-KKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYAL 241 (334)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHH
Confidence 45778999999999999999999999995 78899999999999999988888777666654433 3333333233333
Q ss_pred hHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhccC
Q 016580 91 LEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKG 164 (387)
Q Consensus 91 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~ 164 (387)
+. ...+.+.-..+++++++...+=.-++.++..++.++++|+++++. .++|.++.++|.++....+.
T Consensus 242 ~l-f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 242 CL-FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HH-HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEccCC
Confidence 33 556667778889999988877778889999999999999999998 59999999999999865544
No 67
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.17 E-value=2.8e-05 Score=68.23 Aligned_cols=137 Identities=12% Similarity=0.114 Sum_probs=115.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHH
Q 016580 15 SKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPV 94 (387)
Q Consensus 15 ~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 94 (387)
-...|..+++.+..+|+.+.+..|.. .+..+.-.-+..-+.+++++.+|+-...... .-.++......+..++++..
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~-g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~--~l~~p~ll~laLgvavlSSa 221 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRA-GRAEHGTAGVAVGMLVAALIVLPIGAAQAGP--ALFSPSLLPLALGVAVLSSA 221 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchh-cccCCCchHHHHHHHHHHHHHhhhhhhhcch--hhcChHHHHHHHHHHHHhcc
Confidence 34578999999999999999999998 4456666667788889999999987643222 23356777778889999989
Q ss_pred HHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhh
Q 016580 95 LDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMT 160 (387)
Q Consensus 95 ~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~ 160 (387)
+-+.+=..++++.|....+++.++.|.+.++.++++++|+++.. ||.++...+.+..=.+
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGST 281 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999 5999998887766443
No 68
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.97 E-value=0.0001 Score=66.63 Aligned_cols=118 Identities=13% Similarity=0.067 Sum_probs=90.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHH
Q 016580 14 LSKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEP 93 (387)
Q Consensus 14 ~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 93 (387)
.+..++++.++++++.+....++.|.. +.+|....+-..+...+.-..+.... ++ ....+..++-++.|++-
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~~---~~~~k~~~~nil~G~~w- 205 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-KK---PFFEKKSWKNILTGLIW- 205 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-cc---cccccchHHhhHHHHHH-
Confidence 445689999999999999999998886 57888776655444444434443332 21 12223445556667776
Q ss_pred HHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceee
Q 016580 94 VLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRR 139 (387)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~ 139 (387)
..++.+++.+.+....+.+..+.++..++..+.+.+++||+-++++
T Consensus 206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke 251 (269)
T PF06800_consen 206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE 251 (269)
T ss_pred HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh
Confidence 9999999999999999999999999999999999999999988774
No 69
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.95 E-value=0.002 Score=59.71 Aligned_cols=300 Identities=14% Similarity=0.163 Sum_probs=181.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHH-hhhcC----CCCCCHHHHHHHHHHHH
Q 016580 16 KFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFV-LERKI----RPKLTLPVFLRIMALGF 90 (387)
Q Consensus 16 ~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~-~~~~~----~~~~~~~~~~~~~~~g~ 90 (387)
-..|+++..+..++-++.++..|.. ++++-...=.+..+++.+++ |+... ..-+. ....+...+....+.|+
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkv--k~WsWEs~Wlv~gi~swli~-P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKV--KGWSWESYWLVQGIFSWLIV-PWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhc--CCccHHHHHHHHHHHHHHHH-HHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 4579999999999999999999998 66665554444555555443 33222 11111 12335566777777888
Q ss_pred hHHHHHHHHHHHhhhccCchhHH-HhhchhHHHHHHHHHHHhccccc-eeeccccchhhHHHHHhhhhhhhhhccCcccc
Q 016580 91 LEPVLDQNLYYLGMKYTTATFAS-ATVNILPAVTFILAIIFRLETVN-VRRLQSLAKVIGTAVTVAGAMVMTLYKGPIIN 168 (387)
Q Consensus 91 ~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pi~~~~la~~~l~e~~~-~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~~ 168 (387)
+- +++...|=.+++|+..+... +...+..++..++-.++.++--. ..++..+..++|++++++|+.+....+....
T Consensus 82 lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke- 159 (344)
T PF06379_consen 82 LW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE- 159 (344)
T ss_pred HH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh-
Confidence 87 88999999999999999885 55788888888887776543210 1112233458999999999999975442221
Q ss_pred ccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh------ccCC-Cc----hHHHHHHHHHHHHHHHH
Q 016580 169 FTSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTL------KKYP-AE----LSLSTLICLMGVVEGAA 237 (387)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~------~~~~-~~----~~~~~~~~~~~~v~~~~ 237 (387)
.+. + ....+.+...|++.+++|++..|.+++-...-. .... +| .......+.-+.+.-..
T Consensus 160 -------~~~-~-~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~ 230 (344)
T PF06379_consen 160 -------KEL-G-EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLI 230 (344)
T ss_pred -------hhh-c-cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHH
Confidence 000 1 112344567899999999999888877543211 1111 11 11222334444555555
Q ss_pred HHHHhc---cCcc---cccccc---hhhHHHHHHhhhhhhhHHHHHHHHHHhcCCc----eeEeecchhHHHHHHHHHHH
Q 016580 238 VSLIME---RDMS---AWKIGF---DSRLLAAAYSGVVCSGIAYYVQGFVSKQKGP----VFVTSFSPLCMIITSALGVI 304 (387)
Q Consensus 238 ~~~~~~---~~~~---~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~----~~~s~~~~~~pv~~~~~~~~ 304 (387)
++++.. ++.. +..... .......+..|.+ -...+.+|..+-.+.+. .--.+.+.+..+++-+++.+
T Consensus 231 yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~l-Wy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~ 309 (344)
T PF06379_consen 231 YCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVL-WYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI 309 (344)
T ss_pred HHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 554432 1211 111111 1233334444443 55566666666666653 33456677888888899855
Q ss_pred Hhhcc------cchhhhhhHHHHHhhhhheeec
Q 016580 305 ILAEL------VHLGSILGAILIVFGLYTVVWG 331 (387)
Q Consensus 305 ~~~e~------~t~~~~~G~~li~~g~~l~~~~ 331 (387)
++|. .-..-++|+++++.+++++-+.
T Consensus 310 -lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 310 -LKEWKGASKKTIRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred -HHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 6663 2234588999999988876554
No 70
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.93 E-value=0.00015 Score=68.03 Aligned_cols=132 Identities=18% Similarity=0.079 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhccCC-C--chHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHHHHHHHHHH
Q 016580 203 WAGFFILQSFTLKKYP-A--ELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVS 279 (387)
Q Consensus 203 ~a~~~v~~~~~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~ 279 (387)
+..+.+.+++..++.. . |..+++.++....+...+.......... ....+...+..+++ ..++..+.+.++
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~al 85 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSFL-FFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3445577777776533 3 6788888888888777765544331111 11234444455554 788889999999
Q ss_pred hcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCCCCCCC
Q 016580 280 KQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKDPPSSA 340 (387)
Q Consensus 280 ~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~~~ 340 (387)
++.+...-.+.....|+.++++++++++++.+..++++.+++.+|+.+....+.++.+..+
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~ 146 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN 146 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence 9999999999999999999999999999999999999999999999999887665544443
No 71
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.92 E-value=9.1e-05 Score=58.75 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=57.8
Q ss_pred hhhhhHHHHHHHHHHhcCCceeEeec-chhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeecc
Q 016580 265 VVCSGIAYYVQGFVSKQKGPVFVTSF-SPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGK 332 (387)
Q Consensus 265 ~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 332 (387)
+.+.+++++++..++++.+...+=.+ ..+..+.+.+.++++++|++++.+++|.++|+.|++.+....
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 33468899999999999998766555 457888999999999999999999999999999999885444
No 72
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.76 E-value=0.00031 Score=57.56 Aligned_cols=132 Identities=15% Similarity=0.027 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHH
Q 016580 192 GTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIA 271 (387)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 271 (387)
..++++.+++.-++...++.++.++..+|...+++.+..+++.+..+..+.+.. .+.......|+..+ -|++ +...
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~ 77 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHH
Confidence 357888999999999999999998877789999999999999998887766543 22221222333332 4444 6777
Q ss_pred HHHHHHHHhcCCceeEeecch-hHHHHHHHHHHH----HhhcccchhhhhhHHHHHhhhhh
Q 016580 272 YYVQGFVSKQKGPVFVTSFSP-LCMIITSALGVI----ILAELVHLGSILGAILIVFGLYT 327 (387)
Q Consensus 272 ~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~~----~~~e~~t~~~~~G~~li~~g~~l 327 (387)
..+..+.+++.++.....+.. -+.+.+.+++.+ .-.+++++.+++|.++++.|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 788888999999876555443 566667777765 12456899999999999999864
No 73
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.64 E-value=2.8e-05 Score=68.77 Aligned_cols=138 Identities=15% Similarity=0.109 Sum_probs=111.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHH
Q 016580 15 SKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPV 94 (387)
Q Consensus 15 ~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 94 (387)
....+.+.++.+++.-+..+++.|+. .+..+.+..+.+-.+++.+.-+..+.......+| ..+++++....+|+++ .
T Consensus 188 ~~~~gt~aai~s~lf~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lGvfg-f 264 (346)
T KOG4510|consen 188 YDIPGTVAAISSVLFGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLGVFG-F 264 (346)
T ss_pred ccCCchHHHHHhHhhhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEehhhh-h
Confidence 34567888999999999999999998 5777766666666666666665555443333344 3678888889999999 9
Q ss_pred HHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 95 LDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 95 ~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
+++++.-.+++.--++-+++..++..++..+.-.+|+++.+|+.. |.|+++.+...+.+..
T Consensus 265 igQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws------~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 265 IGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWS------WVGAVMVVSSTVWVAL 325 (346)
T ss_pred HHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHH------hhceeeeehhHHHHHH
Confidence 999999999999999999999999999999999999999999995 9888877766665543
No 74
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.60 E-value=0.0003 Score=65.50 Aligned_cols=121 Identities=19% Similarity=0.204 Sum_probs=90.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhh
Q 016580 187 SHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPA-ELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGV 265 (387)
Q Consensus 187 ~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 265 (387)
.+...|..+++.++++.+....++|+...+.+. +..-. ......+ ....|+. |+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~------------------~~~~~~l---~~~~W~~----G~ 57 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG------------------SGGRSYL---RRPLWWI----GL 57 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc------------------chhhHHH---hhHHHHH----HH
Confidence 456789999999999999999999998776442 11100 0000011 1112332 22
Q ss_pred hhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeecc
Q 016580 266 VCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGK 332 (387)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 332 (387)
+...++..+.+.++...+++.++++..+..++..+++.++++|+++...++|+++++.|..+.....
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 2345566777889999999999999999999999999999999999999999999999988776544
No 75
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.55 E-value=0.00021 Score=55.90 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=56.2
Q ss_pred hhhhHHHHHHHHHHhcCCceeEeec-chhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeecc
Q 016580 266 VCSGIAYYVQGFVSKQKGPVFVTSF-SPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGK 332 (387)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 332 (387)
.+.+++++++..++++.+...+=.+ ..+..+.+.++++++|+|++++.+++|+++|+.|++......
T Consensus 38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3467888899999999887765444 446888889999999999999999999999999999986543
No 76
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.46 E-value=0.0004 Score=55.08 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=60.6
Q ss_pred HHHhHHHHHHHHHHHhhhccCchhHHHh-hchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 88 LGFLEPVLDQNLYYLGMKYTTATFASAT-VNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 88 ~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
..+..++.++.++..++++.|.+.+..+ ..+.-+.+.++++++++|+++.. |++|+.+.++|++.+-.
