Query 016581
Match_columns 387
No_of_seqs 165 out of 1390
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05222 5-methyltetrahydropte 100.0 2.1E-78 4.6E-83 646.3 37.5 353 1-357 2-757 (758)
2 PLN02475 5-methyltetrahydropte 100.0 9.5E-78 2.1E-82 638.1 39.2 357 1-357 1-763 (766)
3 KOG2263 Methionine synthase II 100.0 8.5E-78 1.8E-82 583.4 30.1 358 1-358 2-764 (765)
4 cd03312 CIMS_N_terminal_like C 100.0 4.6E-76 1E-80 582.5 34.5 351 2-358 1-356 (360)
5 PF08267 Meth_synt_1: Cobalami 100.0 1.2E-68 2.6E-73 515.0 26.8 308 2-316 1-309 (310)
6 TIGR01371 met_syn_B12ind 5-met 100.0 5.3E-68 1.2E-72 565.8 33.6 352 6-364 1-358 (750)
7 PRK09121 5-methyltetrahydropte 100.0 3.1E-66 6.7E-71 508.5 33.4 315 1-357 3-339 (339)
8 PRK08575 5-methyltetrahydropte 100.0 1.4E-65 3E-70 502.3 33.6 311 1-352 3-322 (326)
9 COG0620 MetE Methionine syntha 100.0 1.7E-63 3.6E-68 484.6 30.7 320 1-355 5-330 (330)
10 PRK06520 5-methyltetrahydropte 100.0 2.6E-62 5.5E-67 485.7 31.6 319 1-352 8-367 (368)
11 PRK06233 hypothetical protein; 100.0 8.1E-62 1.7E-66 483.1 31.2 324 1-353 9-371 (372)
12 TIGR01371 met_syn_B12ind 5-met 100.0 1.7E-61 3.8E-66 515.8 33.7 321 1-355 422-750 (750)
13 PRK01207 methionine synthase; 100.0 2.7E-60 5.8E-65 461.4 33.1 312 1-356 4-343 (343)
14 PRK04326 methionine synthase; 100.0 6.2E-58 1.3E-62 449.9 34.6 316 1-357 9-327 (330)
15 PF01717 Meth_synt_2: Cobalami 100.0 2.2E-57 4.8E-62 445.0 26.5 314 1-351 1-324 (324)
16 cd03311 CIMS_C_terminal_like C 100.0 3.9E-55 8.4E-60 430.4 24.7 309 2-350 1-331 (332)
17 PRK00957 methionine synthase; 100.0 2.3E-50 5E-55 392.1 29.7 297 1-353 2-305 (305)
18 cd03310 CIMS_like CIMS - Cobal 100.0 1E-47 2.2E-52 375.8 25.7 304 2-350 1-320 (321)
19 PRK06052 5-methyltetrahydropte 100.0 4.8E-44 1E-48 342.6 26.8 292 2-355 5-343 (344)
20 PRK06438 hypothetical protein; 100.0 4.6E-40 1E-44 309.3 23.8 281 1-349 2-291 (292)
21 PRK05222 5-methyltetrahydropte 100.0 5.5E-31 1.2E-35 282.0 17.9 180 1-215 428-610 (758)
22 PLN02475 5-methyltetrahydropte 100.0 2.1E-30 4.5E-35 276.3 18.3 180 1-214 433-614 (766)
23 cd00465 URO-D_CIMS_like The UR 99.9 1.3E-24 2.8E-29 211.1 16.9 266 39-350 29-305 (306)
24 KOG2263 Methionine synthase II 99.9 2.3E-21 5E-26 189.9 11.7 180 2-215 434-615 (765)
25 cd03465 URO-D_like The URO-D _ 99.7 5.1E-17 1.1E-21 159.4 15.8 205 137-350 111-329 (330)
26 PRK06252 methylcobalamin:coenz 99.7 1.9E-16 4.2E-21 156.2 16.7 204 137-353 123-337 (339)
27 TIGR01463 mtaA_cmuA methyltran 99.7 2.7E-16 6E-21 155.2 16.6 205 136-352 122-338 (340)
28 cd03307 Mta_CmuA_like MtaA_Cmu 99.6 2.9E-14 6.3E-19 140.1 14.8 201 137-350 114-325 (326)
29 PRK00115 hemE uroporphyrinogen 99.5 1.7E-13 3.6E-18 135.8 16.3 206 136-352 122-344 (346)
30 PLN02433 uroporphyrinogen deca 99.5 3.7E-13 8.1E-18 133.3 17.7 208 136-355 115-340 (345)
31 TIGR01464 hemE uroporphyrinoge 99.5 2.5E-13 5.5E-18 134.1 15.7 204 136-350 116-337 (338)
32 cd00717 URO-D Uroporphyrinogen 99.5 7E-13 1.5E-17 130.7 15.9 203 137-350 114-334 (335)
33 PF01208 URO-D: Uroporphyrinog 99.4 1.9E-12 4.1E-17 127.8 10.8 203 137-351 122-342 (343)
34 cd03308 CmuA_CmuC_like CmuA_Cm 99.2 1.6E-10 3.4E-15 115.9 16.0 193 151-350 173-377 (378)
35 cd03309 CmuC_like CmuC_like. P 99.1 6.1E-10 1.3E-14 109.1 14.1 177 152-333 116-306 (321)
36 COG0407 HemE Uroporphyrinogen- 99.1 1.7E-09 3.6E-14 106.4 16.5 210 135-355 124-351 (352)
37 KOG2872 Uroporphyrinogen decar 97.4 0.0016 3.4E-08 61.8 11.0 165 177-353 184-357 (359)
38 PRK08091 ribulose-phosphate 3- 95.4 0.63 1.4E-05 43.5 14.6 144 187-350 26-174 (228)
39 COG0036 Rpe Pentose-5-phosphat 94.7 1.6 3.4E-05 40.5 14.7 146 187-351 17-166 (220)
40 PF00834 Ribul_P_3_epim: Ribul 94.2 0.45 9.8E-06 43.6 10.1 140 187-351 13-162 (201)
41 PRK08005 epimerase; Validated 93.5 2.6 5.7E-05 38.9 13.9 137 187-348 14-160 (210)
42 PLN02334 ribulose-phosphate 3- 93.1 1.5 3.2E-05 40.9 11.7 88 188-280 22-113 (229)
43 COG0646 MetH Methionine syntha 92.8 9.6 0.00021 37.0 16.8 153 181-350 138-310 (311)
44 PRK08883 ribulose-phosphate 3- 92.8 5.4 0.00012 37.1 14.9 139 187-349 13-161 (220)
45 PRK08745 ribulose-phosphate 3- 92.8 5.3 0.00011 37.3 14.8 139 187-349 17-165 (223)
46 PRK09490 metH B12-dependent me 91.1 2.9 6.3E-05 48.2 13.0 175 187-371 385-591 (1229)
47 COG1410 MetH Methionine syntha 90.9 2.5 5.3E-05 45.6 11.4 170 190-372 58-256 (842)
48 PRK14057 epimerase; Provisiona 90.7 9.1 0.0002 36.4 14.1 141 187-350 33-188 (254)
49 PTZ00170 D-ribulose-5-phosphat 89.8 4.8 0.0001 37.5 11.4 89 187-280 20-112 (228)
50 KOG3111 D-ribulose-5-phosphate 89.6 15 0.00033 33.4 13.6 149 187-358 18-169 (224)
51 PRK09722 allulose-6-phosphate 89.0 18 0.00038 33.9 14.5 137 187-350 16-164 (229)
52 cd00530 PTE Phosphotriesterase 88.9 17 0.00038 34.6 15.0 94 236-332 149-249 (293)
53 PRK07535 methyltetrahydrofolat 88.9 21 0.00046 34.0 15.3 168 187-371 26-218 (261)
54 cd00739 DHPS DHPS subgroup of 88.4 23 0.0005 33.6 16.2 147 190-347 28-193 (257)
55 PRK10812 putative DNAse; Provi 87.4 4.5 9.7E-05 38.7 9.7 83 236-331 124-209 (265)
56 COG5016 Pyruvate/oxaloacetate 85.3 14 0.00031 37.3 12.0 171 186-382 156-354 (472)
57 cd04724 Tryptophan_synthase_al 84.8 35 0.00075 32.0 16.6 78 186-266 14-111 (242)
58 PRK00043 thiE thiamine-phospha 83.2 12 0.00026 33.7 10.2 67 188-267 23-89 (212)
59 PRK08195 4-hyroxy-2-oxovalerat 82.7 53 0.0011 32.5 15.8 133 188-332 27-171 (337)
60 COG3462 Predicted membrane pro 82.3 1.6 3.5E-05 35.6 3.4 29 14-42 88-116 (117)
61 TIGR01496 DHPS dihydropteroate 82.0 47 0.001 31.5 17.8 148 188-348 25-192 (257)
62 cd00564 TMP_TenI Thiamine mono 80.4 20 0.00042 31.6 10.3 79 187-278 13-91 (196)
63 TIGR02082 metH 5-methyltetrahy 78.7 79 0.0017 36.8 16.5 141 181-332 143-302 (1178)
64 TIGR02082 metH 5-methyltetrahy 78.4 42 0.00091 39.0 14.2 172 186-371 368-575 (1178)
65 PF09851 SHOCT: Short C-termin 77.3 5.9 0.00013 24.8 4.1 27 15-41 3-29 (31)
66 PRK09490 metH B12-dependent me 77.2 87 0.0019 36.6 16.2 141 182-332 160-318 (1229)
67 cd07944 DRE_TIM_HOA_like 4-hyd 76.8 70 0.0015 30.5 16.5 137 189-332 23-165 (266)
68 PRK10508 hypothetical protein; 74.1 5.8 0.00013 39.2 5.3 49 299-351 284-332 (333)
69 cd00429 RPE Ribulose-5-phospha 73.9 19 0.00042 32.3 8.4 74 188-266 14-87 (211)
70 TIGR01212 radical SAM protein, 73.3 93 0.002 30.2 13.7 147 190-355 127-292 (302)
71 cd07943 DRE_TIM_HOA 4-hydroxy- 72.9 86 0.0019 29.6 15.2 132 189-332 25-168 (263)
72 PRK03512 thiamine-phosphate py 72.1 26 0.00057 32.2 8.9 64 191-267 24-87 (211)
73 PF01729 QRPTase_C: Quinolinat 70.8 24 0.00052 31.4 8.0 63 191-266 92-155 (169)
74 PRK05581 ribulose-phosphate 3- 69.6 28 0.00061 31.6 8.5 74 188-266 18-91 (220)
75 cd01310 TatD_DNAse TatD like p 68.0 75 0.0016 29.0 11.2 84 236-331 121-205 (251)
76 TIGR00262 trpA tryptophan synt 67.0 1.2E+02 0.0025 28.8 16.7 77 189-267 27-123 (256)
77 cd07939 DRE_TIM_NifV Streptomy 66.1 1.2E+02 0.0026 28.6 16.7 126 189-332 23-166 (259)
78 PF02581 TMP-TENI: Thiamine mo 66.0 70 0.0015 28.3 10.1 68 188-268 14-81 (180)
79 COG0157 NadC Nicotinate-nucleo 65.7 31 0.00067 33.2 7.9 62 191-266 200-262 (280)
80 PF05120 GvpG: Gas vesicle pro 64.4 22 0.00047 27.6 5.5 36 15-50 35-70 (79)
81 TIGR03217 4OH_2_O_val_ald 4-hy 63.9 1.6E+02 0.0034 29.2 17.4 131 188-332 26-170 (333)
82 PRK06559 nicotinate-nucleotide 62.9 40 0.00087 32.7 8.3 60 191-266 209-269 (290)
83 PRK04452 acetyl-CoA decarbonyl 62.3 1.7E+02 0.0036 28.9 14.5 147 189-351 78-235 (319)
84 cd07948 DRE_TIM_HCS Saccharomy 62.2 1.5E+02 0.0032 28.3 12.4 129 189-332 25-168 (262)
85 PRK05848 nicotinate-nucleotide 62.1 27 0.00059 33.5 7.0 63 191-266 194-257 (273)
86 PRK06978 nicotinate-nucleotide 61.0 45 0.00097 32.5 8.3 60 191-266 217-277 (294)
87 cd01304 FMDH_A Formylmethanofu 60.0 24 0.00053 37.2 6.7 55 199-256 190-248 (541)
88 TIGR03121 one_C_dehyd_A formyl 58.8 29 0.00063 36.8 7.1 54 200-256 195-252 (556)
89 PRK02615 thiamine-phosphate py 58.7 80 0.0017 31.5 9.8 66 188-266 159-224 (347)
90 PRK06543 nicotinate-nucleotide 58.4 53 0.0012 31.7 8.3 60 191-266 205-265 (281)
91 PRK07896 nicotinate-nucleotide 58.0 57 0.0012 31.7 8.4 63 191-266 211-274 (289)
92 cd04735 OYE_like_4_FMN Old yel 57.7 85 0.0019 31.2 10.0 90 176-266 135-255 (353)
93 PRK08999 hypothetical protein; 57.4 55 0.0012 31.6 8.4 66 189-267 147-212 (312)
94 PF00682 HMGL-like: HMGL-like 57.0 1.3E+02 0.0029 27.6 10.7 143 189-357 17-180 (237)
95 PRK08385 nicotinate-nucleotide 56.5 63 0.0014 31.2 8.4 65 191-266 194-259 (278)
96 TIGR00693 thiE thiamine-phosph 56.4 1.1E+02 0.0023 27.3 9.6 67 188-267 15-81 (196)
97 PRK01060 endonuclease IV; Prov 56.2 86 0.0019 29.6 9.4 30 237-266 2-32 (281)
98 TIGR02660 nifV_homocitr homoci 56.1 2.2E+02 0.0048 28.4 16.4 125 190-332 27-169 (365)
99 PRK07695 transcriptional regul 55.6 99 0.0021 27.8 9.3 59 195-267 23-81 (201)
100 cd03174 DRE_TIM_metallolyase D 55.3 1.8E+02 0.0038 27.0 14.5 133 189-331 22-172 (265)
101 COG0352 ThiE Thiamine monophos 55.0 90 0.002 28.8 8.9 66 189-267 24-89 (211)
102 PRK07428 nicotinate-nucleotide 54.7 77 0.0017 30.8 8.8 63 191-266 208-271 (288)
103 TIGR01334 modD putative molybd 54.1 74 0.0016 30.7 8.5 63 191-266 200-263 (277)
104 PF01026 TatD_DNase: TatD rela 54.0 71 0.0015 30.0 8.4 96 221-331 112-209 (255)
105 cd01096 Alkanal_monooxygenase 53.8 25 0.00054 34.2 5.4 42 299-343 272-313 (315)
106 PRK06106 nicotinate-nucleotide 53.5 65 0.0014 31.1 8.0 60 191-266 206-266 (281)
107 PRK06512 thiamine-phosphate py 53.0 1.9E+02 0.0041 26.7 12.3 65 190-267 30-95 (221)
108 COG1099 Predicted metal-depend 52.0 2.1E+02 0.0045 26.9 13.6 128 201-345 96-230 (254)
109 cd00951 KDGDH 5-dehydro-4-deox 51.7 2.3E+02 0.0049 27.2 12.2 77 186-266 21-101 (289)
110 PRK13585 1-(5-phosphoribosyl)- 50.9 1.4E+02 0.003 27.5 9.8 81 191-280 37-120 (241)
111 PRK12331 oxaloacetate decarbox 50.9 79 0.0017 32.7 8.7 71 188-265 156-228 (448)
112 PRK14041 oxaloacetate decarbox 50.8 76 0.0017 33.0 8.5 71 187-264 154-226 (467)
113 PRK07028 bifunctional hexulose 50.7 2.6E+02 0.0057 28.5 12.5 116 191-327 21-140 (430)
114 COG2355 Zn-dependent dipeptida 50.7 2.6E+02 0.0056 27.5 15.3 100 249-351 173-287 (313)
115 PRK03620 5-dehydro-4-deoxygluc 50.6 2.4E+02 0.0053 27.2 12.2 77 186-266 28-108 (303)
116 KOG2367 Alpha-isopropylmalate 50.4 1.7E+02 0.0037 30.5 10.6 136 188-331 81-261 (560)
117 TIGR03128 RuMP_HxlA 3-hexulose 50.1 1.9E+02 0.0041 25.9 12.5 115 191-328 17-136 (206)
118 TIGR02320 PEP_mutase phosphoen 49.1 2.6E+02 0.0055 27.1 15.1 149 187-356 93-262 (285)
119 cd00423 Pterin_binding Pterin 48.5 2.4E+02 0.0052 26.6 17.4 151 187-346 25-192 (258)
120 PF00809 Pterin_bind: Pterin b 48.2 2.2E+02 0.0047 26.0 15.0 147 192-347 25-190 (210)
121 cd04733 OYE_like_2_FMN Old yel 47.7 1.5E+02 0.0032 29.2 9.8 88 178-265 141-255 (338)
122 cd07942 DRE_TIM_LeuA Mycobacte 47.2 1.4E+02 0.003 28.9 9.2 22 190-211 27-48 (284)
123 PRK03170 dihydrodipicolinate s 47.0 1.2E+02 0.0027 28.9 9.0 78 186-266 22-103 (292)
124 cd00452 KDPG_aldolase KDPG and 46.9 2.1E+02 0.0046 25.5 10.0 107 189-326 19-125 (190)
125 TIGR03558 oxido_grp_1 lucifera 46.4 32 0.0007 33.5 4.9 46 297-346 276-321 (323)
126 PRK12290 thiE thiamine-phospha 46.1 98 0.0021 31.9 8.3 63 191-266 222-284 (437)
127 cd00408 DHDPS-like Dihydrodipi 45.6 1.5E+02 0.0034 28.0 9.4 78 186-266 18-99 (281)
128 PRK06096 molybdenum transport 45.4 1.2E+02 0.0025 29.4 8.4 63 191-266 201-264 (284)
129 PLN03228 methylthioalkylmalate 45.2 1.3E+02 0.0028 31.6 9.3 22 190-211 110-131 (503)
130 cd02930 DCR_FMN 2,4-dienoyl-Co 45.2 1.6E+02 0.0034 29.2 9.6 89 176-265 128-243 (353)
131 cd01301 rDP_like renal dipepti 44.3 3.1E+02 0.0068 26.7 13.9 57 272-331 210-269 (309)
132 PRK12330 oxaloacetate decarbox 44.1 1.4E+02 0.003 31.3 9.3 71 187-264 156-230 (499)
133 PRK00366 ispG 4-hydroxy-3-meth 43.9 3.5E+02 0.0075 27.1 15.7 25 186-210 42-66 (360)
134 TIGR01163 rpe ribulose-phospha 42.9 2.4E+02 0.0053 25.0 14.4 73 187-267 12-87 (210)
135 PF03437 BtpA: BtpA family; I 42.8 3E+02 0.0066 26.1 15.8 148 181-333 24-188 (254)
136 PLN02898 HMP-P kinase/thiamin- 42.7 1.7E+02 0.0036 30.6 9.8 66 189-267 310-375 (502)
137 cd02803 OYE_like_FMN_family Ol 42.7 2E+02 0.0044 27.8 9.9 90 176-266 132-248 (327)
138 PRK09140 2-dehydro-3-deoxy-6-p 42.6 2.7E+02 0.0058 25.4 10.7 98 190-312 26-123 (206)
139 TIGR03858 LLM_2I7G probable ox 42.3 46 0.001 32.7 5.3 33 298-330 283-315 (337)
140 PRK09016 quinolinate phosphori 42.2 1.4E+02 0.003 29.1 8.4 60 191-266 220-280 (296)
141 TIGR01859 fruc_bis_ald_ fructo 42.2 3.2E+02 0.007 26.3 16.0 77 192-272 33-110 (282)
142 TIGR01108 oadA oxaloacetate de 42.1 1.2E+02 0.0027 32.4 8.7 72 187-265 150-223 (582)
143 PF03786 UxuA: D-mannonate deh 42.0 1.8E+02 0.0038 29.1 9.2 71 176-249 176-248 (351)
144 PRK05742 nicotinate-nucleotide 41.8 93 0.002 30.0 7.1 60 191-266 201-261 (277)
145 PRK03906 mannonate dehydratase 41.4 70 0.0015 32.4 6.4 70 176-248 204-275 (385)
146 PRK14042 pyruvate carboxylase 41.4 1.1E+02 0.0025 32.8 8.3 72 187-265 155-228 (596)
147 COG0084 TatD Mg-dependent DNas 41.3 3.2E+02 0.007 26.0 14.6 83 236-332 125-210 (256)
148 PLN02716 nicotinate-nucleotide 41.2 74 0.0016 31.2 6.3 66 191-266 215-290 (308)
149 cd02931 ER_like_FMN Enoate red 40.6 2.6E+02 0.0057 28.1 10.5 68 176-244 141-226 (382)
150 PRK14847 hypothetical protein; 39.8 3.9E+02 0.0084 26.5 11.8 70 192-270 60-134 (333)
151 PRK09282 pyruvate carboxylase 38.9 1.4E+02 0.003 32.1 8.5 71 187-264 155-227 (592)
152 COG4586 ABC-type uncharacteriz 38.7 1.1E+02 0.0024 29.7 6.9 44 199-244 174-217 (325)
153 TIGR00510 lipA lipoate synthas 37.9 3.9E+02 0.0085 26.0 12.1 126 188-325 96-242 (302)
154 COG0329 DapA Dihydrodipicolina 37.3 3.1E+02 0.0067 26.6 10.1 78 186-266 25-106 (299)
155 COG1902 NemA NADH:flavin oxido 37.3 2.4E+02 0.0052 28.3 9.4 90 176-266 140-258 (363)
156 cd01572 QPRTase Quinolinate ph 36.5 1.3E+02 0.0027 28.9 7.1 60 191-266 194-254 (268)
157 cd00950 DHDPS Dihydrodipicolin 35.7 2.4E+02 0.0053 26.7 9.0 78 186-266 21-102 (284)
158 PRK12581 oxaloacetate decarbox 35.2 1.9E+02 0.0042 30.1 8.6 71 188-265 165-237 (468)
159 PRK08255 salicylyl-CoA 5-hydro 35.1 1.7E+02 0.0038 32.3 8.8 86 181-266 546-658 (765)
160 PRK05692 hydroxymethylglutaryl 34.7 2E+02 0.0043 27.8 8.2 70 188-264 157-229 (287)
161 COG0148 Eno Enolase [Carbohydr 34.4 4.3E+02 0.0094 26.9 10.4 175 176-353 173-409 (423)
162 cd00947 TBP_aldolase_IIB Tagat 34.2 4.3E+02 0.0094 25.4 13.9 129 191-332 29-173 (276)
163 PF00036 EF-hand_1: EF hand; 34.2 42 0.0009 20.5 2.2 25 16-40 1-28 (29)
164 TIGR03249 KdgD 5-dehydro-4-deo 34.2 4.3E+02 0.0093 25.3 12.2 77 186-266 26-106 (296)
165 cd00952 CHBPH_aldolase Trans-o 33.7 2.9E+02 0.0064 26.8 9.3 78 186-266 29-110 (309)
166 PRK10605 N-ethylmaleimide redu 33.6 3.6E+02 0.0077 26.9 10.1 27 181-207 154-180 (362)
167 PRK05096 guanosine 5'-monophos 33.5 2E+02 0.0044 28.6 8.0 90 250-354 111-211 (346)
168 COG3010 NanE Putative N-acetyl 33.4 3.7E+02 0.008 25.0 9.0 67 187-264 86-152 (229)
169 PRK14040 oxaloacetate decarbox 33.4 1.7E+02 0.0038 31.4 8.2 72 187-265 156-229 (593)
170 PRK11858 aksA trans-homoaconit 33.2 5.1E+02 0.011 25.9 17.1 135 190-345 30-183 (378)
171 TIGR00683 nanA N-acetylneurami 32.7 2.4E+02 0.0051 27.1 8.4 78 186-266 21-103 (290)
172 TIGR02313 HpaI-NOT-DapA 2,4-di 32.7 3.1E+02 0.0067 26.4 9.3 78 186-266 21-102 (294)
173 TIGR00674 dapA dihydrodipicoli 32.2 3.2E+02 0.0069 26.0 9.2 78 186-266 19-100 (285)
174 PRK11613 folP dihydropteroate 32.1 4.7E+02 0.01 25.2 18.3 147 190-345 42-204 (282)
175 cd07943 DRE_TIM_HOA 4-hydroxy- 32.1 2.3E+02 0.0051 26.6 8.2 69 188-263 143-214 (263)
176 PRK08508 biotin synthase; Prov 32.1 4.5E+02 0.0098 25.0 16.0 122 193-325 50-186 (279)
177 PRK08645 bifunctional homocyst 31.9 6.7E+02 0.015 26.9 15.8 136 182-332 121-275 (612)
178 cd00019 AP2Ec AP endonuclease 31.9 4.3E+02 0.0094 24.7 11.1 68 180-247 79-147 (279)
179 PRK03739 2-isopropylmalate syn 31.8 2.4E+02 0.0053 30.0 8.9 98 191-317 57-158 (552)
180 PRK13125 trpA tryptophan synth 31.8 4.3E+02 0.0092 24.6 14.0 71 193-266 25-108 (244)
181 PRK07998 gatY putative fructos 31.5 4.9E+02 0.011 25.2 12.4 129 192-333 35-179 (283)
182 COG1839 Uncharacterized conser 31.5 33 0.00071 29.6 1.9 31 286-317 127-158 (162)
183 COG1850 RbcL Ribulose 1,5-bisp 31.3 5.8E+02 0.013 26.0 10.9 89 186-280 171-269 (429)
184 COG5126 FRQ1 Ca2+-binding prot 31.0 35 0.00077 30.1 2.1 59 10-68 87-151 (160)
185 cd07937 DRE_TIM_PC_TC_5S Pyruv 31.0 4.7E+02 0.01 24.9 15.7 131 191-332 26-176 (275)
186 cd00958 DhnA Class I fructose- 31.0 4.2E+02 0.009 24.2 13.9 124 190-327 80-216 (235)
187 COG3867 Arabinogalactan endo-1 30.8 4.4E+02 0.0096 25.9 9.5 90 176-266 146-251 (403)
188 PRK12738 kbaY tagatose-bisphos 30.8 5E+02 0.011 25.1 14.6 129 191-332 34-180 (286)
189 PF00701 DHDPS: Dihydrodipicol 30.6 3.1E+02 0.0068 26.1 8.9 78 186-266 22-103 (289)
190 cd02933 OYE_like_FMN Old yello 29.9 5.3E+02 0.011 25.4 10.5 87 179-266 145-261 (338)
191 PRK06843 inosine 5-monophospha 29.8 2E+02 0.0043 29.4 7.5 68 188-265 154-221 (404)
192 cd08205 RuBisCO_IV_RLP Ribulos 29.8 5.8E+02 0.013 25.5 11.0 94 186-280 146-244 (367)
193 TIGR00078 nadC nicotinate-nucl 29.6 2.2E+02 0.0047 27.2 7.5 59 191-265 190-249 (265)
194 cd07939 DRE_TIM_NifV Streptomy 29.5 2.9E+02 0.0063 25.9 8.3 69 188-263 141-211 (259)
195 KOG3338 Divalent cation tolera 29.5 22 0.00047 30.2 0.5 36 108-144 109-144 (153)
196 TIGR01235 pyruv_carbox pyruvat 29.3 2.6E+02 0.0057 32.6 9.2 72 187-265 690-763 (1143)
197 PRK07455 keto-hydroxyglutarate 29.1 4.2E+02 0.0091 23.7 10.3 101 191-317 29-129 (187)
198 cd04722 TIM_phosphate_binding 28.8 3.6E+02 0.0079 22.9 10.4 100 188-293 14-122 (200)
199 cd02932 OYE_YqiM_FMN Old yello 28.0 5.8E+02 0.012 24.9 10.7 89 176-265 145-260 (336)
200 cd04747 OYE_like_5_FMN Old yel 27.5 4.5E+02 0.0098 26.3 9.6 89 176-265 135-254 (361)
201 KOG2368 Hydroxymethylglutaryl- 27.3 80 0.0017 29.6 3.8 65 187-258 170-235 (316)
202 PLN02746 hydroxymethylglutaryl 27.3 2.9E+02 0.0062 27.6 8.0 69 189-264 200-271 (347)
203 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.2 3.2E+02 0.0069 26.0 8.2 69 189-264 152-222 (275)
204 cd04734 OYE_like_3_FMN Old yel 27.1 3.6E+02 0.0077 26.7 8.8 89 176-265 132-248 (343)
205 PRK08195 4-hyroxy-2-oxovalerat 27.1 1.9E+02 0.0042 28.6 6.8 70 188-263 146-218 (337)
206 PRK07709 fructose-bisphosphate 27.1 5.8E+02 0.013 24.7 15.3 127 195-331 38-180 (285)
207 PRK09517 multifunctional thiam 27.0 3.8E+02 0.0082 29.7 9.7 22 190-211 23-44 (755)
208 COG0419 SbcC ATPase involved i 26.7 1.7E+02 0.0036 33.1 7.1 53 189-244 829-883 (908)
209 PRK06801 hypothetical protein; 26.5 4.7E+02 0.01 25.3 9.2 73 193-271 36-109 (286)
210 PRK09197 fructose-bisphosphate 26.0 6.8E+02 0.015 25.1 13.3 159 195-357 41-244 (350)
211 COG1242 Predicted Fe-S oxidore 25.9 6.3E+02 0.014 24.6 12.5 117 220-356 168-298 (312)
212 PLN02417 dihydrodipicolinate s 25.8 4.9E+02 0.011 24.8 9.2 78 186-266 22-103 (280)
213 PRK13523 NADPH dehydrogenase N 25.6 4E+02 0.0086 26.3 8.7 32 176-208 133-164 (337)
214 COG4030 Uncharacterized protei 25.6 2.3E+02 0.005 26.8 6.4 64 13-79 138-206 (315)
215 PRK12999 pyruvate carboxylase; 25.3 1.1E+03 0.025 27.5 15.3 153 187-357 692-869 (1146)
216 PF00682 HMGL-like: HMGL-like 25.3 2.6E+02 0.0055 25.6 7.0 68 190-264 141-211 (237)
217 PF00478 IMPDH: IMP dehydrogen 25.3 2.5E+02 0.0054 28.1 7.2 66 189-266 110-177 (352)
218 PRK09856 fructoselysine 3-epim 25.1 5.6E+02 0.012 23.8 12.1 28 239-266 5-33 (275)
219 PRK11449 putative deoxyribonuc 24.8 5.9E+02 0.013 23.9 14.8 84 236-331 127-211 (258)
220 PF01261 AP_endonuc_2: Xylose 24.6 2.6E+02 0.0057 24.3 6.8 86 181-266 66-164 (213)
221 PF04008 Adenosine_kin: Adenos 24.6 36 0.00077 29.5 0.9 26 286-311 120-146 (155)
222 cd06556 ICL_KPHMT Members of t 24.5 5.1E+02 0.011 24.3 8.8 124 196-324 29-175 (240)
223 TIGR00970 leuA_yeast 2-isoprop 24.4 3.4E+02 0.0074 29.0 8.4 98 191-317 53-154 (564)
224 PRK11320 prpB 2-methylisocitra 24.4 6.6E+02 0.014 24.4 16.3 146 189-354 96-254 (292)
225 PRK08072 nicotinate-nucleotide 24.3 3.7E+02 0.008 25.9 8.0 59 192-266 201-260 (277)
226 TIGR02317 prpB methylisocitrat 24.1 6.6E+02 0.014 24.3 16.1 148 189-356 91-251 (285)
227 PRK09875 putative hydrolase; P 24.1 6.6E+02 0.014 24.3 14.9 91 236-332 152-248 (292)
228 TIGR02660 nifV_homocitr homoci 23.7 3.8E+02 0.0082 26.7 8.3 65 193-264 149-215 (365)
229 cd07944 DRE_TIM_HOA_like 4-hyd 23.7 2.6E+02 0.0056 26.6 6.8 70 189-264 141-213 (266)
230 cd06557 KPHMT-like Ketopantoat 23.4 5.1E+02 0.011 24.6 8.7 59 221-280 59-125 (254)
231 COG3845 ABC-type uncharacteriz 23.4 1.7E+02 0.0037 30.6 5.7 36 176-212 133-171 (501)
232 PRK10425 DNase TatD; Provision 22.9 6.4E+02 0.014 23.7 10.3 84 236-331 121-207 (258)
233 PLN02428 lipoic acid synthase 22.7 7.8E+02 0.017 24.6 11.4 126 191-324 138-281 (349)
234 PRK09195 gatY tagatose-bisphos 22.6 7E+02 0.015 24.1 14.7 127 193-332 36-180 (284)
235 cd02810 DHOD_DHPD_FMN Dihydroo 22.5 2.8E+02 0.0061 26.3 6.9 73 191-266 116-196 (289)
236 TIGR03217 4OH_2_O_val_ald 4-hy 22.3 2.6E+02 0.0057 27.6 6.7 70 188-263 145-217 (333)
237 cd07938 DRE_TIM_HMGL 3-hydroxy 22.3 4E+02 0.0087 25.4 7.8 72 186-264 149-223 (274)
238 PRK07084 fructose-bisphosphate 21.9 7.8E+02 0.017 24.3 14.9 133 193-333 42-190 (321)
239 TIGR00612 ispG_gcpE 1-hydroxy- 21.8 8.1E+02 0.017 24.4 15.2 25 186-210 34-58 (346)
240 PRK02412 aroD 3-dehydroquinate 21.8 6.7E+02 0.015 23.5 12.0 63 250-316 99-164 (253)
241 TIGR02319 CPEP_Pphonmut carbox 21.7 7.5E+02 0.016 24.0 14.9 149 189-357 95-256 (294)
242 COG1122 CbiO ABC-type cobalt t 21.5 2.3E+02 0.0051 26.5 5.9 46 195-242 152-197 (235)
243 PRK07107 inosine 5-monophospha 21.4 4.1E+02 0.0088 27.9 8.2 67 188-265 243-311 (502)
244 COG5016 Pyruvate/oxaloacetate 21.4 9.1E+02 0.02 24.9 10.2 84 187-280 99-196 (472)
245 cd00954 NAL N-Acetylneuraminic 21.2 6.6E+02 0.014 23.9 9.2 78 186-266 21-103 (288)
246 COG3669 Alpha-L-fucosidase [Ca 21.1 2E+02 0.0043 29.3 5.5 75 300-377 265-351 (430)
247 TIGR03278 methan_mark_10 putat 20.8 6.6E+02 0.014 25.6 9.4 115 190-318 119-244 (404)
248 PRK12928 lipoyl synthase; Prov 20.3 7.8E+02 0.017 23.7 11.9 130 190-328 94-242 (290)
249 TIGR01858 tag_bisphos_ald clas 20.3 7.8E+02 0.017 23.7 15.0 74 192-272 33-108 (282)
250 PF06187 DUF993: Protein of un 20.3 1.7E+02 0.0037 29.1 4.7 62 179-244 125-186 (382)
251 cd07941 DRE_TIM_LeuA3 Desulfob 20.2 5.7E+02 0.012 24.2 8.4 72 186-264 151-225 (273)
No 1
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=100.00 E-value=2.1e-78 Score=646.26 Aligned_cols=353 Identities=54% Similarity=0.956 Sum_probs=327.3
Q ss_pred CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCC
Q 016581 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (387)
Q Consensus 1 ~~tt~vG~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~ 80 (387)
|+||++||||+|++||||+|+|+||+|+||.++|+++.+++++++|+.|+++|||+||||||+|||||+|++++||+||+
T Consensus 2 ~~~~~lGyPRiG~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~~Gld~it~Gdfs~yd~vLD~~~~lg~ip~ 81 (758)
T PRK05222 2 IKTHILGFPRIGPRRELKKALESYWAGKISEEELLATARELRARHWQRQKEAGLDLIPVGDFSYYDHVLDTAVLLGAIPE 81 (758)
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEeccCCcccHHHHHHHHHHhCCCch
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhCCCCCCceeecHHH
Q 016581 81 RFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVS 160 (387)
Q Consensus 81 r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~g~~~k~~l~GP~t 160 (387)
||....+..+++.||+++||..+.++++|||||||||||++|++++++++++..++++++|++|++.|.++|++||||+|
T Consensus 82 rf~~~~~~~~~~~yF~~arg~~~~~~~emtKwF~tNYhY~VPei~g~~~~~~~~~~~l~e~~~ak~~g~~~K~vl~GP~T 161 (758)
T PRK05222 82 RFGNLGGSVDLDTYFAMARGGKDVAALEMTKWFNTNYHYIVPEFDPDTQFKLTSNKLLDEFEEAKALGINTKPVLLGPVT 161 (758)
T ss_pred hhccccCCCccccceecccCCCCcccccceEEecCCCceeCcEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEccHHH
Confidence 99765445578899999999766668999999999999999999999999877889999999999998899999999999
Q ss_pred HHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHH---------------------
Q 016581 161 YLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKL--------------------- 219 (387)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~--------------------- 219 (387)
|+.+++....| ++..+++++|+++|++++++|+++||+|||||||+|+.+++.+..
