Query 016580
Match_columns 387
No_of_seqs 189 out of 1851
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 15:57:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016580.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016580hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 53.0 59 0.0043 27.3 11.6 35 200-235 69-103 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 31.9 1.3E+02 0.0096 24.8 20.2 24 262-285 352-375 (447)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 20.6 49 0.0036 16.0 2.9 19 190-208 2-20 (27)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 15.9 3E+02 0.022 23.1 19.2 27 85-111 198-224 (383)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 4.8 96 0.007 20.3 0.6 17 319-335 29-45 (91)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.7 6.5E+02 0.047 19.4 6.0 49 85-138 5-53 (248)
7 d1v54m_ f.23.7.1 (M:) Mitochon 4.4 1.4E+02 0.01 16.6 1.0 22 132-158 7-28 (43)
8 d1iwga8 f.35.1.1 (A:513-566,A: 4.1 7E+02 0.051 18.4 8.3 28 297-324 96-123 (222)
9 d1xioa_ f.13.1.1 (A:) Sensory 3.4 8.2E+02 0.06 18.0 17.4 15 116-130 77-91 (226)
10 d1gl4a1 d.22.1.2 (A:399-631) D 2.4 2.2E+02 0.016 22.2 0.7 36 102-138 43-78 (233)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=52.97 E-value=59 Score=27.32 Aligned_cols=35 Identities=0% Similarity=-0.153 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Q 016580 200 CFGWAGFFILQSFTLKKYPAELSLSTLICLMGVVEG 235 (387)
Q Consensus 200 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 235 (387)
.+.+++.....-++..+++ +........+...+..
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g-~r~~~~~~~~~~~~~~ 103 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSN-PRVFLPAGLILAAAVM 103 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHH
Confidence 3444555555556666665 3333333333333333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=31.93 E-value=1.3e+02 Score=24.83 Aligned_cols=24 Identities=8% Similarity=-0.034 Sum_probs=10.6
Q ss_pred HhhhhhhhHHHHHHHHHHhcCCce
Q 016580 262 YSGVVCSGIAYYVQGFVSKQKGPV 285 (387)
Q Consensus 262 ~~g~~~~~~~~~~~~~a~~~~~~~ 285 (387)
..|..........+.......+..
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~ 375 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKK 375 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHH
Confidence 334332333334445555555543
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.56 E-value=49 Score=15.98 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 016580 190 FTGTLMLIGSCFGWAGFFI 208 (387)
Q Consensus 190 ~~G~~~~l~a~~~~a~~~v 208 (387)
..|....-+++++||.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3578888888899988853
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=15.91 E-value=3e+02 Score=23.08 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHHHHHHhhhccCchh
Q 016580 85 IMALGFLEPVLDQNLYYLGMKYTTATF 111 (387)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~al~~~~~~~ 111 (387)
...+|.+..-.++..++-+-.......
T Consensus 198 ~~~lG~~iLw~gW~gFN~gs~~~~~~~ 224 (383)
T d1u7ga_ 198 MVFTGTAILYIGWFGFNAGSAGTANEI 224 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSSSHH
T ss_pred hhhHHHHHHHHHHHHhccccccccchH
Confidence 455566655777887877766654433
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.76 E-value=96 Score=20.26 Aligned_cols=17 Identities=6% Similarity=-0.125 Sum_probs=8.5
Q ss_pred HHHHhhhhheeeccCCC
Q 016580 319 ILIVFGLYTVVWGKSKD 335 (387)
Q Consensus 319 ~li~~g~~l~~~~~~~~ 335 (387)
.+++.|.+++...|.|+
T Consensus 29 ~v~V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRA 45 (91)
T ss_dssp TTHHHHHHHTTTTTTTT
T ss_pred HHHHHHHHHhhheeeec
Confidence 34455555555555443
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.69 E-value=6.5e+02 Score=19.35 Aligned_cols=49 Identities=20% Similarity=0.068 Sum_probs=21.2
Q ss_pred HHHHHHhHHHHHHHHHHHhhhccCchhHHHhhchhHHHHHHHHHHHhcccccee
Q 016580 85 IMALGFLEPVLDQNLYYLGMKYTTATFASATVNILPAVTFILAIIFRLETVNVR 138 (387)
Q Consensus 85 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~ 138 (387)
+.++|++. ++..++....+..-+-..+. ..-+.+.++.++++.+|.-+.
T Consensus 5 ~~ll~l~~-a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~ 53 (248)
T d2r6gf1 5 WSVLGLLG-LLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAW 53 (248)
T ss_dssp HHHHHHHH-HHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTH
T ss_pred HHHHHHHH-HHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccce
Confidence 34445554 33333333444333333222 233444555566655544443
No 7
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.38 E-value=1.4e+02 Score=16.62 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=12.5
Q ss_pred ccccceeeccccchhhHHHHHhhhhhh
Q 016580 132 LETVNVRRLQSLAKVIGTAVTVAGAMV 158 (387)
Q Consensus 132 ~e~~~~~~~~~~~~~~g~~~~~~Gv~l 158 (387)
+|+++..+ |.+|+..++++...
T Consensus 7 ~~~ls~~E-----~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 7 KTPTSPKE-----QAIGLSVTFLSFLL 28 (43)
T ss_dssp SSCCCHHH-----HHHHHHHHHHHHHH
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHc
Confidence 34455554 67777666665443
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.15 E-value=7e+02 Score=18.40 Aligned_cols=28 Identities=11% Similarity=-0.058 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhcccchhhhhhHHHHHhh
Q 016580 297 ITSALGVIILAELVHLGSILGAILIVFG 324 (387)
Q Consensus 297 ~~~~~~~~~~~e~~t~~~~~G~~li~~g 324 (387)
.+.+.+..+.+..++....+|..+.+.-
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhh
Confidence 3445566678888988888877775554
No 9
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=3.41 E-value=8.2e+02 Score=18.04 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=10.5
Q ss_pred hchhHHHHHHHHHHH
Q 016580 116 VNILPAVTFILAIIF 130 (387)
Q Consensus 116 ~~~~pi~~~~la~~~ 130 (387)
.-+.|+....+..+.
T Consensus 77 ~lTtPlll~~l~l~~ 91 (226)
T d1xioa_ 77 MVTTPLLLLSLSWTA 91 (226)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHH
Confidence 456788877776655
No 10
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.44 E-value=2.2e+02 Score=22.17 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=27.4
Q ss_pred HhhhccCchhHHHhhchhHHHHHHHHHHHhcccccee
Q 016580 102 LGMKYTTATFASATVNILPAVTFILAIIFRLETVNVR 138 (387)
Q Consensus 102 ~al~~~~~~~~~~l~~~~pi~~~~la~~~l~e~~~~~ 138 (387)
.+++.+|+..+..+..+.|+... ++|+|-+|.-+..
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~~-igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGGI-IGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHH-HHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcCc-eeeeEEeecCCcc
Confidence 56778888888888888887654 5688888877654
Done!