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence 4455568899999999999999999766 57999999999999999999999 69999999999998854
No 77
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.41 E-value=0.0025 Score=49.65 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=56.9
Q ss_pred HhHHHHHHHHHHHhhhccCchhHHHh-hchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhh
Q 016580 90 FLEPVLDQNLYYLGMKYTTATFASAT-VNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVM 159 (387)
Q Consensus 90 ~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~ 159 (387)
+..+.+++.++..++++.|.+.+..+ .....+.+.+++++++||+++.. |++++.+.+.|++.+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 44457899999999999999988654 77899999999999999999999 599999999999886
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00055 Score=52.53 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=58.7
Q ss_pred HHhHHHHHHHHHHHhhhccCchhHH-HhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhh
Q 016580 89 GFLEPVLDQNLYYLGMKYTTATFAS-ATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMT 160 (387)
Q Consensus 89 g~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~ 160 (387)
.++++.+++.++-.++++.|.+.+. +......+-+.+.++++++|+++.. |++++.+.++|++.+-
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 4445578999999999999999885 5588999999999999999999999 6999999999999875
No 79
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.38 E-value=0.00066 Score=53.11 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=60.1
Q ss_pred HHHhHHHHHHHHHHHhhhccCchhHHHh-hchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 88 LGFLEPVLDQNLYYLGMKYTTATFASAT-VNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 88 ~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
..++.++++..++..++++.|.+.+..+ ..+..+.+.+++++++||++++. |++|+.+.++|++.+-.
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 3455568899999999999999999766 77899999999999999999999 59999999999999854
No 80
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.35 E-value=0.0035 Score=51.33 Aligned_cols=130 Identities=13% Similarity=0.079 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 016580 20 YLAIISLQFGYAGMYIITMVSLKHGMS-HYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQN 98 (387)
Q Consensus 20 ~l~~l~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 98 (387)
+++++++-.+-+.+..+.... .+..+ |+..+++.+..+.+++..+....+++.....+... ++...-|+++ +....
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L-~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG-~~~V~ 79 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQL-GKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLG-VFFVL 79 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHH-HHHHH
Confidence 456666777777777777666 45565 99999999999999998888776654333322222 3344467777 88999
Q ss_pred HHHHhhhccCchhHHHhhchhHHH-HHHHHHH----HhccccceeeccccchhhHHHHHhhhhhh
Q 016580 99 LYYLGMKYTTATFASATVNILPAV-TFILAII----FRLETVNVRRLQSLAKVIGTAVTVAGAMV 158 (387)
Q Consensus 99 ~~~~al~~~~~~~~~~l~~~~pi~-~~~la~~----~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l 158 (387)
+..+.....+++.+..+.-+.=++ ..++..+ ..+++++.. |++|+.+.++|+++
T Consensus 80 ~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 80 SNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL 138 (138)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence 999999999999988775554444 4444442 245777776 69999999999864
No 81
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.0023 Score=52.48 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhh
Q 016580 190 FTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSG 269 (387)
Q Consensus 190 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 269 (387)
....+..++++++-.+..-...++.+..++|+...++.+..|++.+..+.++.+. ...+.......|+..+ -|++ ++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pwW~~~-GG~l-Ga 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPWWAWI-GGLL-GA 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCchHHHH-ccch-hh
Confidence 4567888999999999999999998887789999999999999999888877433 2223222222343332 2333 33
Q ss_pred HHHHHHHHHHhcCCce-eEeecchhHHHHHHHHHHHHhh----cccchhhhhhHHHHHhhhhheeec
Q 016580 270 IAYYVQGFVSKQKGPV-FVTSFSPLCMIITSALGVIILA----ELVHLGSILGAILIVFGLYTVVWG 331 (387)
Q Consensus 270 ~~~~~~~~a~~~~~~~-~~s~~~~~~pv~~~~~~~~~~~----e~~t~~~~~G~~li~~g~~l~~~~ 331 (387)
.-...-.....+.+++ ++.....-+.+.+++++.+=+. .+++...++|.+++++|+++..++
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 3233334445555544 4445555666677777665433 458999999999999996665443
No 82
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.33 E-value=0.00056 Score=61.79 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=70.9
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCC
Q 016580 256 RLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKD 335 (387)
Q Consensus 256 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~ 335 (387)
+.+....-+++ ..+.+.+.+.++++.+|+...++..+.++++.++++++++.+++..||++..+.++|+.+........
T Consensus 16 ~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 16 DTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 45566666665 78889999999999999999999999999999999999999999999999999999999988776554
No 83
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.24 E-value=0.0013 Score=50.92 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=58.1
Q ss_pred HhHHHHHHHHHHHhhhccCchhHHHh-hchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhh
Q 016580 90 FLEPVLDQNLYYLGMKYTTATFASAT-VNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMT 160 (387)
Q Consensus 90 ~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~ 160 (387)
++.+..++.++..++++.|.+.+..+ .....+.+.+++++++||++++. |++++.+.++|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 55558899999999999999988655 77999999999999999999999 5999999999999874
No 84
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.22 E-value=0.0025 Score=49.63 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHhcCCceeE-eecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhee
Q 016580 267 CSGIAYYVQGFVSKQKGPVFV-TSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVV 329 (387)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~ 329 (387)
+..+++++...++|+.|...+ ++-.....+.+.+.++++++|++++.+++|.++|+.|++...
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 357889999999999887643 444457778889999999999999999999999999998764
No 85
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.21 E-value=0.0021 Score=49.74 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHhcCCceeE-eecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheee
Q 016580 267 CSGIAYYVQGFVSKQKGPVFV-TSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVW 330 (387)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~ 330 (387)
+..+++++...++|+.|...+ ++-.-+..+.+.+.++++++|++++.+++|.++++.|++....
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 468889999999999887644 4444578888999999999999999999999999999998754
No 86
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.19 E-value=0.0011 Score=51.84 Aligned_cols=110 Identities=13% Similarity=0.166 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHh
Q 016580 24 ISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNLYYLG 103 (387)
Q Consensus 24 l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 103 (387)
++..++||...++.|.. .++.++..-.. +..-.... .. .+++ .......+-.+...|++.
T Consensus 2 l~Vg~~WG~Tnpfik~g-~~~~~~~~~~~-~~~~~~~~-----Ll--------~n~~-----y~ipf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRG-SSGLEKVKASL-QLLQEIKF-----LL--------LNPK-----YIIPFLLNQSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHH-HhhcCCccchH-HHHHHHHH-----HH--------HhHH-----HHHHHHHHHHHHHHHHHH
Confidence 34578999999999999 46555444331 21111111 00 1122 222444457888999999
Q ss_pred hhccCchhHHHh-hchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhh
Q 016580 104 MKYTTATFASAT-VNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVM 159 (387)
Q Consensus 104 l~~~~~~~~~~l-~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~ 159 (387)
+...+.+.+.++ +++.=++|++.++++.+|..+++ .++|+.+.++|+.+.
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 999999999988 58888889999987777776766 599999999998764
No 87
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0022 Score=49.23 Aligned_cols=65 Identities=22% Similarity=0.390 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHhcCCcee-EeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeecc
Q 016580 268 SGIAYYVQGFVSKQKGPVF-VTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGK 332 (387)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~-~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 332 (387)
..++|.+...++|+.+... .++-.-...+.+.+.++++|+|++++.+++|.++++.|++...+..
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 5778888899999988653 3455567788899999999999999999999999999999876543
No 88
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.07 E-value=0.01 Score=53.58 Aligned_cols=187 Identities=11% Similarity=0.057 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 016580 19 PYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQN 98 (387)
Q Consensus 19 ~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 98 (387)
|++.++++++++|++++-.|.. +.-|++.+-++......+.-+.+..+. . .+ +.+++.++-|.+- +.++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~--~~gDg~~fQw~~~~~i~~~g~~v~~~~--~-~p----~f~p~amlgG~lW-~~gN~ 70 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF--DTGDGFFFQWVMCSGIFLVGLVVNLIL--G-FP----PFYPWAMLGGALW-ATGNI 70 (254)
T ss_pred CchhHHHHHHHhcccceeeEec--cCCCcHHHHHHHHHHHHHHHHHHHHhc--C-CC----cceeHHHhhhhhh-hcCce
Confidence 5788999999999999999998 566888777777666666555554442 1 12 2344556666666 88999
Q ss_pred HHHHhhhccCchhHHHhhchhHH-HHHHHHHH-HhccccceeeccccchhhHHHHHhhhhhhhhhccCccc----cccCC
Q 016580 99 LYYLGMKYTTATFASATVNILPA-VTFILAII-FRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYKGPII----NFTSG 172 (387)
Q Consensus 99 ~~~~al~~~~~~~~~~l~~~~pi-~~~~la~~-~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~~~~~----~~~~~ 172 (387)
+-.-.++....+....+-++.-+ ..-..+++ +++++.... .....-++|++++++|..+...-+.+.. ....+
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~ 149 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEET 149 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCcccccccc
Confidence 99999999999999988666444 44444443 454433322 1223457888888888777755332220 00000
Q ss_pred CCCCC------CC---CCCCC------CCCchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016580 173 GAGSH------HG---SSVDS------SDSHFFTGTLMLIGSCFGWAGFFILQSFTLKK 216 (387)
Q Consensus 173 ~~~~~------~~---~~~~~------~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~ 216 (387)
..+.+ ++ ..+.+ .......|+.+++++++.|+...+=.....++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 150 PLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred ccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 00000 00 00001 11135689999999999999888777766555
No 89
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.02 E-value=0.024 Score=53.50 Aligned_cols=146 Identities=14% Similarity=0.065 Sum_probs=93.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHH-------HHHHHHhhCCCChHHHHHHHHH---HHHHH-HHHHHHHhh-h-cCC-----C
Q 016580 14 LSKFKPYLAIISLQFGYAGMY-------IITMVSLKHGMSHYVLAVYRHV---VATIV-LAPFAFVLE-R-KIR-----P 75 (387)
Q Consensus 14 ~~~~~~~l~~l~~~~~~~~~~-------~~~k~~~~~~~~p~~~~~~r~~---~~~l~-l~~~~~~~~-~-~~~-----~ 75 (387)
.+..||++.++++.+..+..+ +..+.+...+.++.....-.+. ++..+ -..++.+.. + +.. +
T Consensus 170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~ 249 (345)
T PRK13499 170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF 249 (345)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence 455789999999999999999 6666643346666655554444 33332 233333321 1 221 1
Q ss_pred CCC----HHHHHHHHHHHHhHHHHHHHHHHHhhhccCchhHHH---hh-chhHHHHHHHHHHHhccccceeeccccchhh
Q 016580 76 KLT----LPVFLRIMALGFLEPVLDQNLYYLGMKYTTATFASA---TV-NILPAVTFILAIIFRLETVNVRRLQSLAKVI 147 (387)
Q Consensus 76 ~~~----~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~---l~-~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~ 147 (387)
+.+ .+......+.|++- ..++.++..+-...+.+...+ +. ++..++..+.+. ++||+=+..++.-+.-++
T Consensus 250 ~~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~ 327 (345)
T PRK13499 250 SLAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSL 327 (345)
T ss_pred cccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHH
Confidence 112 23333335555555 888888888888886655544 65 666677777776 599998855556666788
Q ss_pred HHHHHhhhhhhhhh
Q 016580 148 GTAVTVAGAMVMTL 161 (387)
Q Consensus 148 g~~~~~~Gv~l~~~ 161 (387)
|+++.++|.+++..
T Consensus 328 G~vliI~g~~lig~ 341 (345)
T PRK13499 328 GCVVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHHHhh
Confidence 88899999888864
No 90
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.01 E-value=0.0017 Score=60.46 Aligned_cols=138 Identities=15% Similarity=0.179 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh---hCCCChHHHHHHHHHHHHHHHH-HHHHHhhhcCC---C--CCCHHHHHHHH
Q 016580 16 KFKPYLAIISLQFGYAGMYIITMVSL---KHGMSHYVLAVYRHVVATIVLA-PFAFVLERKIR---P--KLTLPVFLRIM 86 (387)
Q Consensus 16 ~~~~~l~~l~~~~~~~~~~~~~k~~~---~~~~~p~~~~~~r~~~~~l~l~-~~~~~~~~~~~---~--~~~~~~~~~~~ 86 (387)
...|...++++.+..+...++.|..+ .+.++++.+..+..-++..+++ |+......... . ..+...+ ...
