BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016581
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1J|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1U|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U22|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
Length = 765
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/225 (80%), Positives = 200/225 (88%)
Query: 2 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNT 61
ASHIVGYPR GPKRELKFALESFWDGKS+AEDLQKVSADLRSSIWKQ S AG K+IPSNT
Sbjct: 2 ASHIVGYPRXGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQXSAAGTKFIPSNT 61
Query: 62 FSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIV 121
F++YDQVLDTTA LGAVPPR+ + GGEIG DVYFS ARGNASV A E TKWFDTNYH+IV
Sbjct: 62 FAHYDQVLDTTAXLGAVPPRYGYTGGEIGLDVYFSXARGNASVPAXEXTKWFDTNYHYIV 121
Query: 122 PELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSLL 181
PELGP+V FSYASHKAV EYKEAK GV+TVPVL+GPVSYLLLSK A GV+K+F +LSLL
Sbjct: 122 PELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSLL 181
Query: 182 PKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSF 226
PKILPIYKEV++ELKAAGA+WIQ DEP+LV DL+ KLQAF ++
Sbjct: 182 PKILPIYKEVITELKAAGATWIQLDEPVLVXDLEGQKLQAFTGAY 226
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 121/174 (69%), Positives = 136/174 (78%), Gaps = 6/174 (3%)
Query: 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQ-AF-----IHSFRITNCGIQDTTQIHTH 242
K+ V +L+ G IQ DE L L K + AF +HSFRITNCG+QD+TQIHTH
Sbjct: 588 KDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDSTQIHTH 647
Query: 243 MCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPS 302
CYS+FNDIIHSIID DADVITIENSRS+E LLSVFREGV+Y A IGPGVYDIHSPRIPS
Sbjct: 648 XCYSHFNDIIHSIIDXDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPS 707
Query: 303 TEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQL 356
+EEI DR+ + VLE NILWVNPDCGLKTRKYTEVKPAL N V A KL+R+QL
Sbjct: 708 SEEIADRVNKXLAVLEQNILWVNPDCGLKTRKYTEVKPALKNXVDAAKLIRSQL 761
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
pdb|3PPH|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
Length = 789
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 141/228 (61%), Gaps = 17/228 (7%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
+ S ++G+PR+G +RELK E++W GK++ E+L +LR WK +AG+ IPSN
Sbjct: 24 VQSSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSN 83
Query: 61 TFSYYDQVLDTTAMLGAVPPRF-NWNGGEIGFDVYFSMARG----------NASVLAMEM 109
FSYYDQVLD + + A+P R+ ++ I DV F+M RG V A+EM
Sbjct: 84 DFSYYDQVLDLSLLFNAIPERYTKFDLAPI--DVLFAMGRGLQTTATTTQAAVDVTALEM 141
Query: 110 TKWFDTNYHFIVPELGPDVKF---SYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSK 166
KWFD+NYH++ P +F + A K V E+ EAK GV+T PV++GPVSYL L K
Sbjct: 142 VKWFDSNYHYVRPTFSHSTEFKLNTAAGIKPVDEFNEAKALGVQTRPVILGPVSYLYLGK 201
Query: 167 PAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDL 214
A +SLLPKILP+YKE++ +LK AGA +Q DEP+LV+DL