T Consensus 162 ~l~ls~~~~~~---~~~~ell~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l 238 (758)
T PRK05222 162 FLWLSKSKGEG---FDRLDLLDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLL 238 (758)
T ss_pred HHHHhcccccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 99888731122 278999999999999999999999999999999999987663321
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 239 ~tyfg~~~~~~~~l~~l~Vd~l~LD~~~~~~~l~~l~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~ve~L~l 318 (758)
T PRK05222 239 ATYFGSLNDALDLLASLPVDGLHLDLVRGPEQLAALLKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKVDRLWV 318 (758)
T ss_pred EeeccchhhHHHHHHcCCCCEEEEEeeCCccchHHHHhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhhccEEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 319 spsCgL~~vP~~~~~E~~l~~~~~~~~afa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 398 (758)
T PRK05222 319 APSCSLLHVPVDLDAETKLDPELKSWLAFAKQKLEELALLARALNGGRGAVAEALAANRAAIAARRTSPRVHNPAVRARL 398 (758)
T ss_pred eCCCCCcCCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhCCccCCHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 399 ~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~IGSfPrp~~l~~ar~~~~~g~i~~~~~~~~~~~~i~~~V~~Qe~~G 478 (758)
T PRK05222 399 AALTEADFQRQSPYAERAAAQRARLNLPLLPTTTIGSFPQTTEIRKARAAFKKGELSEEEYEAFIREEIARAIRLQEELG 478 (758)
T ss_pred HhCCHhhcccCCcHHHHHHHHHHHhCCCCCcccccCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 479 lDvltdGE~~R~d~v~~F~~~l~Gf~~~~~g~v~~~g~~~~r~p~i~G~i~~~~p~~v~~~~~aq~~t~~~vK~~ltGP~ 558 (758)
T PRK05222 479 LDVLVHGEFERNDMVEYFGEQLDGFAFTQNGWVQSYGSRCVKPPIIYGDVSRPEPMTVEWIKYAQSLTDKPVKGMLTGPV 558 (758)
T ss_pred CCEeecCceeeeehHHHHHHhCCCeeecCCceeeeeCCcCCCCCeeeCCCcCCCCCchHHHHHHHhccCCCCcEEEecHH
Confidence
Q ss_pred --------------------------------------------------------------HHHHHHHHHHHcCCCCCc
Q 016581 220 --------------------------------------------------------------QAFIHSFRITNCGIQDTT 237 (387)
Q Consensus 220 --------------------------------------------------------------~~a~~~~~~~~~~~~~~~ 237 (387)
+++++++|.+++++++++
T Consensus 559 T~~~~s~~r~~~~~~e~~~dlA~al~~Ev~~L~~aG~~~IQiDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~~~ 638 (758)
T PRK05222 559 TILNWSFVRDDQPREETARQIALAIRDEVLDLEAAGIKIIQIDEPALREGLPLRRSDWDAYLDWAVEAFRLATSGVKDET 638 (758)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCchhhhcCcccccCHHHHHHHHHHHHHHHHcCCCCCC
Confidence 037899999999999999
Q ss_pred eEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 016581 238 QIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVL 317 (387)
Q Consensus 238 ~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v 317 (387)
+|+||+|||||.++++.|.++++|+|++|++|+++++|+.|++ .++++.|++||||+||+++|++|+|++||+++++++
T Consensus 639 ~i~tH~C~g~~~~i~~~i~~l~vD~~~lE~~rs~~e~L~~~~~-~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v 717 (758)
T PRK05222 639 QIHTHMCYSEFNDIIDAIAALDADVISIETSRSDMELLDAFED-FGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVI 717 (758)
T ss_pred EEEEEEeccChHHHHHHHHhCCCCEEEEEecCCCchhHHHhhc-cCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998988999999988 566788999999999999999999999999999999
Q ss_pred CCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016581 318 ETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLT 357 (387)
Q Consensus 318 ~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~l~ 357 (387)
|++++||||||||++++++++++||++|+++|+.+|++|+
T Consensus 718 ~~e~l~v~PdCGl~t~~~~~~~~kL~~mv~aa~~~r~~~~ 757 (758)
T PRK05222 718 PAERLWVNPDCGLKTRGWEETIAALKNMVAAAKELRAELA 757 (758)
T ss_pred ChheEEEeCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999986
No 2
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=100.00 E-value=9.5e-78 Score=638.13 Aligned_cols=357 Identities=87% Similarity=1.360 Sum_probs=327.7
Q ss_pred CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCC
Q 016581 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (387)
Q Consensus 1 ~~tt~vG~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~ 80 (387)
|+||++||||+|++||||+|+|+||+|+++.++|+++.+++++++|+.|+++|||+||||||+|||||+|++.+||.||+
T Consensus 1 ~~~~~lGyPRig~~ReLKka~e~yw~G~is~eeL~~~~~~~~~~~~~~Q~~aGld~ItdGdfsryD~vLD~~~m~g~ip~ 80 (766)
T PLN02475 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSAAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (766)
T ss_pred CCccccCCCCCCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCcchhHHHHhHHHHhccchh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhCCCCCCceeecHHH
Q 016581 81 RFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVS 160 (387)
Q Consensus 81 r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~g~~~k~~l~GP~t 160 (387)
||+...|..+++.||+|+||..++++++|+|||||||||++|++.+++.|++..+.+++++++|+++|+..||+|+||+|
T Consensus 81 r~~~~~g~~~l~~yfamaRG~~~~~a~emtKwFdtNYHY~VPe~~~~~~f~~~~~~~l~e~~eA~~~g~~~kpVl~GP~T 160 (766)
T PLN02475 81 RYGWTGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVKFSYASHKAVNEYKEAKALGVDTVPVLVGPVS 160 (766)
T ss_pred hhhccCCcchHHHHHHHhcCCcccccccceEEecCCcceECcEECCCCccccCccchHHHHHHHHHcCCCCCcEEECHHH
Confidence 99754444569999999999546778999999999999999999999998888889999999999999889999999999
Q ss_pred HHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHH---------------------
Q 016581 161 YLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKL--------------------- 219 (387)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~--------------------- 219 (387)
|+.+++....|+..+++.+++++|+++|++++++|.++||.|||||||+|+.+++.++.
T Consensus 161 ~l~Lsk~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~~~i~l 240 (766)
T PLN02475 161 YLLLSKPAKGVDKSFDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAYAELESTLSGLNVLV 240 (766)
T ss_pred HHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 99999864323222368999999999999999999999999999999999998764321
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 241 ~TyFg~~~~~~~~~l~~lp~Vd~l~lD~v~~~~~L~~l~~~~~p~~k~L~~GVVDgRNiw~~dl~~~~~~i~~~~~~~~~ 320 (766)
T PLN02475 241 ETYFADVPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLIKKAGFPSGKYLFAGVVDGRNIWANDLAASLATLQALEGIVGK 320 (766)
T ss_pred EccCCCCCHHHHHHHHcCCCCCEEEEEecCChhhHHHHHhccCCCCCeEEEEEEeCCCcccCCHHHHHHHHHHHHHhcCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 321 ~~l~v~psCsLlhvP~~~~~e~~l~~~~~~~~afa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 400 (766)
T PLN02475 321 DKLVVSTSCSLLHTAVDLVNETKLDKELKSWLAFAAQKVVEVVALAKALAGQKDEAFFSANAAAQASRRSSPRVTNEAVQ 400 (766)
T ss_pred CcEEEeCCCCCccCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhcCCccCCHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 401 ~~~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~lptT~IGSfPrp~~lr~ar~~~~~G~i~~e~~~~~~~~aI~~~V~~Qe 480 (766)
T PLN02475 401 KAAAALKGSDHRRATPVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKISEEDYVKAIKEEIAKVVKLQE 480 (766)
T ss_pred HHHHhCChhhcccCCcHHHHHHHHHHHhCCCCCCCccccCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 481 ~~GlDvltdGE~~R~dmv~~F~e~L~Gf~~~~~g~v~~~g~~~~r~p~i~G~I~~~~~~~v~~~~~aq~~t~~~vK~~lt 560 (766)
T PLN02475 481 ELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSVAQSMTKRPMKGMLT 560 (766)
T ss_pred HcCCCeeecCceeccchHHHHHHhCCCeeecCCceEEeeCCcCCCCCeEeccccCCCCCCHHHHHHHHhccCCccceEEe
Confidence
Q ss_pred -----------------------------------------------------------------HHHHHHHHHHHcCCC
Q 016581 220 -----------------------------------------------------------------QAFIHSFRITNCGIQ 234 (387)
Q Consensus 220 -----------------------------------------------------------------~~a~~~~~~~~~~~~ 234 (387)
++++++||.+.++++
T Consensus 561 GP~Ti~~~s~~r~~~~~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~~~~~~~~l~~av~af~~~~~~v~ 640 (766)
T PLN02475 561 GPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQ 640 (766)
T ss_pred cHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchhhcCCcCccCHHHHHHHHHHHHHHHHhcCC
Confidence 147889999999998
Q ss_pred CCceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHH
Q 016581 235 DTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMR 314 (387)
Q Consensus 235 ~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~ 314 (387)
++++||+|+|||||.++++.|.++++|+|++|++|++.+.|+.|++.+++++.|++||||+||+.+|++|+|++||++++
T Consensus 641 ~~~~I~~H~C~gnf~~I~~~i~~l~~D~~~~E~~rs~~~~l~~l~~~~~~~~~IglGViD~~s~~ves~Eei~~rI~~a~ 720 (766)
T PLN02475 641 DTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKML 720 (766)
T ss_pred CCCEEEEEEecCCcHHHHHHHHhCCCCEEEEEcCCCChhhhHHHHhhcCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999989877777777542456788999999999999999999999999999
Q ss_pred hhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016581 315 TVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLT 357 (387)
Q Consensus 315 ~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~l~ 357 (387)
+++|++++||||||||++++++++..||++||+||+++|++++
T Consensus 721 ~~v~~e~l~vnPDCGl~tr~~~~~~~kL~~mv~aa~~~r~~~~ 763 (766)
T PLN02475 721 AVLESNILWVNPDCGLKTRKYPEVKPALKNMVAAAKLLRAQLA 763 (766)
T ss_pred HhCCcceEEEcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999986
No 3
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-78 Score=583.36 Aligned_cols=358 Identities=79% Similarity=1.258 Sum_probs=340.6
Q ss_pred CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCC
Q 016581 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (387)
Q Consensus 1 ~~tt~vG~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~ 80 (387)
|+++++||||+|+.||||+|+|.||.|+++.++|.++..+.+.+.|+.|.++|+|+|++++|+.||+|+|...+||.||.
T Consensus 2 ~~S~i~G~PRiGp~RELK~A~E~~W~GKts~ddL~~va~~LR~~~WK~~k~aGv~~IPSN~FS~YDQvlD~t~~~~~vP~ 81 (765)
T KOG2263|consen 2 MASHIVGYPRIGPKRELKFALESFWDGKTSADDLQKVAADLRSSIWKLMKAAGVKIIPSNTFSHYDQVLDTTAMLGAVPP 81 (765)
T ss_pred cccccccCCCcCccHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchhHHHHHHhHHHHhcCCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhCCCCCCceeecHHH
Q 016581 81 RFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVS 160 (387)
Q Consensus 81 r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~g~~~k~~l~GP~t 160 (387)
||++..|..+++.||+|+||..++++++|+||||+||||++|++...++|++..++.+++|.+||++|+.++|++.||+|
T Consensus 82 RYg~~sg~~~lD~yFsM~RG~~~v~A~EM~KWFDsNyHyi~Pe~~~e~~F~~~s~KavdEf~EAK~lGi~T~PVLvGPvs 161 (765)
T KOG2263|consen 82 RYGRTSGEIGLDVYFSMARGNASVPAMEMTKWFDSNYHYIVPELGPEVNFSYASHKAVDEFKEAKALGIDTVPVLVGPVS 161 (765)
T ss_pred ccccccCccchhhhhhhhcCCCCcchHHHhhhhccCceeeccccCCccceeeccchhHHHHHHHHhcCCcccceeecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHH---------------------
Q 016581 161 YLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKL--------------------- 219 (387)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~--------------------- 219 (387)
++++++...+-...+.+..++..+.++|.+.+++|.+||+.|||||||.|+.+|+.+..
T Consensus 162 YL~l~K~aKg~~ks~~~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~l~a~k~AY~~l~~~~~~~~v~l 241 (765)
T KOG2263|consen 162 YLLLSKAAKGVDKSFELLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEKLQAFKGAYAELESTLSGLNVLL 241 (765)
T ss_pred hhheeccccCcccccchHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHHHHHHHHHHHHHHhhccccceee
Confidence 99998865553233478899999999999999999999999999999999999987532
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 242 ~TYF~~v~~~a~~~lk~L~~v~~~~~D~VR~~e~lD~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~d 321 (765)
T KOG2263|consen 242 ATYFADVPAEAYKTLKSLKGVTAFGFDLVRGPETLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGKD 321 (765)
T ss_pred hhhhccCCHHHHHHHhCCcceeeeeeeeeechhhHHHHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 322 kvvVstS~SlLHt~vdL~nE~kld~EiK~w~aFA~qK~~Ev~~l~Ka~sg~~~~a~~eaNa~~~~sR~~Sp~v~~~aV~~ 401 (765)
T KOG2263|consen 322 KVVVSTSCSLLHTAVDLINETKLDAEIKSWLAFAAQKVVEVNALAKALSGQKVEALFEANAAALASRRSSPRVTNEAVQK 401 (765)
T ss_pred eEEEeechhhhccchhhccccccCHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhcchHHHhhccCCCcccHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 402 r~a~v~~~~h~R~t~~~~Rl~~QQk~lnLPl~PTTTIGSFPQTkelR~~R~~f~~~~IS~edY~k~I~~Ei~kVvkfQEe 481 (765)
T KOG2263|consen 402 RVAAVKGSDHRRATPVSARLDAQQKKLNLPLLPTTTIGSFPQTKELRRVRREFKAKKISEEDYVKFIKEEIEKVVKFQEE 481 (765)
T ss_pred HHHhcCcccccccCchhhhhHHHHhhcCCCccccccccCCcchHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHhHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 016581 220 -------------------------------------------------------------------------------- 219 (387)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (387)
T Consensus 482 lgiDVLVHGEpERNDMVeyFGEql~GfaFTvNGWVQSYGSRcVkPPiI~GDvsRPk~MtV~~S~~AQs~TsrPmKGMLTg 561 (765)
T KOG2263|consen 482 LGIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSYAQSMTSRPMKGMLTG 561 (765)
T ss_pred hCccEEecCCcccccHHHHHHhhccceEEEecchhHhhcCcccCCCeeeccccCCCcceeeHHHHHHHHhcCcccccccC
Confidence
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHHcCCCC
Q 016581 220 ----------------------------------------------------------------QAFIHSFRITNCGIQD 235 (387)
Q Consensus 220 ----------------------------------------------------------------~~a~~~~~~~~~~~~~ 235 (387)
.+|+++|+.+.+|+.+
T Consensus 562 PvTiL~WSF~R~D~~~~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR~aE~~~Yl~WAv~aFRi~~sgVqd 641 (765)
T KOG2263|consen 562 PVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLRKAEHSFYLDWAVHAFRITNSGVQD 641 (765)
T ss_pred ceEEEEeccccCCcchhHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcCCCcchhhHHHHHHHHHHHhhhccccccc
Confidence 1699999999999999
Q ss_pred CceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHh
Q 016581 236 TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRT 315 (387)
Q Consensus 236 ~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~ 315 (387)
.++||+|+||+||++|++.+.++++|+++||.+++|...|..|+++..++..+++|+.|.|+|++++.+|+++||.+.++
T Consensus 642 ~TQIHtH~CYSdfndi~~~I~~mDADVitIEnSrsD~kllsvf~~gvkY~~~IGpG~~DIHSPRiPs~dE~~erI~~~l~ 721 (765)
T KOG2263|consen 642 STQIHTHMCYSDFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIAERINKMLA 721 (765)
T ss_pred cchhhhhhhhhhccHHHHHHHhccCcEEEEecCcchHHHHHHHhccCcccCCcCCceecccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998866677789999999999999999999999999999
Q ss_pred hcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 016581 316 VLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLTV 358 (387)
Q Consensus 316 ~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~l~~ 358 (387)
.+|.+.+|++|||||+++.+++....|++|++||+.+|+.|+.
T Consensus 722 ~~~~~~lWvNPDCGLKTR~~~E~~~~L~~Mv~AAk~~R~Q~~~ 764 (765)
T KOG2263|consen 722 VLPQNILWVNPDCGLKTRGYTEVKPALKNMVAAAKLIRSQLAS 764 (765)
T ss_pred hcccccEEECCCcCcccCCCccccHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999873
No 4
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=100.00 E-value=4.6e-76 Score=582.45 Aligned_cols=351 Identities=40% Similarity=0.653 Sum_probs=306.4
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCCC
Q 016581 2 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPR 81 (387)
Q Consensus 2 ~tt~vG~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~r 81 (387)
+||++||||+|++||||+|+|+||+|+||.++|++++++++.++|++|+++|||.||||||+|||||+|++++||+||+|
T Consensus 1 ~~~~~GyPrig~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~~Gl~~it~Gef~~yd~~ld~~~~l~~ip~r 80 (360)
T cd03312 1 KTHILGFPRIGANRELKKALESYWKGKISEEELLATAKELRLRHWKLQKEAGIDLIPVGDFSLYDHVLDTSVLLGAIPER 80 (360)
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCchhHHHHHHHHHHhCCCchh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhCCCCCCceeecHHHH
Q 016581 82 FNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSY 161 (387)
Q Consensus 82 ~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~g~~~k~~l~GP~tl 161 (387)
|....+..+++.||+++||....++++|||||||||||++|++.+++.+++..++++++|+++++.+.++|++||||+||
T Consensus 81 ~~~~~~~~~~~~yf~~arg~~~~~~~~mtk~f~tNyhY~vPei~~~~~~~~~~~~~l~~~~~a~~~~~~~K~~i~GP~T~ 160 (360)
T cd03312 81 FGALGGLVDLDTYFAMARGNQDVPALEMTKWFDTNYHYIVPELSPDTEFKLASNKLLDEYLEAKALGINTKPVLLGPVTF 160 (360)
T ss_pred hccccCCccHHHHHHHhcCCCCCcchhceeEecCCCceeCcEECCCcccccCcchHHHHHHHHHhcCCCCcEEEECHHHH
Confidence 97654446788999999997566779999999999999999999999987777899999999999988899999999999
Q ss_pred HHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEE
Q 016581 162 LLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHT 241 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~l 241 (387)
+.+++....|. +.++++++|+++|++++++|+++||++||||||+|+.+++.+..+.+.+++|.+.++++. ..+++
T Consensus 161 ~~ls~~~~~Y~---~~~el~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~l 236 (360)
T cd03312 161 LKLSKAKGGGF---DRLSLLDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAPG-LKLLL 236 (360)
T ss_pred HHHhcccccCC---CHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCCC-CcEEE
Confidence 98887432132 789999999999999999999999999999999999987766777899999999988863 57889
Q ss_pred EecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCc
Q 016581 242 HMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNI 321 (387)
Q Consensus 242 H~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~ 321 (387)
|+|+|++..+++.+.+++||++++|..+. .+.++.+++..+.+|.|++||||++|+++|++++++++|+++.+++ +++
T Consensus 237 ~tyfg~~~~~~~~l~~l~Vd~l~le~~~~-~~~l~~l~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~~ 314 (360)
T cd03312 237 ATYFGSLGENLDLLASLPVDGLHLDLVRG-PENLEAVLKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAIL-GDR 314 (360)
T ss_pred EecccchHHHHHHHHcCCCCEEEEEecCC-cccHHHHHhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHh-cCc
Confidence 99999999999999999999999996654 2333334331122678999999999999999999999999999999 899
Q ss_pred EEEcCCCCCCCCChhhHHH-----HHHHHHHHHHHHHHHhCC
Q 016581 322 LWVNPDCGLKTRKYTEVKP-----ALSNMVAATKLLRTQLTV 358 (387)
Q Consensus 322 l~isPdCGl~~~~~~~a~~-----kL~~lv~~a~~~r~~l~~ 358 (387)
+||+|||||.++|++...+ .++.....|++--+|+..
T Consensus 315 l~lsp~CgL~~lP~~~~~e~~~~~~~~~~lafa~~k~~e~~~ 356 (360)
T cd03312 315 LVVSPSCSLLHVPVDLENETKLDPELKSWLAFAKQKLEELAL 356 (360)
T ss_pred EEEECCCCCcCCCcccccccCCCHHHHhhcchHHHHHHHHHH
Confidence 9999999999998875433 445555555555555543
No 5
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=100.00 E-value=1.2e-68 Score=515.03 Aligned_cols=308 Identities=41% Similarity=0.732 Sum_probs=246.7
Q ss_pred ceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCCC
Q 016581 2 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPR 81 (387)
Q Consensus 2 ~tt~vG~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~r 81 (387)
|||++||||||+.||||+|.|+||+|++|+++|+++.++.+.+.|+.|+++|||.||+|+|+|||+|||++.+||.||+|
T Consensus 1 kt~~lGyPRiG~~RELK~alE~yW~g~~~~~~L~~~~~~lr~~~w~~q~~agld~ip~gdfs~YD~vLD~~~~~g~iP~r 80 (310)
T PF08267_consen 1 KTHILGYPRIGPNRELKKALEAYWKGKISEEELEQTAKELRKEHWQLQKEAGLDLIPVGDFSLYDHVLDTAVLLGAIPER 80 (310)
T ss_dssp -EE-S---SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHTT-SBEEES---SS-HHHHHHHHTT---GG
T ss_pred CCccccCCCCCCChHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCchhhHHHHHHHHhccCChh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhCCCCCCceeecHHHH
Q 016581 82 FNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSY 161 (387)
Q Consensus 82 ~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~g~~~k~~l~GP~tl 161 (387)
|+...+..+++.||+|+||..++++++|||||||||||+||++++++.|++..+++++++++|+++|+.+||+|+||+||
T Consensus 81 f~~~~~~~~l~~yFamARG~~~~~a~eMtKWFdTNYHY~VPE~~~~~~f~l~~~~~~~~~~eA~~~G~~~kpvL~GP~Tf 160 (310)
T PF08267_consen 81 FRHADGLDDLDRYFAMARGTDDVPALEMTKWFDTNYHYIVPEITGDTEFKLDSNKLLDEFREAKALGINTKPVLPGPVTF 160 (310)
T ss_dssp GCT-TSSSSHHHHHHHHHSCCCCT--EEEESTTSS-EEEE-EE-TTS----SCCHHHHHHHHHHHTTGGEEEEEE-HHHH
T ss_pred hccCCCCCCHhheeeeccCCCCCchHHHHHHhccCCCeEceEECCCCceeeCcchHHHHHHHHHhhhcCCeeEEEcHHHH
Confidence 98656677899999999999899999999999999999999999999999888999999999999999999999999999
Q ss_pred HHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEE
Q 016581 162 LLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHT 241 (387)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~l 241 (387)
+++++.... . ++.+++++|+++|+++++.|.++||.|||||||+|+.+++.++.+.+..+++.... ..+..+.+
T Consensus 161 L~Lsk~~~~--~--~~~~ll~~l~~vY~~ll~~L~~~G~~~VQldEP~Lv~d~~~~~~~~~~~aY~~L~~--~~~~~ill 234 (310)
T PF08267_consen 161 LLLSKNEDG--S--DPLDLLDDLLPVYAELLKELAAAGVEWVQLDEPALVLDLPEEWLEAFEEAYEELAA--APRPKILL 234 (310)
T ss_dssp HHTSEETTC--C--HHHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHCC--TTTSEEEE
T ss_pred HHHcCcCCC--C--CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCeeecCCCHHHHHHHHHHHHHHhc--CCCCcEEE
Confidence 999974321 1 57899999999999999999999999999999999999888777788888888763 33567888
Q ss_pred EecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhh-ccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhh
Q 016581 242 HMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFRE-GVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTV 316 (387)
Q Consensus 242 H~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~-~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~ 316 (387)
+..+|+..+.++.+.+++||++++|..+ +.+.++.+.+ +++.+|.|++||||++|.+.++.+++.+.++++.+.
T Consensus 235 ~TYFg~~~~~l~~l~~lpv~~l~lDlv~-~~~~l~~~~~~~~p~~k~L~~GvVDGRNiW~~dl~~~~~~l~~l~~~ 309 (310)
T PF08267_consen 235 ATYFGDLGDNLELLLDLPVDGLHLDLVR-GPENLEALLKYGFPADKVLSAGVVDGRNIWRTDLEAALALLEKLREK 309 (310)
T ss_dssp E--SS--CCHHHHHTTSSESEEEEETTT-HCHHHHHHHHHTTTTTSEEEEEEE-SSS-B---HHHHHHHHHHHHHC
T ss_pred ECCCCchhhHHHHHhcCCCcEEEeeccC-CcccHHHHHhcCCCCCCEEEEEEECCccccccCHHHHHHHHHHHHhc
Confidence 8888888889999999999999999877 4555666554 345689999999999999999999999999998765
No 6
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=5.3e-68 Score=565.81 Aligned_cols=352 Identities=41% Similarity=0.710 Sum_probs=304.7
Q ss_pred ccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCCCccCC
Q 016581 6 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRFNWN 85 (387)
Q Consensus 6 vG~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~r~~~~ 85 (387)
+||||+|++||||+|+|+||+|+++.++|+++.+++++++|+.|+++|||+||||||+|||+|+|++.+||.||+||+..
T Consensus 1 ~g~PRig~~reLK~a~e~yw~gki~~~~L~~~~~~~~~~~~~~Q~~aGld~ItdGdfs~yD~vLd~~~~~g~ip~r~~~~ 80 (750)
T TIGR01371 1 LGFPRIGPKRELKKALESYWAGKITKEELLKVAKDLRKKNWKLQKEAGVDFIPSNDFSLYDHVLDTAVMLGAIPERFGNY 80 (750)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcCCcchHHHHHHHHHHhccchHhhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred CCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhCCCCCCceeecHHHHHHhc
Q 016581 86 GGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLS 165 (387)
Q Consensus 86 ~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~g~~~k~~l~GP~tl~~~~ 165 (387)
.+..+++.||+++||..++++++|||||||||||++|++.+++.|++..+.+++++++|+++|.++||+|+||+||+.++
T Consensus 81 ~~~~~~~~yFa~arG~~~~~~~emtKwFdtNYhY~VPe~~~~~~~~l~~~~~~~e~~~A~~~g~~~Kpvl~GP~T~l~ls 160 (750)
T TIGR01371 81 GGDLDLDTYFAMARGNKDVPALEMTKWFNTNYHYIVPELSPTTEFKLTSNKPLEEYLEAKELGIETKPVLLGPITFLKLS 160 (750)
T ss_pred ccccchhhhHHHhhCCCCcccceeEEEECCCCeeECCEECCCcceecCcchHHHHHHHHHhcCCCCeEEEECHHHHHHHh
Confidence 22246789999999976778899999999999999999999999988888999999999999989999999999999999
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecC
Q 016581 166 KPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCY 245 (387)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~ 245 (387)
+...+| .++.+++++|+++|++++++|.++||.|||||||+|+.++..++.+.+.++++.+..+++. ..+.+|+|+
T Consensus 161 k~~~~y---~~~~~ll~~L~~~y~~~l~~L~~~G~~~IQiDEP~L~~d~~~~~~~~~~~ay~~l~~~~~~-~ki~l~tyF 236 (750)
T TIGR01371 161 KAVEEP---FEPLSLLEKLLPVYKEVLKKLAEAGATWVQIDEPALVTDLSKEDLAAFKEAYTELSEALSG-LKLLLQTYF 236 (750)
T ss_pred CccCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhcCCCCHHHHHHHHHHHHHHHhccCC-ceEEEECCC
Confidence 732233 2789999999999999999999999999999999999988777777889999998888753 588999999
Q ss_pred CCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEc
Q 016581 246 SNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVN 325 (387)
Q Consensus 246 gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~is 325 (387)
|++.++++.+.+++||+|++|..+.+ +.|+.+..+++.+|.|++||||++|.++++++++.++|+++.+.. +++||+
T Consensus 237 g~~~~~~~~l~~lpvd~l~lD~v~~~-~~L~~~~~~~~~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~~--~~l~v~ 313 (750)
T TIGR01371 237 DSVGDALEALVSLPVKGIGLDFVHGK-GTLELVKAGFPEDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAHV--GKLVVS 313 (750)
T ss_pred CchHHHHHHHHcCCCCEEEEEeccCc-ccHHHHHhcCCCCCeEEEEEEeccccccCCHHHHHHHHHHHHhhC--CCEEEe
Confidence 99999999999999999999977643 344443322344789999999999999999999999999999965 569999
Q ss_pred CCCCCCCCChhhH-----HHHHHHHHHHHHHHHHHhCCCcc-ccC
Q 016581 326 PDCGLKTRKYTEV-----KPALSNMVAATKLLRTQLTVPRR-LEG 364 (387)
Q Consensus 326 PdCGl~~~~~~~a-----~~kL~~lv~~a~~~r~~l~~~~~-~~~ 364 (387)
|||||.+.|.+.. ..-++..-..|++--+|+..+.+ |++
T Consensus 314 psCsLlhvP~~~~~e~~l~~~~~~~~~fa~~k~~e~~~l~~~~~~ 358 (750)
T TIGR01371 314 TSCSLLHVPVDLELETKLDPELKSWLAFAKEKLEELKALKRALNG 358 (750)
T ss_pred CCCCcccCCccCcccccCCHHHHhhhhhHHHHHHHHHHHHHHHhC
Confidence 9999998765422 23355555555555555555555 554
No 7
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=3.1e-66 Score=508.54 Aligned_cols=315 Identities=20% Similarity=0.232 Sum_probs=279.9
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
++||+|| |||| ++|++++++|.+|+++.++|+++++++++++|+.|+++|||+||||||+|.||+.+|++.++|+.
T Consensus 3 l~tt~VGS~prp---~~l~~~~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~ 79 (339)
T PRK09121 3 LPTSTAGSLPKP---SWLAEPETLWSPWKLQGEELIEGKQDALRLSLQEQEDAGIDIVSDGEQTRQHFVTTFIEHLSGVD 79 (339)
T ss_pred CCCceecCCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceeCCccccchHHHHHHHhCCCce
Confidence 6899999 9999 99999999999999999999999999999999999999999999999999999999999998882
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC-CCCCCceeecH
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH-GVETVPVLIGP 158 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~-g~~~k~~l~GP 158 (387)
.. + .+..+++ +++.|..|.++|++.+ ..++.+++|+++++. +.+.|.+||||
T Consensus 80 -~~-----------------~------~~~~~~~-~~~~~~~p~v~G~i~~--~~~~~~~~~~~~~~~~~~~vK~~ipgP 132 (339)
T PRK09121 80 -FE-----------------K------RETVRIR-DRYDASVPTVVGAVSR--QKPVFVEDAKFLRQQTTQPIKWALPGP 132 (339)
T ss_pred -ee-----------------c------CCcceec-ccccCCCCEEEEecCC--CCCCcHHHHHHHHhccCCCceEEeCcH
Confidence 10 0 0112345 7778999999999875 347788999999987 55689999999
Q ss_pred HHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCce
Q 016581 159 VSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQ 238 (387)
Q Consensus 159 ~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~ 238 (387)
+|++.++.+ +.|. +.+++++|||.+|++++++|+++||++||||||.|+. ++++..+.+++++|.++++++ ..
T Consensus 133 ~tl~~~~~~-~~Y~---~~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~-~~~~~~~~~v~~~n~~~~g~~--~~ 205 (339)
T PRK09121 133 MTMIDTLYD-DHYK---SREKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNV-FFDEVNDWGVAALERAIEGLK--CE 205 (339)
T ss_pred HHHHHHhcc-ccCC---CHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhh-hhHHHHHHHHHHHHHHHcCCC--Cc
Confidence 999977764 3443 7899999999999999999999999999999999997 445446689999999999997 46
Q ss_pred EEEEecCCCc------------------hhHHHHHHcCCCCEEEEecC--CCChhhhHHhhhccCCCcccccccccCCCC
Q 016581 239 IHTHMCYSNF------------------NDIIHSIIDMDADVITIENS--RSNENLLSVFREGVQYDAAIGPGVYDIHSP 298 (387)
Q Consensus 239 v~lH~C~gn~------------------~~i~~~l~~l~vD~i~lE~~--r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~ 298 (387)
+++|+||||+ ..+++.|.++++|++++|.+ ++++++|+.++ ++.|++||||++++
T Consensus 206 v~~HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~l~~~~-----~~~v~lGvvd~k~~ 280 (339)
T PRK09121 206 TAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSNIDIISLECHNSRVPMDLLELIR-----GKKVMVGAIDVASD 280 (339)
T ss_pred eEEEEeCCCCCCCccccccccccccccHHHHHHHHHhCCCCEEEEEecCCCCCcHHHHhcc-----cCeEEeeeEeCCCC
Confidence 8899999976 38899999999999999954 44588888874 47899999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016581 299 RIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLT 357 (387)
Q Consensus 299 ~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~l~ 357 (387)
.+|++|+|++||+++++++|++++++||||||++++++++++||++|+++++++|++|+
T Consensus 281 ~lE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~~l~~~~a~~KL~~l~~~a~~~~~~~~ 339 (339)
T PRK09121 281 TIETPEEVADTLRKALQFVDADKLYPCTNCGMAPLSRDVARGKLNALSAGAEIVRRELA 339 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHEEECCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 8
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=1.4e-65 Score=502.26 Aligned_cols=311 Identities=15% Similarity=0.256 Sum_probs=269.9
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
++||+|| |||| ++|++|+++||+|+++.++|+++.++++.++|+.|+++|||+|||||||| |+|+|.