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~-~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL-ILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH-HHH
Confidence 45799999999999999999999997 2369999999999999999998 87766444332 1 2233333 333
Q ss_pred HHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 87 ALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 87 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
...++. .+.|..-|..+.++++-..++....--+++.+.+++++++++++.+ .+|..++++|+.+-..
T Consensus 240 ~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n------~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 240 LNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLN------ALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhh------HHHHHHHHHHHHHHHH
Confidence 444555 7788889999999999999999888888889999999999999994 9999999999998653
No 91
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.93 E-value=0.0041 Score=47.24 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHhcCCceeEee-cchhHHHHHHHHHHHHhhcccchhhhhhHHHH
Q 016580 267 CSGIAYYVQGFVSKQKGPVFVTS-FSPLCMIITSALGVIILAELVHLGSILGAILI 321 (387)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~s~-~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li 321 (387)
+..++++++..++|+.+...+=. ...+..+...+.+++++||++|+.+++|.++|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 46888999999999999887744 44588999999999999999999999999886
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.00051 Score=60.30 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHH
Q 016580 192 GTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIA 271 (387)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 271 (387)
.++.++.-++.|+..-....+... .|...+.-..+-+.++.+.+.++ .. +. .....+..-+..|++ -.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT~GALifaiiv~~~-~~-p~----~T~~~~iv~~isG~~-Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTTLGALIFAIIVFLF-VS-PE----LTLTIFIVGFISGAF-WSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhccHHHHHHHHHHhee-ec-Cc----cchhhHHHHHHhhhH-hhhh
Confidence 567888899999987766544332 35665544444455544444433 11 11 122345555556665 7889
Q ss_pred HHHHHHHHhcCCceeEeecch-hHHHHHHHHHHHHhhcccchhhh----hhHHHHHhhhhheeeccC
Q 016580 272 YYVQGFVSKQKGPVFVTSFSP-LCMIITSALGVIILAELVHLGSI----LGAILIVFGLYTVVWGKS 333 (387)
Q Consensus 272 ~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~~~~~e~~t~~~~----~G~~li~~g~~l~~~~~~ 333 (387)
+..++++++..+.+.+.+++. ++-+-+.+++++.|||..+..++ +..++++.|+.+-.+.++
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 999999999999999999887 77888899999999999988863 566788888887665544
No 93
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.92 E-value=0.0067 Score=56.63 Aligned_cols=145 Identities=10% Similarity=0.116 Sum_probs=113.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC---CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC---CCCHHHHHHHH
Q 016580 13 ALSKFKPYLAIISLQFGYAGMYIITMVSLKH---GMSHYVLAVYRHVVATIVLAPFAFVLERKIRP---KLTLPVFLRIM 86 (387)
Q Consensus 13 ~~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~---~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~---~~~~~~~~~~~ 86 (387)
..+...|.++++++++++|...++.|.-..+ ..+--.+-.+-.++..++++|..+....-.++ -.+..+....+
T Consensus 242 a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv 321 (416)
T KOG2765|consen 242 ASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVV 321 (416)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeee
Confidence 3456789999999999999999999997532 24555555666777888888766554432222 12334455567
Q ss_pred HHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhcc
Q 016580 87 ALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYK 163 (387)
Q Consensus 87 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~ 163 (387)
..+.++.+++.++|..|.-.+++-.+++-..++....++.-.++.+.++++. .++|.+..++|-+++...+
T Consensus 322 ~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 322 FNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheeccc
Confidence 7888888999999999999999999998888888888888888888999988 5999999999998887544
No 94
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.62 E-value=0.0054 Score=46.56 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHhHHHHHHHHHHHhhhccCchhHHHh-hchhHHHHHHHHHHHhccccceeeccccchhhHHHH
Q 016580 89 GFLEPVLDQNLYYLGMKYTTATFASAT-VNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAV 151 (387)
Q Consensus 89 g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~ 151 (387)
.+..++.+..++..++++.|.+.+..+ ..+..+.+.+++.+++||+++.. |++|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 444568899999999999999999655 67999999999999999999999 5988875
No 95
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.56 E-value=0.11 Score=48.53 Aligned_cols=143 Identities=14% Similarity=0.078 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCC---CchHHHHHHHHHHHHHHHHHHHHhccC--------cccccccchhhHHH
Q 016580 191 TGTLMLIGSCFGWAGFFILQSFTLKKYP---AELSLSTLICLMGVVEGAAVSLIMERD--------MSAWKIGFDSRLLA 259 (387)
Q Consensus 191 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 259 (387)
.-.+..+...+.++......|...++.+ .|.+..+..-+.-.+++....+..+.. ...+-+..+.+...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 5556666667777777777777665532 255656666666666666655544211 00111111113334
Q ss_pred HHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCC
Q 016580 260 AAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSK 334 (387)
Q Consensus 260 ~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~ 334 (387)
+..-+++ .++-+.+++.++.+.+|++..+...+.++.+.++..++++++++..||...++...|+.++++....
T Consensus 95 ~~vPa~i-YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 95 VSVPALI-YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHHHHHH-HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence 4444444 6777778999999999999999999999999999999999999999999999999999999844433
No 96
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.53 E-value=0.0055 Score=55.27 Aligned_cols=133 Identities=14% Similarity=0.069 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHH
Q 016580 192 GTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIA 271 (387)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 271 (387)
|.+..+.|+++++-+.+=.|+.-.. |++...+++.....+....+.++.+. ..+ .+ ....-|.+ -+.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~--p~f--~p-----~amlgG~l-W~~g 68 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGF--PPF--YP-----WAMLGGAL-WATG 68 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCC--Ccc--ee-----HHHhhhhh-hhcC
Confidence 5677888999999888877765433 35666665555555555544443322 111 01 11112222 4445
Q ss_pred HHHHHHHHhcCCceeEeec-chhHHHHHHHHHHH-Hhhcc-----cchhhhhhHHHHHhhhhheeeccCCCC
Q 016580 272 YYVQGFVSKQKGPVFVTSF-SPLCMIITSALGVI-ILAEL-----VHLGSILGAILIVFGLYTVVWGKSKDP 336 (387)
Q Consensus 272 ~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~~-~~~e~-----~t~~~~~G~~li~~g~~l~~~~~~~~~ 336 (387)
..+-.-.++..+-...-.+ ...+.+.+...+-+ +||+. -++..++|.+++++|..++..-|.+.+
T Consensus 69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 5555555666555433322 23355566665544 45543 345689999999999998887666553
No 97
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.06 E-value=0.022 Score=44.53 Aligned_cols=109 Identities=11% Similarity=0.024 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHHHHHHHH
Q 016580 198 GSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGF 277 (387)
Q Consensus 198 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 277 (387)
+-++.|+..+-+.||-.+..++...- . +..-.. .. ++ .. |-..+ .......+...|++
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~-~~----Ll-----~n--------~~y~i--pf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEI-KF----LL-----LN--------PKYII--PFLLNQSGSVLFFL 60 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHH-HH----HH-----Hh--------HHHHH--HHHHHHHHHHHHHH
Confidence 44688999999999988876532221 1 111111 11 00 01 11111 22235556778889
Q ss_pred HHhcCCceeEeecc-hhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhe
Q 016580 278 VSKQKGPVFVTSFS-PLCMIITSALGVIILAELVHLGSILGAILIVFGLYTV 328 (387)
Q Consensus 278 a~~~~~~~~~s~~~-~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~ 328 (387)
.+.+.+.+.+.++. .+.-+++++.++++.+|..+...++|+++++.|+.+.
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 99999999999985 8999999999988777778888999999999998764
No 98
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.92 E-value=0.038 Score=49.16 Aligned_cols=59 Identities=8% Similarity=0.017 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhh
Q 016580 94 VLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMV 158 (387)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l 158 (387)
.....+....+++.+....++...+.++++.+++.++++|+++.. +++|+.+.+.|+.+
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~l 221 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATFL 221 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeEe
Confidence 777888999999999999999999999999999999999999999 59999999988754
No 99
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.21 Score=41.09 Aligned_cols=137 Identities=12% Similarity=0.024 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHH
Q 016580 18 KPYLAIISLQFGYAGMYIITMVSLKHGM-SHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLD 96 (387)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~k~~~~~~~-~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 96 (387)
..++..+++-.+-.....+.-.. .+.. +|+.-.+..+.++..++..+.+...++......++.-++.+.-|+++ +.+
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL-~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~~ 82 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRL-ARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AIF 82 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hhh
Confidence 45556666666666666555555 3444 59999999999999999888877433322221122233445555555 666
Q ss_pred HHHHHHhhhccCchhHHHh-hchhHHHHHHHHHH-HhccccceeeccccchhhHHHHHhhhhhhh
Q 016580 97 QNLYYLGMKYTTATFASAT-VNILPAVTFILAII-FRLETVNVRRLQSLAKVIGTAVTVAGAMVM 159 (387)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l-~~~~pi~~~~la~~-~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~ 159 (387)
-..-........++....+ ..-+-+...++-.+ +++++ +++.+..+++|+++.++|++++
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence 5555566666666666544 33333334443322 12211 1233444799999999995554
No 100
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.011 Score=54.22 Aligned_cols=128 Identities=25% Similarity=0.263 Sum_probs=94.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh-ccCcccccccchhhHHHHHHhh
Q 016580 186 DSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIM-ERDMSAWKIGFDSRLLAAAYSG 264 (387)
Q Consensus 186 ~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g 264 (387)
..++..|.++++.+.+..+...++.|+..++... . ..-. +...... ....| +.|
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~--------------~~ra~~gg~~yl---~~~~W----w~G 70 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----S--------------GLRAGEGGYGYL---KEPLW----WAG 70 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----h--------------cccccCCCcchh---hhHHH----HHH
Confidence 3556789999999999999999888887766331 0 0000 1111111 11122 346
Q ss_pred hhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCCCCC
Q 016580 265 VVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKDPPS 338 (387)
Q Consensus 265 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~ 338 (387)
++...++-.+.+.+....+++.++++..++.+.+.+++..+++|+++....+|+++.++|..++.....++++.
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 66677788888888899999999999999999999999999999999999999999999977776655444333
No 101
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.39 E-value=0.49 Score=43.33 Aligned_cols=140 Identities=11% Similarity=0.075 Sum_probs=110.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCCHHHHHHHHH
Q 016580 14 LSKFKPYLAIISLQFGYAGMYIITMVSLK-HGMSHYVLAVYRHVVATIVLAPFAFVLERKIRP-----KLTLPVFLRIMA 87 (387)
Q Consensus 14 ~~~~~~~l~~l~~~~~~~~~~~~~k~~~~-~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~ 87 (387)
.+...|+++++...++=|.........+. ..++++.+.+.-.++.++.-....... ...++ +..++.++-++.