Sbjct: 202 -ADKDSLDLEPISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDL 248
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 128/231 (55%), Gaps = 20/231 (8%)
Query: 136 KAVTEYKEAKGHGVETVPV---LIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVV 192
KA+T + + + P+ L GPV+ L S P V L L + ++ V
Sbjct: 567 KAMTVKESVYAQSITSKPMKGMLTGPVTILRWSFPRDDVSGKIQALQLGLAL----RDEV 622
Query: 193 SELKAAGASWIQFDEPLLVMDL-------DSHKLQAFIHSFRITNCGIQDTTQIHTHMCY 245
++L+ AG + IQ DEP + L S L SFR+ G++++TQIH+H CY
Sbjct: 623 NDLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGVENSTQIHSHFCY 682
Query: 246 SNFNDIIHSIIDMDADVITIENSRSNE-NLLSVFREGVQYDAAIGPGVYDIHSPRIPSTE 304
S+ + + I +DADV++IE S+ ++ N + F E Y IG G++DIHSPRIPS +
Sbjct: 683 SDLDP--NHIKALDADVVSIEFSKKDDPNYIQEFSE---YPNHIGLGLFDIHSPRIPSKQ 737
Query: 305 EIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQ 355
E V RI E+ V + WVNPDCGLKTR + EVK +L+NMV A K R +
Sbjct: 738 EFVSRIEEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEFRAK 788
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
Without Zinc
pdb|3PPG|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
With Zinc
Length = 789
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 141/228 (61%), Gaps = 17/228 (7%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
+ S ++G+PR+G +RELK E++W GK++ E+L +LR WK +AG+ IPSN
Sbjct: 24 VQSSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSN 83
Query: 61 TFSYYDQVLDTTAMLGAVPPRF-NWNGGEIGFDVYFSMARG----------NASVLAMEM 109
FSYYDQVLD + + A+P R+ ++ I DV F+M RG V A+EM
Sbjct: 84 DFSYYDQVLDLSLLFNAIPERYTKFDLAPI--DVLFAMGRGLQAAATATQAAVDVTALEM 141
Query: 110 TKWFDTNYHFIVPELGPDVKF---SYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSK 166
KWFD+NYH++ P +F + A K V E+ EAK GV+T PV++GPVSYL L K
Sbjct: 142 VKWFDSNYHYVRPTFSHSTEFKLNTAAGIKPVDEFNEAKALGVQTRPVILGPVSYLYLGK 201
Query: 167 PAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDL 214
A +SLLPKILP+YKE++ +LK AGA +Q DEP+LV+DL
Sbjct: 202 -ADKDSLDLEPISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDL 248
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 128/231 (55%), Gaps = 20/231 (8%)
Query: 136 KAVTEYKEAKGHGVETVPV---LIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVV 192
KA+T + + + P+ L GPV+ L S P V L L + ++ V
Sbjct: 567 KAMTVKESVYAQSITSKPMKGMLTGPVTILRWSFPRDDVSGKIQALQLGLAL----RDEV 622
Query: 193 SELKAAGASWIQFDEPLLVMDL-------DSHKLQAFIHSFRITNCGIQDTTQIHTHMCY 245
++L+ AG + IQ DEP + L S L SFR+ G++++TQIH+H CY
Sbjct: 623 NDLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGVENSTQIHSHFCY 682
Query: 246 SNFNDIIHSIIDMDADVITIENSRSNE-NLLSVFREGVQYDAAIGPGVYDIHSPRIPSTE 304
S+ + + I +DADV++IE S+ ++ N + F E Y IG G++DIHSPRIPS +
Sbjct: 683 SDLDP--NHIKALDADVVSIEFSKKDDPNYIQEFSE---YPNHIGLGLFDIHSPRIPSKQ 737
Query: 305 EIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQ 355
E V RI E+ V + WVNPDCGLKTR + EVK +L+NMV A K R +
Sbjct: 738 EFVSRIEEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEFRAK 788