T Consensus 3 ~~tt~VGS~Prp---~~Lk~a~e~~~~g~i~~~~l~~~~~~a~~~~v~~Q~~aGlD~itdGe~r~-d~~~~~-------- 70 (326)
T PRK08575 3 IKKALVGSYPRP---VKLAKVISWYNSGKISKEKLEKAINENTKRFFELAKDVGIDYTTDGLFRW-DDIFDP-------- 70 (326)
T ss_pred ceeeeeCCCCCC---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeCCCCcch-HHHHHH--------
Confidence 4699999 9999 99999999999999999999999999999999999999999999999988 665543
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC----C--CCCCc
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH----G--VETVP 153 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~----g--~~~k~ 153 (387)
+|.+++| +.+.+|+|||+|||||++|++++++.++ ..++++++|+++++. + ..+|+
T Consensus 71 --------------f~~~~~G---~~~~~~~k~f~~ny~y~~P~v~g~i~~~-~~~~~~~~~~~ak~~~~~~~~~~~~K~ 132 (326)
T PRK08575 71 --------------TISFISG---VEKGGLQRFYDNNFYYRQPVIKEKINLK-EENPYLQWLESAREIKEEVSLESKLKA 132 (326)
T ss_pred --------------HHHHcCC---cccCceeEecCCCceeeCeEEEeeecCC-CCCccHHHHHHHHHhHhccCCCCCccE
Confidence 3333455 2346799999999999999999976553 135789999999987 3 26899
Q ss_pred eeecHHHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcC
Q 016581 154 VLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCG 232 (387)
Q Consensus 154 ~l~GP~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~ 232 (387)
+||||+||+.++++ +.|. +.++++.++|++|++++++|++ ||++||||||+| +.++..+..+.++++++.+.++
T Consensus 133 vl~GP~T~~~~s~~-~~Y~---~~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~~~~~~~~~~a~~~~~~~ 207 (326)
T PRK08575 133 VLPGPLTYAVLSDN-EYYK---NLIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIKRDTLEKLPEVYKTMAKN 207 (326)
T ss_pred EEecHHHHHHHhcc-ccCC---CHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999988874 3442 6899999999999999999999 999999999999 8887776777899999999999
Q ss_pred CCCCceEEEEecCCCc-hhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHH
Q 016581 233 IQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIY 311 (387)
Q Consensus 233 ~~~~~~v~lH~C~gn~-~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~ 311 (387)
+ +.++++|+|||.- ..+++.|.+++||++++|.++.+ +.|..+.+.++ ++.|++||||++|+.+||+|+|+++|+
T Consensus 208 ~--~~~i~l~tyfg~~~~~~~~~l~~~~vd~l~ld~~~~~-~~l~~~~~~~~-~k~l~~GviD~rn~~vE~~eev~~~i~ 283 (326)
T PRK08575 208 V--NIEKHLMTYFEINNLKRLDILFSLPVTYFGIDVIENL-KKLGRVYTYLK-GRKVYLGILNARNTKMEKISTIRRIVN 283 (326)
T ss_pred C--CCCEEEECCCCCccccHHHHHhcCCCcEEEEEecCCh-hHHHHHHhhCC-CCEEEEEEEeCCCCCCCCHHHHHHHHH
Confidence 8 4578999999941 25899999999999999977653 44555555222 678999999999999999999999999
Q ss_pred HHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 016581 312 EMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLL 352 (387)
Q Consensus 312 ~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~ 352 (387)
++++ +|++++||+|||||.++|+++|++||++|+++ +.+
T Consensus 284 ~~~~-~~~~~l~v~pdcgl~~lp~~~a~~KL~~l~~~-~~~ 322 (326)
T PRK08575 284 KVKR-KGVSDIIVGNNTLFDFIPEVVAVKKLKLLGKL-EKL 322 (326)
T ss_pred HHHh-cCCCeEEEeCCCCcccCcHHHHHHHHHHHHHH-Hhh
Confidence 9999 99999999999999999999999999999999 544
No 9
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-63 Score=484.63 Aligned_cols=320 Identities=35% Similarity=0.481 Sum_probs=289.3
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
++||++| |||| .+|++|+++|.+|+++.+++++.++++++++++.|+++|||++|||||+|+|||.+|++.++|+.
T Consensus 5 ~~tt~iGSfPr~---~~l~~a~~~~~~G~i~~ee~~~~~~~~i~~~i~~q~~~Gldv~v~Ge~~r~Dmv~~F~e~l~G~~ 81 (330)
T COG0620 5 LPTTVIGSFPRP---EELRKAREKWKKGEISEEEYEEILREAIRRAIKDQEEAGLDVLVDGEFERNDMVEYFAEKLDGVK 81 (330)
T ss_pred CcccccCCCCCC---hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEecCCceeecHHHHHHHHHcCCee
Confidence 4799999 9999 99999999999999999999999999999999999999999999999999999999999888772
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC-CCCCCceeecH
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH-GVETVPVLIGP 158 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~-g~~~k~~l~GP 158 (387)
+ +..++.++|++ ..|+.|++.|++.+. .++.++++.++++. ..+.|.+||||
T Consensus 82 --~----------------------~~~~~v~~~~~-~~~r~p~i~g~v~~~--~~~~v~~~~~a~~~~~~~~K~~ltGP 134 (330)
T COG0620 82 --F----------------------TQNGWVRSYGS-RCYRPPIIIGDVSRP--EPMTVEEFLYAQSLTEKPVKGMLTGP 134 (330)
T ss_pred --e----------------------ccCCcEEEecc-EEeeCceEecccccC--CCCcchhhhhhhhccCccceeeeccH
Confidence 1 22355666676 789999999998764 57899999999986 45678889999
Q ss_pred HHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCCh----HHHHHHHHHHHHHHcCCC
Q 016581 159 VSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDS----HKLQAFIHSFRITNCGIQ 234 (387)
Q Consensus 159 ~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~----~~~~~a~~~~~~~~~~~~ 234 (387)
+|++.++..+ +| . +.+++++++|.+|++++++|.++||.+||||||+|...++. +..+++++++|.++++++
T Consensus 135 ~ti~~~s~~~-~~-~--~~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 210 (330)
T COG0620 135 VTILLWSFNR-YY-I--SREELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLRRDDDYLEWAVEAINLAAAGVG 210 (330)
T ss_pred HhhHhhhccc-cC-C--CHHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCccccchHHHHHHHHHHHHHHhcCC
Confidence 9999998753 33 2 78999999999999999999999999999999999886532 245789999999999999
Q ss_pred CCceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHH
Q 016581 235 DTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMR 314 (387)
Q Consensus 235 ~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~ 314 (387)
.+++||+|+|||+|..+++.+.++++|++++|.++++.+.++.+.+ ..+++.|++||+|+|++.+|++++|+++|++++
T Consensus 211 ~d~~i~~HiCy~e~~~~~~~i~~ld~dv~~~e~~~s~~~~~~~~~~-~~~~~~Ig~Gv~d~~~~~ve~~eei~~~i~k~~ 289 (330)
T COG0620 211 ADTQIHLHICYSEFNDIPDAIEALDADVIDIETSRSRMELLEVLEE-VKYDKEIGLGVVDIHSPKVESVEEIAARIRKAL 289 (330)
T ss_pred CCcEEEEEEECCcccchhHHHhhcCCcEEeeeccccccchhHHHHh-ccCCCeeecceEecCCCCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877777777776 446789999999999999999999999999999
Q ss_pred hhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 016581 315 TVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQ 355 (387)
Q Consensus 315 ~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~ 355 (387)
+.+|++++||||||||+++++++|++||++|+++++.+|++
T Consensus 290 ~~~~~e~~~vnPDCGl~~~~~~~a~~kL~nmv~a~~~~r~e 330 (330)
T COG0620 290 ERVPPERLYVNPDCGLKTLPREIAEAKLENMVKAAKEIREE 330 (330)
T ss_pred HhCChheEEEcCCCCcccCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999975
No 10
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=2.6e-62 Score=485.75 Aligned_cols=319 Identities=14% Similarity=0.239 Sum_probs=270.8
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
++||+|| |||| ++|++|+++|.+|+++.++|+++++++++++|+.|+++|||+||||||+|.+|++||++.++|+
T Consensus 8 ~~tt~VGS~prP---~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldvitDGE~rR~~w~~df~~~l~Gv- 83 (368)
T PRK06520 8 FRADVVGSFLRP---AAIKQARQQFAAGEIDAAALRKIEDMEIRKVVEKQRACGLKVVTDGEFRRAWWHFDFFDGLQGV- 83 (368)
T ss_pred CCcceeccCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCccccceeeehhhhcCCe-
Confidence 4699999 9999 9999999999999999999999999999999999999999999999999987878999999987
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC--CCCCCceeec
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH--GVETVPVLIG 157 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~--g~~~k~~l~G 157 (387)
+++....| + .+.+++..|..|.++|++.++ ..++++++|+++++. +.+.|.++||
T Consensus 84 ~~~~~~~g---------------------~-~f~~~~~~~~~~~v~G~I~~~-~~~~~~~~~~~l~~~~~~~~~K~~ipg 140 (368)
T PRK06520 84 ERYEAEQG---------------------I-QFNGVQTKARGVRVTGKLDFP-DDHPMLEDFRFLKSISGDATPKMTIPS 140 (368)
T ss_pred eeecccCc---------------------e-eecCcccccCCeEEEEEecCC-CCCchHHHHHHHHhhccCCCCCEEcCc
Confidence 23221111 1 112334457789999998764 247889999999987 3457999999
Q ss_pred HHHHHHhcC----CCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChH--------------HH
Q 016581 158 PVSYLLLSK----PAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSH--------------KL 219 (387)
Q Consensus 158 P~tl~~~~~----~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~--------------~~ 219 (387)
|+|++.+.. ....|. +.++++.|||.+|++++++|+++||++||||||.|++.+.+. ..
T Consensus 141 P~~l~~~~~~~~~~~~~Y~---~~~~~~~dlA~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~ 217 (368)
T PRK06520 141 PSVLHFRGGRKAIDATVYP---DLDDYFDDLAKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELA 217 (368)
T ss_pred HHHHHhhccccccchhcCC---CHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHH
Confidence 999985421 112332 789999999999999999999999999999999998743311 13
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEecCCCch----------hHHHHHH-cCCCCEEEEecC--CC-ChhhhHHhhhccCCC
Q 016581 220 QAFIHSFRITNCGIQDTTQIHTHMCYSNFN----------DIIHSII-DMDADVITIENS--RS-NENLLSVFREGVQYD 285 (387)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~----------~i~~~l~-~l~vD~i~lE~~--r~-~~e~L~~~~~~~~~~ 285 (387)
+.+++++|.+++++|.++.|++|+|||||+ .+++.|. ++++|++++|.+ |+ ++++|+.+++ .+
T Consensus 218 ~~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~~~~~~y~~i~~~L~~~~~vd~~~lE~~~~r~g~~e~L~~l~~---~~ 294 (368)
T PRK06520 218 RIYARVLNKALAGKPADLTIGLHVCRGNFRSTWISEGGYEPVAETLFGGVNVDAFFLEYDNERAGGFEPLRFIPP---GH 294 (368)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCCCCccccccchhHHHHHHHhhcCCCeEEEEeccCCCCCcchHHHhhh---cC
Confidence 567899999999999999999999999976 8999974 899999999943 44 4788988865 25
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC------CCChhhHHHHHHHHHHHHHHH
Q 016581 286 AAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLK------TRKYTEVKPALSNMVAATKLL 352 (387)
Q Consensus 286 k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~------~~~~~~a~~kL~~lv~~a~~~ 352 (387)
+.|++||||++++.+|++|+|++||+++++++|++||++||||||+ .++++++++||++|+++|+.+
T Consensus 295 k~v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~s~~~~~~l~~~~~~~KL~~l~~~a~~~ 367 (368)
T PRK06520 295 QQVVLGLITTKNGELENADDVKARLAEAAKFVPLEQLCLSPQCGFASTEEGNSLSEEQQWAKLRLVVEIANEV 367 (368)
T ss_pred CEEEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEeeCcccCCCccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999 579999999999999999986
No 11
>PRK06233 hypothetical protein; Provisional
Probab=100.00 E-value=8.1e-62 Score=483.10 Aligned_cols=324 Identities=19% Similarity=0.246 Sum_probs=269.7
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
++++||| |||| ++|++|+++|.+|+++.++|+++++++++++|+.|+++|||+||||||+|.||+.||+++++|+.
T Consensus 9 ~~~~~VGS~prP---~~L~~a~~~~~~g~i~~~~l~~~~~~ai~~~V~~Q~~aGldiitDGE~rR~~~~~~f~~~l~G~~ 85 (372)
T PRK06233 9 FRFDIVGSFLRP---ERLKEAREQFAIGEISQDQLLKIQHAEIKRLVKEQVELGLKAVTDGEFNRSWWHLDFLWGLNGVG 85 (372)
T ss_pred cccceEeeCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCcCCccHHHHHHhhcCceE
Confidence 3689999 9999 99999999999999999999999999999999999999999999999999999999999999982
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC---CCCCCceee
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH---GVETVPVLI 156 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~---g~~~k~~l~ 156 (387)
.+.+. ..+ .++ ..+-.+..|.++|++.++ ..++++++|+++++. +...|.++|
T Consensus 86 -~~~~~-------~~~-------~~~--------~~~~~~~~~~v~g~i~~~-~~~p~~~~~~~~~~~~~~~~~~K~tip 141 (372)
T PRK06233 86 -KYEYE-------DSY-------KFH--------GAKTRTDNAELAGKVAFN-PDHPFFAAFKYLKSIVPEGVLPKQTIP 141 (372)
T ss_pred -eecCc-------cee-------eec--------CCcCCCCCCEEEEeeccC-CCCchHHHHHHHHhhhcCCCceEEEec
Confidence 11110 000 000 001125579999998764 247789999999987 345699999
Q ss_pred cHHHHHHhcCCCCCccCCC-CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCCh---------------HHHH
Q 016581 157 GPVSYLLLSKPAWGVEKTF-SVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDS---------------HKLQ 220 (387)
Q Consensus 157 GP~tl~~~~~~~~~~~~~~-~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~---------------~~~~ 220 (387)
||+|++.+.... .+...| +.++++.|||.+|++++++|+++||++||||||+|+..+.. ++.+
T Consensus 142 gP~~l~~~~~~~-~~~~~Y~~~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
T PRK06233 142 SPSLLFRDNRSD-NWPKFYDSWDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAE 220 (372)
T ss_pred CcHHhccCcccc-cccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHH
Confidence 999998532211 111123 78999999999999999999999999999999998763210 1124
Q ss_pred HHHHHHHHHHcCCCCCceEEEEecCCCch----------hHHHHHHcCCCCEEEEecC--CC-ChhhhHHhhhccCCCcc
Q 016581 221 AFIHSFRITNCGIQDTTQIHTHMCYSNFN----------DIIHSIIDMDADVITIENS--RS-NENLLSVFREGVQYDAA 287 (387)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~v~lH~C~gn~~----------~i~~~l~~l~vD~i~lE~~--r~-~~e~L~~~~~~~~~~k~ 287 (387)
.+++++|.+++++|.++.|++|+|+|||+ .+++.|.++++|++++|.+ |+ ++++|+.+.. .+.++.
T Consensus 221 ~~~~~~N~~~~~~p~d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~~L~~~~~-~~~~k~ 299 (372)
T PRK06233 221 DAVYVINKALADLPEDLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQLNYDGFFLEYDNDRSGSFEPLKQIWN-NRDNVR 299 (372)
T ss_pred HHHHHHHHHHhCCCcCCEEEEEeeCCCCCCcccccCcHHHHHHHHHhCCCCEEEEecCCCccCccchHHHhhc-cCCCCE
Confidence 57779999999999999999999999997 8999999999999999953 43 5788887754 333678
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 016581 288 IGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLK------TRKYTEVKPALSNMVAATKLLR 353 (387)
Q Consensus 288 l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~------~~~~~~a~~kL~~lv~~a~~~r 353 (387)
|++||||++++.+|++|+|++||+++++++|++||++||||||+ .++++++++||++|+++|+.+.
T Consensus 300 v~lGvid~~~~~vE~~e~I~~rI~~a~~~v~~e~l~lspdCGf~s~~~g~~l~~~~~~~KL~~l~~~a~~~w 371 (372)
T PRK06233 300 IVLGLITSKFPELEDEDEIIARIDEATEYVPLSNLALSTQCGFASTEEGNILTEADQWAKLALVKKIADKVW 371 (372)
T ss_pred EEeeeecCCCCCCCCHHHHHHHHHHHHHhCCHHHEEecCCCCCccccccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999 7899999999999999999874
No 12
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=100.00 E-value=1.7e-61 Score=515.81 Aligned_cols=321 Identities=37% Similarity=0.533 Sum_probs=280.2
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
++||+|| |||| .+|++|+++||+|++|.++|+++++++++++|+.|+++|||+||||||+|||||.+|.+.++|+
T Consensus 422 ~~tt~vGSfPr~---~~lk~are~~~~G~is~eel~~~~~~~i~~~i~~Qe~aGLDvi~~GEf~r~D~v~~F~e~L~G~- 497 (750)
T TIGR01371 422 LPTTTIGSFPQT---PEVRKARAAYRKGEISEEEYEKFIKEEIKKVIKIQEELGLDVLVHGEFERNDMVEYFGEKLAGF- 497 (750)
T ss_pred CcCcccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCeeeecHHHHHhhcCCcE-
Confidence 4799999 9999 7899999999999999999999999999999999999999999999999999998887655443
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhCC-CCCCceeecH
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHG-VETVPVLIGP 158 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~g-~~~k~~l~GP 158 (387)
|.+++| +.+.|++ .++.+|+|.|++.. ..+..++++++|++++ .++|++||||
T Consensus 498 ---------------~~~~~G--------~v~~~g~-~~v~~P~i~g~v~~--~~~~~v~~~~~aq~lt~~~vK~~LtGP 551 (750)
T TIGR01371 498 ---------------AFTQNG--------WVQSYGS-RCVRPPIIYGDVSR--PKPMTVKWSVYAQSLTSKPVKGMLTGP 551 (750)
T ss_pred ---------------EEecCc--------ceeecCC-cCCCCCEEeCCCCC--CCCCchHHHHHHHhccCCCCceEEech
Confidence 323333 2222333 24689999998754 2455589999999995 7889999999
Q ss_pred HHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCC---hH---HHHHHHHHHHHHHcC
Q 016581 159 VSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLD---SH---KLQAFIHSFRITNCG 232 (387)
Q Consensus 159 ~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~---~~---~~~~a~~~~~~~~~~ 232 (387)
+|++.+++... + .++++++++|+.+|++++++|.++||++||||||+|..+++ .+ ..+++++++|.++++
T Consensus 552 vT~l~~s~~r~-d---~~~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~~~~~~~~~l~~a~~~~~~~~~~ 627 (750)
T TIGR01371 552 VTILNWSFVRD-D---IPRKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPLRKSDWPEYLDWAVEAFRLATSG 627 (750)
T ss_pred HHHHhhhhhcc-C---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCccchhHHHHHHHHHHHHHHHHhC
Confidence 99998886422 1 27899999999999999999999999999999999998776 22 245899999999999
Q ss_pred CCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHH
Q 016581 233 IQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYE 312 (387)
Q Consensus 233 ~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~ 312 (387)
++.+++|++|+|||||.++++.|.++++|+|+||.+|++++.|+.+++..++++.|++||||+||+++|++|+++++|++
T Consensus 628 v~~~~~I~~H~C~g~~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~~~ig~GVvD~~s~~ve~~eei~~~i~~ 707 (750)
T TIGR01371 628 VKDETQIHTHMCYSEFNEIIESIADLDADVISIEASRSDMELLSAFKNGFGYPNGIGPGVYDIHSPRVPSVEEMADLIEK 707 (750)
T ss_pred CCCCCEEEEEEECCCcHHHHHHHHhCCCCEEEEEecCCChhHHHHhhhhcccCCeEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 99888999999999999999999999999999998888888888886412345679999999999999999999999999
Q ss_pred HHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 016581 313 MRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQ 355 (387)
Q Consensus 313 a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~ 355 (387)
+++++|++++||||||||++++++++.+||++||++++++|++
T Consensus 708 a~~~i~~erl~vsPdCGL~tr~~~~~~~~L~~mv~aa~~~r~~ 750 (750)
T TIGR01371 708 ALQVLPAERLWVNPDCGLKTRNWEEVIASLKNMVEAAKEAREQ 750 (750)
T ss_pred HHHhcCcceEEEeCCCCCCcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999963
No 13
>PRK01207 methionine synthase; Provisional
Probab=100.00 E-value=2.7e-60 Score=461.39 Aligned_cols=312 Identities=21% Similarity=0.299 Sum_probs=266.6
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccc-cCCCcccchhhhhHHHhhCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYI-PSNTFSYYDQVLDTTAMLGAV 78 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~i-tdGef~~~d~vld~~~~~~~v 78 (387)
|+||+|| ||+| ++++++.. +++. .+++.+...++++.+|+.|+++|||+| +|||+.|.|++..|...+.|+
T Consensus 4 l~TT~iGS~P~p---~~~~~~~~---~~~~-~~~~~e~~~~ai~~~v~~Qe~aGlDiv~~dGe~~R~dmv~~f~~~l~G~ 76 (343)
T PRK01207 4 LITQEIGSFRKP---EYLSREFH---KIEG-TDKFYELAERATLETLDVFENAGLDNIGIGGEMFRWEMYEHPAERIKGI 76 (343)
T ss_pred ccccccCCCCCC---HHHHHHHh---ccCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEeeCCcEeechHHHHHHHhcCCe
Confidence 5799999 9999 77777664 4444 677777777899999999999999998 799999999776666655544
Q ss_pred CCCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC-CCCCCceeec
Q 016581 79 PPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH-GVETVPVLIG 157 (387)
Q Consensus 79 ~~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~-g~~~k~~l~G 157 (387)
.+ .++.+.|++ .+|+.|.|.|++..+ .+..++++++|+++ ..+.|.+|||
T Consensus 77 ------------------------~~--~g~vr~y~~-~~~r~Pii~g~i~~~--~~~~v~e~~~a~~~t~kpvK~~ltG 127 (343)
T PRK01207 77 ------------------------IF--YGMVRSFDN-RYYRKGSIIDRMERR--SSFHLDEVEFVADNTKKPIKVPITG 127 (343)
T ss_pred ------------------------Ee--cCeEEEecc-ccccCCeEEeeccCC--CCCcHHHHHHHHHccCCCcEEEecC
Confidence 11 345666776 469999999998653 46789999999998 4567889999
Q ss_pred HHHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHc------CCC-EEEecCcccccCCChHHHHHHHHHHHHHH
Q 016581 158 PVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAA------GAS-WIQFDEPLLVMDLDSHKLQAFIHSFRITN 230 (387)
Q Consensus 158 P~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~a------G~~-~IQiDEP~l~~~l~~~~~~~a~~~~~~~~ 230 (387)
|+|++.++.+ ++|. ++++++.++|.++++|+++|.++ ||. +||||||+|... .+..+++++++|.++
T Consensus 128 P~Ti~~~S~~-~~Y~---~~~el~~~iA~al~~Ev~~L~~a~~~~~~G~~~~IQiDEPal~~~--~~~l~~av~a~n~~~ 201 (343)
T PRK01207 128 PYTMMDWSFN-DFYR---DRYDLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPATTTH--PDEMDIVVDSINKSV 201 (343)
T ss_pred HHHHHHHhcc-cccC---CHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEeCCCcCCC--hHHHHHHHHHHHHHH
Confidence 9999999874 3443 78999999999999999999999 898 799999999863 445568999999999
Q ss_pred cCCCCCceEEEEecCC-CchhHHHHHHcCCCCEEEEecC-------------CCChhhhHHhhhc---cCCCcccccccc
Q 016581 231 CGIQDTTQIHTHMCYS-NFNDIIHSIIDMDADVITIENS-------------RSNENLLSVFREG---VQYDAAIGPGVY 293 (387)
Q Consensus 231 ~~~~~~~~v~lH~C~g-n~~~i~~~l~~l~vD~i~lE~~-------------r~~~e~L~~~~~~---~~~~k~l~lGvv 293 (387)
++++. .+++|+||| +|..+++.|.++++|+++||++ |++++.|+.|.+. +++++.|++||+
T Consensus 202 ~gv~~--~i~~H~C~g~~~~~i~~~i~~~~~d~~~~E~a~~~~~~~~~~~~~r~~~~~l~~~~~~~~~l~~~~~Ig~GV~ 279 (343)
T PRK01207 202 YGIDN--EFSIHVCYSSDYRLLYDRIPELNIDGYNLEYSNRDTLEPGTSDEKRPGFQDLKYFAEHNESLQRKKFIGLGVT 279 (343)
T ss_pred hCCCC--cEEEEEEcCCChHHHHHHHHhCCCCEEEEEeccCcccccccccccccchhHHHHHHhhccccCCCCeEEeeEE
Confidence 99975 699999999 8999999999999999999976 4456778887541 224567999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhc-CCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh
Q 016581 294 DIHSPRIPSTEEIVDRIYEMRTVL-ETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQL 356 (387)
Q Consensus 294 d~~s~~ve~~e~v~~ri~~a~~~v-~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~l 356 (387)
|+||+.+|++|+|++||+++++++ |++++|++|||||++++++++++||++|++||+.+|+||
T Consensus 280 D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~~a~~KL~~mv~aa~~~r~el 343 (343)
T PRK01207 280 DVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSREIGEQKLRNMVAAKNNILKEL 343 (343)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCCCCcCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999 899999999999999999999999999999999999875
No 14
>PRK04326 methionine synthase; Provisional
Probab=100.00 E-value=6.2e-58 Score=449.95 Aligned_cols=316 Identities=26% Similarity=0.384 Sum_probs=278.1
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
++||++| |||| .+|++|+++||+|+++.++|+++.+++++.+++.|+++|+|+||||||+|.|++.+|...+.|+
T Consensus 9 ~~~t~vGS~Prp---~~l~~a~~~~~~g~~~~~~l~~~~~~a~~~~v~~q~~~Gld~itdGe~~r~~~~~~f~~~~~G~- 84 (330)
T PRK04326 9 LPTTVVGSYPKP---KWLREAIRLHKAGKISEEDLHEAFDDAVRLVVKDHERAGVDIPVDGEMRREEMVEYFAERIEGF- 84 (330)
T ss_pred CcCccccCCCCC---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCeEEcHhHHHHHHHhCCce-
Confidence 4799999 9999 8899999999999999999999999999999999999999999999999999876665554333
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC--CCCCCceeec
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH--GVETVPVLIG 157 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~--g~~~k~~l~G 157 (387)
...+.++||++|| |++|++++++.. ..+.++++++++++. +.++|++++|
T Consensus 85 -------------------------~~~~~~~~~~~~~-~~~P~v~g~~~~--~~~~~l~~~~~~~~~~~~~~vk~~l~G 136 (330)
T PRK04326 85 -------------------------KFYGPVRVWGNNY-FRKPSVVGKIEY--KEPMLVDEFEFAKSVTYTRPVKVPITG 136 (330)
T ss_pred -------------------------eccCceecccccc-ccCCeEEEeccC--CCCCcHHHHHHHHhcccCCCceEeccC
Confidence 1123467899987 889999997643 457899999999987 6778999999
Q ss_pred HHHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCc
Q 016581 158 PVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTT 237 (387)
Q Consensus 158 P~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~ 237 (387)
|+|++.++. +..|. +..+++.+++++|++++++|.++||++||||||.++.. +...+.+++++|.+++++ +.
T Consensus 137 P~Tla~~~~-~~~y~---~~~e~~~~l~~~~~~~i~~l~~~G~~~iqidEP~l~~~--~~~~~~~~~~l~~~~~~~--~~ 208 (330)
T PRK04326 137 PYTIAEWSF-NEYYK---DKEELVFDLAKVINEEIKNLVEAGAKYIQIDEPALATH--PEDVEIAVEALNRIVKGI--NA 208 (330)
T ss_pred HHHHHhhcc-cccCC---CHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCchhhcC--HHHHHHHHHHHHHHHhCC--CC
Confidence 999997664 23332 67899999999999999999999999999999999873 333478999999999998 45
Q ss_pred eEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 016581 238 QIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVL 317 (387)
Q Consensus 238 ~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v 317 (387)
.+++|+|+||+.++++.|.++++|++++|....+.+.|+.+++ ...++.+++|+||++++++|++|+|+++++++++.+
T Consensus 209 ~v~lH~C~G~~~~~~~~l~~~~vd~i~~d~~~~~~~~l~~~~~-~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~~ 287 (330)
T PRK04326 209 KLGLHVCYGDYSRIAPYILEFPVDQFDLEFANGNYKLLDLLKE-YGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEYV 287 (330)
T ss_pred EEEEEEeCCCcHHHHHHHHhCCCCEEEEEeCCCCchhHHHhhc-cCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHhC
Confidence 7899999999999999999999999999976555677887876 334789999999999999999999999999999999
Q ss_pred CCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016581 318 ETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLT 357 (387)
Q Consensus 318 ~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~l~ 357 (387)
++++++|+|+|||+++|++++++||++|+++++.+|++|+
T Consensus 288 ~~~~~~lsp~Cgl~~~~~~~a~~kl~~l~~~a~~~~~~~~ 327 (330)
T PRK04326 288 PPEKLYINPDCGLKLLPREIAYQKLVNMVKATREVREELD 327 (330)
T ss_pred ChhhEEECCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999986
No 15
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=100.00 E-value=2.2e-57 Score=444.97 Aligned_cols=314 Identities=25% Similarity=0.363 Sum_probs=242.6
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
|+||+|| |||| ++|++|+++|.+|+++.++|+++++++++++|+.|+++|||+||||||+|.||+.||++.+.|+
T Consensus 1 ~~TT~VGS~prp---~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~V~~Q~~~GldvitDGE~~R~~~~~~f~~~l~G~- 76 (324)
T PF01717_consen 1 FPTTVVGSFPRP---EELKEAREAFAKGEISPEELEEIEDEAIADAVKRQEDAGLDVITDGEFRRGDFHSYFAERLDGF- 76 (324)
T ss_dssp S-BB-SSB---S---HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHT-SCBE-BTTT-SSTTHHHHTTSEEE-
T ss_pred CCCcccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceecceeccCchhhhhhhhccCc-
Confidence 6899999 9999 9999999999999999999999999999999999999999999999999999999999887766
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC-CCCCCceeecH
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH-GVETVPVLIGP 158 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~-g~~~k~~l~GP 158 (387)
.... .+ .+ ..|.+ ..+..|.+.+++.. .++..++++.+++.. ..++|.++|||
T Consensus 77 ~~~~---------------~~-------~~-~~~~~-~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~vK~~i~gP 130 (324)
T PF01717_consen 77 GDTL---------------NG-------DV-QSFGE-RYYRPPIVVGKISR--KKPFAVEEFKYAQSLTDKPVKGTITGP 130 (324)
T ss_dssp EEES---------------SE-------EE-EEETT-EEEEEEEEEEEEEE--SS-SSHHHHHHHHHT-SSSBEEEEE-H
T ss_pred eeec---------------cc-------cc-eeccc-ccccceEEeccccc--CCcchhHHHHHHHhccccccccccCHH
Confidence 1100 00 11 11222 23567888887643 356778888888877 34479999999
Q ss_pred HHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHH--------HHHHHHHHHHHH
Q 016581 159 VSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHK--------LQAFIHSFRITN 230 (387)
Q Consensus 159 ~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~--------~~~a~~~~~~~~ 230 (387)
+|++..+... .|. +.++++.+++++|++++++|+++||++||||||.+...+.... .....+.+|.++
T Consensus 131 ~tl~~~~~~~-~y~---~~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (324)
T PF01717_consen 131 STLADPSANR-YYK---DREELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDASFDRDEYLDEAVAAEALNRAV 206 (324)
T ss_dssp HHHHHTSEES-SSS----HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhchhccc-cCC---CHHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhhcccHHHHHHHHHHHHHHHhcc
Confidence 9998766532 332 7899999999999999999999999999999999877554322 113455666666
Q ss_pred cCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHH
Q 016581 231 CGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRI 310 (387)
Q Consensus 231 ~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri 310 (387)
++. ++.+++|+|+||+...++.|.++++|++++|.+..+...++.+++ ++.++.|++||||++++.+|++|+|++||
T Consensus 207 ~~~--~~~v~~H~C~~~~~~~~~~l~~~~vd~~~lE~~~~~~~~l~~l~~-~~~~k~v~lGvv~~~~~~vE~~e~v~~ri 283 (324)
T PF01717_consen 207 KGE--DATVGVHVCRGNYPSILPLLADLNVDAFFLEFADRRAGDLEPLRE-LPSGKKVVLGVVDTKSPEVESPEEVADRI 283 (324)
T ss_dssp STT--TSEEEEEESSSCHCTTHHHHHCSS-SEEEEEETSSTTGGGHHCHC-TTTTSEEEEEES-TTSSS--THHHHHHHH
T ss_pred CCC--CCEEEEEecCccchhhHHHHhhcccceEEeecccCCcccHHHHHh-CcCCceEEEEEEcCCCCCcCCHHHHHHHH
Confidence 664 678999999999998889999999999999965544444555554 45589999999999999999999999999
Q ss_pred HHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 016581 311 YEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKL 351 (387)
Q Consensus 311 ~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~ 351 (387)
++++++++++|+++||||||+++++++|++||++||++|++
T Consensus 284 ~~a~~~~~~~~l~~sPdCGfa~~~~~~a~~kL~~~v~aa~~ 324 (324)
T PF01717_consen 284 EEALEYVPLEQLWLSPDCGFASLTREEARAKLRNMVEAARE 324 (324)
T ss_dssp HHHHTTS-GGGEEEEESSTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCccccEEEcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999985
No 16
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=100.00 E-value=3.9e-55 Score=430.42 Aligned_cols=309 Identities=31% Similarity=0.408 Sum_probs=253.4
Q ss_pred ceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCC
Q 016581 2 ASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (387)
Q Consensus 2 ~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~ 80 (387)
+||||| |||| ++|++|++++.+|+++.++|+++++++++++|+.|+++|||+||||||+|.||+.+|++.++|+.
T Consensus 1 ~tt~vGS~prp---~~l~~a~~~~~~g~~~~~~l~~~~~~ai~~~v~~Q~~~GldiitDGe~~r~~~~~~f~~~l~G~~- 76 (332)
T cd03311 1 PTTTVGSFPRP---KELREARAKFKKGEISAEELREAEDDAIADAVKDQEEAGLDVVTDGEFRRSDMVEYFLERLDGFE- 76 (332)
T ss_pred CCceecCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcccccHHHHHHHhCCcee-
Confidence 589999 9999 99999999999999999999999999999999999999999999999999999999999998882
Q ss_pred CccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhCC--CCCCceeecH
Q 016581 81 RFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHG--VETVPVLIGP 158 (387)
Q Consensus 81 r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~g--~~~k~~l~GP 158 (387)
.. ++.+++ +|..|..|.+.+++..+ .+.++.+++.+++.. ...|++++||
T Consensus 77 ~~-------------------------~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lk~~l~GP 128 (332)
T cd03311 77 FT-------------------------GWVQSY-GSRYYKPPGIVGDVSRR--PPMTVEEGKIAQSLTHPKPLKGILTGP 128 (332)
T ss_pred ec-------------------------cceeee-ccceeeCCeeecccccC--CCCeEEEEEEeccCCCCccccccCCCC
Confidence 10 112223 34457888887765332 234455555555542 4578899999
Q ss_pred HHHHHhcCCCC--CccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCCh---H-HHHHHHHHHHHHHcC
Q 016581 159 VSYLLLSKPAW--GVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDS---H-KLQAFIHSFRITNCG 232 (387)
Q Consensus 159 ~tl~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~---~-~~~~a~~~~~~~~~~ 232 (387)
+|++..+.... .|. +.++++++++++|++++++|+++||++||||||+|+..+.. + ..+.+..+++ ++.+
T Consensus 129 ~Tla~~~~~~~~~~y~---~~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~-~l~~ 204 (332)
T cd03311 129 VTIPSPSFVRFRGYYP---SREELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANE-ALAD 204 (332)
T ss_pred eeECCchhhcccccCC---CHHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHH-HHHh
Confidence 99987665322 131 78899999999999999999999999999999999886644 2 2333344444 4444
Q ss_pred CCCCceEEEEecCCCc----------hhHHHHHHcCCCCEEEEecCCC---ChhhhHHhhhccCCCcccccccccCCCCC
Q 016581 233 IQDTTQIHTHMCYSNF----------NDIIHSIIDMDADVITIENSRS---NENLLSVFREGVQYDAAIGPGVYDIHSPR 299 (387)
Q Consensus 233 ~~~~~~v~lH~C~gn~----------~~i~~~l~~l~vD~i~lE~~r~---~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ 299 (387)
.+.+..+++|+|+||+ ..+++.|.++++|+|++|.+.. +++.|+.+. .++.+++||||++++.
T Consensus 205 ~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~vd~~~le~~~~~~~~~~~l~~~~----~~k~l~~GvVd~~~~~ 280 (332)
T cd03311 205 RPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDVDVFFLEYDNSRAGGLEPLKELP----YDKKVGLGVVDVKSPE 280 (332)
T ss_pred CCCCCEEEEEEECCCCcccccccCcHHHHHHHHHhCCCCEEEEEEcCCCCcchHHHHhCC----CCCEEEeeeecCCCCC
Confidence 3446789999999999 7899999999999999996543 455655543 3789999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 016581 300 IPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATK 350 (387)
Q Consensus 300 ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~ 350 (387)
+|++|+|++||+++++++++++++|+|||||++++++.++.||++|+++++
T Consensus 281 ~e~~e~v~~ri~~~~~~~~~~~l~lsp~CGl~~~~~~~a~~kl~~~~~~~~ 331 (332)
T cd03311 281 VESPEEVKDRIEEAAKYVPLEQLWVSPDCGFATRERGNALTKLENMVKAAL 331 (332)
T ss_pred CCCHHHHHHHHHHHHhhCCHHHEEECCCCCCCcCCCchhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999986
No 17
>PRK00957 methionine synthase; Provisional
Probab=100.00 E-value=2.3e-50 Score=392.14 Aligned_cols=297 Identities=22% Similarity=0.273 Sum_probs=244.2
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
++||+|| ||+|.| +.+.. ++.-.+.+.+++..+++++++|++|+++|||+||||||| .|++.+|++.+.|+.