T Consensus 168 ~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~q-g~~~~av~F~~~hp~~~~Di~l 246 (327)
T KOG1581|consen 168 ENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQ-GHLLPAVSFIKEHPDVAFDILL 246 (327)
T ss_pred CCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHHcChhHHHHHHH
Confidence 35567888888888888888888777763 368899999988888887776664332 22222 234566777888
Q ss_pred HHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 88 LGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 88 ~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
.+.++ .+++.+.++-++.-++-.-+.+..+--++..+++.+.++.+++.. ||+|+.+.+.|+.+=.+
T Consensus 247 ~s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 247 YSTCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL 313 (327)
T ss_pred HHHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence 88898 899999999999988877788888889999999999999999999 59999999999887654
No 102
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=93.27 E-value=1.2 Score=41.01 Aligned_cols=126 Identities=11% Similarity=0.118 Sum_probs=86.1
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhcc-Ccc-cccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCce
Q 016580 208 ILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMER-DMS-AWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPV 285 (387)
Q Consensus 208 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~ 285 (387)
.+.++..++++-|+-.+.+++.+-.......-...+. .+. .-...+....-.+.-.++ ++++-..+-++++++++.+
T Consensus 33 f~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtlS 111 (349)
T KOG1443|consen 33 FYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTLS 111 (349)
T ss_pred HHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeeee
Confidence 3344444445546777777766555444443333322 111 111112222233344555 4777778889999999999
Q ss_pred eEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCC
Q 016580 286 FVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSK 334 (387)
Q Consensus 286 ~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~ 334 (387)
..++.....+++..+++.++-=|++++.-.+=..+|-.|+++.+++..+
T Consensus 112 lYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq 160 (349)
T KOG1443|consen 112 LYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ 160 (349)
T ss_pred eeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc
Confidence 9999999999999999999989999999999999999999998876543
No 103
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.08 E-value=0.06 Score=45.89 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccC
Q 016580 268 SGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKS 333 (387)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 333 (387)
...+.+.|..++++.+|+.++.+...+-.+..+++|++++++.....++..++.+.|++.+.+...
T Consensus 63 Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 63 WTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred EecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 345788999999999999999999999999999999999999999999999999999999887554
No 104
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.06 E-value=0.24 Score=46.22 Aligned_cols=144 Identities=15% Similarity=0.094 Sum_probs=89.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhc--cC-cccccccchhhHHHHHHhh
Q 016580 188 HFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIME--RD-MSAWKIGFDSRLLAAAYSG 264 (387)
Q Consensus 188 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~g 264 (387)
.-..|+++..+++++-+.+.+-.||. |+.+ .+.......+-..+..|.....- ++ .......+...+......|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 45789999999999999999888875 4433 33333333333334444332221 11 1122222334566666677
Q ss_pred hhhhhHHHHHHHHHHhcCCceeE-eecchhHHHHHHHHHHHHhhc-------ccchhhhhhHHHHHhhhhheeeccCCC
Q 016580 265 VVCSGIAYYVQGFVSKQKGPVFV-TSFSPLCMIITSALGVIILAE-------LVHLGSILGAILIVFGLYTVVWGKSKD 335 (387)
Q Consensus 265 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~~~~~~~~~e-------~~t~~~~~G~~li~~g~~l~~~~~~~~ 335 (387)
++ -.++-..|-.++||.+.+.. ++..-+.-+++.++--++.++ +-....++|.++.++|+.+..+.-..+
T Consensus 81 ~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~K 158 (344)
T PF06379_consen 81 VL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMK 158 (344)
T ss_pred HH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhh
Confidence 76 78888999999999987643 333345556666665554332 223357899999999999988764443
No 105
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=1.3 Score=41.02 Aligned_cols=133 Identities=13% Similarity=0.150 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCchHHH--HHHHHHHHHHHHHHHHHhccCcccccccchhhHHH--HHHhhhhh
Q 016580 192 GTLMLIGSCFGWAGFFILQSFTLKKYPAELSLS--TLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLA--AAYSGVVC 267 (387)
Q Consensus 192 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~ 267 (387)
....++.-+++-.+..+..|.....++-|.... .+|.+.+.+.........--+.++.+.....-|.. +++.+
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~--- 89 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVG--- 89 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHH---
Confidence 344444444555556666777777666444444 48888777666655533222222222222223332 22222
Q ss_pred hhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheee
Q 016580 268 SGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVW 330 (387)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~ 330 (387)
..+.-.+++++.+.....++....|+++.+...++++.+++...+....++++|......
T Consensus 90 ---~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 90 ---MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred ---HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 223335678999999999999999999999999999999999999999999999776653
No 106
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=92.59 E-value=0.67 Score=40.53 Aligned_cols=137 Identities=14% Similarity=0.184 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CCCHHHHHHHHHHHHhH
Q 016580 18 KPYLAIISLQFGYAGMYIITMVSLK-HGMSHYVLAVYRHVVATIVLAPFAFVLERKIRP----KLTLPVFLRIMALGFLE 92 (387)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~k~~~~-~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~ 92 (387)
.|++.+...++.-+..-...|...+ ....-++..++..+.+..+++.+....+.+... .++.....+..+.|++.
T Consensus 155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s 234 (309)
T COG5070 155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS 234 (309)
T ss_pred CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence 4677777777776666666666531 346678889999999999999887776543322 23444555667777777
Q ss_pred HHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 93 PVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
+.-.+|--+.++-++.+..+++..+.-.-.++-+.++++|+.+.. ++.++.+++...++-..
T Consensus 235 -vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~iYav 296 (309)
T COG5070 235 -VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAV 296 (309)
T ss_pred -hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHH
Confidence 666777888899999999999999998889999999999999998 59999998886655544
No 107
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.42 E-value=0.4 Score=42.19 Aligned_cols=134 Identities=12% Similarity=0.056 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCCHHHHHHHHHHHH
Q 016580 18 KPYLAIISLQFGYAGMYIITMVSLKHGM--SHYVLAVYRHVVATIVLAPFAFVLERKIRP-----KLTLPVFLRIMALGF 90 (387)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~k~~~~~~~--~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~ 90 (387)
.|-++++++...=|......... ..+. +.-.+.+...+-+.+.+..-+... ...|. ...+..++-+...++
T Consensus 172 ~GElLL~lSL~mDGlTg~~Qdri-ra~yq~~g~~MM~~~NlwStL~Lg~g~lfT-GElweF~yF~~RhP~~~~~l~l~ai 249 (337)
T KOG1580|consen 172 FGELLLILSLAMDGLTGSIQDRI-RASYQRTGTSMMFYTNLWSTLYLGAGLLFT-GELWEFFYFVQRHPYVFWDLTLLAI 249 (337)
T ss_pred hHHHHHHHHHHhcccchhHHHHH-HHhhccCchhhHHHHHHHHHHHhhhhheeh-hhHHHHHHHHHhccHHHHHHHHHHH
Confidence 56666777766666666665554 2222 223333444444444433222111 11110 001255666778888
Q ss_pred hHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhh
Q 016580 91 LEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMT 160 (387)
Q Consensus 91 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~ 160 (387)
.+ ++++.+.+.-..+-+|-..+++..+--+|+.+.++++++.+++.+ ||+|..+.+.|...=.
T Consensus 250 ~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 250 AS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV 312 (337)
T ss_pred HH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence 88 999999999999999999999999999999999999999999999 5999999999876653
No 108
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.57 E-value=0.5 Score=42.78 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeec
Q 016580 267 CSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWG 331 (387)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 331 (387)
+-..+..+++.++..++++.-.++.-...+++-+++..+++.+++..||+|+..+.+|+..+...
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 36667788889999999999999999999999999999999999999999999999999887755
No 109
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=86.71 E-value=1.1 Score=34.13 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHH
Q 016580 22 AIISLQFGYAGMYIITMVSLKHGMS------HYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVL 95 (387)
Q Consensus 22 ~~l~~~~~~~~~~~~~k~~~~~~~~------p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 95 (387)
-+++..++||...++.|.. +.+++ .-...++|-.... .++|+.+... .++ --
T Consensus 7 ~lvaVgllWG~Tnplirrg-s~g~~~v~~~~~k~~~~lqe~~tl----------------~l~w~Y~iPF----llN-qc 64 (125)
T KOG4831|consen 7 KLVAVGLLWGATNPLIRRG-SLGWDKVKSSSRKIMIALQEMKTL----------------FLNWEYLIPF----LLN-QC 64 (125)
T ss_pred HHHHHHHHHccccHHHHHH-HhhHhhccCchHHHHHHHHHHHHH----------------HHhHHHHHHH----HHH-Hh
Confidence 3566788999999999997 44432 2222222221111 1123322221 222 44
Q ss_pred HHHHHHHhhhccCchhHHHh-hchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhh
Q 016580 96 DQNLYYLGMKYTTATFASAT-VNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMT 160 (387)
Q Consensus 96 ~~~~~~~al~~~~~~~~~~l-~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~ 160 (387)
+..+||.-+.+++.+.+..+ +++.-.|+.+++..+ +|+...+. -+.|..+.++|+.+.+
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~-----a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGL-----ALLGTSLIVFGIWLCI 124 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccce-----eehhhhHHhhhhhhee
Confidence 56778899999999998877 666777888888654 66555443 5889999999987753
No 110
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=85.69 E-value=0.31 Score=43.43 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=82.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHH
Q 016580 217 YPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMI 296 (387)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv 296 (387)
.+.|...++.....-+++-.++.++... .. ...|..-+.++++ -+=++++...|.++++-+.+..+..-..+
T Consensus 45 iN~Pt~QtFl~Y~LLalVY~~~~~fR~~---~~----~~~~~hYilla~~-DVEaNy~vV~AyQyTsmtSi~lLDcwaip 116 (336)
T KOG2766|consen 45 INAPTSQTFLNYVLLALVYGPIMLFRRK---YI----KAKWRHYILLAFV-DVEANYFVVKAYQYTSMTSIMLLDCWAIP 116 (336)
T ss_pred CCCccHHHHHHHHHHHHHHhhHHHhhhH---HH----HHHHHHhhheeEE-eecccEEEeeehhhcchHHHHHHHHhhhH
Confidence 3446766666666555555555543321 11 1234445555664 67778788889999999999999999999
Q ss_pred HHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCC
Q 016580 297 ITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKD 335 (387)
Q Consensus 297 ~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~ 335 (387)
...+++|++++.+..+.++.|.++.+.|+.++....-..
T Consensus 117 ~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a 155 (336)
T KOG2766|consen 117 CVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA 155 (336)
T ss_pred HHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecc
Confidence 999999999999999999999999999999888665443
No 111
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.41 E-value=1.7 Score=39.38 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=77.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhccCcccccccch----hhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchh
Q 016580 218 PAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFD----SRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPL 293 (387)
Q Consensus 218 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~ 293 (387)
+.|.-.+.++.++...+...........+..+..+.. ....-++=+.++ -.......+.++++++.+-.-+-..+
T Consensus 59 d~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvV-fi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 59 DAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVV-FILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhe-eeeehhccceehhhcceEEEEeccch
Confidence 4588889999999988887776554332211111110 111111112221 23344566888999999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhee
Q 016580 294 CMIITSALGVIILAELVHLGSILGAILIVFGLYTVV 329 (387)
Q Consensus 294 ~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~ 329 (387)
..++++++++++++++-+..-..++.+|++|..+-.
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence 999999999999999999999999999999877643
No 112
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=84.21 E-value=45 Score=33.14 Aligned_cols=25 Identities=4% Similarity=0.204 Sum_probs=19.9
Q ss_pred cchhhhhhHHHHHhhhhheeeccCC
Q 016580 310 VHLGSILGAILIVFGLYTVVWGKSK 334 (387)
Q Consensus 310 ~t~~~~~G~~li~~g~~l~~~~~~~ 334 (387)
++..|++.+.++++|++++.+.+++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~ 278 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKG 278 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6888999999999998877654433
No 113
>PRK02237 hypothetical protein; Provisional
Probab=82.75 E-value=2.1 Score=32.96 Aligned_cols=44 Identities=7% Similarity=0.093 Sum_probs=36.5
Q ss_pred cchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccC
Q 016580 290 FSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKS 333 (387)
Q Consensus 290 ~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 333 (387)
+.-.-++.++++++.+-+++|+...++|.++.+.|+.++.+..+
T Consensus 65 YGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 65 YGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred hhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 34445577889999999999999999999999999987766543
No 114
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=82.71 E-value=1.9 Score=33.02 Aligned_cols=41 Identities=10% Similarity=0.206 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccC
Q 016580 293 LCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKS 333 (387)
Q Consensus 293 ~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 333 (387)
.-++.+.++++.+-+++|+...++|.++.+.|+.++.+..|
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 34567889999999999999999999999999998877654
No 115
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=82.55 E-value=3.7 Score=31.39 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCceeEeecch-hHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhhee
Q 016580 271 AYYVQGFVSKQKGPVFVTSFSP-LCMIITSALGVIILAELVHLGSILGAILIVFGLYTVV 329 (387)
Q Consensus 271 ~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~ 329 (387)
+..+|+..+.+.+.+.+..+.+ +...++.+.+..+-.|......++|..++++|+.+..
