Query 016580
Match_columns 387
No_of_seqs 189 out of 1851
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 15:57:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 5.2E-10 1.8E-14 90.1 3.8 71 262-332 34-105 (137)
2 3b5d_A Multidrug transporter E 98.6 3E-07 1E-11 71.2 11.3 69 87-161 34-103 (110)
3 2i68_A Protein EMRE; transmemb 98.6 1.1E-07 3.7E-12 76.5 7.1 71 87-163 34-105 (137)
4 3b5d_A Multidrug transporter E 98.5 1.1E-07 3.8E-12 73.7 6.4 70 263-332 35-105 (110)
5 1pw4_A Glycerol-3-phosphate tr 55.7 1.2E+02 0.0042 27.6 18.0 17 120-136 196-212 (451)
6 3l1l_A Arginine/agmatine antip 47.5 68 0.0023 29.8 8.9 48 291-338 387-434 (445)
7 3rko_J NADH-quinone oxidoreduc 30.2 2.3E+02 0.0077 23.2 12.9 32 299-330 127-160 (184)
8 2zxe_G FXYD10, phospholemman-l 20.3 38 0.0013 23.1 1.2 20 315-334 25-44 (74)
9 4djk_A Probable glutamate/gamm 14.9 4.5E+02 0.016 24.5 8.1 135 223-380 377-511 (511)
10 2jln_A MHP1; hydantoin, transp 12.3 1.8E+02 0.0061 27.9 4.2 86 296-381 412-500 (501)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.92 E-value=5.2e-10 Score=90.08 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=54.0
Q ss_pred HhhhhhhhHHHHHHHHHHhcCCceeEeec-chhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeecc
Q 016580 262 YSGVVCSGIAYYVQGFVSKQKGPVFVTSF-SPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGK 332 (387)
Q Consensus 262 ~~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 332 (387)
.+++++++++++++++++++.+++.+..+ ..+.|+++.++++++++|++++.+++|+++|++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35666789999999999999999999999 899999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.64 E-value=3e-07 Score=71.24 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=63.5
Q ss_pred HHHHhHHHHHHHHHHHhhhccCchhHHHh-hchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhh
Q 016580 87 ALGFLEPVLDQNLYYLGMKYTTATFASAT-VNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTL 161 (387)
Q Consensus 87 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~ 161 (387)
+.+++.+++++.++.+++++.|.+.+..+ ..+.|+++.+++++++||+++.. |++|+.+.++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 45666678999999999999999999888 89999999999999999999999 59999999999999864
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.57 E-value=1.1e-07 Score=76.47 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=53.7
Q ss_pred HHHHhHHHHHHHHHHHhhhccCchhHHHh-hchhHHHHHHHHHHHhccccceeeccccchhhHHHHHhhhhhhhhhcc
Q 016580 87 ALGFLEPVLDQNLYYLGMKYTTATFASAT-VNILPAVTFILAIIFRLETVNVRRLQSLAKVIGTAVTVAGAMVMTLYK 163 (387)
Q Consensus 87 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~~la~~~l~e~~~~~~~~~~~~~~g~~~~~~Gv~l~~~~~ 163 (387)
+.+++.+++++.++.+++++.|++.+..+ .++.|+++.++++++++|+++.. |++|+.+.++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcCC
Confidence 56677779999999999999999999988 89999999999999999999999 5999999999999997543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.55 E-value=1.1e-07 Score=73.74 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=63.8
Q ss_pred hhhhhhhHHHHHHHHHHhcCCceeEeec-chhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeecc
Q 016580 263 SGVVCSGIAYYVQGFVSKQKGPVFVTSF-SPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGK 332 (387)
Q Consensus 263 ~g~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 332 (387)
.++++.+++++++.+++|+.+.+.+..+ ..+.|+++.++++++++|++|+.+++|.++|+.|+++....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4555678899999999999999999888 899999999999999999999999999999999999886543
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=55.66 E-value=1.2e+02 Score=27.60 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhccccc
Q 016580 120 PAVTFILAIIFRLETVN 136 (387)
Q Consensus 120 pi~~~~la~~~l~e~~~ 136 (387)
.+...++.+++.+|+..