T Consensus 2 ~~t~~vgs~p~~~~---~~~~~---~~~~~~~~~~~~~~~~ai~~~v~~q~~~Gld~vtdGe~r-~~~~~~f~~~l~G~~ 74 (305)
T PRK00957 2 MITTVVGSYPVVKG---EPETL---KDKIKGFFGLYDPYKPAIEEAVADQVKAGIDIISDGQVR-GDMVEIFASNMPGFD 74 (305)
T ss_pred CCcceecCCCCCcc---chhHH---HHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCcc-CchHHHHHhcCCCcc
Confidence 5899999 999965 22222 122267799999999999999999999999999999995 667888888776551
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC------CCCCCc
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH------GVETVP 153 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~------g~~~k~ 153 (387)
+ |.+.|++.++ ..++.+++|+++++. +.++|+
T Consensus 75 --------------------~---------------------~~vvg~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~vK~ 112 (305)
T PRK00957 75 --------------------G---------------------KRVIGRVEPP-AKPITLKDLKYAKKVAKKKDPNKGVKG 112 (305)
T ss_pred --------------------C---------------------CeEEEeecCC-CCCCcHHHHHHHHHHHhccCCCCceeE
Confidence 0 2334555432 147789999999876 246799
Q ss_pred eeecHHHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCC
Q 016581 154 VLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGI 233 (387)
Q Consensus 154 ~l~GP~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~ 233 (387)
+++||+|++.++..+..|.+. ...+++.+++++|++++++|+++||++||||||.|+.++.+ .+.+.++++.+.+++
T Consensus 113 ~i~GP~Tla~~~~~~~~y~~~-~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~~--~~~~~~~~~~~~~~i 189 (305)
T PRK00957 113 IITGPSTLAYSLRVEPFYSDN-KDEELIYDLARALRKEAEALEKAGVAMIQIDEPILSTGAYD--LEVAKKAIDIITKGL 189 (305)
T ss_pred EecCHHHHHhhcccccccCCc-cHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCch--HHHHHHHHHHHHHhh
Confidence 999999999877653345321 34899999999999999999999999999999999986543 346788888888887
Q ss_pred CCCceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHH
Q 016581 234 QDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEM 313 (387)
Q Consensus 234 ~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a 313 (387)
++.+++|+| ||+.++++.|.++++|++++|.+++ .+.|+.+++....++.+++||||++++++|++|+|+++|+++
T Consensus 190 --~~~v~lH~C-G~~~~i~~~l~~~~vd~i~ld~~~~-~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~~ 265 (305)
T PRK00957 190 --NVPVAMHVC-GDVSNIIDDLLKFNVDILDHEFASN-KKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEEG 265 (305)
T ss_pred --CCceEEEEC-CCcHHHHHHHHhCCCCEEEEeecCC-CCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHHH
Confidence 457899999 9999999999999999999997653 445666653233467999999999999999999999999999
Q ss_pred HhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 016581 314 RTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLR 353 (387)
Q Consensus 314 ~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r 353 (387)
++++++++++|+|+|||.+++++.+++||++|+++|+.+|
T Consensus 266 ~~~~~~~~l~lsp~CGl~~~~~~~~~~kL~~l~~aa~~~~ 305 (305)
T PRK00957 266 IEILGAENILIDPDCGMRMLPRDVAFEKLKNMVEAAREIR 305 (305)
T ss_pred HHhcCHHHEEECCCcCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999875
No 18
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=100.00 E-value=1e-47 Score=375.82 Aligned_cols=304 Identities=20% Similarity=0.243 Sum_probs=238.0
Q ss_pred ceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCC
Q 016581 2 ASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (387)
Q Consensus 2 ~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~ 80 (387)
.||+|| |||| .++++|++.||+|+++.+++++..++++.++|+.|+++|+|+|||||| |.| ++|.+..+...++
T Consensus 1 ~~t~vGS~P~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~gl~~i~dge~-~~~-~~~~~~~~~~~~~ 75 (321)
T cd03310 1 LATGIGSYPLP---DGVTKEWSILEKGAIEPEWPEEALFTALGSFFELQLEAGVEVPTYGQL-GDD-MIGRFLEVLVDLE 75 (321)
T ss_pred CCCcccCCCCc---hhHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHhhcCCcCCCccc-HHH-HHhhHHHHHHHhh
Confidence 489999 9999 999999999999999999999999999999999999999999999999 655 4444333321111
Q ss_pred CccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHh---CCCCCCceeec
Q 016581 81 RFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKG---HGVETVPVLIG 157 (387)
Q Consensus 81 r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~---~g~~~k~~l~G 157 (387)
| -+|||++||||++|++.+++ +. +...+.++.+++ .+.+.|++++|
T Consensus 76 ~---------------------------~~~~~~~n~~y~~p~~~~~~-~~---~~~~~~~~~~~~~~~~~~~vk~~l~G 124 (321)
T cd03310 76 T---------------------------GTRFFDNNFFYRPPEAKIEA-FL---PLELDYLEEVAEAYKEALKVKVVVTG 124 (321)
T ss_pred c---------------------------ccccccccceeccchhcccc-cc---cccHHHHHHHHHhcCCCCceEEEecC
Confidence 1 17899999999999998876 43 234444554443 34578999999
Q ss_pred HHHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCC--hHHHHHHHHHHHHHHcCCCC
Q 016581 158 PVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLD--SHKLQAFIHSFRITNCGIQD 235 (387)
Q Consensus 158 P~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~--~~~~~~a~~~~~~~~~~~~~ 235 (387)
|+|++.++...+.++ .+.++++++++++|++++++|.++|+++||||||.++.++. ....+.+.++++.+..+.
T Consensus 125 P~Tla~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~l~~~G~~~iqidEP~l~~~~~s~~~~~~~~~~~~~~~~~~~-- 200 (321)
T cd03310 125 PLTLALLAFLPNGEP--DAYEDLAKSLAEFLREQVKELKNRGIVVVQIDEPSLGAVGAGAFEDLEIVDAALEEVSLKS-- 200 (321)
T ss_pred HHhHhHhhccccCCc--hHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccccccccccchHHHHHHHHHHHhhcc--
Confidence 999998876433321 15789999999999999999999999999999999998775 223445666776665422
Q ss_pred CceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCC---hhhhHHhhhccC-CCcccccccccC----CCCCCC--CHHH
Q 016581 236 TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSN---ENLLSVFREGVQ-YDAAIGPGVYDI----HSPRIP--STEE 305 (387)
Q Consensus 236 ~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~---~e~L~~~~~~~~-~~k~l~lGvvd~----~s~~ve--~~e~ 305 (387)
+..+++|+|.+ .+++.|.++++|++++|..+.. .+.+..+.+ .+ .++.+++|++|. +|.+.+ +.++
T Consensus 201 ~~~~~lHic~~---~~~~~l~~~~vd~l~~D~~~~~~~~~~~l~~~~~-~g~~~~~lg~gvid~~~~~~~~~~~~~~~~~ 276 (321)
T cd03310 201 GGDVEVHLCAP---LDYEALLELGVDVIGFDAAALPSKYLEDLKKLLR-IGVRTLILGLVVTDNEAKGRNAWKEIERLEK 276 (321)
T ss_pred CCceEEEECCC---CCHHHHHhCCCCEEEEecccCcccchhHHHHHHh-cCCceEEEEeeecCCcccCCCHHHHHHHHHH
Confidence 23478999954 6789999999999999976643 577877765 33 467899999999 888876 4444
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 016581 306 IVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATK 350 (387)
Q Consensus 306 v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~ 350 (387)
+.++++.....+ .++++|+|||||.++|++.|++||++|+++++
T Consensus 277 ~~~~l~~~~~~~-~~~~~vtpscgL~~~p~~~a~~kl~~l~~~a~ 320 (321)
T cd03310 277 LVRRLEEPGEVL-DEILYLTPDCGLAFLPPQEARRKLALLAEAAR 320 (321)
T ss_pred HHHHhccchhhh-hhceeeCCCccCCCCCHHHHHHHHHHHHHHhh
Confidence 444444332222 48999999999999999999999999999986
No 19
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=100.00 E-value=4.8e-44 Score=342.57 Aligned_cols=292 Identities=18% Similarity=0.262 Sum_probs=223.5
Q ss_pred ceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCC
Q 016581 2 ASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (387)
Q Consensus 2 ~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~ 80 (387)
..+.+| ||+|.+.+. +..+.+..|+++.++|.+ .++++++.|.++|+|++|+|.|+ |++..|+.-.
T Consensus 5 v~~~iGsyP~P~~~~k--~~~~~~~~g~~~~e~l~~----~~~~~~~~q~dAGld~~Tdgqlr--Dm~~~fl~~i----- 71 (344)
T PRK06052 5 IFDDIGSFPLPEGVTR--EWVENAFETREEDEKLFS----VVRSAFQMKIDAGVQVPTYPQFR--DMIEQFLDII----- 71 (344)
T ss_pred EeccCCCCCCCccccH--HHHhhhhcCCCcHHHHHH----HHHHHHHHHHhcCCccccchHHH--HHHHhHHHHH-----
Confidence 478999 999954433 222233368999999998 89999999999999999999998 7654433322
Q ss_pred CccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC-----C--CCCCc
Q 016581 81 RFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH-----G--VETVP 153 (387)
Q Consensus 81 r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~-----g--~~~k~ 153 (387)
+|.... --.|.+-+=..+ -.-++.++.+.+. | ..+|.
T Consensus 72 ------------------~~~~~~-----------~~p~~~~~~~a~-------i~el~~~~~~~~~~~~~~~~~~~VKv 115 (344)
T PRK06052 72 ------------------RDEKCC-----------EEPYVVKEECAK-------ILELEAIEEVAKEYKEETGETLEVRV 115 (344)
T ss_pred ------------------cCCccc-----------CCCeeeehhhhh-------HHHHHHHHHHHHHHHHhhCCCCCeEE
Confidence 221000 001111110000 0112333333221 3 34788
Q ss_pred eeecHHHHHHhcCCCCCccCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCCh-HHHHHHHHHHHHH--
Q 016581 154 VLIGPVSYLLLSKPAWGVEKTFS-VLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDS-HKLQAFIHSFRIT-- 229 (387)
Q Consensus 154 ~l~GP~tl~~~~~~~~~~~~~~~-~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~-~~~~~a~~~~~~~-- 229 (387)
++|||+|++.++++...|. + .++++.++|.+++++++.|.++|+.+||||||+|+.+..- ...+++++++|.+
T Consensus 116 ~iTGP~tL~~~~f~~~~Y~---d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al~~a~~ 192 (344)
T PRK06052 116 CVTGPTELYLQEFGGTIYT---DILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISALTVAST 192 (344)
T ss_pred EecCHHHHHHHHcCCcccc---chHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHHHHHHh
Confidence 9999999999988655553 4 7899999999999999999999999999999999986531 1234799999999
Q ss_pred ---HcCCCCCceEEEEecCCCchhHH-HHHHcCC-CCEEEEecCCCChhhhHHhhhccC---CCcccccccccC--C---
Q 016581 230 ---NCGIQDTTQIHTHMCYSNFNDII-HSIIDMD-ADVITIENSRSNENLLSVFREGVQ---YDAAIGPGVYDI--H--- 296 (387)
Q Consensus 230 ---~~~~~~~~~v~lH~C~gn~~~i~-~~l~~l~-vD~i~lE~~r~~~e~L~~~~~~~~---~~k~l~lGvvd~--~--- 296 (387)
.+|+ ++++|+|+ +++ +.+.+++ +|++++|+++++ +.|+.+.+ .. +++.+++||+|+ +
T Consensus 193 ~a~~~gv--dv~i~lH~------~l~~~~i~~~~~idvi~~E~A~~~-~~L~~l~~-~~~e~~dk~ig~GV~dtd~~~~~ 262 (344)
T PRK06052 193 YARKQGA--DVEIHLHS------PLYYELICETPGINVIGVESAATP-SYLDLIDK-KVLEDTDTFLRVGVARTDIFSLI 262 (344)
T ss_pred hhccCCc--ceEEEEeh------HhhHHHHhcCCCCCEEeeeccCCh-HHHHHHhh-hhhhhcCCceEEeEEEchhhcch
Confidence 7788 78999998 456 8999999 999999987654 55555554 22 478999999999 8
Q ss_pred ---------------------CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCC-ChhhHHHHHHHHHHHHHHHHH
Q 016581 297 ---------------------SPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTR-KYTEVKPALSNMVAATKLLRT 354 (387)
Q Consensus 297 ---------------------s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~-~~~~a~~kL~~lv~~a~~~r~ 354 (387)
++.+||+|+|++||+++++++|++++||+|||||+++ .++.|++||++|++|++.+|+
T Consensus 263 ~~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK~~~e~~~A~~KL~nmv~aa~~~r~ 342 (344)
T PRK06052 263 AILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLGSWPSQELAFRLLENVAKAINEFRA 342 (344)
T ss_pred hhhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCCChhhHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999998 578999999999999999997
Q ss_pred H
Q 016581 355 Q 355 (387)
Q Consensus 355 ~ 355 (387)
+
T Consensus 343 e 343 (344)
T PRK06052 343 E 343 (344)
T ss_pred c
Confidence 5
No 20
>PRK06438 hypothetical protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=309.31 Aligned_cols=281 Identities=12% Similarity=0.174 Sum_probs=230.6
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
+|+.++| |||| .+|++.+++|..|+++.+++++++++++.+++..|+++|||.+|||.++|+|++..++.-.+
T Consensus 2 ~~~~~~G~yPrp---~~l~k~l~~~~~G~i~~e~l~~~~~~~~~~~~~~q~~aGld~~tdG~lrWdDi~~~~~~~~~--- 75 (292)
T PRK06438 2 VKKLVYGIYPRT---EELRLEYNRWERGLIPDSEINEKINEEKYIFYDKVKDIGIDEYTDPLFNWYDIFRPISLSVN--- 75 (292)
T ss_pred cccccCCCCCCC---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhcCCceEecCccchHHhhhhHHHHhc---
Confidence 5789999 9999 99999999999999999999999999999999999999999999999999997543333222
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC--------CCCC
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH--------GVET 151 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~--------g~~~ 151 (387)
| +..++++|+|+||++||.|+|.|++.+ +...++|..+.++ +...
T Consensus 76 --------------------g---ve~ggL~Ry~dNN~fYR~Pvv~g~l~~----~~~~~~~~~~~e~~~~~~~~~~~~l 128 (292)
T PRK06438 76 --------------------G---VSLGPLTRYLETNTFYRIPEISGVKDF----NRELDKFQKIDENPPLPLYHLKKGI 128 (292)
T ss_pred --------------------C---ccccceeEEeccCceeecceecCCCCc----chhhHHHHHHHhcccccccCCCCCc
Confidence 2 344689999999999999999999876 5677888888764 2335
Q ss_pred CceeecHHHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHc
Q 016581 152 VPVLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNC 231 (387)
Q Consensus 152 k~~l~GP~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~ 231 (387)
|++||||+||+.++.+ ++|. +.++|++++|.++++++++|- ++.|++.||++. .-+.. +....+.+
T Consensus 129 kavLPGPyT~a~lS~n-e~Y~---d~~e~~~aia~~l~~e~~al~---v~~v~l~EPsl~-~~~~~------~~~e~~~e 194 (292)
T PRK06438 129 SIFLPSPYSFYKMSKT-LEKI---DYNDFYKKLVNIYSRILDIFS---IKNVVLLDVFYY-KNDNY------SYLSDLAK 194 (292)
T ss_pred eEEecCchhHHHhhcc-cccC---CHHHHHHHHHHHHHHHHHhCC---cceEEEecchhc-CCCch------hhhhhccc
Confidence 8899999999999974 4443 789999999999999999875 899999999998 33321 11112222
Q ss_pred CCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHH
Q 016581 232 GIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIY 311 (387)
Q Consensus 232 ~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~ 311 (387)
+..+++|.-+|.-...++.|. +++|.| + +.+.+..+.+ + .+ .+++||||++|+.+|++++ .+++
T Consensus 195 ----~~~v~l~TYf~~~~~~~~~L~-~~vd~i-v-----~~~~l~~v~e-y-~~-~v~lGivdarnTkmE~~e~-~~~i- 258 (292)
T PRK06438 195 ----KYNVILITSGNVSKLNFNGLG-HKFESI-V-----RDDEVDYIIN-K-CS-YPGIKIFSGDNTKMEDLKA-RKEI- 258 (292)
T ss_pred ----cccEEEEEecCCchhhHHhhc-ccceeE-e-----ccchhhhHHh-h-cC-CceeeeeecCcccccCHHH-hhhc-
Confidence 345667777777557888999 999999 3 2444555665 4 35 7999999999999999999 8888
Q ss_pred HHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHH
Q 016581 312 EMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAT 349 (387)
Q Consensus 312 ~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a 349 (387)
-+.++++++|+|.|.++|+..+++||++|.+++
T Consensus 259 -----~~~~~v~vt~nt~ldfLP~~~a~~Kl~lL~k~~ 291 (292)
T PRK06438 259 -----SGYDNVLLTHSDYMDFLPREIADIKVELLGKAG 291 (292)
T ss_pred -----cCcceEEEcCCchhhhccHHHHHHHHHHHHhhc
Confidence 346999999999999999999999999998764
No 21
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=99.97 E-value=5.5e-31 Score=282.05 Aligned_cols=180 Identities=22% Similarity=0.223 Sum_probs=154.5
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
++||+|| |||| .+|++|+++|++|+|+.++|++.++++++++|+.|+++|||+||||||+|+|||.+|.+.++|+.
T Consensus 428 ~~tt~IGSfPrp---~~l~~ar~~~~~g~i~~~~~~~~~~~~i~~~V~~Qe~~GlDvltdGE~~R~d~v~~F~~~l~Gf~ 504 (758)
T PRK05222 428 LPTTTIGSFPQT---TEIRKARAAFKKGELSEEEYEAFIREEIARAIRLQEELGLDVLVHGEFERNDMVEYFGEQLDGFA 504 (758)
T ss_pred CcccccCCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeecCceeeeehHHHHHHhCCCee
Confidence 4799999 9999 99999999999999999999999999999999999999999999999999999999999988772
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCccc-HHHHHHHHhC-CCCCCceeec
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKA-VTEYKEAKGH-GVETVPVLIG 157 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~-~~~~~~ak~~-g~~~k~~l~G 157 (387)
+ +..+..+.|++. +|+.|.|.|++.+. +++ ++++++|+++ +.++|++|||
T Consensus 505 --~----------------------~~~g~v~~~g~~-~~r~p~i~G~i~~~---~p~~v~~~~~aq~~t~~~vK~~ltG 556 (758)
T PRK05222 505 --F----------------------TQNGWVQSYGSR-CVKPPIIYGDVSRP---EPMTVEWIKYAQSLTDKPVKGMLTG 556 (758)
T ss_pred --e----------------------cCCceeeeeCCc-CCCCCeeeCCCcCC---CCCchHHHHHHHhccCCCCcEEEec
Confidence 1 001223444433 46889999988653 445 8999999998 6778999999
Q ss_pred HHHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCC
Q 016581 158 PVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLD 215 (387)
Q Consensus 158 P~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~ 215 (387)
|+|++.++.... | .++++++.+||.+|++++++|+++||++||||||+|...++
T Consensus 557 P~T~~~~s~~r~-~---~~~~e~~~dlA~al~~Ev~~L~~aG~~~IQiDEPal~e~~~ 610 (758)
T PRK05222 557 PVTILNWSFVRD-D---QPREETARQIALAIRDEVLDLEAAGIKIIQIDEPALREGLP 610 (758)
T ss_pred HHHHHHHHhccc-C---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCchhhhcCc
Confidence 999998886532 2 17899999999999999999999999999999999987664
No 22
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=99.97 E-value=2.1e-30 Score=276.34 Aligned_cols=180 Identities=22% Similarity=0.180 Sum_probs=155.2
Q ss_pred Cceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 1 MASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 1 ~~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
++||+|| |||| .+|++++.+|.+|+|+.++|++.++++++++|+.|+++|||+||||||+|.|||.+|.+.++|+.
T Consensus 433 lptT~IGSfPrp---~~lr~ar~~~~~G~i~~e~~~~~~~~aI~~~V~~Qe~~GlDvltdGE~~R~dmv~~F~e~L~Gf~ 509 (766)
T PLN02475 433 LPTTTIGSFPQT---VELRRVRREYKAKKISEEDYVKAIKEEIAKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA 509 (766)
T ss_pred CCCccccCCCCC---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeecCceeccchHHHHHHhCCCee
Confidence 4799999 9999 99999999999999999999999999999999999999999999999999999999999998872
Q ss_pred CCccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC-CCCCCceeecH
Q 016581 80 PRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH-GVETVPVLIGP 158 (387)
Q Consensus 80 ~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~-g~~~k~~l~GP 158 (387)
+ +..+..++|++. .|+.|.|.|++.+ ..+..++++++++++ +.+.|++||||
T Consensus 510 --~----------------------~~~g~v~~~g~~-~~r~p~i~G~I~~--~~~~~v~~~~~aq~~t~~~vK~~ltGP 562 (766)
T PLN02475 510 --F----------------------TANGWVQSYGSR-CVKPPIIYGDVSR--PKAMTVFWSSVAQSMTKRPMKGMLTGP 562 (766)
T ss_pred --e----------------------cCCceEEeeCCc-CCCCCeEeccccC--CCCCCHHHHHHHHhccCCccceEEecH
Confidence 1 011233444433 4678999998865 357889999999887 55789999999
Q ss_pred HHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCC
Q 016581 159 VSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDL 214 (387)
Q Consensus 159 ~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l 214 (387)
+|++.++... .|. ++++++.++|.+|++|+++|+++||++||||||+|...+
T Consensus 563 ~Ti~~~s~~r-~~~---~~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~e~~ 614 (766)
T PLN02475 563 VTILNWSFVR-NDQ---PRHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGL 614 (766)
T ss_pred HHHHhhhhcc-cCC---CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchhhcC
Confidence 9999888653 221 689999999999999999999999999999999998754
No 23
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=99.92 E-value=1.3e-24 Score=211.12 Aligned_cols=266 Identities=18% Similarity=0.219 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCCCccCCCCCcchhhhhhhhhcCCccccccccccccCCcc
Q 016581 39 ADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYH 118 (387)
Q Consensus 39 ~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~ 118 (387)
.+.+.+++..|+ +|+|.+++|| +.++ .|+++.|. .-|++.|++
T Consensus 29 ~~~~~~~~~~~~-~g~D~~~~~~----~~~~------------------------~~~ealg~--------~~~~~~~~~ 71 (306)
T cd00465 29 AEWGITLVEPEE-IPLDVIPVHE----DDVL------------------------KVAQALGE--------WAFRYYSQA 71 (306)
T ss_pred chhhceeecccc-CCCCeeeecC----ccee------------------------ehhhhcCc--------eEEecCCCC
Confidence 345556677777 9999999998 1222 33334441 115667778
Q ss_pred eecceeccCcccccCCcccHHHHHHHHhCC-CCCCceeecHHHHHHhcCCCCC-----ccCCCCHHHHHHHHHHHHHHHH
Q 016581 119 FIVPELGPDVKFSYASHKAVTEYKEAKGHG-VETVPVLIGPVSYLLLSKPAWG-----VEKTFSVLSLLPKILPIYKEVV 192 (387)
Q Consensus 119 y~~P~i~~~~~~~~~~~~~~~~~~~ak~~g-~~~k~~l~GP~tl~~~~~~~~~-----~~~~~~~~~l~~~la~~~~~~i 192 (387)
+.+|.+.++.. +...+..+++++.+++.+ .+.+.+++||+|++..+..... |...-+..++++.+++.+.+++
T Consensus 72 p~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~GP~Tla~~l~~~~~~~~~~~~~p~~~~~ll~~i~~~~~~~~ 150 (306)
T cd00465 72 PSVPEIDEEED-PFREAPALEHITAVRSLEEFPTAGAAGGPFTFTHHSMSMGDALMALYERPEAMHELIEYLTEFILEYA 150 (306)
T ss_pred CCCCCcccCCC-hhhHHHHHHHHHHHHhccccceEeecCCHHHHHHHHHcccHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 88887755431 112355678888888873 5667789999999976543222 1110135689999999999999
Q ss_pred HHHHHcCCCEEEecCcccccCC---ChH-HHHHHHHHHHHHHcCCCC-CceEEEEecCCCchhHHHHHHcCCCCEEEEec
Q 016581 193 SELKAAGASWIQFDEPLLVMDL---DSH-KLQAFIHSFRITNCGIQD-TTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 193 ~~L~~aG~~~IQiDEP~l~~~l---~~~-~~~~a~~~~~~~~~~~~~-~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~ 267 (387)
+++.++|+++||++||.++... .++ +.+.+.+.++++++.+.. +..+++|+| |+...+++.+.++++|++++|.
T Consensus 151 ~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~c-g~~~~~~~~l~~~~~d~~~~d~ 229 (306)
T cd00465 151 KTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSC-YDAADLLEEMIQLGVDVISFDM 229 (306)
T ss_pred HHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEEC-CCHHHHHHHHHHhCcceEeccc
Confidence 9999999999999999998762 443 567789999999886542 457899999 5657889999999999999996
Q ss_pred CCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHH
Q 016581 268 SRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVA 347 (387)
Q Consensus 268 ~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~ 347 (387)
...+ ..+..++ ++.++.|.-||.++.. ..++|+|.++++++++.++. +.+++|+||+.+.++.. .+||++|++
T Consensus 230 ~~~d--~~~~~~~-~~~~~~i~Ggv~~~~~--~~~~e~i~~~v~~~l~~~~~-~~il~~~cgi~~~~~~~-~enl~a~v~ 302 (306)
T cd00465 230 TVNE--PKEAIEK-VGEKKTLVGGVDPGYL--PATDEECIAKVEELVERLGP-HYIINPDCGLGPDSDYK-PEHLRAVVQ 302 (306)
T ss_pred ccCC--HHHHHHH-hCCCEEEECCCCcccc--CCCHHHHHHHHHHHHHHhCC-CeEEeCCCCCCCCCCCc-HHHHHHHHH
Confidence 5422 2222232 3323456666656543 45669999999999999876 89999999999887655 799999999
Q ss_pred HHH
Q 016581 348 ATK 350 (387)
Q Consensus 348 ~a~ 350 (387)
+++
T Consensus 303 a~~ 305 (306)
T cd00465 303 LVD 305 (306)
T ss_pred Hhh
Confidence 986
No 24
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=99.85 E-value=2.3e-21 Score=189.95 Aligned_cols=180 Identities=22% Similarity=0.172 Sum_probs=142.0
Q ss_pred ceeecc-CCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCC
Q 016581 2 ASHIVG-YPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (387)
Q Consensus 2 ~tt~vG-~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~ 80 (387)
+||++| ||.+ .+|+.-|++|.+|+||++++.+.+++++.++|+.|++.|||++.+||-.|+|+|..|-+.++|+
T Consensus 434 PTTTIGSFPQT---kelR~~R~~f~~~~IS~edY~k~I~~Ei~kVvkfQEelgiDVLVHGEpERNDMVeyFGEql~Gf-- 508 (765)
T KOG2263|consen 434 PTTTIGSFPQT---KELRRVRREFKAKKISEEDYVKFIKEEIEKVVKFQEELGIDVLVHGEPERNDMVEYFGEQLSGF-- 508 (765)
T ss_pred ccccccCCcch---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHhHHHHhCccEEecCCcccccHHHHHHhhccce--
Confidence 699999 9999 9999999999999999999999999999999999999999999999999999887666555444
Q ss_pred CccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhC-CCCCCceeecHH
Q 016581 81 RFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGH-GVETVPVLIGPV 159 (387)
Q Consensus 81 r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~-g~~~k~~l~GP~ 159 (387)
.++..+....|++. .-+.|.|.|++. +....-+.+-.+|++. ..+.|.+++||+
T Consensus 509 ----------------------aFTvNGWVQSYGSR-cVkPPiI~GDvs--RPk~MtV~~S~~AQs~TsrPmKGMLTgPv 563 (765)
T KOG2263|consen 509 ----------------------AFTVNGWVQSYGSR-CVKPPIIYGDVS--RPKAMTVFWSSYAQSMTSRPMKGMLTGPV 563 (765)
T ss_pred ----------------------EEEecchhHhhcCc-ccCCCeeecccc--CCCcceeeHHHHHHHHhcCcccccccCce
Confidence 12222333223332 133455577653 2234446666778776 345677899999
Q ss_pred HHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCC
Q 016581 160 SYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLD 215 (387)
Q Consensus 160 tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~ 215 (387)
|++.|++..+.. ++.+-..++|-+++.|+.+|.++|+.+||+|||+|..+|+
T Consensus 564 TiL~WSF~R~D~----~~~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREGLP 615 (765)
T KOG2263|consen 564 TILNWSFVRNDQ----PRHETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREGLP 615 (765)
T ss_pred EEEEeccccCCc----chhHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcCCC
Confidence 999998765543 3567788999999999999999999999999999987664
No 25
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=99.73 E-value=5.1e-17 Score=159.42 Aligned_cols=205 Identities=19% Similarity=0.175 Sum_probs=156.0
Q ss_pred cHHHHHHHHhC-C--CCCCceeecHHHHHHhcCCC-CCccCCC-CH---HHHHHHHHHHHHHHHHHHHHcCCCEEEecCc
Q 016581 137 AVTEYKEAKGH-G--VETVPVLIGPVSYLLLSKPA-WGVEKTF-SV---LSLLPKILPIYKEVVSELKAAGASWIQFDEP 208 (387)
Q Consensus 137 ~~~~~~~ak~~-g--~~~k~~l~GP~tl~~~~~~~-~~~~~~~-~~---~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP 208 (387)
.++..+.+++. | ...+..+.||+|++...... +....-+ ++ .++++.+++.+.+.++++.++|++.||++||
T Consensus 111 ~l~a~~~l~~~~~~~~~v~g~~~gP~t~a~~l~g~~~~~~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~ 190 (330)
T cd03465 111 LLEAIRLLKEELGDRVPVIGAVGGPFTLASLLMGASKFLMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDP 190 (330)
T ss_pred HHHHHHHHHHHhCCCeeeeccCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 34555555443 3 34566799999998643221 1100001 33 7888899999999999999999999999999
Q ss_pred ccccCC-ChH-HHHHHHHHHHHHHcCCCC-CceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCC
Q 016581 209 LLVMDL-DSH-KLQAFIHSFRITNCGIQD-TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYD 285 (387)
Q Consensus 209 ~l~~~l-~~~-~~~~a~~~~~~~~~~~~~-~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~ 285 (387)
..+..+ +++ +.+.+.+.++++++.+.. +..+.+|+| ||...+++.+.++++|++++|... ++..++.+ ++ +
T Consensus 191 ~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~c-G~~~~~~~~l~~~~~d~~~~d~~~-dl~~~~~~---~g-~ 264 (330)
T cd03465 191 WASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNC-GDTAPILELMADLGADVFSIDVTV-DLAEAKKK---VG-D 264 (330)
T ss_pred ccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEEC-CCchhHHHHHHHhCCCeEeecccC-CHHHHHHH---hC-C
Confidence 876644 333 577889999988887753 457899999 999899999999999999999544 44333222 21 3
Q ss_pred cccccccccCC-CCCCCCHHHHHHHHHHHHhhcCC--CcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 016581 286 AAIGPGVYDIH-SPRIPSTEEIVDRIYEMRTVLET--NILWVNPDCGLKTRKYTEVKPALSNMVAATK 350 (387)
Q Consensus 286 k~l~lGvvd~~-s~~ve~~e~v~~ri~~a~~~v~~--~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~ 350 (387)
+.+..|.||+. ....+|+|+|.+.+++.++.+.. .+.+++|+||+...+ ..++|++|+++++
T Consensus 265 ~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~~---p~enl~a~v~a~~ 329 (330)
T cd03465 265 KACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPDT---PIENIKAMIDAVR 329 (330)
T ss_pred ceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCC---CHHHHHHHHHHHh
Confidence 68999999997 77789999999999999999865 789999999998655 4699999999987
No 26
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=99.71 E-value=1.9e-16 Score=156.19 Aligned_cols=204 Identities=17% Similarity=0.160 Sum_probs=152.7
Q ss_pred cHHHHHHHHhC-C--CCCCceeecHHHHHHhcCC-CCCccCCC-C---HHHHHHHHHHHHHHHHHHHHHcCCCEEEecCc
Q 016581 137 AVTEYKEAKGH-G--VETVPVLIGPVSYLLLSKP-AWGVEKTF-S---VLSLLPKILPIYKEVVSELKAAGASWIQFDEP 208 (387)
Q Consensus 137 ~~~~~~~ak~~-g--~~~k~~l~GP~tl~~~~~~-~~~~~~~~-~---~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP 208 (387)
.++..+.+++. + .+....+.||+|++..... .+.+..-+ + ..++++.+++.+.+.++++.++|++.||+.||
T Consensus 123 ~leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~ 202 (339)
T PRK06252 123 VLEAIKILKEKVGEEVPIIAGLTGPISLASSLMGPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADP 202 (339)
T ss_pred HHHHHHHHHHHcCCcCceeCccCChHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 35555555543 2 3445569999999864321 11211111 2 34567777788899999999999999999999
Q ss_pred ccccC-CChH-HHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCc
Q 016581 209 LLVMD-LDSH-KLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDA 286 (387)
Q Consensus 209 ~l~~~-l~~~-~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k 286 (387)
..+.. ++++ +.+.+.+.++++++.++.. ...+|+| |+...+++.+.++++|++++|... ++..++.. ++ ++
T Consensus 203 ~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~-~~ilH~c-G~~~~~l~~~~~~g~d~~~~d~~~-dl~~~~~~---~g-~~ 275 (339)
T PRK06252 203 SASPELLGPKMFEEFVLPYLNKIIDEVKGL-PTILHIC-GDLTSILEEMADCGFDGISIDEKV-DVKTAKEN---VG-DR 275 (339)
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHhccC-CcEEEEC-CCchHHHHHHHhcCCCeeccCCCC-CHHHHHHH---hC-CC
Confidence 87533 3444 5778899999999998754 6789999 888889999999999999998543 44333221 21 46
Q ss_pred ccccccccC-CCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 016581 287 AIGPGVYDI-HSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLR 353 (387)
Q Consensus 287 ~l~lGvvd~-~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r 353 (387)
.+..|.+|+ ......|+|+|.++++++++. ...+++|+||+.+.++ .+++++|+++++..+
T Consensus 276 ~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~---g~~Il~~gcgi~~~tp---~enl~a~v~a~~~~~ 337 (339)
T PRK06252 276 AALIGNVSTSFTLLNGTPEKVKAEAKKCLED---GVDILAPGCGIAPKTP---LENIKAMVEARKEYY 337 (339)
T ss_pred eEEEeccCcHHHhcCCCHHHHHHHHHHHHHc---CCCEEcCCCCCCCCCC---HHHHHHHHHHHHHhc
Confidence 899999999 667789999999999999984 4569999999987664 899999999999864
No 27
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=99.70 E-value=2.7e-16 Score=155.22 Aligned_cols=205 Identities=15% Similarity=0.086 Sum_probs=150.8
Q ss_pred ccHHHHHHHHhC-C--CCCCceeecHHHHHHhcCCCC-CccCCC-C---HHHHHHHHHHHHHHHHHHHHHcCCCEEEecC
Q 016581 136 KAVTEYKEAKGH-G--VETVPVLIGPVSYLLLSKPAW-GVEKTF-S---VLSLLPKILPIYKEVVSELKAAGASWIQFDE 207 (387)
Q Consensus 136 ~~~~~~~~ak~~-g--~~~k~~l~GP~tl~~~~~~~~-~~~~~~-~---~~~l~~~la~~~~~~i~~L~~aG~~~IQiDE 207 (387)
..++.++.+++. + .+.+..+.||+|++......+ ....-+ + ..++++-+++...+.++++.++|++.||+.|
T Consensus 122 ~~l~ai~~l~~~~~~~~pv~g~v~GP~Tla~~l~g~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~d 201 (340)
T TIGR01463 122 VVLEAIKILRERYGDTHPIIGPMGGPFTLAQLMIGVSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIAD 201 (340)
T ss_pred hHHHHHHHHHHHcCCceeeeCCCCcHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecC
Confidence 346666766654 3 455667999999986322111 100001 2 3466777778889999999999999999999
Q ss_pred cccccC-CChH-HHHHHHHHHHHHHcCCCC-CceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCC
Q 016581 208 PLLVMD-LDSH-KLQAFIHSFRITNCGIQD-TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQY 284 (387)
Q Consensus 208 P~l~~~-l~~~-~~~~a~~~~~~~~~~~~~-~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~ 284 (387)
|..+.. ++++ +.+.+.+.+++++++++. +....+|+| ||...+++.+.++++|++++|... +++..+.. ++
T Consensus 202 p~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~C-G~~~~~~~~l~~~g~d~ls~d~~~-~l~~~~~~---~g- 275 (340)
T TIGR01463 202 PFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHIC-GFTQPILRDIANNGCFGFSVDMKP-GMDHAKRV---IG- 275 (340)
T ss_pred CccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEC-CCchhhHHHHHHhCCCEEeecCCC-CHHHHHHH---cC-
Confidence 987533 3444 467888999998887642 345689999 888889999999999999999644 44433322 11
Q ss_pred CcccccccccCCC-CCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 016581 285 DAAIGPGVYDIHS-PRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLL 352 (387)
Q Consensus 285 ~k~l~lGvvd~~s-~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~ 352 (387)
++.+..|.||+.. ....|+|+|.+.++++++. .+.+++|+||+.+.+ ..++|++|+++++..