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
pdb|3PPC|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
Length = 789
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 141/228 (61%), Gaps = 17/228 (7%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
+ S ++G+PR+G +RELK E++W GK++ E+L +LR WK +AG+ IPSN
Sbjct: 24 VQSSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSN 83
Query: 61 TFSYYDQVLDTTAMLGAVPPRF-NWNGGEIGFDVYFSMARG----------NASVLAMEM 109
FSYYDQVLD + + A+P R+ ++ I DV F+M RG V A+EM
Sbjct: 84 DFSYYDQVLDLSLLFNAIPERYTKFDLAPI--DVLFAMGRGLQYYATYTQAAVDVTALEM 141
Query: 110 TKWFDTNYHFIVPELGPDVKF---SYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSK 166
KWFD+NYH++ P +F + A K V E+ EAK GV+T PV++GPVSYL L K
Sbjct: 142 VKWFDSNYHYVRPTFSHSTEFKLNTAAGIKPVDEFNEAKALGVQTRPVILGPVSYLYLGK 201
Query: 167 PAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDL 214
A +SLLPKILP+YKE++ +LK AGA +Q DEP+LV+DL
Sbjct: 202 -ADKDSLDLEPISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDL 248
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 128/231 (55%), Gaps = 20/231 (8%)
Query: 136 KAVTEYKEAKGHGVETVPV---LIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVV 192
KA+T + + + P+ L GPV+ L S P V L L + ++ V
Sbjct: 567 KAMTVKESVYAQSITSKPMKGMLTGPVTILRWSFPRDDVSGKIQALQLGLAL----RDEV 622
Query: 193 SELKAAGASWIQFDEPLLVMDL-------DSHKLQAFIHSFRITNCGIQDTTQIHTHMCY 245
++L+ AG + IQ DEP + L S L SFR+ G++++TQIH+H CY
Sbjct: 623 NDLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGVENSTQIHSHFCY 682
Query: 246 SNFNDIIHSIIDMDADVITIENSRSNE-NLLSVFREGVQYDAAIGPGVYDIHSPRIPSTE 304
S+ + + I +DADV++IE S+ ++ N + F E Y IG G++DIHSPRIPS +
Sbjct: 683 SDLDP--NHIKALDADVVSIEFSKKDDPNYIQEFSE---YPNHIGLGLFDIHSPRIPSKQ 737
Query: 305 EIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQ 355
E V RI E+ V + WVNPDCGLKTR + EVK +L+NMV A K R +
Sbjct: 738 EFVSRIEEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEFRAK 788
>pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans
pdb|3T0C|A Chain A, Crystal Structure Of Streptococcus Mutans Mete Complexed
With Zinc
Length = 779
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 173/354 (48%), Gaps = 31/354 (8%)
Query: 6 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYY 65
+GYPR+G RE K +E++W GK S DL + +LR K+ AG+ IP FS Y
Sbjct: 41 LGYPRLGENREWKKLIEAYWAGKVSKNDLFAGAKELRLDFLKKQLNAGLDLIPVGDFSLY 100
Query: 66 DQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELG 125
D +LD + +P RF I D+YF++ARGN +A M KWF+TNYH+IVPE
Sbjct: 101 DHILDLSVQFNIIPKRFAKE--PIDIDLYFAIARGNKENVASSMKKWFNTNYHYIVPEWS 158
Query: 126 PDVKFSYASHKAVTEYKEAKG-HGVETVPVLIGPVSYLLLSKPAWGVEK-TFSVLSLLPK 183
+ +++ + Y EA+ G + PV+ GP++Y+ LS GVE T +V SL
Sbjct: 159 KQ-RPKLNNNRLLDLYLEAREVVGDKAKPVITGPITYVALST---GVEDFTAAVKSL--- 211
Query: 184 ILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHM 243
LP+YK+V +EL AGAS+IQ DEP+ V D LQA + + D I