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 4445666788888877776654 6888889999775555577779999999999998764
No 116
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=81.98 E-value=62 Score=32.84 Aligned_cols=30 Identities=13% Similarity=-0.043 Sum_probs=13.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016580 188 HFFTGTLMLIGSCFGWAGFFILQSFTLKKYP 218 (387)
Q Consensus 188 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~ 218 (387)
....|.+....+.-.-.. .+...++.++.+
T Consensus 253 a~~yGll~a~~gvGai~G-al~~~~l~~~~~ 282 (524)
T PF05977_consen 253 ASGYGLLLAAFGVGAILG-ALLLPRLRRRLS 282 (524)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhcccC
Confidence 345566655443333322 333344445544
No 117
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=79.57 E-value=4.1 Score=37.03 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhc-CCceeEeecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCCCCC
Q 016580 269 GIAYYVQGFVSKQ-KGPVFVTSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKDPPS 338 (387)
Q Consensus 269 ~~~~~~~~~a~~~-~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~ 338 (387)
+....+.+++++. ++...-.++..-.++..++.+|++.+.+.+..|+....++-+|+++.++.+.++-+.
T Consensus 75 F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 75 FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 4456677788776 455566677889999999999999999999999999999999999999887765444
No 118
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=77.85 E-value=43 Score=29.24 Aligned_cols=86 Identities=7% Similarity=0.073 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Q 016580 23 IISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNLYYL 102 (387)
Q Consensus 23 ~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 102 (387)
..+-+++.|....+.+.. .... .+..+..-.+++.+++..+..+..+....+ .+..+++.+..++.. .+.....+.
T Consensus 90 ~~if~~~~gi~~~f~~~~-~~~~-gi~tli~~~i~~G~~~~~~~~~i~~~~~~~-~r~~~~k~~~~~~~~-~~~w~~~~~ 165 (206)
T PF06570_consen 90 FGIFSLLFGIMGFFSPKN-SNQY-GIITLILVSIVGGLVFYFIFKYIYPYKKKK-KRPSWWKYILISVLA-MVLWIVIFV 165 (206)
T ss_pred HHHHHHHHHHHHHHhhcc-cccc-cHHHHHHHHHHHHHHHHHHHHHHhcccccc-cccHHHHHHHHHHHH-HHHHHHHHH
Confidence 334445555555555533 1222 222223333444444444433322211122 223344444444444 344444444
Q ss_pred hhhccCchhH
Q 016580 103 GMKYTTATFA 112 (387)
Q Consensus 103 al~~~~~~~~ 112 (387)
.....|+...
T Consensus 166 ~~~~lp~~in 175 (206)
T PF06570_consen 166 LTSFLPPVIN 175 (206)
T ss_pred HHHHccccCC
Confidence 5555665543
No 119
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=76.89 E-value=0.78 Score=41.40 Aligned_cols=14 Identities=29% Similarity=0.747 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHH
Q 016580 187 SHFFTGTLMLIGSC 200 (387)
Q Consensus 187 ~~~~~G~~~~l~a~ 200 (387)
+..++|+++.+++.
T Consensus 103 Q~LF~Gi~~l~l~~ 116 (381)
T PF05297_consen 103 QTLFVGIVILFLCC 116 (381)
T ss_dssp --------------
T ss_pred cHHHHHHHHHHHHH
Confidence 44566766655443
No 120
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=76.10 E-value=1.3 Score=40.75 Aligned_cols=130 Identities=11% Similarity=0.049 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH-hcc-------Cc---ccccccchhhHHHHHHhhh
Q 016580 197 IGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLI-MER-------DM---SAWKIGFDSRLLAAAYSGV 265 (387)
Q Consensus 197 l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~-------~~---~~~~~~~~~~~~~~~~~g~ 265 (387)
+++.+||+-.-..+|...++... ....+|=+..+.++...+..+ .+. .+ .+....+...+.....-|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 35567777777776666554331 223444454554443333322 111 01 1111112223333333344
Q ss_pred hhhhHHHHHHHHHHhcCCceeEeecch-hHHHHHHHHHHHHhhcccc--hhhhhhHHHHHhhhhhee
Q 016580 266 VCSGIAYYVQGFVSKQKGPVFVTSFSP-LCMIITSALGVIILAELVH--LGSILGAILIVFGLYTVV 329 (387)
Q Consensus 266 ~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~~~~~e~~t--~~~~~G~~li~~g~~l~~ 329 (387)
+ --+++++..+++...+.+.+-++.. +..++++++.|+ +..+.+ ..-+.|.+++++++++-.
T Consensus 81 v-fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 81 V-FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred h-hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence 3 5678888888888877665555443 444455666654 344443 245668888888777654
No 121
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=70.13 E-value=5.8 Score=32.24 Aligned_cols=16 Identities=25% Similarity=0.669 Sum_probs=9.0
Q ss_pred hhhhHHHHHhhhhhee
Q 016580 314 SILGAILIVFGLYTVV 329 (387)
Q Consensus 314 ~~~G~~li~~g~~l~~ 329 (387)
.++|..+++.|++...
T Consensus 89 ~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 89 IIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666655444
No 122
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=69.59 E-value=2.1 Score=39.37 Aligned_cols=111 Identities=12% Similarity=0.034 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCC-------------CCCCHHHHHHHHHHH
Q 016580 23 IISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIR-------------PKLTLPVFLRIMALG 89 (387)
Q Consensus 23 ~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~g 89 (387)
|+++.+|||+.....|++ .+...-.+...+-+.++.++...+..+.-.... .+.++......++-|
T Consensus 1 M~itmlcwGSW~nt~kL~-~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLA-ERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHH-HhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 356789999999999999 454444445667777776666555433322111 123566666667777
Q ss_pred HhHHHHHHHHHHHhhhccCchhHHHhhch-hHHHHHHHHHHHhccccc
Q 016580 90 FLEPVLDQNLYYLGMKYTTATFASATVNI-LPAVTFILAIIFRLETVN 136 (387)
Q Consensus 90 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~-~pi~~~~la~~~l~e~~~ 136 (387)
++. .+++++..+|+.+...+.+-++... .-+...++- .++..|.+
T Consensus 80 vvf-nlgNillq~aia~aGmSVafpvg~glalVlGv~~N-Yfld~~~n 125 (336)
T PF07168_consen 80 VVF-NLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLN-YFLDPKIN 125 (336)
T ss_pred Hhh-hhHHHHHHHHHHHhcceeeeeeecceEEEEeeeee-eeccCCCC
Confidence 776 8999999999999999988777433 333333333 34445554
No 123
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=66.81 E-value=7 Score=29.96 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=26.0
Q ss_pred HHHHHHHhhcccchhhhhhHHHHHhhhhhe
Q 016580 299 SALGVIILAELVHLGSILGAILIVFGLYTV 328 (387)
Q Consensus 299 ~~~~~~~~~e~~t~~~~~G~~li~~g~~l~ 328 (387)
..++.++++|++++....|.++++++++.+
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456778899999999999999999987764
No 124
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=65.31 E-value=22 Score=27.23 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=38.5
Q ss_pred eecchhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccC
Q 016580 288 TSFSPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKS 333 (387)
Q Consensus 288 s~~~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 333 (387)
+.+.-.-++.+.++.+.+-+.+|+...++|..+.++|+.++.+..+
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 3455667788899999999999999999999999999888777654
No 125
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=64.37 E-value=64 Score=24.85 Aligned_cols=33 Identities=6% Similarity=0.061 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhh
Q 016580 121 AVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVM 159 (387)
Q Consensus 121 i~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~ 159 (387)
..-..++.+++||++++. .+.|..+.+.+++++
T Consensus 74 ~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~fi 106 (108)
T PF04342_consen 74 VVFAPFSVFYLGEPLKWN------YLWAFLCILGAVYFI 106 (108)
T ss_pred heeHHHHHHHhCCCccHH------HHHHHHHHHHhhhee
Confidence 345567888999999998 477766666555543
No 126
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=63.57 E-value=1e+02 Score=26.84 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=21.1
Q ss_pred HHHHHHHhhcccchhhhhhHHHHHh--hhhheee
Q 016580 299 SALGVIILAELVHLGSILGAILIVF--GLYTVVW 330 (387)
Q Consensus 299 ~~~~~~~~~e~~t~~~~~G~~li~~--g~~l~~~ 330 (387)
-.+|..++.+-.=+...+|..+.+. |.+....
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~ 166 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLAR 166 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4457777777777778888777654 4444443
No 127
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=60.10 E-value=58 Score=29.81 Aligned_cols=139 Identities=13% Similarity=0.069 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHHHHHHHHHHhhhcC--C---CCCCHHHHHHHHHHHHh
Q 016580 18 KPYLAIISLQFGYAGMYIITMVSLK-HGMSHYVLAVYRHVVATIVLAPFAFVLERKI--R---PKLTLPVFLRIMALGFL 91 (387)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~k~~~~-~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~--~---~~~~~~~~~~~~~~g~~ 91 (387)
.|+...-.+.+.=+.-.-+....+. ..-+..+++++-+.++..+++..+.....-. | .+.+++.+...++.+..
T Consensus 190 ~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~ 269 (367)
T KOG1582|consen 190 IGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLA 269 (367)
T ss_pred eeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHH
Confidence 3444444444444444444444432 2345677888888888888877766542211 1 12355666666666666
Q ss_pred HHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhcc
Q 016580 92 EPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYK 163 (387)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~ 163 (387)
+ .++......=++.-.+..++.+...--..|.+++++++..++|.. -..+..+.+.|+++=...+
T Consensus 270 g-ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 270 G-YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred h-HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcccC
Confidence 5 444444444455566666777777777889999999999999987 4778888999999876544
No 128
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=57.36 E-value=4.4 Score=31.96 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=13.4
Q ss_pred HHhhcccchhhh----hhHHHHHhhhhheee
Q 016580 304 IILAELVHLGSI----LGAILIVFGLYTVVW 330 (387)
Q Consensus 304 ~~~~e~~t~~~~----~G~~li~~g~~l~~~ 330 (387)
++--|-+|++.+ +.++.+++|++++.+
T Consensus 26 ~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgr 56 (125)
T PF15048_consen 26 FFRVEDATPWNYSILALSFVVLVISFFLLGR 56 (125)
T ss_pred heecCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 333455665532 344445556655543
No 129
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=53.85 E-value=72 Score=24.47 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=32.1
Q ss_pred hchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhc
Q 016580 116 VNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLY 162 (387)
Q Consensus 116 ~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~ 162 (387)
-....+...+..++..|.++++-+ ++|..++++|+.++.+.