T Consensus 276 ~~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~~---~~~Il~~gcgi~~~t---p~eni~a~v~a~~~~ 338 (340)
T TIGR01463 276 GQASLVGNLSPFSTLMNGTPEKVKKLAKEVLYN---GGDIVMPGCDIDWMT---PLENLKAMIEACKSI 338 (340)
T ss_pred CceEEEecCChHHHhcCCCHHHHHHHHHHHHHc---CCeEECCCCCCCCCC---CHHHHHHHHHHHHhc
Confidence 4567799998854 4568999999999999984 678999999998755 489999999999863
No 28
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=99.58 E-value=2.9e-14 Score=140.05 Aligned_cols=201 Identities=18% Similarity=0.164 Sum_probs=147.7
Q ss_pred cHHHHHHHHhC-C--CCCCceeecHHHHHHhcCC-CCCccCCC----CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCc
Q 016581 137 AVTEYKEAKGH-G--VETVPVLIGPVSYLLLSKP-AWGVEKTF----SVLSLLPKILPIYKEVVSELKAAGASWIQFDEP 208 (387)
Q Consensus 137 ~~~~~~~ak~~-g--~~~k~~l~GP~tl~~~~~~-~~~~~~~~----~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP 208 (387)
.++..+.+++. + .+.-..+.||+|++..... .+.+..-+ ...++++.+++...+.++++.++|++.||+.+|
T Consensus 114 v~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~g~~~~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~ 193 (326)
T cd03307 114 VLEAIKILKEKYGEEVPVIGGMTGPASLASHLAGVENFLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADP 193 (326)
T ss_pred HHHHHHHHHHHcCCcceeeCCCCCHHHHHHHHHhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCC
Confidence 45566665543 3 2334458999999863211 11111001 235677777778889999999999999999999
Q ss_pred ccccCC-ChH-HHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCc
Q 016581 209 LLVMDL-DSH-KLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDA 286 (387)
Q Consensus 209 ~l~~~l-~~~-~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k 286 (387)
..+..+ +++ +.+.+.+.++++++.++. ..+.+|+| |+...+++.+.++++|++++|... +++.++.. ++ ++
T Consensus 194 ~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~~~ilh~c-G~~~~~l~~~~~~g~d~~~~d~~~-dl~e~~~~---~g-~~ 266 (326)
T cd03307 194 TASPELISPEFYEEFALPYHKKIVKELHG-CPTILHIC-GNTTPILEYIAQCGFDGISVDEKV-DVKTAKEI---VG-GR 266 (326)
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHhc-CCcEEEEC-CCChhHHHHHHHcCCCeecccccC-CHHHHHHH---cC-Cc
Confidence 765432 443 577888999999988865 56889999 788889999999999999998533 44433221 21 36
Q ss_pred ccccccccCC-CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 016581 287 AIGPGVYDIH-SPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATK 350 (387)
Q Consensus 287 ~l~lGvvd~~-s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~ 350 (387)
....|.+|+. .....|+|+|.+.+++.++. ...+++|+||+.+.++ .+++++|+++++
T Consensus 267 ~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~---g~~Il~~Gc~i~~~tp---~env~a~v~a~~ 325 (326)
T cd03307 267 AALIGNVSPSQTLLNGTPEDVKAEARKCLED---GVDILAPGCGIAPRTP---LANLKAMVEARK 325 (326)
T ss_pred eEEEeCCChHHHhcCCCHHHHHHHHHHHHHc---cCCEecCcCCCCCCCC---HHHHHHHHHHHh
Confidence 7899999996 66689999999999999987 3468999999987654 899999999986
No 29
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=99.54 E-value=1.7e-13 Score=135.80 Aligned_cols=206 Identities=12% Similarity=0.068 Sum_probs=147.2
Q ss_pred ccHHHHHHHHhC-C--CCCCceeecHHHHHHhcC---CCCCc----cCCC-C---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 016581 136 KAVTEYKEAKGH-G--VETVPVLIGPVSYLLLSK---PAWGV----EKTF-S---VLSLLPKILPIYKEVVSELKAAGAS 201 (387)
Q Consensus 136 ~~~~~~~~ak~~-g--~~~k~~l~GP~tl~~~~~---~~~~~----~~~~-~---~~~l~~~la~~~~~~i~~L~~aG~~ 201 (387)
..++..+.+++. + ++.-..+.||+|++...- ....+ ..-+ + ..++++-+++...+.++++.++|++
T Consensus 122 ~~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad 201 (346)
T PRK00115 122 YVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQ 201 (346)
T ss_pred HHHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666666554 2 222334899999986431 11111 0000 1 3566777778888899999999999
Q ss_pred EEEecCcccccCCChH-HHHHHHHHHHHHHcCCCCC--ceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHh
Q 016581 202 WIQFDEPLLVMDLDSH-KLQAFIHSFRITNCGIQDT--TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVF 278 (387)
Q Consensus 202 ~IQiDEP~l~~~l~~~-~~~~a~~~~~~~~~~~~~~--~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~ 278 (387)
.||+-||.-. .++++ +.+.+.+.++++++.+... ....+|+| |+...+++.+.++++|+++++... ++...+..
T Consensus 202 ~i~i~d~~~~-~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~is~d~~~-dl~~~k~~ 278 (346)
T PRK00115 202 AVQIFDSWAG-ALSPADYREFVLPYMKRIVAELKREHPDVPVILFG-KGAGELLEAMAETGADVVGLDWTV-DLAEARRR 278 (346)
T ss_pred EEEEecCccc-cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc-CCcHHHHHHHHhcCCCEEeeCCCC-CHHHHHHH
Confidence 9999999443 35555 4677888888888777542 24578999 677888999999999999999543 44322222
Q ss_pred hhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 016581 279 REGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLL 352 (387)
Q Consensus 279 ~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~ 352 (387)
++ ++....|.+|+. ....++|+|.+.++++++..+....+++|+||+.+-+ ..+++++|+++++..
T Consensus 279 ---~g-~~~~i~Gni~p~-ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~t---p~eNi~a~v~a~~~y 344 (346)
T PRK00115 279 ---VG-DKKALQGNLDPA-VLLAPPEAIEEEVRAILDGGGGPGHIFNLGHGILPET---PPENVKALVEAVHEL 344 (346)
T ss_pred ---cC-CCeEEEeCCChh-HhcCCHHHHHHHHHHHHHHhCCCCeeeecCCcCCCCc---CHHHHHHHHHHHHHh
Confidence 21 358999999984 3457899999999999998866789999999998754 479999999999863
No 30
>PLN02433 uroporphyrinogen decarboxylase
Probab=99.52 E-value=3.7e-13 Score=133.28 Aligned_cols=208 Identities=13% Similarity=0.050 Sum_probs=148.7
Q ss_pred ccHHHHHHHHhC-C--CCCCceeecHHHHHHhcCC---C----CCccCCC-C---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 016581 136 KAVTEYKEAKGH-G--VETVPVLIGPVSYLLLSKP---A----WGVEKTF-S---VLSLLPKILPIYKEVVSELKAAGAS 201 (387)
Q Consensus 136 ~~~~~~~~ak~~-g--~~~k~~l~GP~tl~~~~~~---~----~~~~~~~-~---~~~l~~~la~~~~~~i~~L~~aG~~ 201 (387)
..++..+.+++. + ++.-..+.||+|++...-. . +....-+ + ..++++.+++...+.++++.++|++
T Consensus 115 ~~leai~~l~~~~~~~v~iig~v~gP~Tla~~l~gg~~~~~~~~~~~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~ 194 (345)
T PLN02433 115 FVGEALKILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQ 194 (345)
T ss_pred HHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 346666666654 3 2223358999999863211 0 0000001 1 3466777777788888989999999
Q ss_pred EEEecCcccccCCChH-HHHHHHHHHHHHHcCCCC---CceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHH
Q 016581 202 WIQFDEPLLVMDLDSH-KLQAFIHSFRITNCGIQD---TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSV 277 (387)
Q Consensus 202 ~IQiDEP~l~~~l~~~-~~~~a~~~~~~~~~~~~~---~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~ 277 (387)
.||+.||. +..++++ +.+.+.+.++++++.+.. +..+.+|+| |+ ..+++.+.++++|+++++... +++..+.
T Consensus 195 ~i~i~d~~-~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c-G~-~~~~~~~~~~~~~~i~~d~~~-dl~e~~~ 270 (345)
T PLN02433 195 VVQIFDSW-AGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN-GS-GGLLERLAGTGVDVIGLDWTV-DMADARR 270 (345)
T ss_pred EEEEecCc-cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC-CC-HHHHHHHHhcCCCEEEcCCCC-CHHHHHH
Confidence 99999994 4446655 467788888888877653 346889999 65 478999999999999998543 4433222
Q ss_pred hhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 016581 278 FREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQ 355 (387)
Q Consensus 278 ~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~ 355 (387)
. ++ ++.+..|.+|+. ....|+|+|.+.++++++..+....+++|+||+..-+ ..+++++|+++++.....
T Consensus 271 ~---~g-~~~~l~GNi~p~-ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~t---p~eNi~a~v~av~~~~~~ 340 (345)
T PLN02433 271 R---LG-SDVAVQGNVDPA-VLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGT---PEENVAHFFDVARELRYE 340 (345)
T ss_pred H---hC-CCeEEEeCCCch-hhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC---CHHHHHHHHHHHHHhChh
Confidence 1 11 468999999973 4578999999999999999765669999999998755 479999999999875543
No 31
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=99.52 E-value=2.5e-13 Score=134.08 Aligned_cols=204 Identities=11% Similarity=0.063 Sum_probs=144.4
Q ss_pred ccHHHHHHHHhC-C--CCCCceeecHHHHHHhcC---CCCCc----cCCC-C---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 016581 136 KAVTEYKEAKGH-G--VETVPVLIGPVSYLLLSK---PAWGV----EKTF-S---VLSLLPKILPIYKEVVSELKAAGAS 201 (387)
Q Consensus 136 ~~~~~~~~ak~~-g--~~~k~~l~GP~tl~~~~~---~~~~~----~~~~-~---~~~l~~~la~~~~~~i~~L~~aG~~ 201 (387)
..++..+.+++. + .+.-..+.||+|++...- ....+ ..-+ + ..++++.+++...+.++++.++|++
T Consensus 116 ~~leai~~l~~~~~~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad 195 (338)
T TIGR01464 116 YVYEAIKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGAQ 195 (338)
T ss_pred HHHHHHHHHHHHcCCCCceEEeCCchHHHHHHHHcCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 346666666654 2 223334899999986321 11110 0001 1 3466667777778888888999999
Q ss_pred EEEecCcccccCCChH-HHHHHHHHHHHHHcCCCCC--ceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHh
Q 016581 202 WIQFDEPLLVMDLDSH-KLQAFIHSFRITNCGIQDT--TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVF 278 (387)
Q Consensus 202 ~IQiDEP~l~~~l~~~-~~~~a~~~~~~~~~~~~~~--~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~ 278 (387)
.||+-||. +..++++ +.+.+.+.++++++.+... ....+|+| |+...+++.+.++++|+++++... ++...+..
T Consensus 196 ~i~i~d~~-~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~c-g~~~~~~~~~~~~~~~~~s~d~~~-dl~e~~~~ 272 (338)
T TIGR01464 196 AVQIFDSW-AGALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFA-KGAGHLLEELAETGADVVGLDWTV-DLKEARKR 272 (338)
T ss_pred EEEEECCc-cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEe-CCcHHHHHHHHhcCCCEEEeCCCC-CHHHHHHH
Confidence 99999994 4335554 5677888888888776532 23469999 677789999999999999999543 44322221
Q ss_pred hhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhc-CCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 016581 279 REGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVL-ETNILWVNPDCGLKTRKYTEVKPALSNMVAATK 350 (387)
Q Consensus 279 ~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v-~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~ 350 (387)
++ ++....|.+|.... ..|+|+|.+.++++++.. +....+++|+||+.+-+ ..+++++|+++++
T Consensus 273 ---~~-~~~~i~Gni~p~~l-~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~~~t---p~eni~a~v~a~~ 337 (338)
T TIGR01464 273 ---VG-PGVAIQGNLDPAVL-YAPEEALEEKVEKILEAFGGKSRYIFNLGHGILPDT---PPENVKALVEYVH 337 (338)
T ss_pred ---hC-CCeeEEeCCChHHh-cCCHHHHHHHHHHHHHHhccCCCceecCCCcCCCCc---CHHHHHHHHHHHh
Confidence 11 35799999998554 679999999999999987 45668999999998755 4789999999876
No 32
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=99.48 E-value=7e-13 Score=130.75 Aligned_cols=203 Identities=11% Similarity=0.045 Sum_probs=144.0
Q ss_pred cHHHHHHHHhC-C--CCCCceeecHHHHHHhcC---CCCC----ccCCC-C---HHHHHHHHHHHHHHHHHHHHHcCCCE
Q 016581 137 AVTEYKEAKGH-G--VETVPVLIGPVSYLLLSK---PAWG----VEKTF-S---VLSLLPKILPIYKEVVSELKAAGASW 202 (387)
Q Consensus 137 ~~~~~~~ak~~-g--~~~k~~l~GP~tl~~~~~---~~~~----~~~~~-~---~~~l~~~la~~~~~~i~~L~~aG~~~ 202 (387)
.++..+.+++. + ++.-..+.||+|++.... .... ...-+ + ..++++.+++...+.++++.++|++.
T Consensus 114 ~leai~~l~~~~~~~~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~ 193 (335)
T cd00717 114 VYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATIEYLKAQIEAGAQA 193 (335)
T ss_pred HHHHHHHHHHHcCCCceEEeecCCHHHHHHHHHCCCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 45566666554 2 222334899999986432 1111 00000 1 34666777777888888889999999
Q ss_pred EEecCcccccCCChH-HHHHHHHHHHHHHcCCCCC--ceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhh
Q 016581 203 IQFDEPLLVMDLDSH-KLQAFIHSFRITNCGIQDT--TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFR 279 (387)
Q Consensus 203 IQiDEP~l~~~l~~~-~~~~a~~~~~~~~~~~~~~--~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~ 279 (387)
||+-||.-. -++++ +.+.+.+.++++++.++.. ....+|+|. +...+++.+.++++|+++++... ++...+..
T Consensus 194 i~i~d~~~~-~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg-~~~~~~~~~~~~~~~~~s~d~~~-dl~e~k~~- 269 (335)
T cd00717 194 VQIFDSWAG-ALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAK-GAGGLLEDLAQLGADVVGLDWRV-DLDEARKR- 269 (335)
T ss_pred EEEeCcccc-cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcC-CCHHHHHHHHhcCCCEEEeCCCC-CHHHHHHH-
Confidence 999999443 35554 4677888888888777542 235699994 55689999999999999999543 44332222
Q ss_pred hccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 016581 280 EGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLET-NILWVNPDCGLKTRKYTEVKPALSNMVAATK 350 (387)
Q Consensus 280 ~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~-~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~ 350 (387)
++ ++.+..|.+|+.. ...++|+|.+.++++++..+. ...+++|+||+.+-+ ..+++++|+++++
T Consensus 270 --~g-~~~~i~Gni~p~~-l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~~t---p~eNi~a~v~a~~ 334 (335)
T cd00717 270 --LG-PKVALQGNLDPAL-LYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGILPDT---PPENVKALVEAVH 334 (335)
T ss_pred --hC-CCeEEEeCCChhh-hcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCCCCc---CHHHHHHHHHHHh
Confidence 11 4789999999854 567889999999999998854 789999999998754 4789999999886
No 33
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=99.38 E-value=1.9e-12 Score=127.84 Aligned_cols=203 Identities=19% Similarity=0.199 Sum_probs=136.3
Q ss_pred cHHHHHHHHhC-C--CCCCceeecHHHHHHhcC---C-CCCccCCC----CHHHHHHHHHHHHHHHHHHHHHcCCCEEEe
Q 016581 137 AVTEYKEAKGH-G--VETVPVLIGPVSYLLLSK---P-AWGVEKTF----SVLSLLPKILPIYKEVVSELKAAGASWIQF 205 (387)
Q Consensus 137 ~~~~~~~ak~~-g--~~~k~~l~GP~tl~~~~~---~-~~~~~~~~----~~~~l~~~la~~~~~~i~~L~~aG~~~IQi 205 (387)
.++..+.+++. + ...-..+.||+|++.... + ++.+..-+ ...++++.+.+.+.+.++.+.++|++.|++
T Consensus 122 ~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~ 201 (343)
T PF01208_consen 122 VLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGRGFEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFI 201 (343)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSSS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCCCHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 34445555542 2 222334899999986432 2 12111001 235777888888889999999999999998
Q ss_pred cCcccccCCChH-HHHHHHHHHHHHHcCCCC-Cc-eEEEEecCCCchhHHHHHHcCCCCEEEEecCCCCh-hhhHHhhhc
Q 016581 206 DEPLLVMDLDSH-KLQAFIHSFRITNCGIQD-TT-QIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNE-NLLSVFREG 281 (387)
Q Consensus 206 DEP~l~~~l~~~-~~~~a~~~~~~~~~~~~~-~~-~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~-e~L~~~~~~ 281 (387)
-+ ....-++++ +.+.+.+.++++++.+.. +. .+.+|+| |+...+++.+.++++|+++++... +. +..+.+.
T Consensus 202 ~d-~~~~~isp~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~c-G~~~~~~~~l~~~g~d~~~~~~~~-~~~~~~~~~~-- 276 (343)
T PF01208_consen 202 FD-SSGSLISPEMFEEFILPYLKKIIDAIKEAGKDPVILHIC-GNTTPILDDLADLGADVLSVDEKV-DLAEAKRKLG-- 276 (343)
T ss_dssp EE-TTGGGS-HHHHHHHTHHHHHHHHHHHHHHETE-EEEEET-THG-GGHHHHHTSS-SEEEE-TTS--HHHHHHHHT--
T ss_pred cc-cccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEC-CchHHHHHHHHhcCCCEEEEcCCC-CHHHHHHHhC--
Confidence 88 434335554 466788888888877653 23 6899999 898899999999999999998433 44 4444332
Q ss_pred cCCCcccccccccCC-CCCCCCHHHHHHHHHHHHhh--cCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 016581 282 VQYDAAIGPGVYDIH-SPRIPSTEEIVDRIYEMRTV--LETNILWVNPDCGLKTRKYTEVKPALSNMVAATKL 351 (387)
Q Consensus 282 ~~~~k~l~lGvvd~~-s~~ve~~e~v~~ri~~a~~~--v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~ 351 (387)
++.+..|.+|.. ... .|+|+|.+.++++++. -+....+++|+|++.+.+ ..+++++|+++++.
T Consensus 277 ---~~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~~---p~eni~a~~~a~~e 342 (343)
T PF01208_consen 277 ---DKIVLMGNIDPVSLLF-GTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPDT---PPENIKAMVEAVKE 342 (343)
T ss_dssp ---TSSEEEEEB-G-GGGG-S-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TTS----HHHHHHHHHHHHH
T ss_pred ---CCeEEECCCCcccccc-CCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCc---CHHHHHHHHHHHHh
Confidence 478999999994 555 9999999999999994 457999999999988754 58999999999875
No 34
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=99.25 E-value=1.6e-10 Score=115.94 Aligned_cols=193 Identities=11% Similarity=0.046 Sum_probs=137.5
Q ss_pred CCceeecHHH-HHHhcCC-CCCccCCC----CHHHHHHHHHHHHHHHHHHHHHcCCCE-EEecCccc-ccCCChH-HHHH
Q 016581 151 TVPVLIGPVS-YLLLSKP-AWGVEKTF----SVLSLLPKILPIYKEVVSELKAAGASW-IQFDEPLL-VMDLDSH-KLQA 221 (387)
Q Consensus 151 ~k~~l~GP~t-l~~~~~~-~~~~~~~~----~~~~l~~~la~~~~~~i~~L~~aG~~~-IQiDEP~l-~~~l~~~-~~~~ 221 (387)
.-..+.||+| ++..... ++....-+ ...++++.+++...+.++...++|++. |.+.+|.- +..++++ +.+.
T Consensus 173 i~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~ef 252 (378)
T cd03308 173 AGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEKF 252 (378)
T ss_pred cceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHHHH
Confidence 3345999997 6633221 11110001 245777888888889999999999994 55566654 3334444 5778
Q ss_pred HHHHHHHHHcCCCC-CceEEEEecCCCchhHHHHHHcCCCC-EEEEecCCCChhhhHHhhhccCCCcccccccccCCCCC
Q 016581 222 FIHSFRITNCGIQD-TTQIHTHMCYSNFNDIIHSIIDMDAD-VITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPR 299 (387)
Q Consensus 222 a~~~~~~~~~~~~~-~~~v~lH~C~gn~~~i~~~l~~l~vD-~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ 299 (387)
+.+.++++++.+.. +..+.+|+| |+...+++.+.+++++ ++++... .++...+.. ++ ++....|.+|+....
T Consensus 253 ~~P~~k~i~~~i~~~g~~~ilh~c-G~~~~~l~~l~~~g~~~v~~~~~~-~dl~~ak~~---~g-~~~~i~GNl~p~~L~ 326 (378)
T cd03308 253 YWPSFKKVVEGLAARGQRIFLFFE-GDWERYLEYLQELPKGKTVGLFEY-GDPKKVKEK---LG-DKKCIAGGFPTTLLK 326 (378)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcC-CCcHHHHHHHHhcCCCcEEEcCCC-CCHHHHHHH---hC-CCEEEEcCCCCHHHh
Confidence 88999998888753 467889999 8988899999999998 5555432 344333222 22 468999999998555
Q ss_pred CCCHHHHHHHHHHHHhhcC-CCcEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 016581 300 IPSTEEIVDRIYEMRTVLE-TNILWVNPDCGLKTRKYTEVKPALSNMVAATK 350 (387)
Q Consensus 300 ve~~e~v~~ri~~a~~~v~-~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~ 350 (387)
..|+|+|.+.++++++... ...-+++|+||+.+.++ ...+++++|+++++
T Consensus 327 ~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp-~~~eNi~a~v~av~ 377 (378)
T cd03308 327 YGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADD-AKPENLIAVIEFVR 377 (378)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCC-CChHHHHHHHHHHh
Confidence 6799999999999999875 46789999999987542 12689999999876
No 35
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=99.15 E-value=6.1e-10 Score=109.13 Aligned_cols=177 Identities=12% Similarity=0.118 Sum_probs=127.1
Q ss_pred CceeecHHHHHHhcCC-CCCccCCC----CHHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcccc---cCCChH-HHHH
Q 016581 152 VPVLIGPVSYLLLSKP-AWGVEKTF----SVLSLLPKILPIYKEVVSELKAA-GASWIQFDEPLLV---MDLDSH-KLQA 221 (387)
Q Consensus 152 k~~l~GP~tl~~~~~~-~~~~~~~~----~~~~l~~~la~~~~~~i~~L~~a-G~~~IQiDEP~l~---~~l~~~-~~~~ 221 (387)
-+.+.||+|.+.+... ++....-+ ...++++.+++...+.++.+.++ |++.||+-|+.-. ..++++ +.+.
T Consensus 116 ~~~~~Gpf~~a~~l~g~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~ef 195 (321)
T cd03309 116 VPLPGGVFERFRLRMSMEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREF 195 (321)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHH
Confidence 3458999998754321 11100000 24577888888888899988888 9999998774332 123444 5677
Q ss_pred HHHHHHHHHcCCCC--CceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCC
Q 016581 222 FIHSFRITNCGIQD--TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPR 299 (387)
Q Consensus 222 a~~~~~~~~~~~~~--~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ 299 (387)
+.+.++++++.++. ...+.+|+| |+...+++.+.++++|+++++....++..++.. ++ ++....|.+|.....
T Consensus 196 v~P~~krIi~~ik~~~g~piilH~c-G~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~---~g-~k~~l~GNlDp~~L~ 270 (321)
T cd03309 196 ILPRMQRIFDFLRSNTSALIVHHSC-GAAASLVPSMAEMGVDSWNVVMTANNTAELRRL---LG-DKVVLAGAIDDVALD 270 (321)
T ss_pred HHHHHHHHHHHHHhccCCceEEEeC-CCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHH---hC-CCeEEEcCCChHHhc
Confidence 88888888877653 346889999 887789999999999999998543344333221 21 467899999986544
Q ss_pred CCC-HHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCC
Q 016581 300 IPS-TEEIVDRIYEMRTVLET-NILWVNPDCGLKTR 333 (387)
Q Consensus 300 ve~-~e~v~~ri~~a~~~v~~-~~l~isPdCGl~~~ 333 (387)
.++ +|++.+.++++++.+++ ..-+.+|+|++-..
T Consensus 271 ~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~~~ 306 (321)
T cd03309 271 TATWPEEDARGVAKAAAECAPIHPFISAPTAGLPFS 306 (321)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCCcc
Confidence 444 89999999999999986 99999999998754
No 36
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=99.13 E-value=1.7e-09 Score=106.41 Aligned_cols=210 Identities=13% Similarity=0.082 Sum_probs=148.3
Q ss_pred cccHHHHHHHHhC-CCCCCc---eeecHHHHHHh-cC--CCCCccC----CC----CHHHHHHHHHHHHHHHHHHHHHcC
Q 016581 135 HKAVTEYKEAKGH-GVETVP---VLIGPVSYLLL-SK--PAWGVEK----TF----SVLSLLPKILPIYKEVVSELKAAG 199 (387)
Q Consensus 135 ~~~~~~~~~ak~~-g~~~k~---~l~GP~tl~~~-~~--~~~~~~~----~~----~~~~l~~~la~~~~~~i~~L~~aG 199 (387)
+.+++..+.+++. +. ..| -.-||+|++.- .. +...+.. -| ...++++.++++....++.+.++|
T Consensus 124 ~~V~~ai~~lrekl~~-~~pLIgf~gsP~TlAsymieg~~s~~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aG 202 (352)
T COG0407 124 PYVLDAIKLLREKLGG-EVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAG 202 (352)
T ss_pred HHHHHHHHHHHHHcCC-CCCeEEecCCHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4467777777643 31 222 37789999852 21 1111110 01 236888999999999999999999
Q ss_pred CCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCC--CceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHH
Q 016581 200 ASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQD--TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSV 277 (387)
Q Consensus 200 ~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~--~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~ 277 (387)
++.|||.|..-......+..+.+.+...++.+.++. .....+|+| ++...+++.+.++++|++++|-.. +++....
T Consensus 203 AdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~pii~f~-~ga~~~l~~m~~~g~d~l~vdw~v-~l~~a~~ 280 (352)
T COG0407 203 ADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVPVIHFC-KGAGHLLEDMAKTGFDVLGVDWRV-DLKEAKK 280 (352)
T ss_pred CCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCCCcEEEEC-CCcHHHHHHHHhcCCcEEeecccc-CHHHHHH
Confidence 999999998543322233556677777777766652 214579999 556788999999999999999534 3332222
Q ss_pred hhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 016581 278 FREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLET-NILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQ 355 (387)
Q Consensus 278 ~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~-~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~ 355 (387)
... ++...-|.+|. ....-+++.|.+.+++.++.... ..-++|+.||+.+.+ .-++++.||++++....+
T Consensus 281 ~~~----~~~~lqGNldP-~lL~~~~~~i~~~~~~iL~~~~~~~~~IfnlGhGI~P~t---p~e~v~~lve~v~~~~~~ 351 (352)
T COG0407 281 RLG----DKVALQGNLDP-ALLYAPPEAIKEEVKRILEDGGDGSGYIFNLGHGILPET---PPENVKALVEAVHEYSRE 351 (352)
T ss_pred HhC----CCceEEeccCh-HhhcCCHHHHHHHHHHHHHHhccCCCceecCCCCcCCCC---CHHHHHHHHHHHHHhccC
Confidence 221 34678899999 66678889999999999988743 588999999999865 479999999999877543
No 37
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=97.41 E-value=0.0016 Score=61.84 Aligned_cols=165 Identities=14% Similarity=0.072 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChH-HHHHHHHHHHHHHcCCC--------CCceEEEEecCCC
Q 016581 177 VLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSH-KLQAFIHSFRITNCGIQ--------DTTQIHTHMCYSN 247 (387)
Q Consensus 177 ~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~-~~~~a~~~~~~~~~~~~--------~~~~v~lH~C~gn 247 (387)
...++.-|..++-+.+.....+|+..+||=| +|+..|.++ +.+++.+.++.+.+.++ +.+.+++..- |+
T Consensus 184 sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFe-SwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~vPmi~fak-G~ 261 (359)
T KOG2872|consen 184 SHALLQILTDAIVEYLVYQVVAGAQALQIFE-SWAGELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAPVPMILFAK-GS 261 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCCCceEEEEc-Cc
Confidence 3577888888888888888999999999998 556668765 46677777776655432 1234555544 44
Q ss_pred chhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 016581 248 FNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPD 327 (387)
Q Consensus 248 ~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPd 327 (387)
. -.++.+.++++|++++|=+....|..+.+. +..-.=|.+|.... -.++|+|.+++++.++..++.+-++|=.
T Consensus 262 g-~~Le~l~~tG~DVvgLDWTvdp~ear~~~g-----~~VtlQGNlDP~~l-y~s~e~it~~v~~mv~~fG~~ryI~NLG 334 (359)
T KOG2872|consen 262 G-GALEELAQTGYDVVGLDWTVDPAEARRRVG-----NRVTLQGNLDPGVL-YGSKEEITQLVKQMVKDFGKSRYIANLG 334 (359)
T ss_pred c-hHHHHHHhcCCcEEeecccccHHHHHHhhC-----CceEEecCCChHHh-cCCHHHHHHHHHHHHHHhCccceEEecC
Confidence 2 458899999999999993332223332222 23445588888654 5789999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHH
Q 016581 328 CGLKTRKYTEVKPALSNMVAATKLLR 353 (387)
Q Consensus 328 CGl~~~~~~~a~~kL~~lv~~a~~~r 353 (387)
-|....++ ...++..+++++.++
T Consensus 335 HGi~p~tp---~e~v~~f~E~~h~~~ 357 (359)
T KOG2872|consen 335 HGITPGTP---PEHVAHFVEAVHKIG 357 (359)
T ss_pred CCCCCCCC---HHHHHHHHHHHHHhc
Confidence 99987664 355667777776653
No 38
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.43 E-value=0.63 Score=43.51 Aligned_cols=144 Identities=13% Similarity=0.153 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCCh-HHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDS-HKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~-~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~l 265 (387)
-+.++++.+.++|++++.+|=..-.+. +. .+-...+..++ .+..+-+|+---|....++.+.+.++|.+++
T Consensus 26 ~l~~el~~l~~~g~d~lHiDVMDG~FV-PNitfGp~~i~~i~-------~~~~~DvHLMv~~P~~~i~~~~~aGad~It~ 97 (228)
T PRK08091 26 KFNETLTTLSENQLRLLHFDIADGQFS-PFFTVGAIAIKQFP-------THCFKDVHLMVRDQFEVAKACVAAGADIVTL 97 (228)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcC-CccccCHHHHHHhC-------CCCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 567889999999999999993221110 10 01112333432 1345677877668778899999999999987
Q ss_pred ecC-CCC-hhhhHHhhhccCCCcccccccc-cCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChhhHHHH
Q 016581 266 ENS-RSN-ENLLSVFREGVQYDAAIGPGVY-DIHSPRIPSTEEIVDRIYEMRTVLET-NILWVNPDCGLKTRKYTEVKPA 341 (387)
Q Consensus 266 E~~-r~~-~e~L~~~~~~~~~~k~l~lGvv-d~~s~~ve~~e~v~~ri~~a~~~v~~-~~l~isPdCGl~~~~~~~a~~k 341 (387)
-.. ..+ .+.++.+++ .+..+-.|++ +..++ + +.++..+..++. --..++|..|=..+ .+.+..|
T Consensus 98 H~Ea~~~~~~~l~~Ik~---~g~~~kaGlalnP~Tp-~-------~~i~~~l~~vD~VLiMtV~PGfgGQ~f-~~~~l~K 165 (228)
T PRK08091 98 QVEQTHDLALTIEWLAK---QKTTVLIGLCLCPETP-I-------SLLEPYLDQIDLIQILTLDPRTGTKAP-SDLILDR 165 (228)
T ss_pred cccCcccHHHHHHHHHH---CCCCceEEEEECCCCC-H-------HHHHHHHhhcCEEEEEEECCCCCCccc-cHHHHHH
Confidence 733 223 356777777 2333466765 44443 2 233334444421 22346675442222 2356777
Q ss_pred HHHHHHHHH
Q 016581 342 LSNMVAATK 350 (387)
Q Consensus 342 L~~lv~~a~ 350 (387)
++.+.+..+
T Consensus 166 I~~lr~~~~ 174 (228)
T PRK08091 166 VIQVENRLG 174 (228)
T ss_pred HHHHHHHHH
Confidence 776655443
No 39
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=94.68 E-value=1.6 Score=40.49 Aligned_cols=146 Identities=17% Similarity=0.249 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEe
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE 266 (387)
-+.++++++.++|+++|-+|=..-.+...-.+-...+++++..+ +..+.+|+=--|....++.+.+.++|.|++-
T Consensus 17 ~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t-----~~p~DvHLMV~~p~~~i~~fa~agad~It~H 91 (220)
T COG0036 17 RLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKIT-----DLPLDVHLMVENPDRYIEAFAKAGADIITFH 91 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcC-----CCceEEEEecCCHHHHHHHHHHhCCCEEEEE
Confidence 57788999999999999999433222100011124566665521 2345566655577888999999999999887
Q ss_pred cCCC-C-hhhhHHhhhccCCCcccccccc-cCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCCh-hhHHHHH
Q 016581 267 NSRS-N-ENLLSVFREGVQYDAAIGPGVY-DIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKY-TEVKPAL 342 (387)
Q Consensus 267 ~~r~-~-~e~L~~~~~~~~~~k~l~lGvv-d~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~-~~a~~kL 342 (387)
.... + .+.++.+++ ..+-.|++ +..+| .+.++..++.++ --++.|-+=||+.... +...+|+
T Consensus 92 ~E~~~~~~r~i~~Ik~-----~G~kaGv~lnP~Tp--------~~~i~~~l~~vD-~VllMsVnPGfgGQ~Fi~~~l~Ki 157 (220)
T COG0036 92 AEATEHIHRTIQLIKE-----LGVKAGLVLNPATP--------LEALEPVLDDVD-LVLLMSVNPGFGGQKFIPEVLEKI 157 (220)
T ss_pred eccCcCHHHHHHHHHH-----cCCeEEEEECCCCC--------HHHHHHHHhhCC-EEEEEeECCCCcccccCHHHHHHH
Confidence 4322 3 567788877 23445554 44443 334444455543 1223333334544321 3567777
Q ss_pred HHHHHHHHH
Q 016581 343 SNMVAATKL 351 (387)
Q Consensus 343 ~~lv~~a~~ 351 (387)
+.+.+....