Sbjct: 212 -LPLYKQVFTELVKAGASYIQVDEPIFVTDEGKDYLQAAKAVYAYFAKEVPDAKFIFQ-- 268
Query: 244 CYSNFNDIIHSII--DMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYD---IHSP 298
+ F +I S + + D ++ E L + G I GV D I S
Sbjct: 269 --TYFEGLIDSQVLSQLPVDAFGLDFVYGLEENLEAIKTGAFKGKEIFAGVIDGRNIWSS 326
Query: 299 RIPSTEEIVDRIYEMRTVLETNILWVNPDCGL-----KTRKYTEVKPALSNMVA 347
T +++ I E ++ L + P C L T+ T++ P L N +A
Sbjct: 327 DFVKTSALLETIEE-----QSAALTIQPSCSLLHVPVTTKNETDLDPVLRNGLA 375
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 121/210 (57%), Gaps = 13/210 (6%)
Query: 154 VLIGPVSYLLLSKPAWGVEKT-FSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLV- 211
+L GP++ W E+T L +I K+ + L+ AG + IQ DE L
Sbjct: 574 MLTGPITIT-----NWSFERTDIPRDQLFNQIGLAIKDEIKLLENAGIAIIQVDEAALRE 628
Query: 212 -MDLDSHKLQAF----IHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266
+ L K +A+ +H+F I ++D TQIHTHMCYS F++II +I +DADVI+IE
Sbjct: 629 GLPLRKSKQKAYLDDAVHAFHIATSSVKDETQIHTHMCYSKFDEIIDAIRALDADVISIE 688
Query: 267 NSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNP 326
SRS+ +++ F V Y IG GVYDIHSPR+P+ EE+V I L WVNP
Sbjct: 689 TSRSHGDIIESFETAV-YPLGIGLGVYDIHSPRVPTKEEVVANIERPLRQLSPTQFWVNP 747
Query: 327 DCGLKTRKYTEVKPALSNMVAATKLLRTQL 356
DCGLKTR+ E AL +VAATK +R +L
Sbjct: 748 DCGLKTRQEPETIAALKVLVAATKEVRQKL 777
>pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus
Mutans
Length = 755
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 173/354 (48%), Gaps = 31/354 (8%)
Query: 6 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYY 65
+GYPR+G RE K +E++W GK S DL + +LR K+ AG+ IP FS Y
Sbjct: 9 LGYPRLGENREWKKLIEAYWAGKVSKNDLFAGAKELRLDFLKKQLNAGLDLIPVGDFSLY 68
Query: 66 DQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELG 125
D +LD + +P RF I D+YF++ARGN +A M KWF+TNYH+IVPE
Sbjct: 69 DHILDLSVQFNIIPKRFAKE--PIDIDLYFAIARGNKENVASSMKKWFNTNYHYIVPEWS 126
Query: 126 PDVKFSYASHKAVTEYKEAKG-HGVETVPVLIGPVSYLLLSKPAWGVEK-TFSVLSLLPK 183
+ +++ + Y EA+ G + PV+ GP++Y+ LS GVE T +V SL
Sbjct: 127 KQ-RPKLNNNRLLDLYLEAREVVGDKAKPVITGPITYVALST---GVEDFTAAVKSL--- 179
Query: 184 ILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHM 243
LP+YK+V +EL AGAS+IQ DEP+ V D LQA + + D I
Sbjct: 180 -LPLYKQVFTELVKAGASYIQVDEPIFVTDEGKDYLQAAKAVYAYFAKEVPDAKFIFQ-- 236
Query: 244 CYSNFNDIIHSII--DMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYD---IHSP 298
+ F +I S + + D ++ E L + G I GV D I S
Sbjct: 237 --TYFEGLIDSQVLSQLPVDAFGLDFVYGLEENLEAIKTGAFKGKEIFAGVIDGRNIWSS 294
Query: 299 RIPSTEEIVDRIYEMRTVLETNILWVNPDCGL-----KTRKYTEVKPALSNMVA 347
T +++ I E ++ L + P C L T+ T++ P L N +A
Sbjct: 295 DFVKTSALLETIEE-----QSAALTIQPSCSLLHVPVTTKNETDLDPVLRNGLA 343
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 121/210 (57%), Gaps = 13/210 (6%)
Query: 154 VLIGPVSYLLLSKPAWGVEKT-FSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLV- 211
+L GP++ W E+T L +I K+ + L+ AG + IQ DE L
Sbjct: 542 MLTGPITIT-----NWSFERTDIPRDQLFNQIGLAIKDEIKLLENAGIAIIQVDEAALRE 596