T Consensus 65 GGvyI~~sL~W~~~Vdg~~pdr~D------~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 65 GGVYIAASLAWLWVVDGVRPDRYD------WIGAAICLAGVAVILFG 105 (109)
T ss_pred cchHHHHHHHHHHHHcCcCCcHHH------hhhHHHHHhceeeeEeC
Confidence 444555566677788899999986 99999999998888643
No 130
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=51.99 E-value=3.3e+02 Score=29.19 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=30.1
Q ss_pred chhHHHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhh
Q 016580 109 ATFASATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVM 159 (387)
Q Consensus 109 ~~~~~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~ 159 (387)
.+.+.++..+.|+-.+.++.+...++.+.. .+.+.+..++|.+.+
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~------~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDK------AFFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccch------HHHHHHHHHHHHHHh
Confidence 356677888999999988888766664322 155555566666554
No 131
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.94 E-value=30 Score=26.10 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=27.0
Q ss_pred HHHHHHHhhcccchhhhhhHHHHHhhhhhee
Q 016580 299 SALGVIILAELVHLGSILGAILIVFGLYTVV 329 (387)
Q Consensus 299 ~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~ 329 (387)
+.++.+.++|++.+..+.|..+++.|+.++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 4568888999999999999999999987654
No 132
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=48.65 E-value=1.2e+02 Score=23.34 Aligned_cols=52 Identities=10% Similarity=0.143 Sum_probs=38.4
Q ss_pred hhccCchhH-HHhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 104 MKYTTATFA-SATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 104 l~~~~~~~~-~~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
++-.+.+.+ +.--....+...+..+.+.|++++..+ ++|..++++|+.++.+
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D------~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWD------WIGAAICLVGVAIILF 103 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHH------HHhHHHHHHhHHheEe
Confidence 343444444 333455666677778889999999996 9999999999999864
No 133
>PRK10666 ammonium transporter; Provisional
Probab=42.62 E-value=3.5e+02 Score=26.74 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=13.1
Q ss_pred HHHHHHhHHHHHHHHHHHhhhc
Q 016580 85 IMALGFLEPVLDQNLYYLGMKY 106 (387)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~al~~ 106 (387)
+..+|.+..-.++..|+-+-..
T Consensus 222 ~~~lGt~lLw~GW~gFN~Gs~~ 243 (428)
T PRK10666 222 MVFTGTAILYIGWFGFNAGSAG 243 (428)
T ss_pred HHHHHHHHHHHHHHhccchhhc
Confidence 3455655546677666666554
No 134
>PRK02237 hypothetical protein; Provisional
Probab=40.47 E-value=1.7e+02 Score=22.65 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=35.1
Q ss_pred chhHH-HhhchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 109 ATFAS-ATVNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 109 ~~~~~-~l~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
.+.+. .--....+...+..+.+.+++++..+ ++|..++++|+.++.+
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D------~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWD------WIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhH------HHhHHHHHHhHHHhee
Confidence 34443 33444555566778888999999996 9999999999988854
No 135
>PF15102 TMEM154: TMEM154 protein family
Probab=38.03 E-value=49 Score=27.13 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=12.4
Q ss_pred hhHHHHHhhhhheeeccCCCCCC
Q 016580 316 LGAILIVFGLYTVVWGKSKDPPS 338 (387)
Q Consensus 316 ~G~~li~~g~~l~~~~~~~~~~~ 338 (387)
++++|++..++++.+.|||+.|.
T Consensus 67 LLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 67 LLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHheeEEeecccCC
Confidence 44455555566666665554433
No 136
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.57 E-value=14 Score=29.34 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=7.8
Q ss_pred hhHHHHHhhhhheeeccCC
Q 016580 316 LGAILIVFGLYTVVWGKSK 334 (387)
Q Consensus 316 ~G~~li~~g~~l~~~~~~~ 334 (387)
+|++++++.+.++.++++|
T Consensus 75 aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4444444444444333333
No 137
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=37.12 E-value=4.1e+02 Score=25.99 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=23.4
Q ss_pred hchhHHHH-HHHHHHHh-ccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 116 VNILPAVT-FILAIIFR-LETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 116 ~~~~pi~~-~~la~~~l-~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
....|-+. =+++.++. +-+.+.| -++..++..+|.+++..
T Consensus 67 adi~P~l~~Kl~aP~fi~~v~y~~R------i~~~~~l~~~g~l~va~ 108 (402)
T PF02487_consen 67 ADILPSLLVKLIAPFFIHRVPYWIR------ILICVALSAAGMLLVAF 108 (402)
T ss_pred HHHHHHHHHHHHhHhhhhhccchHH------HHHHHHHHHHHHhheee
Confidence 34445443 34444444 4455555 37777788888888864
No 138
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=35.78 E-value=4.7e+02 Score=26.31 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=9.5
Q ss_pred CchHHHHHHHHHHHHHH
Q 016580 219 AELSLSTLICLMGVVEG 235 (387)
Q Consensus 219 ~~~~~~~~~~~~~~v~~ 235 (387)
.|......+..+..++.
T Consensus 330 ~P~~a~~~~~~i~~l~~ 346 (507)
T TIGR00910 330 VPVPLVIIQGIITSIAG 346 (507)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 36666666655555433
No 139
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=33.67 E-value=1.9e+02 Score=23.76 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=25.7
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016580 185 SDSHFFTGTLMLIGSCFGWAGFFILQSFTLKK 216 (387)
Q Consensus 185 ~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~ 216 (387)
.+.....+.+..+++++.|.-|...+||..+.
T Consensus 115 ~d~~~i~~l~~~li~a~IwipYf~~S~RVK~T 146 (149)
T PF10754_consen 115 IDAEAIRELLRSLIAAAIWIPYFLRSKRVKNT 146 (149)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Confidence 34556788999999999999999998886543
No 140
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=33.51 E-value=3.5e+02 Score=24.18 Aligned_cols=112 Identities=8% Similarity=0.006 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHH-HHhccccceeeccccchhhHHHHHhhhh
Q 016580 78 TLPVFLRIMALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAI-IFRLETVNVRRLQSLAKVIGTAVTVAGA 156 (387)
Q Consensus 78 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~-~~l~e~~~~~~~~~~~~~~g~~~~~~Gv 156 (387)
+..........++.+..++..+..|+-..-+......+..+.-+|...-.. ..-|+.++..+ +. +.+++.|+
T Consensus 84 ~~~~~~~~~~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~g~~tk~Dls~l~-----~~--l~~aligL 156 (233)
T COG0670 84 PTALILFFVYTALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGYTTKRDLSSLG-----SF--LFMALIGL 156 (233)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HH--HHHHHHHH
Confidence 445455555555666666776666666554433444544444444332222 22344455442 33 33344444
Q ss_pred hhhhhccCccccccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016580 157 MVMTLYKGPIINFTSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKK 216 (387)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~ 216 (387)
++...-+ -.-...........++.+.++.+..+..+..++
T Consensus 157 iiasvvn--------------------~Fl~s~~l~~~IS~lgvlifsgli~yDtq~I~~ 196 (233)
T COG0670 157 IIASLVN--------------------IFLGSSALHLAISVLGVLIFSGLIAYDTQNIKR 196 (233)
T ss_pred HHHHHHH--------------------HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333211 011222567788888889999998888777776
No 141
>COG2245 Predicted membrane protein [Function unknown]
Probab=33.35 E-value=3e+02 Score=23.31 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC
Q 016580 197 IGSCFGWAGFFILQSFTLKKYPA 219 (387)
Q Consensus 197 l~a~~~~a~~~v~~~~~~~~~~~ 219 (387)
++|-..+-+..+..+.+.+.+.+
T Consensus 29 ilSlVG~VLvlval~~iS~~~ge 51 (182)
T COG2245 29 ILSLVGLVLVLVALYMISKQVGE 51 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCh
Confidence 55566666666666666665553
No 142
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=33.18 E-value=4.9e+02 Score=25.71 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=19.7
Q ss_pred ccchhhhhhHHHHHhhhhheeeccCC
Q 016580 309 LVHLGSILGAILIVFGLYTVVWGKSK 334 (387)
Q Consensus 309 ~~t~~~~~G~~li~~g~~l~~~~~~~ 334 (387)
.-+...++|.++.++.+.....+...
T Consensus 282 ~~~~~~iig~i~~~~~v~yss~ra~~ 307 (429)
T PF03348_consen 282 WNTWQSIIGLIFTFVSVLYSSFRASS 307 (429)
T ss_pred cchHHHHHHHHHHHHHHHHhcccccc
Confidence 35667789999999998877765543
No 143
>PF15345 TMEM51: Transmembrane protein 51
Probab=32.32 E-value=17 Score=32.13 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=17.7
Q ss_pred hhhHHHHHhhhhheeeccCCCCCC
Q 016580 315 ILGAILIVFGLYTVVWGKSKDPPS 338 (387)
Q Consensus 315 ~~G~~li~~g~~l~~~~~~~~~~~ 338 (387)
..|++|.++.+|+-.+.|+|+...
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~rq~ 89 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRRQG 89 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 358888889999988877664433
No 144
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=31.67 E-value=3.8e+02 Score=24.20 Aligned_cols=38 Identities=13% Similarity=-0.105 Sum_probs=20.9
Q ss_pred HHHHhcCCceeEeecchhHHHHHHHHHHHHhhcccchh
Q 016580 276 GFVSKQKGPVFVTSFSPLCMIITSALGVIILAELVHLG 313 (387)
Q Consensus 276 ~~a~~~~~~~~~s~~~~~~pv~~~~~~~~~~~e~~t~~ 313 (387)
....++.++........++=.+-++-..+++.-.-...
T Consensus 113 ~vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~ 150 (249)
T PF10225_consen 113 AVCYRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPE 150 (249)
T ss_pred HhhcccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 34445677776666666555555555555554443333
No 145
>PRK03893 putative sialic acid transporter; Provisional
Probab=31.19 E-value=5.2e+02 Score=25.37 Aligned_cols=6 Identities=17% Similarity=0.445 Sum_probs=2.6
Q ss_pred CCChHH
Q 016580 44 GMSHYV 49 (387)
Q Consensus 44 ~~~p~~ 49 (387)
+.++.+
T Consensus 51 ~~s~~~ 56 (496)
T PRK03893 51 GLTTVQ 56 (496)
T ss_pred CCCHHH
Confidence 344443
No 146
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=30.53 E-value=3.2e+02 Score=27.01 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=7.5
Q ss_pred hhhHHHHHhhhhhee
Q 016580 315 ILGAILIVFGLYTVV 329 (387)
Q Consensus 315 ~~G~~li~~g~~l~~ 329 (387)
+.|+++++.+++...
T Consensus 417 ~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 417 LMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555544433
No 147
>PHA03049 IMV membrane protein; Provisional
Probab=30.38 E-value=29 Score=24.03 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=15.5
Q ss_pred hhhhHHHHHhhhhheeeccCCC
Q 016580 314 SILGAILIVFGLYTVVWGKSKD 335 (387)
Q Consensus 314 ~~~G~~li~~g~~l~~~~~~~~ 335 (387)
.++++++++.|++++..-.+++
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4677888888888877555443
No 148
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=30.33 E-value=2e+02 Score=23.95 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=50.3
Q ss_pred hhHHHHHhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC--CchHH
Q 016580 146 VIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYP--AELSL 223 (387)
Q Consensus 146 ~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~--~~~~~ 223 (387)
-++++.+++|.=++...+--+ +......+..|..+.+.+.+..+......--+.+++- -.+++
T Consensus 92 slAVV~AIFGLElLmvSQvcE---------------d~~SrrKWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFTL 156 (184)
T PF15108_consen 92 SLAVVVAIFGLELLMVSQVCE---------------DAHSRRKWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFTL 156 (184)
T ss_pred HHHHHHHHHhHHHHHHHHHHh---------------cchhhhhhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhHH
Confidence 466777778866665443211 1234566778988888888777665555444555433 24888
Q ss_pred HHHHHHHHHHHHHHHH
Q 016580 224 STLICLMGVVEGAAVS 239 (387)
Q Consensus 224 ~~~~~~~~~v~~~~~~ 239 (387)
++|.-+.+..++..-+
T Consensus 157 ~fWCeFtAsFLfFLN~ 172 (184)
T PF15108_consen 157 MFWCEFTASFLFFLNG 172 (184)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9998888876665544
No 149
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=30.32 E-value=3.7e+02 Score=23.37 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=7.6
Q ss_pred hhHHHHHhhhhhhh
Q 016580 146 VIGTAVTVAGAMVM 159 (387)
Q Consensus 146 ~~g~~~~~~Gv~l~ 159 (387)
++++...+.|+...