T Consensus 196 ~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 196 AILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHhhccCCHh
Confidence 33444455566666544
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=47.54 E-value=68 Score=29.80 Aligned_cols=48 Identities=2% Similarity=-0.160 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCCCCC
Q 016580 291 SPLCMIITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKDPPS 338 (387)
Q Consensus 291 ~~~~pv~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~ 338 (387)
...-++++.+...+..-.......+.|..+++.|+.++.+.+++++++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (445)
T 3l1l_A 387 YLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKN 434 (445)
T ss_dssp THHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 344555555555444333223345678888888988887666554433
No 7
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=30.21 E-value=2.3e+02 Score=23.20 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=23.1
Q ss_pred HHHHHHHhhcccchhhhhhHHHHHh--hhhheee
Q 016580 299 SALGVIILAELVHLGSILGAILIVF--GLYTVVW 330 (387)
Q Consensus 299 ~~~~~~~~~e~~t~~~~~G~~li~~--g~~l~~~ 330 (387)
--+|..++++-.=+.+..+..+.+. |.+...+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLar 160 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR 160 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888887754 5554443
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=20.32 E-value=38 Score=23.10 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=13.0
Q ss_pred hhhHHHHHhhhhheeeccCC
Q 016580 315 ILGAILIVFGLYTVVWGKSK 334 (387)
Q Consensus 315 ~~G~~li~~g~~l~~~~~~~ 334 (387)
++++++.++|++++...|-|
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 56777778888777765544
No 9
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=14.87 E-value=4.5e+02 Score=24.52 Aligned_cols=135 Identities=7% Similarity=-0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccccchhhHHHHHHhhhhhhhHHHHHHHHHHhcCCceeEeecchhHHHHHHHHH
Q 016580 223 LSTLICLMGVVEGAAVSLIMERDMSAWKIGFDSRLLAAAYSGVVCSGIAYYVQGFVSKQKGPVFVTSFSPLCMIITSALG 302 (387)
Q Consensus 223 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~ 302 (387)
.....+.+..+..+..-.-.+....+++.+.. .|...+...+......+.++........+.......+...
T Consensus 377 ~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~------- 448 (511)
T 4djk_A 377 IYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGG-KGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVEL------- 448 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCCSCCCSST-THHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCCCCCHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCeecCCC-chHHHHHHHHHHHHHHHHHHeeeeCCccccCCchHHHHHH-------
Q ss_pred HHHhhcccchhhhhhHHHHHhhhhheeeccCCCCCCCCCCCChhhhhhccCcccccCcccCCCCcCCCcchhhhhhhh
Q 016580 303 VIILAELVHLGSILGAILIVFGLYTVVWGKSKDPPSSAASFTDEKAAAQELPITCKSINVDDNNIDGPAGMLKINQAK 380 (387)
Q Consensus 303 ~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (387)
.+++.+++.++..+.+.+++++..+. +....++.+.....++.....+++.++......++-|
T Consensus 449 ------------~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 511 (511)
T 4djk_A 449 ------------LVVSFLVVLALPFILYAVHDRKGKAN---TGVTLEPINSQNAPKGHFFLHPRARSPHYIVMNDKKH 511 (511)
T ss_dssp ------------HHHHHHHHHHHHHHHHHCC---------------------------TTSCTTTCCC----------
T ss_pred ------------HHHHHHHHHHHHHHHHHHhhhhhhcc---cccccchhhhcccCcccccCCccccCCeeeccccccC
No 10
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=12.30 E-value=1.8e+02 Score=27.86 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcccchhhhhhHHHHHhhhhheeeccCCCCCCCCCCCChhhhhhccC---cccccCcccCCCCcCCCcc
Q 016580 296 IITSALGVIILAELVHLGSILGAILIVFGLYTVVWGKSKDPPSSAASFTDEKAAAQEL---PITCKSINVDDNNIDGPAG 372 (387)
Q Consensus 296 v~~~~~~~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 372 (387)
+.+.+.+...----.+..-++|.++-.+--.+..+...+..++.++++.++++...++ ..+.++......|+|.|++
T Consensus 412 ~~a~~~G~~~~~~~~~~~~~~g~~va~v~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (501)
T 2jln_A 412 LAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAKTFPLFSEAESRNEDYLRPIGPVAPADESATANTKEQNQPAG 491 (501)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHHHTTTSCSCCGGGGGHHHHHSCCC---------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCchhhhhcccccccccchhccccCCCcccCCCccchhhcCCCCC
Q ss_pred hhhhhhhhh
Q 016580 373 MLKINQAKS 381 (387)
Q Consensus 373 ~~~~~~~~~ 381 (387)
.+.-..-||
T Consensus 492 ~~~~~~~~~ 500 (501)
T 2jln_A 492 GRGSHHHHH 500 (501)
T ss_dssp ---------
T ss_pred CCCcccccC
Done!