T Consensus 158 ~~lr~~~~~ 166 (220)
T COG0036 158 RELRAMIDE 166 (220)
T ss_pred HHHHHHhcc
Confidence 777666554
No 40
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=94.20 E-value=0.45 Score=43.62 Aligned_cols=140 Identities=19% Similarity=0.336 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCCEEEecC------cccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCC
Q 016581 187 IYKEVVSELKAAGASWIQFDE------PLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDA 260 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDE------P~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~v 260 (387)
-+.+++++|.++|++++.+|= |.++. .+ ..++.++.. .+..+-+|+--.|....++.+.+.++
T Consensus 13 ~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~--g~----~~i~~i~~~-----~~~~~DvHLMv~~P~~~i~~~~~~g~ 81 (201)
T PF00834_consen 13 NLEEEIKRLEEAGADWLHIDIMDGHFVPNLTF--GP----DIIKAIRKI-----TDLPLDVHLMVENPERYIEEFAEAGA 81 (201)
T ss_dssp GHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B---H----HHHHHHHTT-----SSSEEEEEEESSSGGGHHHHHHHHT-
T ss_pred HHHHHHHHHHHcCCCEEEEeecccccCCcccC--CH----HHHHHHhhc-----CCCcEEEEeeeccHHHHHHHHHhcCC
Confidence 467888999999999999993 33332 22 234444333 24567777776788889999999999
Q ss_pred CEEEEecC-CCC-hhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCc-EEEcCCCCCCCCCh-h
Q 016581 261 DVITIENS-RSN-ENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNI-LWVNPDCGLKTRKY-T 336 (387)
Q Consensus 261 D~i~lE~~-r~~-~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~-l~isPdCGl~~~~~-~ 336 (387)
|.+++... ..+ .+.++.+++ .+...++-+ +..++ ++. ++..+..+ +. +..+-+=||+..+. +
T Consensus 82 ~~i~~H~E~~~~~~~~i~~ik~---~g~k~Gial-nP~T~-~~~-------~~~~l~~v--D~VlvMsV~PG~~Gq~f~~ 147 (201)
T PF00834_consen 82 DYITFHAEATEDPKETIKYIKE---AGIKAGIAL-NPETP-VEE-------LEPYLDQV--DMVLVMSVEPGFGGQKFIP 147 (201)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHH---TTSEEEEEE--TTS--GGG-------GTTTGCCS--SEEEEESS-TTTSSB--HG
T ss_pred CEEEEcccchhCHHHHHHHHHH---hCCCEEEEE-ECCCC-chH-------HHHHhhhc--CEEEEEEecCCCCcccccH
Confidence 99988732 223 457777877 244444443 33332 222 22333333 33 33444446665432 3
Q ss_pred hHHHHHHHHHHHHHH
Q 016581 337 EVKPALSNMVAATKL 351 (387)
Q Consensus 337 ~a~~kL~~lv~~a~~ 351 (387)
.+.+|++.+.+....
T Consensus 148 ~~~~KI~~l~~~~~~ 162 (201)
T PF00834_consen 148 EVLEKIRELRKLIPE 162 (201)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 567777666554443
No 41
>PRK08005 epimerase; Validated
Probab=93.54 E-value=2.6 Score=38.90 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCCCEEEecC------cccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCC
Q 016581 187 IYKEVVSELKAAGASWIQFDE------PLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDA 260 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDE------P~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~v 260 (387)
.+.++++++.++|+++|.+|= |.++. .+ ..++.++..+ +..+-+|+---|....++.+.++++
T Consensus 14 ~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tf--G~----~~i~~l~~~t-----~~~~DvHLMv~~P~~~i~~~~~~ga 82 (210)
T PRK08005 14 RYAEALTALHDAPLGSLHLDIEDTSFINNITF--GM----KTIQAVAQQT-----RHPLSFHLMVSSPQRWLPWLAAIRP 82 (210)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCcccc--CH----HHHHHHHhcC-----CCCeEEEeccCCHHHHHHHHHHhCC
Confidence 577889999999999999993 33222 22 2455554432 2346677776677788999999999
Q ss_pred CEEEEecCC-CC-hhhhHHhhhccCCCcccccccc-cCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChh
Q 016581 261 DVITIENSR-SN-ENLLSVFREGVQYDAAIGPGVY-DIHSPRIPSTEEIVDRIYEMRTVLET-NILWVNPDCGLKTRKYT 336 (387)
Q Consensus 261 D~i~lE~~r-~~-~e~L~~~~~~~~~~k~l~lGvv-d~~s~~ve~~e~v~~ri~~a~~~v~~-~~l~isPdCGl~~~~~~ 336 (387)
|.+++.... .+ .+.++.+++ . +.+ .|+. +..++ + +. ++..+..++. --..+.|+.|=..+- +
T Consensus 83 d~It~H~Ea~~~~~~~l~~Ik~-~--G~k--~GlAlnP~Tp-~---~~----i~~~l~~vD~VlvMsV~PGf~GQ~f~-~ 148 (210)
T PRK08005 83 GWIFIHAESVQNPSEILADIRA-I--GAK--AGLALNPATP-L---LP----YRYLALQLDALMIMTSEPDGRGQQFI-A 148 (210)
T ss_pred CEEEEcccCccCHHHHHHHHHH-c--CCc--EEEEECCCCC-H---HH----HHHHHHhcCEEEEEEecCCCccceec-H
Confidence 999877332 23 357777877 2 333 3443 33332 2 22 2333334321 222355655533322 3
Q ss_pred hHHHHHHHHHHH
Q 016581 337 EVKPALSNMVAA 348 (387)
Q Consensus 337 ~a~~kL~~lv~~ 348 (387)
.+.+|++.+.+.
T Consensus 149 ~~~~KI~~l~~~ 160 (210)
T PRK08005 149 AMCEKVSQSREH 160 (210)
T ss_pred HHHHHHHHHHHh
Confidence 567777766544
No 42
>PLN02334 ribulose-phosphate 3-epimerase
Probab=93.06 E-value=1.5 Score=40.88 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEE--EE
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVI--TI 265 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i--~l 265 (387)
+.++++.+.++|+++||+|.........-.+-...+..++.. . +..+.+|+---|..+.++.+.+.++|++ ++
T Consensus 22 l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~----~-~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~ 96 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH----T-DAPLDCHLMVTNPEDYVPDFAKAGASIFTFHI 96 (229)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhc----C-CCcEEEEeccCCHHHHHHHHHHcCCCEEEEee
Confidence 667888899999999999987764411110100133333322 1 2234566664455677888889999999 66
Q ss_pred ec-CCCC-hhhhHHhhh
Q 016581 266 EN-SRSN-ENLLSVFRE 280 (387)
Q Consensus 266 E~-~r~~-~e~L~~~~~ 280 (387)
|. .... .+.++.+++
T Consensus 97 ~q~~~d~~~~~~~~i~~ 113 (229)
T PLN02334 97 EQASTIHLHRLIQQIKS 113 (229)
T ss_pred ccccchhHHHHHHHHHH
Confidence 62 2212 344555544
No 43
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=92.85 E-value=9.6 Score=36.95 Aligned_cols=153 Identities=15% Similarity=0.222 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecC---C------CchhH
Q 016581 181 LPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCY---S------NFNDI 251 (387)
Q Consensus 181 ~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~---g------n~~~i 251 (387)
++++.++|++.++.|.+-|++.+-|.= .. +....+.|+.+.+.+.+.....+++.+|.-. | ..+..
T Consensus 138 fd~l~~ay~eq~~~Li~gG~D~iLiET-~~----D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~ 212 (311)
T COG0646 138 FDELVEAYREQVEGLIDGGADLILIET-IF----DTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAF 212 (311)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEeh-hc----cHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHH
Confidence 578889999999999999999887762 11 1112346777777777654445666666542 2 23478
Q ss_pred HHHHHcCCCCEEEEecCCCChh----hhHHhhhccCCCcccc----cccccCCCC---CCCCHHHHHHHHHHHHhhcCCC
Q 016581 252 IHSIIDMDADVITIENSRSNEN----LLSVFREGVQYDAAIG----PGVYDIHSP---RIPSTEEIVDRIYEMRTVLETN 320 (387)
Q Consensus 252 ~~~l~~l~vD~i~lE~~r~~~e----~L~~~~~~~~~~k~l~----lGvvd~~s~---~ve~~e~v~~ri~~a~~~v~~~ 320 (387)
+..+..+++|.+.+-- +.+.+ .++.+.+ +. +..|+ .|+-+.... .-++|+++++.+....+.-.
T Consensus 213 ~~~l~~~~~~~vGlNC-a~Gp~~m~~~l~~ls~-~~-~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~-- 287 (311)
T COG0646 213 LNSLEHLGPDAVGLNC-ALGPDEMRPHLRELSR-IA-DAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGG-- 287 (311)
T ss_pred HHHhhccCCcEEeecc-ccCHHHHHHHHHHHHh-cc-CceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCC--
Confidence 8889999999999873 22322 2333433 11 22222 366665555 78999999999998777622
Q ss_pred cEEEcCCCCCCCCChhhHHHHHHHHHHHHH
Q 016581 321 ILWVNPDCGLKTRKYTEVKPALSNMVAATK 350 (387)
Q Consensus 321 ~l~isPdCGl~~~~~~~a~~kL~~lv~~a~ 350 (387)
-=+|.--||-.+ +-+++|+++.+
T Consensus 288 vnIvGGCCGTTP-------eHIraia~~v~ 310 (311)
T COG0646 288 VNIVGGCCGTTP-------EHIRAIAEAVK 310 (311)
T ss_pred ceeeccccCCCH-------HHHHHHHHHhc
Confidence 336778888653 45566665543
No 44
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=92.78 E-value=5.4 Score=37.08 Aligned_cols=139 Identities=20% Similarity=0.275 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCCEEEecC------cccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCC
Q 016581 187 IYKEVVSELKAAGASWIQFDE------PLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDA 260 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDE------P~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~v 260 (387)
-+.+++++|.++|++++.+|= |.++. .+ ..+..++..... ..+-+|+---|....++.+.+.++
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tf--g~----~~i~~i~~~~~~----~~~dvHLMv~~p~~~i~~~~~~ga 82 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLTF--GA----PICKALRDYGIT----APIDVHLMVKPVDRIIPDFAKAGA 82 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCcccc--CH----HHHHHHHHhCCC----CCEEEEeccCCHHHHHHHHHHhCC
Confidence 567899999999999999993 33332 22 345555443112 346677776677788999999999
Q ss_pred CEEEEecCC-CC-hhhhHHhhhccCCCcccccccc-cCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChh
Q 016581 261 DVITIENSR-SN-ENLLSVFREGVQYDAAIGPGVY-DIHSPRIPSTEEIVDRIYEMRTVLET-NILWVNPDCGLKTRKYT 336 (387)
Q Consensus 261 D~i~lE~~r-~~-~e~L~~~~~~~~~~k~l~lGvv-d~~s~~ve~~e~v~~ri~~a~~~v~~-~~l~isPdCGl~~~~~~ 336 (387)
|.+++-... .+ .+.++.+++ . + .-.|+. +..++ .+.++..++.++. =-..+.|+.|=...- +
T Consensus 83 d~i~~H~Ea~~~~~~~l~~ik~-~--g--~k~GlalnP~Tp--------~~~i~~~l~~~D~vlvMtV~PGfgGq~fi-~ 148 (220)
T PRK08883 83 SMITFHVEASEHVDRTLQLIKE-H--G--CQAGVVLNPATP--------LHHLEYIMDKVDLILLMSVNPGFGGQSFI-P 148 (220)
T ss_pred CEEEEcccCcccHHHHHHHHHH-c--C--CcEEEEeCCCCC--------HHHHHHHHHhCCeEEEEEecCCCCCceec-H
Confidence 999877432 23 356777776 1 3 334544 33333 2233344444431 112355644322222 2
Q ss_pred hHHHHHHHHHHHH
Q 016581 337 EVKPALSNMVAAT 349 (387)
Q Consensus 337 ~a~~kL~~lv~~a 349 (387)
...+|++.+.+..
T Consensus 149 ~~lekI~~l~~~~ 161 (220)
T PRK08883 149 HTLDKLRAVRKMI 161 (220)
T ss_pred hHHHHHHHHHHHH
Confidence 4455666655543
No 45
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=92.76 E-value=5.3 Score=37.25 Aligned_cols=139 Identities=19% Similarity=0.301 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCCCEEEecC------cccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCC
Q 016581 187 IYKEVVSELKAAGASWIQFDE------PLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDA 260 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDE------P~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~v 260 (387)
-+.++++.+.++|++++.+|= |.++. .+ ..+..++.... +..+-+|+---|....++.+.+.++
T Consensus 17 ~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tf--g~----~~i~~lr~~~~----~~~~dvHLMv~~P~~~i~~~~~~ga 86 (223)
T PRK08745 17 RLGEEVDNVLKAGADWVHFDVMDNHYVPNLTI--GP----MVCQALRKHGI----TAPIDVHLMVEPVDRIVPDFADAGA 86 (223)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCccc--CH----HHHHHHHhhCC----CCCEEEEeccCCHHHHHHHHHHhCC
Confidence 577889999999999999993 33332 22 24555544311 2346677776677788899999999
Q ss_pred CEEEEecCC-CC-hhhhHHhhhccCCCcccccccc-cCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCChh
Q 016581 261 DVITIENSR-SN-ENLLSVFREGVQYDAAIGPGVY-DIHSPRIPSTEEIVDRIYEMRTVLET-NILWVNPDCGLKTRKYT 336 (387)
Q Consensus 261 D~i~lE~~r-~~-~e~L~~~~~~~~~~k~l~lGvv-d~~s~~ve~~e~v~~ri~~a~~~v~~-~~l~isPdCGl~~~~~~ 336 (387)
|.+++-... .+ .+.++.+++ . + +-.|+. +..++ ++. ++..+..++. --..++|+.|=..+- +
T Consensus 87 d~I~~H~Ea~~~~~~~l~~Ir~-~--g--~k~GlalnP~T~-~~~-------i~~~l~~vD~VlvMtV~PGf~GQ~fi-~ 152 (223)
T PRK08745 87 TTISFHPEASRHVHRTIQLIKS-H--G--CQAGLVLNPATP-VDI-------LDWVLPELDLVLVMSVNPGFGGQAFI-P 152 (223)
T ss_pred CEEEEcccCcccHHHHHHHHHH-C--C--CceeEEeCCCCC-HHH-------HHHHHhhcCEEEEEEECCCCCCcccc-H
Confidence 999877432 23 356777777 2 2 345554 33332 222 2333444321 222466754433322 3
Q ss_pred hHHHHHHHHHHHH
Q 016581 337 EVKPALSNMVAAT 349 (387)
Q Consensus 337 ~a~~kL~~lv~~a 349 (387)
....|++.+.+..
T Consensus 153 ~~l~KI~~l~~~~ 165 (223)
T PRK08745 153 SALDKLRAIRKKI 165 (223)
T ss_pred HHHHHHHHHHHHH
Confidence 4566766665543
No 46
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=91.05 E-value=2.9 Score=48.23 Aligned_cols=175 Identities=17% Similarity=0.221 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChH-HHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcC--CCCEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSH-KLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDM--DADVI 263 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~-~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l--~vD~i 263 (387)
...+.++.+.++|+++|=|. +.... ++.+ ....++..+....+.+ ++.+.+-.. +. .+++.-++. +.+.|
T Consensus 385 ~al~~A~~qve~GA~iIDVn-~g~~~-id~~eem~rvv~~i~~~~~~~--~vPlsIDS~--~~-~ViEaaLk~~~G~~II 457 (1229)
T PRK09490 385 EALDVARQQVENGAQIIDIN-MDEGM-LDSEAAMVRFLNLIASEPDIA--RVPIMIDSS--KW-EVIEAGLKCIQGKGIV 457 (1229)
T ss_pred HHHHHHHHHHHCCCCEEEEC-CCCCC-CCHHHHHHHHHHHHHhhhccC--CceEEEeCC--cH-HHHHHHHhhcCCCCEE
Confidence 44556677889999998886 22111 2222 1223444443221112 345555433 33 445544444 55555
Q ss_pred E---EecCCCChh-hhHHhhhccCCCcccccccccCC--CCCCCCHHHHHHHHHHHHhh---cCCCcEEEcCCCCCCCCC
Q 016581 264 T---IENSRSNEN-LLSVFREGVQYDAAIGPGVYDIH--SPRIPSTEEIVDRIYEMRTV---LETNILWVNPDCGLKTRK 334 (387)
Q Consensus 264 ~---lE~~r~~~e-~L~~~~~~~~~~k~l~lGvvd~~--s~~ve~~e~v~~ri~~a~~~---v~~~~l~isPdCGl~~~~ 334 (387)
. .+.....++ .+..+++ ++..+++..+|-. ....+..=+|++|+.+.+.. ++++++++.|....-...
T Consensus 458 NSIs~~~~~~~~~~~~~l~~k---yga~vV~m~~de~G~~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~Dplv~~v~t~ 534 (1229)
T PRK09490 458 NSISLKEGEEKFIEHARLVRR---YGAAVVVMAFDEQGQADTRERKIEICKRAYDILTEEVGFPPEDIIFDPNIFAVATG 534 (1229)
T ss_pred EeCCCCCCCccHHHHHHHHHH---hCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEcCCcceeecC
Confidence 3 221111222 4455565 3556777777643 11234444677776665432 568999999988776554
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh-CC------------------Ccc-ccCCcchhhh
Q 016581 335 YTEVKPALSNMVAATKLLRTQL-TV------------------PRR-LEGSFLSHCA 371 (387)
Q Consensus 335 ~~~a~~kL~~lv~~a~~~r~~l-~~------------------~~~-~~~~~~~~~~ 371 (387)
-++-........++.+.+++++ ++ .|+ ||+.||.||-
T Consensus 535 ~ee~~~~~~~~leair~ik~~~P~~~~~~GlSNiSFgl~g~~~~R~~lns~FL~~a~ 591 (1229)
T PRK09490 535 IEEHNNYAVDFIEATRWIKQNLPHAKISGGVSNVSFSFRGNNPVREAIHAVFLYHAI 591 (1229)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCcEEEeeccccccCCCCCchHHHHHHHHHHHHH
Confidence 4444455555667888888887 11 355 9999999995
No 47
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=90.90 E-value=2.5 Score=45.63 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=102.2
Q ss_pred HHHHHHHHcCCCE--EEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHH----cCCCCEE
Q 016581 190 EVVSELKAAGASW--IQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSII----DMDADVI 263 (387)
Q Consensus 190 ~~i~~L~~aG~~~--IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~----~l~vD~i 263 (387)
+..+...+.|+.+ |.+|+..+-. . +..++.+|.+.... ++.+.+- .+++..+---|. +.-++.+
T Consensus 58 ~iAr~Qv~~GA~ilDvn~d~~~~D~-----~-~~m~~~l~~~a~~~--~vPlMID--Ss~~eviEagLk~~qGk~ivNSi 127 (842)
T COG1410 58 DVARQQVENGAQILDVNVDYVGRDG-----V-ADMVELLNLLANEP--TVPLMID--SSEWEVIEAGLKCAQGKCIVNSI 127 (842)
T ss_pred HHHHHHHhcCCEEEEeecccccccc-----H-HHHHHHHHHhccCC--CCceEEe--hhHHHHHHHHHhhccCceeeeee
Confidence 3445667889996 5556655322 1 23566666665544 3455443 233332222222 3346777
Q ss_pred EEecCCCCh-hhhHHhhhccCCCcccccccccCC--CCCCCCHHHHHHHHHHHHhhc--CCCcEEEcCCCCCCCCChhhH
Q 016581 264 TIENSRSNE-NLLSVFREGVQYDAAIGPGVYDIH--SPRIPSTEEIVDRIYEMRTVL--ETNILWVNPDCGLKTRKYTEV 338 (387)
Q Consensus 264 ~lE~~r~~~-e~L~~~~~~~~~~k~l~lGvvd~~--s~~ve~~e~v~~ri~~a~~~v--~~~~l~isPdCGl~~~~~~~a 338 (387)
++|.....+ ..+..+++ ++-.++++-+|-. ....+...+|++|+....+.+ |++.+++.|.-=--...-++-
T Consensus 128 s~eege~~f~~~~~Lvkk---YGaaVVvma~DE~GqA~t~eRK~eIakR~y~l~~~~gfpp~dIIfDPnvf~iaTgiEEh 204 (842)
T COG1410 128 NYEEGEERFEKVAELVKK---YGAAVVVMTIDEEGQARTAERKFEIAKRAYILTEEVGFPPEDIIFDPNVFPIATGIEEH 204 (842)
T ss_pred eecccHHHHHHHHHHHHH---hCCcEEEEeeccccccccHHHHHHHHHHHHHHHHhcCCCchheeeccceeeeccchhhh
Confidence 777432223 34555666 3556777777753 334566668999988666665 578788877643322333455
Q ss_pred HHHHHHHHHHHHHHHHHh-------CC----------Ccc-ccCCcchhhhH
Q 016581 339 KPALSNMVAATKLLRTQL-------TV----------PRR-LEGSFLSHCAS 372 (387)
Q Consensus 339 ~~kL~~lv~~a~~~r~~l-------~~----------~~~-~~~~~~~~~~~ 372 (387)
.+.=....++++.++++| ++ .|+ ||.-||.||-+
T Consensus 205 ~~~gvd~Ieair~Ik~~LP~~~tt~GvSNvSFslrg~~Re~lnavFLy~~i~ 256 (842)
T COG1410 205 RNYGVDTIEAIRRIKKELPHVLTTLGLSNVSFGLRGAVREVLNSVFLYEAIS 256 (842)
T ss_pred hhhHHHHHHHHHHHHHhCccceeccccccccCCCChHHHHhhhHHHHHHHHh
Confidence 666677788999999998 11 366 99999999964
No 48
>PRK14057 epimerase; Provisional
Probab=90.72 E-value=9.1 Score=36.40 Aligned_cols=141 Identities=16% Similarity=0.238 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCCEEEecC------cccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCC
Q 016581 187 IYKEVVSELKAAGASWIQFDE------PLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDA 260 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDE------P~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~v 260 (387)
-+.++++.|.++|++++.+|= |.++. .+ ..+..++. +..+-+|+---|....++.+.+.++
T Consensus 33 ~L~~el~~l~~~g~d~lHiDVMDG~FVPNitf--Gp----~~i~~i~~-------~~p~DvHLMV~~P~~~i~~~~~aGa 99 (254)
T PRK14057 33 ALHRYLQQLEALNQPLLHLDLMDGQFCPQFTV--GP----WAVGQLPQ-------TFIKDVHLMVADQWTAAQACVKAGA 99 (254)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCccCCcccc--CH----HHHHHhcc-------CCCeeEEeeeCCHHHHHHHHHHhCC
Confidence 577889999999999999993 33222 22 23444421 2345667776677788899999999
Q ss_pred CEEEEecCC-CC-hhhhHHhhhccCC-----Ccccccccc-cCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCC
Q 016581 261 DVITIENSR-SN-ENLLSVFREGVQY-----DAAIGPGVY-DIHSPRIPSTEEIVDRIYEMRTVLET-NILWVNPDCGLK 331 (387)
Q Consensus 261 D~i~lE~~r-~~-~e~L~~~~~~~~~-----~k~l~lGvv-d~~s~~ve~~e~v~~ri~~a~~~v~~-~~l~isPdCGl~ 331 (387)
|.+++-... .+ .+.+..+++ .+. .+.+-.|+. +..++ ++ .++..+..++. --..++|..|=.
T Consensus 100 d~It~H~Ea~~~~~~~l~~Ir~-~G~k~~~~~~~~kaGlAlnP~Tp-~e-------~i~~~l~~vD~VLvMtV~PGfgGQ 170 (254)
T PRK14057 100 HCITLQAEGDIHLHHTLSWLGQ-QTVPVIGGEMPVIRGISLCPATP-LD-------VIIPILSDVEVIQLLAVNPGYGSK 170 (254)
T ss_pred CEEEEeeccccCHHHHHHHHHH-cCCCcccccccceeEEEECCCCC-HH-------HHHHHHHhCCEEEEEEECCCCCch
Confidence 999877432 23 356777776 221 012346765 34443 22 23333444421 222355654422
Q ss_pred CCChhhHHHHHHHHHHHHH
Q 016581 332 TRKYTEVKPALSNMVAATK 350 (387)
Q Consensus 332 ~~~~~~a~~kL~~lv~~a~ 350 (387)
.+- +.+.+|++.+.+..+
T Consensus 171 ~Fi-~~~l~KI~~lr~~~~ 188 (254)
T PRK14057 171 MRS-SDLHERVAQLLCLLG 188 (254)
T ss_pred hcc-HHHHHHHHHHHHHHH
Confidence 222 356677766555443
No 49
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=89.75 E-value=4.8 Score=37.52 Aligned_cols=89 Identities=13% Similarity=0.149 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCCh-HHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDS-HKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~-~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~l 265 (387)
.+.++++.|.++|++++.+|=..-.+ .+. .+-...++.++.....+ .+.+|+|+. +....++.+.+.++|.+++
T Consensus 20 ~l~~~~~~l~~~~~~~~H~DimDg~f-vpn~~~G~~~v~~lr~~~~~~--~lDvHLm~~--~p~~~i~~~~~~Gad~itv 94 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVMDGHF-VPNLSFGPPVVKSLRKHLPNT--FLDCHLMVS--NPEKWVDDFAKAGASQFTF 94 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcc-CCCcCcCHHHHHHHHhcCCCC--CEEEEECCC--CHHHHHHHHHHcCCCEEEE
Confidence 57788999999999999999322111 011 01113455554433233 245667644 5556678889999999988
Q ss_pred ecCCC-C-h-hhhHHhhh
Q 016581 266 ENSRS-N-E-NLLSVFRE 280 (387)
Q Consensus 266 E~~r~-~-~-e~L~~~~~ 280 (387)
-.... . . +.++.+++
T Consensus 95 H~ea~~~~~~~~l~~ik~ 112 (228)
T PTZ00170 95 HIEATEDDPKAVARKIRE 112 (228)
T ss_pred eccCCchHHHHHHHHHHH
Confidence 74332 2 2 34555555
No 50
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=89.63 E-value=15 Score=33.45 Aligned_cols=149 Identities=15% Similarity=0.214 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEe
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE 266 (387)
-+.++.+++.++||+||-+|=..-.....-.+-...+++++..+.. +-..-+|+--.|-+..++.+.+.+++.+++.
T Consensus 18 nL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~~~~---~~ffD~HmMV~~Peq~V~~~a~agas~~tfH 94 (224)
T KOG3111|consen 18 NLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGA---DPFFDVHMMVENPEQWVDQMAKAGASLFTFH 94 (224)
T ss_pred HHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhccCC---CcceeEEEeecCHHHHHHHHHhcCcceEEEE
Confidence 3567788899999999999943322211111223567777765432 2134456665688889999999999998876
Q ss_pred cCC-CC-hhhhHHhhhccCCCcccccccc-cCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHH
Q 016581 267 NSR-SN-ENLLSVFREGVQYDAAIGPGVY-DIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALS 343 (387)
Q Consensus 267 ~~r-~~-~e~L~~~~~~~~~~k~l~lGvv-d~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~ 343 (387)
... .+ .+..+.+++ +..-+|+. ...++ +|.. . ..++.++ --|+-+-.=||+.. +=+.
T Consensus 95 ~E~~q~~~~lv~~ir~-----~Gmk~G~alkPgT~-Ve~~---~----~~~~~~D-~vLvMtVePGFGGQ------kFme 154 (224)
T KOG3111|consen 95 YEATQKPAELVEKIRE-----KGMKVGLALKPGTP-VEDL---E----PLAEHVD-MVLVMTVEPGFGGQ------KFME 154 (224)
T ss_pred EeeccCHHHHHHHHHH-----cCCeeeEEeCCCCc-HHHH---H----Hhhcccc-EEEEEEecCCCchh------hhHH
Confidence 322 13 456677776 33444443 33332 2222 2 2222222 12334444566653 3345
Q ss_pred HHHHHHHHHHHHhCC
Q 016581 344 NMVAATKLLRTQLTV 358 (387)
Q Consensus 344 ~lv~~a~~~r~~l~~ 358 (387)
.|..=.+.+|+++..
T Consensus 155 ~mm~KV~~lR~kyp~ 169 (224)
T KOG3111|consen 155 DMMPKVEWLREKYPN 169 (224)
T ss_pred HHHHHHHHHHHhCCC
Confidence 555556677787744
No 51
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=89.02 E-value=18 Score=33.93 Aligned_cols=137 Identities=20% Similarity=0.395 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCCEEEecC------cccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCC
Q 016581 187 IYKEVVSELKAAGASWIQFDE------PLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDA 260 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDE------P~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~v 260 (387)
-+.++++.+.+ |+++|.+|= |.++. .+ ..+..++..+ +..+-+|+---|....++.+.+.++
T Consensus 16 ~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tf--g~----~~i~~ir~~t-----~~~~DvHLMv~~P~~~i~~~~~aGa 83 (229)
T PRK09722 16 KFKEQIEFLNS-KADYFHIDIMDGHFVPNLTL--SP----FFVSQVKKLA-----SKPLDVHLMVTDPQDYIDQLADAGA 83 (229)
T ss_pred HHHHHHHHHHh-CCCEEEEecccCccCCCccc--CH----HHHHHHHhcC-----CCCeEEEEEecCHHHHHHHHHHcCC
Confidence 46677888877 999999993 33332 22 2455554421 2346667766677788999999999
Q ss_pred CEEEEecCC--CC-hhhhHHhhhccCCCcccccccc-cCCCCCCCCHHHHHHHHHHHHhhcCC-CcEEEcCCCCCCCCCh
Q 016581 261 DVITIENSR--SN-ENLLSVFREGVQYDAAIGPGVY-DIHSPRIPSTEEIVDRIYEMRTVLET-NILWVNPDCGLKTRKY 335 (387)
Q Consensus 261 D~i~lE~~r--~~-~e~L~~~~~~~~~~k~l~lGvv-d~~s~~ve~~e~v~~ri~~a~~~v~~-~~l~isPdCGl~~~~~ 335 (387)
|.+++-... .+ ...++.+++ . + +-.|+. +..++ + +.++..+..++. --..++| ||+....
T Consensus 84 d~it~H~Ea~~~~~~~~i~~Ik~-~--G--~kaGlalnP~T~-~-------~~l~~~l~~vD~VLvMsV~P--Gf~GQ~f 148 (229)
T PRK09722 84 DFITLHPETINGQAFRLIDEIRR-A--G--MKVGLVLNPETP-V-------ESIKYYIHLLDKITVMTVDP--GFAGQPF 148 (229)
T ss_pred CEEEECccCCcchHHHHHHHHHH-c--C--CCEEEEeCCCCC-H-------HHHHHHHHhcCEEEEEEEcC--CCcchhc
Confidence 998876432 23 346677776 2 3 334554 33333 2 223333334321 2234667 5554322
Q ss_pred -hhHHHHHHHHHHHHH
Q 016581 336 -TEVKPALSNMVAATK 350 (387)
Q Consensus 336 -~~a~~kL~~lv~~a~ 350 (387)
+.+.+|++.+.+..+
T Consensus 149 i~~~l~KI~~lr~~~~ 164 (229)
T PRK09722 149 IPEMLDKIAELKALRE 164 (229)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 356777776665443
No 52
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=88.92 E-value=17 Score=34.57 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=58.0
Q ss_pred CceEEEEecCC--CchhHHHHHHcCCCCE--EEEe-cCCC-ChhhhHHhhhccCCCcccccccccCCC-CCCCCHHHHHH
Q 016581 236 TTQIHTHMCYS--NFNDIIHSIIDMDADV--ITIE-NSRS-NENLLSVFREGVQYDAAIGPGVYDIHS-PRIPSTEEIVD 308 (387)
Q Consensus 236 ~~~v~lH~C~g--n~~~i~~~l~~l~vD~--i~lE-~~r~-~~e~L~~~~~~~~~~k~l~lGvvd~~s-~~ve~~e~v~~ 308 (387)
+..|++|+..+ ...++++.|.+.+++. +.+- ..++ +.+.+..+.+ .+-.+.++...+.. ....+.+...+
T Consensus 149 ~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~---~G~~i~~~~~~~~~~~~~~~~~~~~~ 225 (293)
T cd00530 149 GVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAA---LGAYLEFDGIGKDKIFGYPSDETRAD 225 (293)
T ss_pred CCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHh---CCCEEEeCCCCcccccCCCCHHHHHH
Confidence 55789997643 3456777777665542 2222 2222 4566666655 24455554333211 11334556788
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCC
Q 016581 309 RIYEMRTVLETNILWVNPDCGLKT 332 (387)
Q Consensus 309 ri~~a~~~v~~~~l~isPdCGl~~ 332 (387)
.++++++..+.+++.+++|++..+
T Consensus 226 ~l~~~~~~~~~d~ill~TD~p~~~ 249 (293)
T cd00530 226 AVKALIDEGYGDRLLLSHDVFRKS 249 (293)
T ss_pred HHHHHHHCCCcCCEEEeCCcCchh
Confidence 899999999999999999998853
No 53
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=88.91 E-value=21 Score=33.98 Aligned_cols=168 Identities=10% Similarity=0.138 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcC--CCCEEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDM--DADVIT 264 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l--~vD~i~ 264 (387)
...+.++++.++|+++|=|---. . ..+..+....+++.+.+.. ++.+.+-.. +. .+++.-++. +++.|.
T Consensus 26 ~i~~~A~~~~~~GAdiIDVg~~~--~--~~eE~~r~~~~v~~l~~~~--~~plsIDT~--~~-~v~eaaL~~~~G~~iIN 96 (261)
T PRK07535 26 FIQKLALKQAEAGADYLDVNAGT--A--VEEEPETMEWLVETVQEVV--DVPLCIDSP--NP-AAIEAGLKVAKGPPLIN 96 (261)
T ss_pred HHHHHHHHHHHCCCCEEEECCCC--C--chhHHHHHHHHHHHHHHhC--CCCEEEeCC--CH-HHHHHHHHhCCCCCEEE
Confidence 34455667788999998887321 1 1222233444554443333 334555433 32 344444444 677664
Q ss_pred -EecCCC-ChhhhHHhhhccCCCcccccccccCCCCCCCCHH----HHHHHHHHHHhh-cCCCcEEEcCCCCCCCCChhh
Q 016581 265 -IENSRS-NENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTE----EIVDRIYEMRTV-LETNILWVNPDCGLKTRKYTE 337 (387)
Q Consensus 265 -lE~~r~-~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e----~v~~ri~~a~~~-v~~~~l~isPdCGl~~~~~~~ 337 (387)
+-.... ..+.+..+++ + +..+++=..+.+. .-.+.+ ...+++..+.+. ++++++++-|.-|+-..+.+.
T Consensus 97 sIs~~~~~~~~~~~l~~~-~--g~~vv~m~~~~~g-~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~ 172 (261)
T PRK07535 97 SVSAEGEKLEVVLPLVKK-Y--NAPVVALTMDDTG-IPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDA 172 (261)
T ss_pred eCCCCCccCHHHHHHHHH-h--CCCEEEEecCCCC-CCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHH
Confidence 111011 1234555555 2 2222222222221 112333 333334444322 345899999999943233344
Q ss_pred HHHHHHHHHHHHHHHHHHh--------------CCC-cc-ccCCcchhhh
Q 016581 338 VKPALSNMVAATKLLRTQL--------------TVP-RR-LEGSFLSHCA 371 (387)
Q Consensus 338 a~~kL~~lv~~a~~~r~~l--------------~~~-~~-~~~~~~~~~~ 371 (387)
...-|+++ +.+++.+ +.+ |. ||.-|+.+|.