Query: 212 -MDLDSHKLQAF----IHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266
+ L K +A+ +H+F I ++D TQIHTHMCYS F++II +I +DADVI+IE
Sbjct: 597 GLPLRKSKQKAYLDDAVHAFHIATSSVKDETQIHTHMCYSKFDEIIDAIRALDADVISIE 656
Query: 267 NSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNP 326
SRS+ +++ F V Y IG GVYDIHSPR+P+ EE+V I L WVNP
Sbjct: 657 TSRSHGDIIESFETAV-YPLGIGLGVYDIHSPRVPTKEEVVANIERPLRQLSPTQFWVNP 715
Query: 327 DCGLKTRKYTEVKPALSNMVAATKLLRTQL 356
DCGLKTR+ E AL +VAATK +R +L
Sbjct: 716 DCGLKTRQEPETIAALKVLVAATKEVRQKL 745
>pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|1T7L|B Chain B, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|3BQ5|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ5|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ6|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
pdb|3BQ6|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
Length = 766
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 156/298 (52%), Gaps = 17/298 (5%)
Query: 3 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTF 62
++ G+P++G KRE K ALE FW GK + E ++ LR + + + + IPSN
Sbjct: 35 AYAFGFPKIGEKREFKKALEDFWKGKITEEQFEEEMNKLRMYMVENYRK-NVDVIPSNEL 93
Query: 63 SYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVP 122
SYYD VLDT M+GAVP RF G G YF MARG A+EMTK+F+TNYH++VP
Sbjct: 94 SYYDFVLDTAVMVGAVPERF---GEYRGLSTYFDMARGGK---ALEMTKFFNTNYHYLVP 147
Query: 123 ELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKP--AWGVEKTFSVLSL 180
E+ + +F +K + +Y K G+ET P +IGP ++L LSK W + + + L
Sbjct: 148 EIETE-EFYLLENKPLEDYLFFKSKGIETAPWVIGPFTFLYLSKRNGEW-IRRPNQMEKL 205
Query: 181 LPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIH 240
L ++ +YKEV +L G I +EP V DL+ ++ +R + + +
Sbjct: 206 LESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEKAHWDLILNVYRELS---EFPLTVF 262
Query: 241 THMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSP 298
T+ Y + +D + + + + + + ENL ++ + G D + GV + P
Sbjct: 263 TY--YDSVSD-YEACVSLPVKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQP 317
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 99/173 (57%), Gaps = 7/173 (4%)
Query: 190 EVVSELKAAGASWIQFDEPLLVMDLDSHK------LQAFIHSFRITNCGIQDTTQIHTHM 243
E V +L+ AG +Q DEP K + I++F + + TQIH HM
Sbjct: 593 EEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFNLA-ANARPETQIHAHM 651
Query: 244 CYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPST 303
CYS+FN+II I ++ DVI+IE SRS ++S F + IG GV+DIHSP +PS
Sbjct: 652 CYSDFNEIIEYIHQLEFDVISIEASRSKGEIISAFENFKGWIKQIGVGVWDIHSPAVPSI 711
Query: 304 EEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQL 356
E+ + + + VL ++W+NPDCGLKTR + EV P+L NMVA K +R +
Sbjct: 712 NEMREIVERVLRVLPKELIWINPDCGLKTRNWDEVIPSLRNMVALAKEMREKF 764
>pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin-
Independent Methionine Synthase Complexed With
Methyltetrahydrofolate
pdb|1XR2|B Chain B, Crystal Structure Of Oxidized T. Maritima Cobalamin-
Independent Methionine Synthase Complexed With