T Consensus 89 ~~~if~~~~gi~~~ 102 (206)
T PF06570_consen 89 FFGIFSLLFGIMGF 102 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555565554
No 150
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=29.61 E-value=1.6e+02 Score=19.65 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=33.1
Q ss_pred hhhHHHHHhhhhhhhhhccCccccccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016580 145 KVIGTAVTVAGAMVMTLYKGPIINFTSGGAGSHHGSSVDSSDSHFFTGTLMLIGSCFGWAGFFILQSFTLKK 216 (387)
Q Consensus 145 ~~~g~~~~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~ 216 (387)
..+|..+.++|++++.+. | .|.+..+++-...|......|+..++
T Consensus 5 ~v~G~~lv~~Gii~~~lP-G--------------------------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLP-G--------------------------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCC-C--------------------------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 378889999999988632 1 26677777778888887777776654
No 151
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=29.43 E-value=33 Score=23.92 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=16.0
Q ss_pred hhhhHHHHHhhhhheeeccCCC
Q 016580 314 SILGAILIVFGLYTVVWGKSKD 335 (387)
Q Consensus 314 ~~~G~~li~~g~~l~~~~~~~~ 335 (387)
-++++++++.|++++..-.+++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4678888888888887555443
No 152
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.39 E-value=45 Score=20.77 Aligned_cols=19 Identities=37% Similarity=0.877 Sum_probs=11.4
Q ss_pred hhHHHHHhhhhheeeccCC
Q 016580 316 LGAILIVFGLYTVVWGKSK 334 (387)
Q Consensus 316 ~G~~li~~g~~l~~~~~~~ 334 (387)
+|.++++++++++.|.+++
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 4556666666666555543
No 153
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=28.09 E-value=3.7e+02 Score=22.79 Aligned_cols=32 Identities=16% Similarity=0.069 Sum_probs=16.2
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH
Q 016580 209 LQSFTLKKYPAELSLSTLICLMGVVEGAAVSLI 241 (387)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 241 (387)
..|+..+|.+ -.....+......+......++
T Consensus 120 ~~~~~~~R~~-~i~ag~~v~l~~~~~~l~~~l~ 151 (194)
T PF07698_consen 120 SVRRIRSRSD-IIKAGLLVGLVNALMILALGLI 151 (194)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666643 3444445555555555554443
No 154
>TIGR00893 2A0114 d-galactonate transporter.
Probab=27.40 E-value=4.9e+02 Score=23.94 Aligned_cols=15 Identities=7% Similarity=0.005 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhccCC
Q 016580 204 AGFFILQSFTLKKYP 218 (387)
Q Consensus 204 a~~~v~~~~~~~~~~ 218 (387)
.+......++.++++
T Consensus 43 ~~~~~~~g~l~d~~g 57 (399)
T TIGR00893 43 VVGQFPGGWLLDRFG 57 (399)
T ss_pred HHHHHhHHHHHHhcC
Confidence 333333344444443
No 155
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.34 E-value=2.8e+02 Score=21.09 Aligned_cols=31 Identities=3% Similarity=0.091 Sum_probs=23.5
Q ss_pred HHHHHHHHhccccceeeccccchhhHHHHHhhhhhhh
Q 016580 123 TFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVM 159 (387)
Q Consensus 123 ~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~ 159 (387)
-..++.+++||++++. .+.+..+...|+.++
T Consensus 83 Fv~Fsvfyl~epl~~~------~l~a~~~i~gav~fi 113 (116)
T COG3169 83 FVPFSVFYLKEPLRWN------YLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHcCcchHH------HHHHHHHHHHHHHHh
Confidence 3456888999999999 477777776677665
No 156
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=27.22 E-value=5.4e+02 Score=24.29 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhcccc
Q 016580 120 PAVTFILAIIFRLETV 135 (387)
Q Consensus 120 pi~~~~la~~~l~e~~ 135 (387)
.+...++...+.+|+.
T Consensus 167 ~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 167 GILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 3344444445555543
No 157
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=26.36 E-value=5.7e+02 Score=24.33 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=10.1
Q ss_pred hhhhhhHHHHHhhhhhe
Q 016580 312 LGSILGAILIVFGLYTV 328 (387)
Q Consensus 312 ~~~~~G~~li~~g~~l~ 328 (387)
....++.++.+.++++.
T Consensus 370 ~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 370 GFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33566666666665554
No 158
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.87 E-value=21 Score=29.07 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=17.8
Q ss_pred hcCCceeEeecchhHHHHHHHHHHHH
Q 016580 280 KQKGPVFVTSFSPLCMIITSALGVII 305 (387)
Q Consensus 280 ~~~~~~~~s~~~~~~pv~~~~~~~~~ 305 (387)
..-+....+.+.|+.|+++++++.++
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677788888888777665
No 159
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.65 E-value=1.1e+02 Score=23.73 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHhhcc-cchhhhhhHHHHHh
Q 016580 293 LCMIITSALGVIILAEL-VHLGSILGAILIVF 323 (387)
Q Consensus 293 ~~pv~~~~~~~~~~~e~-~t~~~~~G~~li~~ 323 (387)
...++++.++|++-+-. -+++.++...++=+
T Consensus 54 sGilVGa~iG~llD~~agTsPwglIv~lllGf 85 (116)
T COG5336 54 SGILVGAGIGWLLDKFAGTSPWGLIVFLLLGF 85 (116)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 34567777777763221 23444444444433
No 160
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=25.42 E-value=8.6e+02 Score=26.12 Aligned_cols=39 Identities=8% Similarity=-0.136 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 016580 15 SKFKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRH 55 (387)
Q Consensus 15 ~~~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~ 55 (387)
+-+.++.+..+++++|.+.+.+-... +.+-++...+.-.
T Consensus 80 RfR~~L~YI~~~~l~W~lYfav~~rs--~fi~~~~~slc~l 118 (1318)
T KOG3618|consen 80 RFRYALFYIGFACLLWSLYFAVHMRS--RFIVMVAPSLCFL 118 (1318)
T ss_pred HHHHHHHHHHHHHHHHHHHheeccCc--eeeeehHHHHHHH
Confidence 34568999999999999998776554 3455555444433
No 161
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=25.34 E-value=5.3e+02 Score=23.61 Aligned_cols=109 Identities=16% Similarity=0.060 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHHHHHHHHHHhh--hcCCC---CCCHHHHHHHHHHHH
Q 016580 18 KPYLAIISLQFGYAGMYIITMVSLKH--GMSHYVLAVYRHVVATIVLAPFAFVLE--RKIRP---KLTLPVFLRIMALGF 90 (387)
Q Consensus 18 ~~~l~~l~~~~~~~~~~~~~k~~~~~--~~~p~~~~~~r~~~~~l~l~~~~~~~~--~~~~~---~~~~~~~~~~~~~g~ 90 (387)
+|.+++++ .++++...+.... +. ++.|...+.+-.+....+...++..++ |+... ....++|..-..++.
T Consensus 96 ng~ll~ll--~lyAlinAl~~l~-dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~ 172 (314)
T COG3965 96 NGTLLALL--CLYALINALGSLL-DGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSA 172 (314)
T ss_pred ccHHHHHH--HHHHHHHHHHHHh-cCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHH
Confidence 44444443 4566666666665 43 466777777766666666665554443 22222 234555555444333
Q ss_pred hHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhcc
Q 016580 91 LEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLE 133 (387)
Q Consensus 91 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e 133 (387)
.. ...|..|.-......+-...+.-|.+.++.+.++-.-
T Consensus 173 al----~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~Ipl 211 (314)
T COG3965 173 AL----FVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPL 211 (314)
T ss_pred HH----HHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeec
Confidence 32 2222233333334445566788999999988877433
No 162
>PF09529 Intg_mem_TP0381: Integral membrane protein (intg_mem_TP0381); InterPro: IPR011737 This entry represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=24.78 E-value=4.8e+02 Score=22.87 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhccCchhHHHhhchhHHH-HHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhc
Q 016580 94 VLDQNLYYLGMKYTTATFASATVNILPAV-TFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLY 162 (387)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~-~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~ 162 (387)
-+....++....+.+..+.-++.-|.-.. ...+..+..+++.- +... ..++.|..+....
T Consensus 52 ~i~~~~~~~~~~~~~~~e~LPLhlC~i~~~~~~l~l~~k~~~~~--------~~~~-~~gi~Gai~Ali~ 112 (225)
T PF09529_consen 52 EIILYIWYIYIGYFSLWESLPLHLCRIAMILAALALITKKKKLF--------EYFY-FWGIIGAIQALIT 112 (225)
T ss_pred HHHHHHHHHhcCCCchhccCCchhhhHHHHHHHHHHHcCcHHHH--------HHHH-HHHHHHHHHHeee
Confidence 45555666666777777777775554333 33444444333322 2433 4566555544333
No 163
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=24.65 E-value=44 Score=23.98 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=4.2
Q ss_pred hhhHHHHHhh
Q 016580 315 ILGAILIVFG 324 (387)
Q Consensus 315 ~~G~~li~~g 324 (387)
++|+.++++.
T Consensus 9 i~Gm~iVF~~ 18 (79)
T PF04277_consen 9 IIGMGIVFLV 18 (79)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 164
>COG2323 Predicted membrane protein [Function unknown]
Probab=24.64 E-value=4.1e+02 Score=23.62 Aligned_cols=79 Identities=11% Similarity=0.209 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHH
Q 016580 48 YVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILA 127 (387)
Q Consensus 48 ~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la 127 (387)
+.-.++|.++..++++.+..+..|+.....+.-+....+.+|-+. ....+... .+.....+...+..++..+++
T Consensus 4 ~~~~~ir~vi~~~~l~l~~ri~Gkr~isqmt~fd~vv~i~iG~i~---~~~i~~~~---i~~~~~~~~~~~~~~l~~~l~ 77 (224)
T COG2323 4 LLEVAIRSVIGYLILLLLLRIMGKRSISQMTIFDFVVMITLGSIA---GDAIFDDD---VSILPTIIAILTLALLQILLS 77 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCccccCCHHHHHHHHHHHHHH---HHHhhCCC---CchHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999988888777776666655555544433 33322222 333333444444555555556
Q ss_pred HHHhc
Q 016580 128 IIFRL 132 (387)
Q Consensus 128 ~~~l~ 132 (387)
++-.|
T Consensus 78 ~l~~k 82 (224)
T COG2323 78 YLSLK 82 (224)
T ss_pred HHHhc
Confidence 55443
No 165
>KOG4320 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.39 E-value=5.2e+02 Score=23.23 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=28.6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 016580 185 SDSHFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVE 234 (387)
Q Consensus 185 ~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 234 (387)
...-...|..+++.++..|....-...+...-.........++..++.+.