T Consensus 173 ~~~~l~~i----~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~ 218 (261)
T PRK07535 173 GPEVLETI----RRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAM 218 (261)
T ss_pred HHHHHHHH----HHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHH
Confidence 55555555 4444442 112 33 8888888886
No 54
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=88.45 E-value=23 Score=33.65 Aligned_cols=147 Identities=15% Similarity=0.234 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCEEEec----CcccccCCChH-HHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEE
Q 016581 190 EVVSELKAAGASWIQFD----EPLLVMDLDSH-KLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVIT 264 (387)
Q Consensus 190 ~~i~~L~~aG~~~IQiD----EP~l~~~l~~~-~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~ 264 (387)
+.+..+.++|+++|=|- .|.... .+++ ..+...++++.+.+.. +..+.+-.. +. ++++.-.+.++|.|.
T Consensus 28 ~~a~~~~~~GAdiIDIG~~st~p~~~~-i~~~~E~~rl~~~v~~i~~~~--~~plSIDT~--~~-~v~e~al~~G~~iIN 101 (257)
T cd00739 28 AHAEKMIAEGADIIDIGGESTRPGADP-VSVEEELERVIPVLEALRGEL--DVLISVDTF--RA-EVARAALEAGADIIN 101 (257)
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCC-CCHHHHHHHHHHHHHHHHhcC--CCcEEEeCC--CH-HHHHHHHHhCCCEEE
Confidence 34556678899999986 243322 2222 2334555555544433 345666544 32 456655566888775
Q ss_pred -EecCCCChhhhHHhhhccCCCcccccccccCCCCCC-------CC-HHHHH----HHHHHHHhh-cCCCcEEEcCCCCC
Q 016581 265 -IENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRI-------PS-TEEIV----DRIYEMRTV-LETNILWVNPDCGL 330 (387)
Q Consensus 265 -lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~v-------e~-~e~v~----~ri~~a~~~-v~~~~l~isPdCGl 330 (387)
+.....+.+.++.+++ + +..+++ +=+...|.. ++ .+++. ++++.+.+. ++.+++++-|..||
T Consensus 102 disg~~~~~~~~~l~~~-~--~~~vV~-m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf 177 (257)
T cd00739 102 DVSGGSDDPAMLEVAAE-Y--GAPLVL-MHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGF 177 (257)
T ss_pred eCCCCCCChHHHHHHHH-c--CCCEEE-ECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCc
Confidence 2211112345555665 2 333333 111112211 11 23333 333333332 23579999998887
Q ss_pred CCCChhhHHHHHHHHHH
Q 016581 331 KTRKYTEVKPALSNMVA 347 (387)
Q Consensus 331 ~~~~~~~a~~kL~~lv~ 347 (387)
.-. .+....-|+++..
T Consensus 178 ~ks-~~~~~~~l~~i~~ 193 (257)
T cd00739 178 GKT-PEHNLELLRRLDE 193 (257)
T ss_pred ccC-HHHHHHHHHHHHH
Confidence 543 4444444444433
No 55
>PRK10812 putative DNAse; Provisional
Probab=87.42 E-value=4.5 Score=38.65 Aligned_cols=83 Identities=7% Similarity=0.036 Sum_probs=52.8
Q ss_pred CceEEEEecCCCchhHHHHHHcCCCC---EEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHH
Q 016581 236 TTQIHTHMCYSNFNDIIHSIIDMDAD---VITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYE 312 (387)
Q Consensus 236 ~~~v~lH~C~gn~~~i~~~l~~l~vD---~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~ 312 (387)
+..|.+| |+....++++.|.+.+++ ++ +-.-..+.+.++.+.+ .|-.++++-+-+.. =.+.+++
T Consensus 124 ~~Pv~iH-~r~a~~~~l~iL~~~~~~~~~~v-~H~fsG~~~~a~~~~~---~G~~is~~g~~t~~--------~~~~~~~ 190 (265)
T PRK10812 124 NKPVIVH-TRDARADTLAILREEKVTDCGGV-LHCFTEDRETAGKLLD---LGFYISFSGIVTFR--------NAEQLRD 190 (265)
T ss_pred CCCeEEE-eeCchHHHHHHHHhhcCCCCCEE-EEeecCCHHHHHHHHH---CCCEEEECeeeecC--------ccHHHHH
Confidence 5678899 556667788888765432 33 3321235666666555 24455554322221 1456788
Q ss_pred HHhhcCCCcEEEcCCCCCC
Q 016581 313 MRTVLETNILWVNPDCGLK 331 (387)
Q Consensus 313 a~~~v~~~~l~isPdCGl~ 331 (387)
+++.+|.+++.+.+||.+.
T Consensus 191 ~~~~ipldrlLlETD~P~~ 209 (265)
T PRK10812 191 AARYVPLDRLLVETDSPYL 209 (265)
T ss_pred HHHhCChhhEEEecCCCCC
Confidence 8899999999999999875
No 56
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=85.29 E-value=14 Score=37.33 Aligned_cols=171 Identities=18% Similarity=0.232 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEE
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVI 263 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i 263 (387)
+.|-+..++|.+.||+.|.|-+.+-. +.+.. +-+.+..+-+.++-.+.+|+|.-.| .. ....+ .+.++|.|
T Consensus 156 e~yv~~akel~~~g~DSIciKDmaGl--ltP~~---ayelVk~iK~~~~~pv~lHtH~TsG-~a-~m~ylkAvEAGvD~i 228 (472)
T COG5016 156 EYYVELAKELLEMGVDSICIKDMAGL--LTPYE---AYELVKAIKKELPVPVELHTHATSG-MA-EMTYLKAVEAGVDGI 228 (472)
T ss_pred HHHHHHHHHHHHcCCCEEEeeccccc--CChHH---HHHHHHHHHHhcCCeeEEecccccc-hH-HHHHHHHHHhCcchh
Confidence 34566667788899999999987643 33422 3333333333343345667775544 32 22333 46788887
Q ss_pred EEe-------cCCCChh-hhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhc----CC------CcEEEc
Q 016581 264 TIE-------NSRSNEN-LLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVL----ET------NILWVN 325 (387)
Q Consensus 264 ~lE-------~~r~~~e-~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v----~~------~~l~is 325 (387)
..- ++.+..+ ....++. .+++ +. ..++-.+++++-.+++.+.. ++ .++.++
T Consensus 229 DTAisp~S~gtsqP~tEtmv~aL~g-t~yD---------tg-ld~~~l~~~~~yf~~vrkkY~~~~~~~~~~~d~~ili~ 297 (472)
T COG5016 229 DTAISPLSGGTSQPATETMVAALRG-TGYD---------TG-LDLELLEEIAEYFREVRKKYKGLLEPQAKGVDPRILIY 297 (472)
T ss_pred hhhhccccCCCCCCcHHHHHHHhcC-CCCC---------cc-ccHHHHHHHHHHHHHHHHHHhhccCccccCCCCcceEe
Confidence 533 1122233 2344554 2222 11 12455666666666665544 22 222222
Q ss_pred CC-CCCCC-----CChhhHHHHHHHHHHHHHHHHHHhCCCccccCCcchhh--hHHHHhHHHhhh
Q 016581 326 PD-CGLKT-----RKYTEVKPALSNMVAATKLLRTQLTVPRRLEGSFLSHC--ASIFEQTKAFLS 382 (387)
Q Consensus 326 Pd-CGl~~-----~~~~~a~~kL~~lv~~a~~~r~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~ 382 (387)
+= .|+-+ +...-|..|+..+.+...+||+.|+ |-|-. .|-+--|.||+.
T Consensus 298 qvPGGMlSNl~sQLkeqnaldK~~eVLeEvprVredlG--------ypPLVTPtSQiVGtQAvlN 354 (472)
T COG5016 298 QVPGGMLSNLESQLKEQNALDKLEEVLEEVPRVREDLG--------YPPLVTPTSQIVGTQAVLN 354 (472)
T ss_pred eCChHHHHHHHHHHHHcchhhHHHHHHHHhHHHHhhcC--------CCCccCchhhhhhHHHHHH
Confidence 11 12211 1334577888888888888888887 44332 344445566654
No 57
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=84.82 E-value=35 Score=32.03 Aligned_cols=78 Identities=19% Similarity=0.188 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCCEEEecCcccccCCChHHHH--------------HHHHHHHHHHcCCCCCceEEEEecCCC----
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQ--------------AFIHSFRITNCGIQDTTQIHTHMCYSN---- 247 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~--------------~a~~~~~~~~~~~~~~~~v~lH~C~gn---- 247 (387)
+...++++.|.++|+++|.||=|.--...++...+ ...+.++.+-+.. ++.+++-+-+ |
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~lm~y~-n~~~~ 90 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVLMGYY-NPILQ 90 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEEEEEec-CHHHH
Confidence 34556778899999999999965532222333322 1222332222222 2344432122 3
Q ss_pred --chhHHHHHHcCCCCEEEEe
Q 016581 248 --FNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 248 --~~~i~~~l~~l~vD~i~lE 266 (387)
.+..++.+.+.++|++.+.
T Consensus 91 ~G~~~fi~~~~~aG~~giiip 111 (242)
T cd04724 91 YGLERFLRDAKEAGVDGLIIP 111 (242)
T ss_pred hCHHHHHHHHHHCCCcEEEEC
Confidence 3567888889999999985
No 58
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=83.20 E-value=12 Score=33.74 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEec
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~ 267 (387)
+.+.++.+.++|+++||++.+.+.. .+..+ ....+....... ++.+.+| +-++...+.++|++++..
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~~~---~~~~~-~~~~~~~~~~~~--~~~l~~~-------~~~~~a~~~gad~vh~~~ 89 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGLDT---RERLE-LARALKELCRRY--GVPLIVN-------DRVDLALAVGADGVHLGQ 89 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCH---HHHHH-HHHHHHHHHHHh--CCeEEEe-------ChHHHHHHcCCCEEecCc
Confidence 4456777888999999999886431 22222 222232222222 3445554 236777889999999864
No 59
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=82.69 E-value=53 Score=32.53 Aligned_cols=133 Identities=13% Similarity=0.190 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCCEEEec------CcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEe--cCCCchhHHHHHHcCC
Q 016581 188 YKEVVSELKAAGASWIQFD------EPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHM--CYSNFNDIIHSIIDMD 259 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiD------EP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~--C~gn~~~i~~~l~~l~ 259 (387)
..+.++.|.++|+++|.+= -.++....+..-. .+.++.+...++ +..+...+ ++++... ++...+.+
T Consensus 27 ~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~---~e~i~~~~~~~~-~~~~~~ll~pg~~~~~d-l~~a~~~g 101 (337)
T PRK08195 27 VRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTD---EEYIEAAAEVVK-QAKIAALLLPGIGTVDD-LKMAYDAG 101 (337)
T ss_pred HHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCH---HHHHHHHHHhCC-CCEEEEEeccCcccHHH-HHHHHHcC
Confidence 4456677889999999993 1122111110000 122333333333 23454443 3445543 45666889
Q ss_pred CCEEEEecCCCChh----hhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 016581 260 ADVITIENSRSNEN----LLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKT 332 (387)
Q Consensus 260 vD~i~lE~~r~~~e----~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~ 332 (387)
+|.+-+-+..++.+ .++..++ .+..+...+.+++ .-+++.+.+.++++.+ .+++.+.+.-..|..+
T Consensus 102 vd~iri~~~~~e~~~~~~~i~~ak~---~G~~v~~~l~~a~---~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G~~~ 171 (337)
T PRK08195 102 VRVVRVATHCTEADVSEQHIGLARE---LGMDTVGFLMMSH---MAPPEKLAEQAKLMES-YGAQCVYVVDSAGALL 171 (337)
T ss_pred CCEEEEEEecchHHHHHHHHHHHHH---CCCeEEEEEEecc---CCCHHHHHHHHHHHHh-CCCCEEEeCCCCCCCC
Confidence 99987664333332 2333444 2456777777764 4588898888888765 5889999998888764
No 60
>COG3462 Predicted membrane protein [Function unknown]
Probab=82.28 E-value=1.6 Score=35.58 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=25.1
Q ss_pred cHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 016581 14 KRELKFALESFWDGKSSAEDLQKVSADLR 42 (387)
Q Consensus 14 ~~eL~~a~e~~~~g~i~~~~l~~~~~~~~ 42 (387)
.|..--++|+|.+|+||+||++++.++..
T Consensus 88 sRA~eIlkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 88 SRAEEILKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 36777899999999999999999988753
No 61
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=82.02 E-value=47 Score=31.51 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCCCEEEecC----cccccCCChH-HHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCE
Q 016581 188 YKEVVSELKAAGASWIQFDE----PLLVMDLDSH-KLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDE----P~l~~~l~~~-~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~ 262 (387)
..+.++.+.++|+++|=|-- |.... .+++ ..+.....++.+.+.. ++.+.+|.. +. .++..-.+.++|.
T Consensus 25 ~~~~a~~~~~~GA~iIDIG~~st~p~~~~-i~~~~E~~rl~~~v~~~~~~~--~~plsiDT~--~~-~vi~~al~~G~~i 98 (257)
T TIGR01496 25 AVAHAERMLEEGADIIDVGGESTRPGADR-VSPEEELNRVVPVIKALRDQP--DVPISVDTY--RA-EVARAALEAGADI 98 (257)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHHhcC--CCeEEEeCC--CH-HHHHHHHHcCCCE
Confidence 44556667789999999952 32211 2222 2233555555544333 457888877 33 3455445568887
Q ss_pred EEEecCCC--ChhhhHHhhhccCCCcccccccccCCCCC-------CCC-HHHHHHH----HHHHHhh-cCCCcEEEcCC
Q 016581 263 ITIENSRS--NENLLSVFREGVQYDAAIGPGVYDIHSPR-------IPS-TEEIVDR----IYEMRTV-LETNILWVNPD 327 (387)
Q Consensus 263 i~lE~~r~--~~e~L~~~~~~~~~~k~l~lGvvd~~s~~-------ve~-~e~v~~r----i~~a~~~-v~~~~l~isPd 327 (387)
|. +... +.+.+..+++ + +..+++ +-+...|. -++ .+++.+. ++++.+. ++.+++++.|.
T Consensus 99 IN--sis~~~~~~~~~l~~~-~--~~~vV~-m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg 172 (257)
T TIGR01496 99 IN--DVSGGQDPAMLEVAAE-Y--GVPLVL-MHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDPG 172 (257)
T ss_pred EE--ECCCCCCchhHHHHHH-c--CCcEEE-EeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEECC
Confidence 64 2111 3335555666 2 323333 11111111 111 3333333 3333322 24589999998
Q ss_pred CCCCCCChhhHHHHHHHHHHH
Q 016581 328 CGLKTRKYTEVKPALSNMVAA 348 (387)
Q Consensus 328 CGl~~~~~~~a~~kL~~lv~~ 348 (387)
.||.. +.+....-|+++.+.
T Consensus 173 ~gf~k-s~~~~~~~l~~i~~l 192 (257)
T TIGR01496 173 IGFGK-TPEHNLELLKHLEEF 192 (257)
T ss_pred CCccc-CHHHHHHHHHHHHHH
Confidence 88765 445555555555443
No 62
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=80.41 E-value=20 Score=31.58 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEe
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE 266 (387)
.+.+.++++.++|+++||++.+.... .+.. .....+....... ++.+.+| + -++...+.++|+++++
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~~~~---~~~~-~~~~~i~~~~~~~--~~~l~~~----~---~~~~a~~~g~~~vh~~ 79 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKDLSA---RELL-ELARALRELCRKY--GVPLIIN----D---RVDLALAVGADGVHLG 79 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCH---HHHH-HHHHHHHHHHHHh--CCeEEEe----C---hHHHHHHcCCCEEecC
Confidence 35567777888999999999876432 1121 1223333333322 3334343 2 2556678999999988
Q ss_pred cCCCChhhhHHh
Q 016581 267 NSRSNENLLSVF 278 (387)
Q Consensus 267 ~~r~~~e~L~~~ 278 (387)
........++.+
T Consensus 80 ~~~~~~~~~~~~ 91 (196)
T cd00564 80 QDDLPVAEARAL 91 (196)
T ss_pred cccCCHHHHHHH
Confidence 543333333333
No 63
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=78.73 E-value=79 Score=36.83 Aligned_cols=141 Identities=12% Similarity=0.130 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEE-ecC---C------Cchh
Q 016581 181 LPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTH-MCY---S------NFND 250 (387)
Q Consensus 181 ~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH-~C~---g------n~~~ 250 (387)
.+++.+.|.+.++.|.++||++|-+.= . .+-...+.++.+++.+.+....++.+.+. +|. | +...
T Consensus 143 ~del~~~y~eq~~~L~~~GvD~iliET----i-~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~ 217 (1178)
T TIGR02082 143 YDELVDAYTEQAKGLLDGGVDLLLIET----C-FDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEA 217 (1178)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEec----c-CCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHH
Confidence 377889999999999999999888762 1 11112235667776654332223455555 442 2 2335
Q ss_pred HHHHHHcCCCCEEEEecCCC--Ch-hhhHHhhhccCCCcccccccc------cCCCCCCCCHHHHHHHHHHHHhhcCCCc
Q 016581 251 IIHSIIDMDADVITIENSRS--NE-NLLSVFREGVQYDAAIGPGVY------DIHSPRIPSTEEIVDRIYEMRTVLETNI 321 (387)
Q Consensus 251 i~~~l~~l~vD~i~lE~~r~--~~-e~L~~~~~~~~~~k~l~lGvv------d~~s~~ve~~e~v~~ri~~a~~~v~~~~ 321 (387)
.+..+..+++|++.+--+.. .+ ..++.+.+ .....+++. +....+-++|++.++.+.+..+.- .-
T Consensus 218 ~~~~l~~~~~~avGlNCs~gP~~m~~~l~~l~~----~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~g--gv 291 (1178)
T TIGR02082 218 FLTSLEHAGIDMIGLNCALGPDEMRPHLKHLSE----HAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEG--GL 291 (1178)
T ss_pred HHHHHhcCCCCEEEeCCCCCHHHHHHHHHHHHH----hcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhC--CC
Confidence 67777788999999874432 12 23444443 112233333 222245578999998888876641 23
Q ss_pred EEEcCCCCCCC
Q 016581 322 LWVNPDCGLKT 332 (387)
Q Consensus 322 l~isPdCGl~~ 332 (387)
-+|.=-||-.+
T Consensus 292 ~IIGGCCGTtP 302 (1178)
T TIGR02082 292 NIVGGCCGTTP 302 (1178)
T ss_pred cEEEecCCCCH
Confidence 46888899775
No 64
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=78.40 E-value=42 Score=38.99 Aligned_cols=172 Identities=14% Similarity=0.204 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcC--CCCCceEEEEecCCCchhHHHHHHcC--CCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCG--IQDTTQIHTHMCYSNFNDIIHSIIDM--DAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~--~~~~~~v~lH~C~gn~~~i~~~l~~l--~vD 261 (387)
+...+.++.+.++|+++|=|.-= ....+++. .....++.+... + .++.+.+-.. +. .+++.-++. +.+
T Consensus 368 ~~a~~~A~~qve~GA~iIDVn~~--~~~vd~~e--em~rvv~~i~~~~~~-~~vPlsIDS~--~~-~v~eaaLk~~~G~~ 439 (1178)
T TIGR02082 368 DEALDIAKQQVENGAQILDINVD--YGMLDGVA--AMKRFLNLLASEPDI-STVPLMLDSS--EW-AVLEAGLKCIQGKC 439 (1178)
T ss_pred HHHHHHHHHHHHCCCCEEEECCC--CCCCCHHH--HHHHHHHHHHhccCC-CCCeEEEeCC--cH-HHHHHHHHhcCCCC
Confidence 34455667788999999877731 11122221 223333333221 1 1345555433 33 455554444 666
Q ss_pred EEE---EecCCCCh-hhhHHhhhccCCCcccccccccCC-CC-CCCCHHHHHHH-HHHHHh--hcCCCcEEEcCCCC---
Q 016581 262 VIT---IENSRSNE-NLLSVFREGVQYDAAIGPGVYDIH-SP-RIPSTEEIVDR-IYEMRT--VLETNILWVNPDCG--- 329 (387)
Q Consensus 262 ~i~---lE~~r~~~-e~L~~~~~~~~~~k~l~lGvvd~~-s~-~ve~~e~v~~r-i~~a~~--~v~~~~l~isPdCG--- 329 (387)
.|. .+.-...+ +.+..+++ ++..+++..+|-. .+ ..+..-++++| ++.+.+ =++++++++-|..+
T Consensus 440 IINsIs~~~g~~~~~~~~~l~~~---yga~vV~m~~de~G~p~t~e~r~~i~~~~~~~~~~~~Gi~~edIi~DP~i~~v~ 516 (1178)
T TIGR02082 440 IVNSISLKDGEERFIETAKLIKE---YGAAVVVMAFDEEGQARTADRKIEICKRAYNILTEKVGFPPEDIIFDPNILTIA 516 (1178)
T ss_pred EEEeCCCCCCCccHHHHHHHHHH---hCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCccccc
Confidence 653 22100112 24455555 3556666667543 11 12333345555 444554 25679999999887
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHh-C-------------CC-----cc-ccCCcchhhh
Q 016581 330 LKTRKYTEVKPALSNMVAATKLLRTQL-T-------------VP-----RR-LEGSFLSHCA 371 (387)
Q Consensus 330 l~~~~~~~a~~kL~~lv~~a~~~r~~l-~-------------~~-----~~-~~~~~~~~~~ 371 (387)
++. ++-...+..-.++.+.+++++ + -+ |+ ||+.||.||-
T Consensus 517 ~g~---~e~n~~~~~~le~i~~ik~~~pg~~~~~GlSN~SFglp~~~~~R~~ln~~FL~~a~ 575 (1178)
T TIGR02082 517 TGI---EEHRRYAINFIEAIRWIKEELPDAKISGGVSNVSFSFRGNPAAREAMHSVFLYHAI 575 (1178)
T ss_pred cCc---hHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCCCCCchHHHHHHHHHHHHHH
Confidence 542 221222333335567777766 1 12 55 9999999995
No 65
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=77.33 E-value=5.9 Score=24.84 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 016581 15 RELKFALESFWDGKSSAEDLQKVSADL 41 (387)
Q Consensus 15 ~eL~~a~e~~~~g~i~~~~l~~~~~~~ 41 (387)
.+|....+.|.+|.||.+|+.+.-++.
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 578888899999999999999876553
No 66
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=77.23 E-value=87 Score=36.60 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecC----C------CchhH
Q 016581 182 PKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCY----S------NFNDI 251 (387)
Q Consensus 182 ~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~----g------n~~~i 251 (387)
+++.+.|.+.++.|.+.||++|-+.= . .+-...+.++.+.+.+.+....++.+.+.+.. | +....
T Consensus 160 del~~~y~eQi~~L~e~GVDllliET----i-~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~ 234 (1229)
T PRK09490 160 DELVAAYREQTRGLIEGGADLILIET----I-FDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAF 234 (1229)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEee----e-CCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHH
Confidence 77889999999999999999888762 1 11112234666666554322223333333332 2 22356
Q ss_pred HHHHHcCCCCEEEEecCCC--Ch-hhhHHhhhccCCCcccc----cccccCCCCCCCCHHHHHHHHHHHHhhcCCC-cEE
Q 016581 252 IHSIIDMDADVITIENSRS--NE-NLLSVFREGVQYDAAIG----PGVYDIHSPRIPSTEEIVDRIYEMRTVLETN-ILW 323 (387)
Q Consensus 252 ~~~l~~l~vD~i~lE~~r~--~~-e~L~~~~~~~~~~k~l~----lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~-~l~ 323 (387)
+..+..++++++.+--+.. .+ ..++.+.+ .. +..++ .|.-+....+-++|++.++.+.+..+. . --+
T Consensus 235 ~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~-~~-~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~---G~v~I 309 (1229)
T PRK09490 235 WNSLRHAKPLSIGLNCALGADELRPYVEELSR-IA-DTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAES---GFLNI 309 (1229)
T ss_pred HHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHH-hc-CCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCCCE
Confidence 6666788999999874432 12 23444433 10 11111 243333334567899999888887764 3 346
Q ss_pred EcCCCCCCC
Q 016581 324 VNPDCGLKT 332 (387)
Q Consensus 324 isPdCGl~~ 332 (387)
|.=-||-.+
T Consensus 310 IGGCCGTtP 318 (1229)
T PRK09490 310 VGGCCGTTP 318 (1229)
T ss_pred EEecCCCCH
Confidence 888999775
No 67
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=76.85 E-value=70 Score=30.46 Aligned_cols=137 Identities=14% Similarity=0.153 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCC-ChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDL-DSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l-~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
.+.++.|.++|+++|.+==|.....- .....-.-.+.++.+......+..+..++=.++.. ..++...+.++|.+.+-
T Consensus 23 ~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~ 102 (266)
T cd07944 23 KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVA 102 (266)
T ss_pred HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEe
Confidence 44556688899999988766543210 00000000223333333322234555543222221 33445567889998776
Q ss_pred cCCCChhh----hHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 016581 267 NSRSNENL----LSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKT 332 (387)
Q Consensus 267 ~~r~~~e~----L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~ 332 (387)
...++++. ++..++ .+..+.+++.|+.. -+++.+.+.++++.+ .+++++.+.-..|..+
T Consensus 103 ~~~~~~~~~~~~i~~ak~---~G~~v~~~~~~a~~---~~~~~~~~~~~~~~~-~g~~~i~l~DT~G~~~ 165 (266)
T cd07944 103 FHKHEFDEALPLIKAIKE---KGYEVFFNLMAISG---YSDEELLELLELVNE-IKPDVFYIVDSFGSMY 165 (266)
T ss_pred cccccHHHHHHHHHHHHH---CCCeEEEEEEeecC---CCHHHHHHHHHHHHh-CCCCEEEEecCCCCCC
Confidence 44444443 333444 24578888888755 478888888888765 4899999999998764
No 68
>PRK10508 hypothetical protein; Provisional
Probab=74.08 E-value=5.8 Score=39.25 Aligned_cols=49 Identities=4% Similarity=-0.010 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHH
Q 016581 299 RIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKL 351 (387)
Q Consensus 299 ~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~ 351 (387)
.+.|||+|+++|++..+.++.+++++.+.+ .+.+...+.++.+.++.+.
T Consensus 284 ivGtpe~V~~kl~~l~~~~g~del~~~~~~----~~~e~~~~S~~lla~~~~~ 332 (333)
T PRK10508 284 LVGDKAKVRHGLQSILRETQADEIMVNGQI----FDHQARLHSFELAMDVKEE 332 (333)
T ss_pred EEeCHHHHHHHHHHHHHHHCcCEEEEECCC----CCHHHHHHHHHHHHHHhhh
Confidence 479999999999999999999999999998 3667778888887776654
No 69
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=73.88 E-value=19 Score=32.30 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEe
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE 266 (387)
+.+.++.+.++|+++||+|.............-..++.++... . ..+.+|+-.-|....++.+.+.++|++.+-
T Consensus 14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-~----~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh 87 (211)
T cd00429 14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-D----LPLDVHLMVENPERYIEAFAKAGADIITFH 87 (211)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC-C----CcEEEEeeeCCHHHHHHHHHHcCCCEEEEC
Confidence 4556778889999999998644322101101001223332222 1 133345543354456777789999997665
No 70
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=73.26 E-value=93 Score=30.18 Aligned_cols=147 Identities=12% Similarity=0.212 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCC-EEEe-----cCcccccCCCh-HHHHHHHHHHHHHHcCCCCCceEEEEecCCC-------chhHHHHH
Q 016581 190 EVVSELKAAGAS-WIQF-----DEPLLVMDLDS-HKLQAFIHSFRITNCGIQDTTQIHTHMCYSN-------FNDIIHSI 255 (387)
Q Consensus 190 ~~i~~L~~aG~~-~IQi-----DEP~l~~~l~~-~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn-------~~~i~~~l 255 (387)
++++++.++|++ +|.+ |+-.|.. +.. ...+...++++.+.+. +..+.+|+-.|- +...+..+
T Consensus 127 ~~L~~l~~~G~~~~i~lGlQS~~d~~L~~-i~Rg~t~~~~~~ai~~l~~~---gi~v~~~lI~GlPget~e~~~~t~~~l 202 (302)
T TIGR01212 127 DLLAEYVERGYEVWVELGLQTAHDKTLKK-INRGHDFACYVDAVKRARKR---GIKVCSHVILGLPGEDREEMMETAKIV 202 (302)
T ss_pred HHHHHhhhCCceEEEEEccCcCCHHHHHH-HcCcChHHHHHHHHHHHHHc---CCEEEEeEEECCCCCCHHHHHHHHHHH
Confidence 455566678984 5655 2222211 100 0123456666555432 456778877662 22456667
Q ss_pred HcCCCCEEEEecCCC-ChhhhHH-hhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEE--EcCCCCC-
Q 016581 256 IDMDADVITIENSRS-NENLLSV-FREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILW--VNPDCGL- 330 (387)
Q Consensus 256 ~~l~vD~i~lE~~r~-~~e~L~~-~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~--isPdCGl- 330 (387)
.++++|.+++=.-.. .-.+|.. .++ + .-...+.++..+.+..+++.++++.++ ++-+-+-
T Consensus 203 ~~l~~d~i~i~~l~~~pgT~L~~~~~~----g-----------~~~~~~~~e~~~~~~~~l~~l~~~~~i~Rl~~~~~~~ 267 (302)
T TIGR01212 203 SLLDVDGIKIHPLHVVKGTKMAKMYEK----G-----------ELKTLSLEEYISLACDFLEHLPPEVVIHRISGDAPRE 267 (302)
T ss_pred HhcCCCEEEEEEEEecCCCHHHHHHHc----C-----------CCCCCCHHHHHHHHHHHHHhCCcCeEEEEecCCCCcc
Confidence 789999888652111 1112322 222 1 123567889999999999999987653 2332222
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHH
Q 016581 331 KTRKYTEVKPALSNMVAATKLLRTQ 355 (387)
Q Consensus 331 ~~~~~~~a~~kL~~lv~~a~~~r~~ 355 (387)
....+.+...|-+.+.+.-+.++++
T Consensus 268 ~~l~~~~~~~k~~~l~~i~~~l~~~ 292 (302)
T TIGR01212 268 TLIAPEWCKNKWEIMNKISEELERR 292 (302)
T ss_pred ceEcccccccHHHHHHHHHHHHHHc
Confidence 1234456677877777777777654
No 71
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=72.95 E-value=86 Score=29.63 Aligned_cols=132 Identities=14% Similarity=0.243 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCCEEEecCc------ccccCCChHHHHHHHHHHHHHHcCCCCCceE--EEEecCCCchhHHHHHHcCCC
Q 016581 189 KEVVSELKAAGASWIQFDEP------LLVMDLDSHKLQAFIHSFRITNCGIQDTTQI--HTHMCYSNFNDIIHSIIDMDA 260 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP------~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v--~lH~C~gn~~~i~~~l~~l~v 260 (387)
.+.++.|.++|++.|.+==| ......+......+++.+ .+..+ ++.+ .+..++++... ++...+.++
T Consensus 25 ~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~---~~~~~-~~~~~~~~~~~~~~~~~-i~~a~~~g~ 99 (263)
T cd07943 25 RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAA---AEALK-QAKLGVLLLPGIGTVDD-LKMAADLGV 99 (263)
T ss_pred HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHH---HHhcc-CCEEEEEecCCccCHHH-HHHHHHcCC
Confidence 34556688889999988522 111101110011223333 23233 2233 22334666544 466667899
Q ss_pred CEEEEecCCCChh----hhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 016581 261 DVITIENSRSNEN----LLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKT 332 (387)
Q Consensus 261 D~i~lE~~r~~~e----~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~ 332 (387)
|.+.+-.+-++.+ .++..++ .+..+.+.+.++.. -+++.+.+.++++. ..+++.+.+.-.-|..+
T Consensus 100 ~~iri~~~~s~~~~~~~~i~~ak~---~G~~v~~~~~~~~~---~~~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~ 168 (263)
T cd07943 100 DVVRVATHCTEADVSEQHIGAARK---LGMDVVGFLMMSHM---ASPEELAEQAKLME-SYGADCVYVTDSAGAML 168 (263)
T ss_pred CEEEEEechhhHHHHHHHHHHHHH---CCCeEEEEEEeccC---CCHHHHHHHHHHHH-HcCCCEEEEcCCCCCcC
Confidence 9988775444433 2333444 24566667666532 46788888888765 45889999988888664
No 72
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=72.15 E-value=26 Score=32.18 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEec
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~ 267 (387)
.++.+.++|+.+||+-++.+.. .+..+.+.+....+ ... +..+.+| + -++.-.++++|++++..
T Consensus 24 ~l~~~l~~G~~~vqLR~k~~~~---~~~~~la~~l~~~~-~~~--~~~liIn---d----~~~lA~~~~adGVHlg~ 87 (211)
T PRK03512 24 WIERLLDAGVRTLQLRIKDRRD---EEVEADVVAAIALG-RRY--QARLFIN---D----YWRLAIKHQAYGVHLGQ 87 (211)
T ss_pred HHHHHHhCCCCEEEEcCCCCCH---HHHHHHHHHHHHHH-HHh--CCeEEEe---C----HHHHHHHcCCCEEEcCh
Confidence 4778889999999999988653 22333333333222 222 3456665 1 25555678999999863
No 73
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=70.85 E-value=24 Score=31.36 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=35.4
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++++..++|++.||+|.+. ++..+.+++.++..-. . +.+=++ |+++ .-++.+.++++|+|++=
T Consensus 92 e~~ea~~~g~d~I~lD~~~------~~~~~~~v~~l~~~~~----~--v~ie~S-GGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNMS------PEDLKEAVEELRELNP----R--VKIEAS-GGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHHTT-SEEEEES-C------HHHHHHHHHHHHHHTT----T--SEEEEE-SSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHHhCCCEEEecCcC------HHHHHHHHHHHhhcCC----c--EEEEEE-CCCCHHHHHHHHhcCCCEEEcC
Confidence 3444556899999999763 3333345554433221 2 334444 5553 45777889999999863
No 74
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=69.57 E-value=28 Score=31.62 Aligned_cols=74 Identities=20% Similarity=0.146 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEe
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE 266 (387)
+.+.++.+.++|+++||+|............ ..+..+.+.+..+....+++=++ +....++.+.++++|++.+-
T Consensus 18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~---~~~~~~~i~~~~~~~~~v~l~v~--d~~~~i~~~~~~g~d~v~vh 91 (220)
T PRK05581 18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTI---GPPVVEAIRKVTKLPLDVHLMVE--NPDRYVPDFAKAGADIITFH 91 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCccCCcCCCcCc---CHHHHHHHHhcCCCcEEEEeeeC--CHHHHHHHHHHcCCCEEEEe
Confidence 5567788899999999998633221000001 11222222222221222344333 33344566678999996665
No 75
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=67.98 E-value=75 Score=29.04 Aligned_cols=84 Identities=7% Similarity=0.042 Sum_probs=48.6
Q ss_pred CceEEEEecCCCchhHHHHHHcCC-CCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHH
Q 016581 236 TTQIHTHMCYSNFNDIIHSIIDMD-ADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMR 314 (387)
Q Consensus 236 ~~~v~lH~C~gn~~~i~~~l~~l~-vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~ 314 (387)
+..|.+| |.++...+.+.+.+.+ ...+.+.....+.+.+..+.+ .+-.+.+|.+-.. .+. ..+++++
T Consensus 121 ~~pv~iH-~~~~~~~~~~l~~~~~~~~~~i~H~~~~~~~~~~~~~~---~g~~~~~~~~~~~----~~~----~~~~~~~ 188 (251)
T cd01310 121 NLPVVIH-SRDAHEDVLEILKEYGPPKRGVFHCFSGSAEEAKELLD---LGFYISISGIVTF----KNA----NELREVV 188 (251)
T ss_pred CCCeEEE-eeCchHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHH---cCCEEEeeeeecc----CCC----HHHHHHH
Confidence 4578888 4455667777777775 444444532234555555543 1334544433211 122 2455566
Q ss_pred hhcCCCcEEEcCCCCCC
Q 016581 315 TVLETNILWVNPDCGLK 331 (387)
Q Consensus 315 ~~v~~~~l~isPdCGl~ 331 (387)
+.++++++.+.+|-...