Methyltetrahydrofolate
Length = 766
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 156/298 (52%), Gaps = 17/298 (5%)
Query: 3 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTF 62
++ G+P++G KRE K ALE FW GK + E ++ LR + + + + IPSN
Sbjct: 35 AYAFGFPKIGEKREFKKALEDFWKGKITEEQFEEEMNKLRMYMVENYRK-NVDVIPSNEL 93
Query: 63 SYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVP 122
SYYD VLDT M+GAVP RF G G YF MARG A+EMTK+F+TNYH++VP
Sbjct: 94 SYYDFVLDTAVMVGAVPERF---GEYRGLSTYFDMARGGK---ALEMTKFFNTNYHYLVP 147
Query: 123 ELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKP--AWGVEKTFSVLSL 180
E+ + +F +K + +Y K G+ET P +IGP ++L LSK W + + + L
Sbjct: 148 EIETE-EFYLLENKPLEDYLFFKSKGIETAPWVIGPFTFLYLSKRNGEW-IRRPNQMEKL 205
Query: 181 LPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIH 240
L ++ +YKEV +L G I +EP V DL+ ++ +R + + +
Sbjct: 206 LESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEKAHWDLILNVYRELS---EFPLTVF 262
Query: 241 THMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSP 298
T+ Y + +D + + + + + + ENL ++ + G D + GV + P
Sbjct: 263 TY--YDSVSD-YEACVSLPVKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQP 317
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 99/173 (57%), Gaps = 7/173 (4%)
Query: 190 EVVSELKAAGASWIQFDEPLLVMDLDSHK------LQAFIHSFRITNCGIQDTTQIHTHM 243
E V +L+ AG +Q DEP K + I++F + + TQIH HM
Sbjct: 593 EEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFNLA-ANARPETQIHAHM 651
Query: 244 CYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPST 303
CYS+FN+II I ++ DVI+IE SRS ++S F + IG GV+DIHSP +PS
Sbjct: 652 CYSDFNEIIEYIHQLEFDVISIEASRSKGEIISAFENFKGWIKQIGVGVWDIHSPAVPSI 711
Query: 304 EEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQL 356
E+ + + + VL ++W+NPDCGLKTR + EV P+L NMVA K +R +
Sbjct: 712 NEMREIVERVLRVLPKELIWINPDCGLKTRNWDEVIPSLRNMVALAKEMREKF 764
>pdb|1XDJ|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
pdb|1XDJ|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
Length = 766
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 148/298 (49%), Gaps = 17/298 (5%)
Query: 3 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTF 62
++ G+P++G KRE K ALE FW GK + E ++ LR + + + IPSN
Sbjct: 35 AYAFGFPKIGEKREFKKALEDFWKGKITEEQFEEEXNKLRXYXVENYRK-NVDVIPSNEL 93
Query: 63 SYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVP 122
SYYD VLDT +GAVP RF G G YF ARG A+E TK+F+TNYH++VP
Sbjct: 94 SYYDFVLDTAVXVGAVPERF---GEYRGLSTYFDXARGGK---ALEXTKFFNTNYHYLVP 147
Query: 123 ELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKP--AWGVEKTFSVLSL 180
E+ + +F +K + +Y K G+ET P +IGP ++L LSK W + + L
Sbjct: 148 EIETE-EFYLLENKPLEDYLFFKSKGIETAPWVIGPFTFLYLSKRNGEW-IRRPNQXEKL 205
Query: 181 LPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIH 240
L ++ +YKEV +L G I +EP V DL+ ++ +R + +
Sbjct: 206 LESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEKAHWDLILNVYRELS-----EFPLT 260
Query: 241 THMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSP 298