T Consensus 115 i~~VH~~ga~laF~~g~LY~~~Qa~LSy~~~p~~~~~~v~~iR~~lavi~ 164 (253)
T KOG4320|consen 115 IRIVHDIGAVLAFGAGLLYMWFQAILSYQRDPNIPTLIVFYIRLVLAVIC 164 (253)
T ss_pred chhhhhhhhhHHhcchHHHHHHHHHHHhccCCCcccchhhHHHHHHHHHH
Confidence 34445678888888888877655444432222222355555666665554
No 166
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=24.25 E-value=1.5e+02 Score=23.00 Aligned_cols=25 Identities=16% Similarity=0.596 Sum_probs=16.9
Q ss_pred chhhhhhHHHHHhhhhheeeccCCC
Q 016580 311 HLGSILGAILIVFGLYTVVWGKSKD 335 (387)
Q Consensus 311 t~~~~~G~~li~~g~~l~~~~~~~~ 335 (387)
....++...+|++-++++.+.+.++
T Consensus 61 gagsfiatliillviffviy~re~~ 85 (150)
T PF06084_consen 61 GAGSFIATLIILLVIFFVIYSREEE 85 (150)
T ss_pred ccchHHHHHHHHHHHhheeEecccc
Confidence 3456777777887777777765443
No 167
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=24.24 E-value=5.6e+02 Score=23.51 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHH
Q 016580 17 FKPYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLD 96 (387)
Q Consensus 17 ~~~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 96 (387)
++-.+..+++++--+...+..+...++.+-....+.+-..+..++++..=...++.+.+..+.-.++-.+.+|+.. +++
T Consensus 84 ~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~~~~~va~~lIv~gi~li~~e~~~~~~~~~~~~~l~~~da~~IGlaQ-~lA 162 (270)
T COG1968 84 FRLWLKILVATIPAVVLGLLFKDFIKSHLFNPRVVAIALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQ-CLA 162 (270)
T ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhccccCcCChhhCCHHHHHHHHHHH-HHH
Confidence 3345666666666666666666643444433444455555555554444322221112222223355556666665 443
Q ss_pred HHHHHHhhhccCchhHH
Q 016580 97 QNLYYLGMKYTTATFAS 113 (387)
Q Consensus 97 ~~~~~~al~~~~~~~~~ 113 (387)
..=+.+...++..+
T Consensus 163 ---l~PG~SRSGaTI~~ 176 (270)
T COG1968 163 ---LIPGTSRSGATISG 176 (270)
T ss_pred ---HcCCCCccHHHHHH
Confidence 33566666655443
No 168
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=23.66 E-value=2.6e+02 Score=20.20 Aligned_cols=48 Identities=2% Similarity=0.100 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 016580 20 YLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFV 68 (387)
Q Consensus 20 ~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~ 68 (387)
.-+.+++.+.|..-+.+.+-- ...+..+.+.+.-+.++.++++=+..+
T Consensus 23 ~QLtvLs~~~w~iWw~~f~d~-P~sieSIALl~~~~AfsgLL~lHLvv~ 70 (77)
T PF12292_consen 23 WQLTVLSVLSWPIWWFFFRDT-PTSIESIALLFFCFAFSGLLFLHLVVF 70 (77)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888887776 456778888888888888777655433
No 169
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=23.52 E-value=5.5e+02 Score=23.16 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=25.1
Q ss_pred CceeEeecchhHHHHHHHHHHHHhhcccc-----hhhhhhHHHHHhhhhhe
Q 016580 283 GPVFVTSFSPLCMIITSALGVIILAELVH-----LGSILGAILIVFGLYTV 328 (387)
Q Consensus 283 ~~~~~s~~~~~~pv~~~~~~~~~~~e~~t-----~~~~~G~~li~~g~~l~ 328 (387)
..++-..+...--.+.....|.++|-.++ ....+|..+-+.=+.++
T Consensus 154 kSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 154 KSVEYMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILY 204 (243)
T ss_pred CceeeechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHh
Confidence 55555555554444445555655554432 23356777766666666
No 170
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=23.48 E-value=1.1e+02 Score=18.55 Aligned_cols=20 Identities=20% Similarity=0.106 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 016580 191 TGTLMLIGSCFGWAGFFILQ 210 (387)
Q Consensus 191 ~G~~~~l~a~~~~a~~~v~~ 210 (387)
.-++.-++.+.+|++|++..
T Consensus 6 liVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 44567788999999999863
No 171
>PF15471 TMEM171: Transmembrane protein family 171
Probab=23.10 E-value=72 Score=28.91 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=16.3
Q ss_pred hhhhhhHHHHHhhhhheeecc
Q 016580 312 LGSILGAILIVFGLYTVVWGK 332 (387)
Q Consensus 312 ~~~~~G~~li~~g~~l~~~~~ 332 (387)
..|+.|-.+++.|++......
T Consensus 161 slQImGPlIVl~GLCFFVVAH 181 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAH 181 (319)
T ss_pred ehhhhhhHHHHHhhhhhheee
Confidence 457889999999988776554
No 172
>PRK10649 hypothetical protein; Provisional
Probab=22.97 E-value=8.5e+02 Score=25.12 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHH--HHHHHHHHHHHHHh
Q 016580 28 FGYAGMYIITMVSLKHGMSHYVLAVYRH--VVATIVLAPFAFVL 69 (387)
Q Consensus 28 ~~~~~~~~~~k~~~~~~~~p~~~~~~r~--~~~~l~l~~~~~~~ 69 (387)
++|=.+.+..-+....+.++ ...+|- +.+++.+.|++++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~p 64 (577)
T PRK10649 23 FFWFFSTLLQAIIYISGYSG--TNGFRDALLFSSLWLIPVFLFP 64 (577)
T ss_pred HHHHHHHHHHHHhhhccccc--hhHHHHHHHHHHHHHHHHHHhh
Confidence 33444444333332223333 334443 34445555555443
No 173
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=22.50 E-value=7.4e+02 Score=24.27 Aligned_cols=30 Identities=10% Similarity=-0.056 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHhhhc
Q 016580 76 KLTLPVFLRIMALGFLEPVLDQNLYYLGMKY 106 (387)
Q Consensus 76 ~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 106 (387)
+.+++.... ..+|....-.+++.|+-+-..
T Consensus 191 ~~~pHNl~~-~~lGa~lLWfGWfGFN~GSal 220 (409)
T COG0004 191 AIPPHNLPL-VVLGAALLWFGWFGFNAGSAL 220 (409)
T ss_pred CCCCCchhH-HHHHHHHHHHHHccCCccchh
Confidence 344454443 444444436666666655444
No 174
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=22.27 E-value=5.1e+02 Score=22.33 Aligned_cols=113 Identities=7% Similarity=0.050 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhHHHHHHH
Q 016580 19 PYLAIISLQFGYAGMYIITMVSLKHGMSHYVLAVYRHVVATIVLAPFAFVLERKIRPKLTLPVFLRIMALGFLEPVLDQN 98 (387)
Q Consensus 19 ~~l~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 98 (387)
+.++.-+-+++-|.+..+.+-+ ...+-..++..-.+.++.....+-+..+.+.-...+...|+ .+...... .+-+.
T Consensus 101 sLl~lg~~aLlsgitaff~~nA--~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K-~~lv~~~s-m~lWi 176 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQKNA--QVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWK-YLLVAVLS-MLLWI 176 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHH-HHHHHHHH-HHHHH
Confidence 4555555667777777777776 34554544444444444433333222222211111222233 33333333 45566
Q ss_pred HHHHhhhccCchhHHHhhchhHHHHHHHH------HHHhcccccee
Q 016580 99 LYYLGMKYTTATFASATVNILPAVTFILA------IIFRLETVNVR 138 (387)
Q Consensus 99 ~~~~al~~~~~~~~~~l~~~~pi~~~~la------~~~l~e~~~~~ 138 (387)
+.+.+-..+|++.--. +.|+...+++ ++.+|.|.+..
T Consensus 177 ~v~i~t~~lPtslN~~---L~pi~l~IiGav~lalRfylkkk~NIq 219 (226)
T COG4858 177 AVMIATVFLPTSLNPQ---LPPIALTIIGAVILALRFYLKKKKNIQ 219 (226)
T ss_pred HHHHHHhhCCCcCCcC---CchHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6666666777664433 3444433333 23456665544
No 175
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=22.21 E-value=4.5e+02 Score=26.76 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=9.0
Q ss_pred chHHHHHHHHHHHHHHHH
Q 016580 220 ELSLSTLICLMGVVEGAA 237 (387)
Q Consensus 220 ~~~~~~~~~~~~~v~~~~ 237 (387)
|.......++.+.++.+.
T Consensus 391 P~nAv~l~~i~s~llgll 408 (550)
T KOG1289|consen 391 PLNAVLLSCIISILLGLL 408 (550)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 555555555555444443
No 176
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=22.13 E-value=5.1e+02 Score=22.22 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=21.9
Q ss_pred HHHHHHHhhcccchhhhhhHHHHHh--hhhheee
Q 016580 299 SALGVIILAELVHLGSILGAILIVF--GLYTVVW 330 (387)
Q Consensus 299 ~~~~~~~~~e~~t~~~~~G~~li~~--g~~l~~~ 330 (387)
-.+|..++.|-.-+....|..+.++ |.+...+
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~ 165 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTH 165 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557777888777888888877665 4444443
No 177
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=21.08 E-value=5.3e+02 Score=23.04 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=20.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Q 016580 188 HFFTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAA 237 (387)
Q Consensus 188 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 237 (387)
....|....+.-.++..+...+.+.. +++.....+....++++...
T Consensus 38 algmGlA~~~Vl~~S~~~~sllr~~i----~~~lRi~v~IlvIA~~V~~v 83 (231)
T PRK12405 38 ALGLGLATTLVLVCSNLTVSLLRKWI----PKEIRIPIFVMIIASFVTVV 83 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHH
Confidence 33445444444444444444333322 33455555555555544433
No 178
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=20.85 E-value=5.2e+02 Score=21.90 Aligned_cols=83 Identities=13% Similarity=0.025 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhh
Q 016580 190 FTGTLMLIGSCFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSG 269 (387)
Q Consensus 190 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 269 (387)
...+...+.+++.|++--.+...+.=..-.| ..++-|+. ..+|..........++..+++ +.
T Consensus 21 ~~~~~iGf~gGliWs~v~yl~y~f~FT~v~P-----------~~ll~Pf~------~g~wk~t~~G~~igi~~~gv~-Si 82 (173)
T PF11085_consen 21 AKVLEIGFFGGLIWSLVRYLAYFFHFTEVGP-----------NFLLEPFA------LGDWKNTWLGNLIGIVFIGVF-SI 82 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccc-----------Chhhhhhh------ccchhhhhHHHHHHHHHHHHH-HH
Confidence 3456677777888876655433322110011 11223322 234555455667777778886 77
Q ss_pred HHHHHHHHHHhcCCceeEeec
Q 016580 270 IAYYVQGFVSKQKGPVFVTSF 290 (387)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~s~~ 290 (387)
++-++|...+++...--.+++
T Consensus 83 ~aAllY~~~l~k~~g~W~Gi~ 103 (173)
T PF11085_consen 83 VAALLYYALLKKFKGPWPGIL 103 (173)
T ss_pred HHHHHHHHHHHHhcccchHHH
Confidence 777888888888877655543
No 179
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=20.83 E-value=6.6e+02 Score=23.03 Aligned_cols=18 Identities=0% Similarity=-0.123 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhccCC
Q 016580 201 FGWAGFFILQSFTLKKYP 218 (387)
Q Consensus 201 ~~~a~~~v~~~~~~~~~~ 218 (387)
+.+.+......++.++++
T Consensus 41 ~~~~~~~~~~g~l~dr~g 58 (379)
T TIGR00881 41 IAYGISKFVMGSVSDRSN 58 (379)
T ss_pred HHHHhhhhhhhHHHHhhC
Confidence 344444444444455544
No 180
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=20.52 E-value=1.1e+03 Score=25.42 Aligned_cols=15 Identities=27% Similarity=0.312 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 016580 53 YRHVVATIVLAPFAF 67 (387)
Q Consensus 53 ~r~~~~~l~l~~~~~ 67 (387)
.|+.....++..++.
T Consensus 339 ~R~~fi~~f~~~~~~ 353 (843)
T PF09586_consen 339 YRWSFIFIFLISLLA 353 (843)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666555555555443
No 181
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=20.14 E-value=55 Score=26.43 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=8.1
Q ss_pred chhhhhhHHHHHhhhh
Q 016580 311 HLGSILGAILIVFGLY 326 (387)
Q Consensus 311 t~~~~~G~~li~~g~~ 326 (387)
|..+++|.++.++.+.
T Consensus 23 s~~~~~~sci~~f~la 38 (144)
T PF04145_consen 23 SAGAYVGSCIGVFLLA 38 (144)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4456666666655543
Done!