Y + +D + + + + + + ENL ++ + G D + GV + P
Sbjct: 261 VFTYYDSVSD-YEACVSLPVKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQP 317
Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 95/173 (54%), Gaps = 7/173 (4%)
Query: 190 EVVSELKAAGASWIQFDEPLLVMDLDSHK------LQAFIHSFRITNCGIQDTTQIHTHM 243
E V +L+ AG +Q DEP K + I++F + + TQIH H
Sbjct: 593 EEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFNLA-ANARPETQIHAHX 651
Query: 244 CYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPST 303
CYS+FN+II I ++ DVI+IE SRS ++S F + IG GV+DIHSP +PS
Sbjct: 652 CYSDFNEIIEYIHQLEFDVISIEASRSKGEIISAFENFKGWIKQIGVGVWDIHSPAVPSI 711
Query: 304 EEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQL 356
E + + + VL ++W+NPDCGLKTR + EV P+L N VA K R +
Sbjct: 712 NEXREIVERVLRVLPKELIWINPDCGLKTRNWDEVIPSLRNXVALAKEXREKF 764
>pdb|1XPG|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And
Methyltetrahydrofolate
pdb|1XPG|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And
Methyltetrahydrofolate
Length = 765
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 148/298 (49%), Gaps = 17/298 (5%)
Query: 3 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTF 62
++ G+P++G KRE K ALE FW GK + E ++ LR + + + IPSN
Sbjct: 35 AYAFGFPKIGEKREFKKALEDFWKGKITEEQFEEEXNKLRXYXVENYRK-NVDVIPSNEL 93
Query: 63 SYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVP 122
SYYD VLDT +GAVP RF G G YF ARG A+E TK+F+TNYH++VP
Sbjct: 94 SYYDFVLDTAVXVGAVPERF---GEYRGLSTYFDXARGGK---ALEXTKFFNTNYHYLVP 147
Query: 123 ELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKP--AWGVEKTFSVLSL 180
E+ + +F +K + +Y K G+ET P +IGP ++L LSK W + + L
Sbjct: 148 EIETE-EFYLLENKPLEDYLFFKSKGIETAPWVIGPFTFLYLSKRNGEW-IRRPNQXEKL 205
Query: 181 LPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIH 240
L ++ +YKEV +L G I +EP V DL+ ++ +R + +
Sbjct: 206 LESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEKAHWDLILNVYRELS-----EFPLT 260
Query: 241 THMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSP 298
Y + +D + + + + + + ENL ++ + G D + GV + P
Sbjct: 261 VFTYYDSVSD-YEACVSLPVKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQP 317
Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 7/174 (4%)
Query: 190 EVVSELKAAGASWIQFDEPLLVMDLDSHK------LQAFIHSFRITNCGIQDTTQIHTHM 243
E V +L+ AG +Q DEP K + I++F + + TQIH H
Sbjct: 593 EEVKDLEEAGIKIVQIDEPAFREKAPIKKSKWPEYFEWAINAFNLA-ANARPETQIHAHX 651
Query: 244 CYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPST 303
CYS+FN+II I ++ DVI+IE SRS ++S F + IG GV+DIHSP +PS
Sbjct: 652 CYSDFNEIIEYIHQLEFDVISIEASRSKGEIISAFENFKGWIKQIGVGVWDIHSPAVPSI 711
Query: 304 EEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLT 357
E + + + VL ++W+NPDCGLKTR + EV P+L N VA K R +
Sbjct: 712 NEXREIVERVLRVLPKELIWINPDCGLKTRNWDEVIPSLRNXVALAKEXREKFA 765
>pdb|3RPD|A Chain A, The Structure Of A B12-Independent Methionine Synthase
From Shewanella Sp. W3-18-1 In Complex With
Selenomethionine.
pdb|3RPD|B Chain B, The Structure Of A B12-Independent Methionine Synthase
From Shewanella Sp. W3-18-1 In Complex With
Selenomethionine
Length = 357
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 22/191 (11%)
Query: 187 IYKEVVSELKAAGASWIQFDEPLL------VMDLDSHKLQAFIHSFRITNC-------GI 233
I E EL+AAG IQFDEP V D L+ I + GI
Sbjct: 172 ILNEEAKELEAAGVDIIQFDEPAFNVFFDEVNDWGIACLERAIEGLKCETAVHICYGYGI 231
Query: 234 QDTTQIHTHMC--YSNFNDIIHSIIDMDADVITIE--NSRSNENLLSVFREGVQYDAAIG 289
+ T + + + ++ + + D+I++E NS LL + R +
Sbjct: 232 KANTDWKKTLGSEWRQYEEVFPKLQKSNIDIISLECHNSHVPXELLELIR-----GKKVX 286
Query: 290 PGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAT 349
G D+ + I + EE+ D + + ++ + L+ +CG + + L+ + A
Sbjct: 287 VGAIDVATDTIETAEEVADTLRKALKFVDADKLYPCTNCGXTPLSHQVTRGKLNALSAGA 346
Query: 350 KLLRTQLTVPR 360
+++R +L R
Sbjct: 347 EIVRKELLALR 357
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 208 PLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMD 259
P VM+ H ++H+ T G++ T++HTH+ + ++H +D+D
Sbjct: 451 PNGVMEAKMHA-TGYVHATFYTPEGLRHGTRLHTHLIGNIHTHLVHYRVDLD 501
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHK---LQAFIHSFR-ITNCGIQDTTQIHTHMC 244
KE + +L+AAG + D +++L K +A+ F+ + CG+ + H C
Sbjct: 36 KEQLLQLRAAGVDGVMVDVRWGIIELKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQC 95
Query: 245 YSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGV 292
N DI++ I + V+ I SN ++ R G + + GV
Sbjct: 96 GGNVGDIVN--IPIPQWVLDI--GESNHDIFYTNRSGTRNKEYLTVGV 139
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 17/131 (12%)
Query: 30 SAEDLQKVSADLRSSIWKQMSEAGI----KYIPSNTFSYYDQVLDTTAMLGAVPPRFNWN 85
+ D+ V+AD S + Q S + + P +T ++V D + W
Sbjct: 329 AGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEY---------WE 379
Query: 86 GGE---IGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYK 142
G FD +M GN+ V E+ TN HF +G KF KA E
Sbjct: 380 GARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVK-KAYVEAN 438
Query: 143 EAKGHGVETVP 153
+ G ++ P
Sbjct: 439 QMLGDLIKVTP 449
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 17/131 (12%)
Query: 30 SAEDLQKVSADLRSSIWKQMSEAGI----KYIPSNTFSYYDQVLDTTAMLGAVPPRFNWN 85
+ D+ V+AD S + Q S + + P +T ++V D + W
Sbjct: 329 AGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEY---------WE 379
Query: 86 GGE---IGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYK 142
G FD +M GN+ V E+ TN HF +G KF KA E
Sbjct: 380 GARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVK-KAYVEAN 438
Query: 143 EAKGHGVETVP 153
+ G ++ P
Sbjct: 439 QMLGDLIKVTP 449
>pdb|2J1N|A Chain A, Osmoporin Ompc
pdb|2J1N|B Chain B, Osmoporin Ompc
pdb|2J1N|C Chain C, Osmoporin Ompc
pdb|2J4U|P Chain P, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|Q Chain Q, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|R Chain R, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|U Chain U, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|V Chain V, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|W Chain W, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2ZLE|D Chain D, Cryo-Em Structure Of Degp12OMP
pdb|3NB3|D Chain D, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
At Specific Sites In The Shigella Phage Sf6 Virion As
Structural Components
pdb|4A8D|M Chain M, Degp Dodecamer With Bound Omp
Length = 346
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 8 YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSY--- 64
Y R+G K E + + G+ + +Q SA+ ++ W +++ AG+K+ +F Y
Sbjct: 35 YMRLGFKGETQVTDQLTGYGQWEYQ-IQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRN 93
Query: 65 YDQVLDTTAMLGAVPPRFNWNGGEIGFDVY----FSMARGNA 102
Y V D T+ +P E G D Y F RGN
Sbjct: 94 YGVVYDVTSWTDVLP--------EFGGDTYGSDNFMQQRGNG 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,674,960
Number of Sequences: 62578
Number of extensions: 484684
Number of successful extensions: 1506
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1436
Number of HSP's gapped (non-prelim): 34
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)