T Consensus 189 ~~~~~dril~~TD~p~~ 205 (251)
T cd01310 189 KEIPLERLLLETDSPYL 205 (251)
T ss_pred HhCChHHEEEcccCCCC
Confidence 78889999999997654
No 76
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=66.95 E-value=1.2e+02 Score=28.81 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHH-HHH----------HHHHHHHcCCC---CCceEEEEecCCCc------
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQ-AFI----------HSFRITNCGIQ---DTTQIHTHMCYSNF------ 248 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~-~a~----------~~~~~~~~~~~---~~~~v~lH~C~gn~------ 248 (387)
.+.+++|.++||++|.|-=|+--...++...| ... ..++. ++.++ .++.+. |+-|-|.
T Consensus 27 ~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~-v~~ir~~~~~~plv-~m~Y~Npi~~~G~ 104 (256)
T TIGR00262 27 LEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFEL-LKKVRQKHPNIPIG-LLTYYNLIFRKGV 104 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHH-HHHHHhcCCCCCEE-EEEeccHHhhhhH
Confidence 34566788899999999877643222232211 111 12211 12221 144554 8888774
Q ss_pred hhHHHHHHcCCCCEEEEec
Q 016581 249 NDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 249 ~~i~~~l~~l~vD~i~lE~ 267 (387)
+..++.+.+.++|++.+.+
T Consensus 105 e~f~~~~~~aGvdgviipD 123 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVAD 123 (256)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 4667788899999988773
No 77
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.14 E-value=1.2e+02 Score=28.58 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecC
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~ 268 (387)
.+.++.|.++|++.|.+-=|... +.. .+.++.+.+..+ +..+..+ |+.+.+. ++...+.++|.+.+-.+
T Consensus 23 ~~i~~~L~~~Gv~~iE~g~p~~~----~~~----~e~~~~l~~~~~-~~~~~~~-~r~~~~~-v~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 23 LAIARALDEAGVDEIEVGIPAMG----EEE----REAIRAIVALGL-PARLIVW-CRAVKED-IEAALRCGVTAVHISIP 91 (259)
T ss_pred HHHHHHHHHcCCCEEEEecCCCC----HHH----HHHHHHHHhcCC-CCEEEEe-ccCCHHH-HHHHHhCCcCEEEEEEe
Confidence 44556688899999999655432 211 233334433332 3344443 4445544 56667889999887643
Q ss_pred CCCh------------------hhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 016581 269 RSNE------------------NLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGL 330 (387)
Q Consensus 269 r~~~------------------e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl 330 (387)
.++. +.++..++ .+..+.+|..|... -+++.+.+.++++.+ .+++.+.+.-..|.
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~-~G~~~i~l~DT~G~ 164 (259)
T cd07939 92 VSDIHLAHKLGKDRAWVLDQLRRLVGRAKD---RGLFVSVGAEDASR---ADPDFLIEFAEVAQE-AGADRLRFADTVGI 164 (259)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEeeccCCC---CCHHHHHHHHHHHHH-CCCCEEEeCCCCCC
Confidence 3322 11223333 24467777766543 468888888888765 58899999988887
Q ss_pred CC
Q 016581 331 KT 332 (387)
Q Consensus 331 ~~ 332 (387)
.+
T Consensus 165 ~~ 166 (259)
T cd07939 165 LD 166 (259)
T ss_pred CC
Confidence 74
No 78
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=65.99 E-value=70 Score=28.29 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEec
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~ 267 (387)
+.+.+.++.+.|+++||+-+|.+.. .+..+.+......+- .. +..+.+|- + ++...+.++|++++..
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~---~~~~~~a~~l~~~~~-~~--~~~liin~---~----~~la~~~~~dGvHl~~ 80 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSD---EELLELARRLAELCQ-KY--GVPLIIND---R----VDLALELGADGVHLGQ 80 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-H---HHHHHHHHHHHHHHH-HT--TGCEEEES--------HHHHHHCT-SEEEEBT
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCc---cHHHHHHHHHHHHhh-cc--eEEEEecC---C----HHHHHhcCCCEEEecc
Confidence 3445556677899999999996543 223333444443333 22 44677762 2 4566789999999985
Q ss_pred C
Q 016581 268 S 268 (387)
Q Consensus 268 ~ 268 (387)
.
T Consensus 81 ~ 81 (180)
T PF02581_consen 81 S 81 (180)
T ss_dssp T
T ss_pred c
Confidence 3
No 79
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=65.69 E-value=31 Score=33.23 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++.+..++|+++|++|. +.++..+.+++.+ ++.. .+.+ -|.||.+ +-++....++||+||+=
T Consensus 200 ~~~eAl~agaDiImLDN------m~~e~~~~av~~l-----~~~~--~~~l-EaSGgIt~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 200 EAEEALEAGADIIMLDN------MSPEELKEAVKLL-----GLAG--RALL-EASGGITLENIREYAETGVDVISVG 262 (280)
T ss_pred HHHHHHHcCCCEEEecC------CCHHHHHHHHHHh-----ccCC--ceEE-EEeCCCCHHHHHHHhhcCCCEEEeC
Confidence 34555678999999995 3343333344443 3332 2223 4568775 45677789999999865
No 80
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=64.45 E-value=22 Score=27.58 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 016581 15 RELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMS 50 (387)
Q Consensus 15 ~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~ 50 (387)
++|.....+|..|+||.+++.+.+++....+-..++
T Consensus 35 ~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~~~~ 70 (79)
T PF05120_consen 35 RELAELQEALEAGEISEEEFERREDELLDRLEEARR 70 (79)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999999999998877765553
No 81
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=63.85 E-value=1.6e+02 Score=29.17 Aligned_cols=131 Identities=10% Similarity=0.182 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCCEEEec------CcccccCCC--hHHHHHHHHHHHHHHcCCCCCceEEEEecC--CCchhHHHHHHc
Q 016581 188 YKEVVSELKAAGASWIQFD------EPLLVMDLD--SHKLQAFIHSFRITNCGIQDTTQIHTHMCY--SNFNDIIHSIID 257 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiD------EP~l~~~l~--~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~--gn~~~i~~~l~~ 257 (387)
..+.++.|.++|+++|.+= .-++..+.+ +++ +.++.+.+.++. ..+.+.+-. |+.+. ++...+
T Consensus 26 ~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~-----e~i~~~~~~~~~-~~~~~ll~pg~~~~~d-l~~a~~ 98 (333)
T TIGR03217 26 VRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDL-----EYIEAAADVVKR-AKVAVLLLPGIGTVHD-LKAAYD 98 (333)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChH-----HHHHHHHHhCCC-CEEEEEeccCccCHHH-HHHHHH
Confidence 3455677888999999993 112221111 111 223333333432 345444432 34433 456667
Q ss_pred CCCCEEEEecCCCChh----hhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 016581 258 MDADVITIENSRSNEN----LLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKT 332 (387)
Q Consensus 258 l~vD~i~lE~~r~~~e----~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~ 332 (387)
.++|.+-+-+.-++.+ .++..++ .+..+...+.+++ .-++|.+++.++++.+ .+++.++|.-..|..+
T Consensus 99 ~gvd~iri~~~~~e~d~~~~~i~~ak~---~G~~v~~~l~~s~---~~~~e~l~~~a~~~~~-~Ga~~i~i~DT~G~~~ 170 (333)
T TIGR03217 99 AGARTVRVATHCTEADVSEQHIGMARE---LGMDTVGFLMMSH---MTPPEKLAEQAKLMES-YGADCVYIVDSAGAML 170 (333)
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHHH---cCCeEEEEEEccc---CCCHHHHHHHHHHHHh-cCCCEEEEccCCCCCC
Confidence 8999988764333322 2333444 2445666666664 4578888888888655 5889999999998764
No 82
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.94 E-value=40 Score=32.74 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++.+..++|+++||+|. +.++..+.+++.++ . .+.+-.. |+.+ +-+.....++||+|++=
T Consensus 209 ea~~a~~agaDiImLDn------mspe~l~~av~~~~-------~--~~~leaS-GGI~~~ni~~yA~tGVD~Is~g 269 (290)
T PRK06559 209 AAEEAAAAGADIIMLDN------MSLEQIEQAITLIA-------G--RSRIECS-GNIDMTTISRFRGLAIDYVSSG 269 (290)
T ss_pred HHHHHHHcCCCEEEECC------CCHHHHHHHHHHhc-------C--ceEEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 44556678999999995 33433334444332 1 2334444 6654 45677789999999864
No 83
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=62.33 E-value=1.7e+02 Score=28.93 Aligned_cols=147 Identities=8% Similarity=0.050 Sum_probs=72.3
Q ss_pred HHHHHHHH-HcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch---hHHHHHH-cCCCC-E
Q 016581 189 KEVVSELK-AAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN---DIIHSII-DMDAD-V 262 (387)
Q Consensus 189 ~~~i~~L~-~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~---~i~~~l~-~l~vD-~ 262 (387)
++..+... +.|+++|-|.--.-..+-.+...+.+....+.+.+.+ ++.+.+-.| ||-+ .+++.-+ .++=. .
T Consensus 78 ~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eav--d~PL~Id~s-~n~~kD~evleaale~~~g~~p 154 (319)
T PRK04452 78 AAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAV--DVPLIIGGS-GNPEKDAEVLEKVAEAAEGERC 154 (319)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhC--CCCEEEecC-CCCCCCHHHHHHHHHHhCCCCC
Confidence 44455555 7899988887211111000111224555666666666 556777777 6422 3333332 22211 1
Q ss_pred EEEecCCC-Chhhh-HHhhhccCCCc-ccccccccCCCCCCCCHHHHHHHHHHHHhhc--CCCcEEEcCCCCCCCCChhh
Q 016581 263 ITIENSRS-NENLL-SVFREGVQYDA-AIGPGVYDIHSPRIPSTEEIVDRIYEMRTVL--ETNILWVNPDCGLKTRKYTE 337 (387)
Q Consensus 263 i~lE~~r~-~~e~L-~~~~~~~~~~k-~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v--~~~~l~isPdCGl~~~~~~~ 337 (387)
+ |=+... +++.+ ...++ + +. .+++...| .+ +++++...+... |++++++.|.+.--....+.
T Consensus 155 L-InSat~en~~~i~~lA~~-y--~~~Vva~s~~D--------ln-~ak~L~~~l~~~Gi~~edIviDP~~~~lg~g~e~ 221 (319)
T PRK04452 155 L-LGSAEEDNYKKIAAAAMA-Y--GHAVIAWSPLD--------IN-LAKQLNILLTELGVPRERIVMDPTTGALGYGIEY 221 (319)
T ss_pred E-EEECCHHHHHHHHHHHHH-h--CCeEEEEcHHH--------HH-HHHHHHHHHHHcCCCHHHEEEeCCcccccCCHHH
Confidence 1 111111 35433 33344 2 33 33333333 44 444444444444 45999999998533334456
Q ss_pred HHHHHHHHHHHHHH
Q 016581 338 VKPALSNMVAATKL 351 (387)
Q Consensus 338 a~~kL~~lv~~a~~ 351 (387)
+...+..++.+|=.
T Consensus 222 ~~~~~e~IR~aAl~ 235 (319)
T PRK04452 222 SYSVMERIRLAALK 235 (319)
T ss_pred HHHHHHHHHHHHhc
Confidence 67777777666653
No 84
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=62.16 E-value=1.5e+02 Score=28.26 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecC
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~ 268 (387)
.+.++.|.++|++.|++=-|... ++.. .+.+.+.. .+. ...+..+ ++.|.+. ++...++++|.+.+-.+
T Consensus 25 ~~i~~~L~~~Gv~~IEvG~P~~~----~~~~-~~~~~l~~--~~~--~~~v~~~-~r~~~~d-i~~a~~~g~~~i~i~~~ 93 (262)
T cd07948 25 IEIAKALDAFGVDYIELTSPAAS----PQSR-ADCEAIAK--LGL--KAKILTH-IRCHMDD-ARIAVETGVDGVDLVFG 93 (262)
T ss_pred HHHHHHHHHcCCCEEEEECCCCC----HHHH-HHHHHHHh--CCC--CCcEEEE-ecCCHHH-HHHHHHcCcCEEEEEEe
Confidence 34566788899999999777543 2221 12222211 122 2344444 4456654 55666789999888632
Q ss_pred CC----------C-hhhhHHhhh----ccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 016581 269 RS----------N-ENLLSVFRE----GVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKT 332 (387)
Q Consensus 269 r~----------~-~e~L~~~~~----~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~ 332 (387)
-+ . -+.++.+.+ ....+..+.+++.|+.... ++.+.+-++++.+ .+++++.+.-.-|..+
T Consensus 94 ~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~---~~~l~~~~~~~~~-~g~~~i~l~Dt~G~~~ 168 (262)
T cd07948 94 TSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD---LVDLLRVYRAVDK-LGVNRVGIADTVGIAT 168 (262)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC---HHHHHHHHHHHHH-cCCCEEEECCcCCCCC
Confidence 22 1 122322211 0012457888888875432 6666666666544 4889999888888664
No 85
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=62.08 E-value=27 Score=33.55 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
+++...++|+++||+|.|.. +..+.+++. .-.+.+ . +.+=. .|+.+ +-+....++++|++++=
T Consensus 194 ea~~A~~~GaDiI~LDn~~~------e~l~~~v~~---~~~~~~-~--~~ieA-sGgIt~~ni~~ya~~GvD~IsvG 257 (273)
T PRK05848 194 EAKNAMNAGADIVMCDNMSV------EEIKEVVAY---RNANYP-H--VLLEA-SGNITLENINAYAKSGVDAISSG 257 (273)
T ss_pred HHHHHHHcCCCEEEECCCCH------HHHHHHHHH---hhccCC-C--eEEEE-ECCCCHHHHHHHHHcCCCEEEeC
Confidence 44555678999999998742 222223332 212221 2 22333 37765 45677789999999864
No 86
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.01 E-value=45 Score=32.48 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++++..++|+++||+|.. .++..+.++..+ +. .+.+-.. |+.+ +-+....+++||+||+=
T Consensus 217 ea~eA~~aGaDiImLDnm------spe~l~~av~~~-------~~--~~~lEaS-GGIt~~ni~~yA~tGVD~IS~g 277 (294)
T PRK06978 217 QLETALAHGAQSVLLDNF------TLDMMREAVRVT-------AG--RAVLEVS-GGVNFDTVRAFAETGVDRISIG 277 (294)
T ss_pred HHHHHHHcCCCEEEECCC------CHHHHHHHHHhh-------cC--CeEEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 445566789999999953 343322344432 22 2334444 6654 45677789999999864
No 87
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=60.03 E-value=24 Score=37.22 Aligned_cols=55 Identities=16% Similarity=0.365 Sum_probs=37.4
Q ss_pred CCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEec----CCCchhHHHHHH
Q 016581 199 GASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMC----YSNFNDIIHSII 256 (387)
Q Consensus 199 G~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C----~gn~~~i~~~l~ 256 (387)
|.++..+|||.-.+++.+. ..+..+-++.+.+.-...||+|.| .||++..++.|.
T Consensus 190 ~~~~~~~d~~~~~~~vtp~---~ii~~l~~~~~~lg~ph~iH~h~nnlg~pgn~~~t~~t~~ 248 (541)
T cd01304 190 GQNVLSLDDPVPYFDITPR---EILKGLAEANEELGLPHSIHVHCNNLGVPGNYETTLETMK 248 (541)
T ss_pred CCccccccCCCCCCCCCHH---HHHHHHHHHHHhcCCceEEEEccccCCCCCcHHHHHHHHH
Confidence 3344589999987877774 345666666665544568899977 578876666663
No 88
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=58.82 E-value=29 Score=36.78 Aligned_cols=54 Identities=15% Similarity=0.305 Sum_probs=38.0
Q ss_pred CCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEec----CCCchhHHHHHH
Q 016581 200 ASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMC----YSNFNDIIHSII 256 (387)
Q Consensus 200 ~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C----~gn~~~i~~~l~ 256 (387)
.++..+|||.-.+++.+. ..+..+-++.+.+.-...||+|.| .|||+..++.|.
T Consensus 195 ~~~~~~d~~~~~~~vtp~---~i~~~l~~~~e~l~lph~~h~H~nnlg~pgn~~~t~~t~~ 252 (556)
T TIGR03121 195 ENVLSLDDPVPYFGITPR---EIIKGLARANEELGLPHSIHVHCNNLGVPGNYETTLDTLD 252 (556)
T ss_pred CccccccCCCCCCCCCHH---HHHHHHHHHHHhcCCCceEEEecCCCCCCCchHHHHHHHH
Confidence 344589999987877774 356666666666544567999988 588886666664
No 89
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=58.69 E-value=80 Score=31.48 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEe
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE 266 (387)
+.+.++.+.++|+.+||+-++.+.. .+..+.+.. +..+.... +..+.+| +-++.-..+++|++++.
T Consensus 159 ll~~l~~al~~Gv~~VQLR~K~~~~---~~~~~~a~~-L~~l~~~~--~~~lIIN-------D~vdlAl~~~aDGVHLg 224 (347)
T PRK02615 159 LLEVVEAALKGGVTLVQYRDKTADD---RQRLEEAKK-LKELCHRY--GALFIVN-------DRVDIALAVDADGVHLG 224 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCH---HHHHHHHHH-HHHHHHHh--CCeEEEe-------ChHHHHHHcCCCEEEeC
Confidence 3345667778899999999987542 122223333 33333332 2345554 22455567899999986
No 90
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.37 E-value=53 Score=31.74 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++.+..++|+++||+|. +.++..+.++..+ +.. ..+-.. |+.+ .-+....+++||+||+=
T Consensus 205 e~~ea~~~gaDiImLDn------~s~e~l~~av~~~-------~~~--~~leaS-GgI~~~ni~~yA~tGVD~Is~g 265 (281)
T PRK06543 205 QIEPVLAAGVDTIMLDN------FSLDDLREGVELV-------DGR--AIVEAS-GNVNLNTVGAIASTGVDVISVG 265 (281)
T ss_pred HHHHHHhcCCCEEEECC------CCHHHHHHHHHHh-------CCC--eEEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 44555678999999995 3343333344433 111 223334 6654 45667778999999864
No 91
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.01 E-value=57 Score=31.67 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++.+..++|+++||+|. +.++..+.+++.++. ..+. +.+=.. |+.+ +-+....+++||+|++=
T Consensus 211 ea~eal~~gaDiI~LDn------m~~e~vk~av~~~~~----~~~~--v~ieaS-GGI~~~ni~~yA~tGvD~Is~g 274 (289)
T PRK07896 211 QLDEVLAEGAELVLLDN------FPVWQTQEAVQRRDA----RAPT--VLLESS-GGLTLDTAAAYAETGVDYLAVG 274 (289)
T ss_pred HHHHHHHcCCCEEEeCC------CCHHHHHHHHHHHhc----cCCC--EEEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 33445678999999994 344443345554322 2222 334444 6664 55777889999999864
No 92
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.69 E-value=85 Score=31.16 Aligned_cols=90 Identities=11% Similarity=0.130 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecC-----------ccccc--C-CChHH---HHHHHHHHHHHHcCCC----
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGASWIQFDE-----------PLLVM--D-LDSHK---LQAFIHSFRITNCGIQ---- 234 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDE-----------P~l~~--~-l~~~~---~~~a~~~~~~~~~~~~---- 234 (387)
+.+| ++.+.+.|.+..+.+.++|++.|+|.- |...- | -.++. .+...+.+..+-+.++
T Consensus 135 t~~e-I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~ 213 (353)
T cd04735 135 THEE-IEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHAD 213 (353)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccC
Confidence 4444 467888888888888999999999985 33211 0 01111 1234444444444443
Q ss_pred CCceEEEEecCCCc-------h---hHHHHHHcCCCCEEEEe
Q 016581 235 DTTQIHTHMCYSNF-------N---DIIHSIIDMDADVITIE 266 (387)
Q Consensus 235 ~~~~v~lH~C~gn~-------~---~i~~~l~~l~vD~i~lE 266 (387)
.+..|.+.+...++ + .++..|.+.++|.+++-
T Consensus 214 ~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs 255 (353)
T cd04735 214 KDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHIS 255 (353)
T ss_pred CCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 56678887764222 1 46677778889998875
No 93
>PRK08999 hypothetical protein; Provisional
Probab=57.41 E-value=55 Score=31.62 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEec
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~ 267 (387)
.+.++++.+.|+.+||+-++.+.. .+.. .....+....... +..+.+| +. ++...++++|++++-.
T Consensus 147 ~~~~~~~l~~g~~~vqlR~k~~~~---~~~~-~~~~~l~~~~~~~--~~~liin---d~----~~la~~~~~~GvHl~~ 212 (312)
T PRK08999 147 LARLERALAAGIRLIQLRAPQLPP---AAYR-ALARAALGLCRRA--GAQLLLN---GD----PELAEDLGADGVHLTS 212 (312)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCH---HHHH-HHHHHHHHHHHHh--CCEEEEE---Cc----HHHHHhcCCCEEEcCh
Confidence 345555568899999999987542 2222 2333344444433 3466676 22 4566788999999873
No 94
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=57.01 E-value=1.3e+02 Score=27.56 Aligned_cols=143 Identities=17% Similarity=0.290 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch---hHHHHHHcCCCCEEEE
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN---DIIHSIIDMDADVITI 265 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~---~i~~~l~~l~vD~i~l 265 (387)
.+.++.|.++|++.|.+=-|... ++.. ..+..+...... ..+..+ |+.+.. ..++.+.+.++|.+.+
T Consensus 17 ~~i~~~L~~~Gv~~iEvg~~~~~----~~~~-~~v~~~~~~~~~----~~~~~~-~~~~~~~i~~~~~~~~~~g~~~i~i 86 (237)
T PF00682_consen 17 LEIAKALDEAGVDYIEVGFPFAS----EDDF-EQVRRLREALPN----ARLQAL-CRANEEDIERAVEAAKEAGIDIIRI 86 (237)
T ss_dssp HHHHHHHHHHTTSEEEEEHCTSS----HHHH-HHHHHHHHHHHS----SEEEEE-EESCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHhCCCEEEEcccccC----HHHH-HHhhhhhhhhcc----ccccee-eeehHHHHHHHHHhhHhccCCEEEe
Confidence 34455678889999998844332 2222 122333333333 233332 333333 2244456789999988
Q ss_pred ecCCCC--------------hhhh----HHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 016581 266 ENSRSN--------------ENLL----SVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPD 327 (387)
Q Consensus 266 E~~r~~--------------~e~L----~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPd 327 (387)
-.+.++ ++.+ +..++ .+..+.+|..|... -+++.+.+.++++.+. +++.+.+.-.
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~---~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~-g~~~i~l~Dt 159 (237)
T PF00682_consen 87 FISVSDLHIRKNLNKSREEALERIEEAVKYAKE---LGYEVAFGCEDASR---TDPEELLELAEALAEA-GADIIYLADT 159 (237)
T ss_dssp EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHH---TTSEEEEEETTTGG---SSHHHHHHHHHHHHHH-T-SEEEEEET
T ss_pred cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHh---cCCceEeCcccccc---ccHHHHHHHHHHHHHc-CCeEEEeeCc
Confidence 754444 2222 22233 24567777776643 3567777777776655 7899988877
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016581 328 CGLKTRKYTEVKPALSNMVAATKLLRTQLT 357 (387)
Q Consensus 328 CGl~~~~~~~a~~kL~~lv~~a~~~r~~l~ 357 (387)
-|..+ |.. +.+..+.+++++.
T Consensus 160 ~G~~~--P~~-------v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 160 VGIMT--PED-------VAELVRALREALP 180 (237)
T ss_dssp TS-S---HHH-------HHHHHHHHHHHST
T ss_pred cCCcC--HHH-------HHHHHHHHHHhcc
Confidence 77663 222 3344555555555
No 95
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.49 E-value=63 Score=31.20 Aligned_cols=65 Identities=18% Similarity=0.384 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++.+..++|+++||+|-+. ++..+.+++.++.. +.++ .+.+=.. |+.+ +-+..+.++++|+|++=
T Consensus 194 ea~~a~~agaDiI~LDn~~------~e~l~~~v~~l~~~--~~~~--~~~leaS-GGI~~~ni~~yA~tGvD~Is~g 259 (278)
T PRK08385 194 DALKAAKAGADIIMLDNMT------PEEIREVIEALKRE--GLRE--RVKIEVS-GGITPENIEEYAKLDVDVISLG 259 (278)
T ss_pred HHHHHHHcCcCEEEECCCC------HHHHHHHHHHHHhc--CcCC--CEEEEEE-CCCCHHHHHHHHHcCCCEEEeC
Confidence 4455567899999999753 33333444443221 2122 2334444 6665 55777889999999864
No 96
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=56.41 E-value=1.1e+02 Score=27.27 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEec
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~ 267 (387)
+.+.++.+.+.|+++||+.++.+.. .+..+.+ ..+....... +..+.+| + -++...+.++|++++..
T Consensus 15 ~~~~~~~~~~~g~~~v~lR~~~~~~---~~~~~~~-~~l~~~~~~~--~~~l~i~----~---~~~la~~~g~~GvHl~~ 81 (196)
T TIGR00693 15 LLNRVEAALKGGVTLVQLRDKGSNT---RERLALA-EKLQELCRRY--GVPFIVN----D---RVDLALALGADGVHLGQ 81 (196)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCH---HHHHHHH-HHHHHHHHHh--CCeEEEE----C---HHHHHHHcCCCEEecCc
Confidence 3345566778899999999886432 2222222 2232332222 2345554 1 24566788999999863
No 97
>PRK01060 endonuclease IV; Provisional
Probab=56.19 E-value=86 Score=29.56 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=23.9
Q ss_pred ceEEEEe-cCCCchhHHHHHHcCCCCEEEEe
Q 016581 237 TQIHTHM-CYSNFNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 237 ~~v~lH~-C~gn~~~i~~~l~~l~vD~i~lE 266 (387)
+.+++|. |++++...++.+.++++|++-|-
T Consensus 2 ~~~g~~~~~~~~~~~~l~~~~~~G~d~vEl~ 32 (281)
T PRK01060 2 KLIGAHVSAAGGLEGAVAEAAEIGANAFMIF 32 (281)
T ss_pred CeEEEeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 3567775 57888899999999999999653
No 98
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=56.12 E-value=2.2e+02 Score=28.39 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecCC
Q 016581 190 EVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (387)
Q Consensus 190 ~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r 269 (387)
+.++.|.++|++.|.+-=|..+ +.. .+.++.+.+..+. ..+ +..|+.+... ++...++++|.+.+-.+.
T Consensus 27 ~ia~~L~~~Gv~~IEvG~p~~~----~~~----~e~i~~i~~~~~~-~~i-~~~~r~~~~d-i~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 27 AIARALDEAGVDELEVGIPAMG----EEE----RAVIRAIVALGLP-ARL-MAWCRARDAD-IEAAARCGVDAVHISIPV 95 (365)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----HHH----HHHHHHHHHcCCC-cEE-EEEcCCCHHH-HHHHHcCCcCEEEEEEcc
Confidence 3456678889999999756533 211 2233333333332 333 3445556543 566778899998877443
Q ss_pred CCh-----------h-------hhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC
Q 016581 270 SNE-----------N-------LLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLK 331 (387)
Q Consensus 270 ~~~-----------e-------~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~ 331 (387)
++. + .++..++ .+..+.++.-|.. .-+++.+.+.++.+.+ .+++++.+.-..|..
T Consensus 96 Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~---~g~~v~~~~ed~~---r~~~~~l~~~~~~~~~-~Ga~~i~l~DT~G~~ 168 (365)
T TIGR02660 96 SDLQIEAKLRKDRAWVLERLARLVSFARD---RGLFVSVGGEDAS---RADPDFLVELAEVAAE-AGADRFRFADTVGIL 168 (365)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHHHHHHh---CCCEEEEeecCCC---CCCHHHHHHHHHHHHH-cCcCEEEEcccCCCC
Confidence 321 1 1222333 2445677766653 2357888888887655 588999998888866
Q ss_pred C
Q 016581 332 T 332 (387)
Q Consensus 332 ~ 332 (387)
+
T Consensus 169 ~ 169 (365)
T TIGR02660 169 D 169 (365)
T ss_pred C
Confidence 4
No 99
>PRK07695 transcriptional regulator TenI; Provisional
Probab=55.58 E-value=99 Score=27.81 Aligned_cols=59 Identities=5% Similarity=0.080 Sum_probs=35.5
Q ss_pred HHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEec
Q 016581 195 LKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 195 L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~ 267 (387)
+.++|+++||+.++.+.. .+..+.+.... . .+.+ ...+.+| + -.+.....++|++++-.
T Consensus 23 ~~~~g~~~iqlR~k~~~~---~~~~~~~~~l~-~--~~~~-~~~liin---~----~~~la~~~~~~gvHl~~ 81 (201)
T PRK07695 23 QIHSEVDYIHIREREKSA---KELYEGVESLL-K--KGVP-ASKLIIN---D----RVDIALLLNIHRVQLGY 81 (201)
T ss_pred HHhCCCCEEEEcCCCCCH---HHHHHHHHHHH-H--hCCC-CCeEEEE---C----HHHHHHHcCCCEEEeCc
Confidence 668899999999998664 22222222222 1 1222 2346665 1 25566788999999864
No 100
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=55.34 E-value=1.8e+02 Score=27.03 Aligned_cols=133 Identities=12% Similarity=0.154 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecC
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~ 268 (387)
.+.++.|.++|+++|.+==|.-.... +. .+...+.++.+.+..+ +..+.. +|..+ ...+..+.+.++|.+.+=..
T Consensus 22 ~~i~~~L~~~GV~~IEvg~~~~~~~~-p~-~~~~~~~i~~l~~~~~-~~~~~~-l~~~~-~~~i~~a~~~g~~~i~i~~~ 96 (265)
T cd03174 22 LEIAEALDEAGVDSIEVGSGASPKAV-PQ-MEDDWEVLRAIRKLVP-NVKLQA-LVRNR-EKGIERALEAGVDEVRIFDS 96 (265)
T ss_pred HHHHHHHHHcCCCEEEeccCcCcccc-cc-CCCHHHHHHHHHhccC-CcEEEE-EccCc-hhhHHHHHhCCcCEEEEEEe
Confidence 44556677889999998866543111 10 0112333444444332 334433 34332 45677888888888876632
Q ss_pred CC--------------Chh----hhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 016581 269 RS--------------NEN----LLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGL 330 (387)
Q Consensus 269 r~--------------~~e----~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl 330 (387)
.+ .++ .++..++ .+..+.+.+.++..+ ..+++.+.+.++++.+ .+++.+.+...-|.
T Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~-~~~~~~l~~~~~~~~~-~g~~~i~l~Dt~G~ 171 (265)
T cd03174 97 ASETHSRKNLNKSREEDLENAEEAIEAAKE---AGLEVEGSLEDAFGC-KTDPEYVLEVAKALEE-AGADEISLKDTVGL 171 (265)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEEEeecCC-CCCHHHHHHHHHHHHH-cCCCEEEechhcCC
Confidence 22 122 1223333 245677777666554 5788888888888664 47888988887665
Q ss_pred C
Q 016581 331 K 331 (387)
Q Consensus 331 ~ 331 (387)
.
T Consensus 172 ~ 172 (265)
T cd03174 172 A 172 (265)
T ss_pred c
Confidence 3
No 101
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=55.02 E-value=90 Score=28.83 Aligned_cols=66 Identities=15% Similarity=0.081 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEec
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~ 267 (387)
.+.+++..+.|++.||+-|-.... .+..+.+.++...+ ... ++.+.++ +-++.-.+.++|++++-.
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~---~~~~~~a~~~~~lc-~~~--~v~liIN-------d~~dlA~~~~AdGVHlGq 89 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSD---EEYLALAEKLRALC-QKY--GVPLIIN-------DRVDLALAVGADGVHLGQ 89 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCh---HHHHHHHHHHHHHH-HHh--CCeEEec-------CcHHHHHhCCCCEEEcCC
Confidence 345566678899999999977554 22233344443333 332 3345453 225555678889998874
No 102
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.73 E-value=77 Score=30.75 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++.+..++|+++||+|- +.++..+.+++.++.. .+. +.+=.. |+.+ .-++.+.++++|+|++=
T Consensus 208 ea~eA~~~GaD~I~LDn------~~~e~l~~av~~~~~~----~~~--i~leAs-GGIt~~ni~~ya~tGvD~Isvg 271 (288)
T PRK07428 208 QVQEALEYGADIIMLDN------MPVDLMQQAVQLIRQQ----NPR--VKIEAS-GNITLETIRAVAETGVDYISSS 271 (288)
T ss_pred HHHHHHHcCCCEEEECC------CCHHHHHHHHHHHHhc----CCC--eEEEEE-CCCCHHHHHHHHHcCCCEEEEc
Confidence 34445578999999992 3343333444443221 112 223233 5554 45677789999999864
No 103
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=54.12 E-value=74 Score=30.67 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++++..++|+++||+|. +.++..+.+++.++ +... .+.+-.. |+.+ +-+..+.++++|+|+.=
T Consensus 200 ea~ea~~~GaDiI~lDn------~~~e~l~~~v~~l~----~~~~--~~~leas-GGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 200 QALTVLQASPDILQLDK------FTPQQLHHLHERLK----FFDH--IPTLAAA-GGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred HHHHHHHcCcCEEEECC------CCHHHHHHHHHHHh----ccCC--CEEEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 45566788999999993 44444333444432 2222 2334455 5554 45677789999999753
No 104
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=54.04 E-value=71 Score=29.96 Aligned_cols=96 Identities=5% Similarity=0.072 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCC--EEEEecCCCChhhhHHhhhccCCCcccccccccCCCC
Q 016581 221 AFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDAD--VITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSP 298 (387)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD--~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~ 298 (387)
.....+..+.+- +..+.+|.- +-...+++.|.+.+.. .+-+-.-..+.+.++.+.+ .+-.++++-.-....
T Consensus 112 vF~~ql~lA~~~---~~pv~iH~r-~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~~~---~g~~~S~~~~~~~~~ 184 (255)
T PF01026_consen 112 VFERQLELAKEL---NLPVSIHCR-KAHEELLEILKEYGPPNLRVIFHCFSGSPEEAKKFLD---LGCYFSFSGAITFKN 184 (255)
T ss_dssp HHHHHHHHHHHH---TCEEEEEEE-SHHHHHHHHHHHTTGGTSEEEETT--S-HHHHHHHHH---TTEEEEEEGGGGSTT
T ss_pred HHHHHHHHHHHh---CCcEEEecC-CcHHHHHHHHHhccccceeEEEecCCCCHHHHHHHHh---cCceEEecccccccc
Confidence 344444444332 457888854 5667788888777532 3444432335666666544 133455544322211
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC
Q 016581 299 RIPSTEEIVDRIYEMRTVLETNILWVNPDCGLK 331 (387)
Q Consensus 299 ~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~ 331 (387)
.++.+++++.+|.+++.+-+|+.+.
T Consensus 185 --------~~~~~~~~~~ip~drillETD~P~~ 209 (255)
T PF01026_consen 185 --------SKKVRELIKAIPLDRILLETDAPYL 209 (255)
T ss_dssp --------SHHHHHHHHHS-GGGEEEE-BTTSS
T ss_pred --------cHHHHHHHhcCChhhEEEcCCCCcC
Confidence 3447788899999999999998653
No 105
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=53.79 E-value=25 Score=34.23 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHH
Q 016581 299 RIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALS 343 (387)
Q Consensus 299 ~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~ 343 (387)
.+.|||+|+++|++..+..+.+++.+.+++|+ +.+...+.|+
T Consensus 272 ~vGtpe~v~~~l~~~~~~~G~~~~~~~~~~~~---~~~~~~~~~~ 313 (315)
T cd01096 272 AVGTPEECIEIIQLAIEATGIKNILLSFESMG---SEDEIIASIN 313 (315)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEeccCCC---CHHHHHHHHh
Confidence 47999999999998888889999999998654 5566665554
No 106
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.48 E-value=65 Score=31.15 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=36.0
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++.+..++|+++||+|-.. ++..+.+++.+ +.... +- +.|+.+ +-+..+.+++||+|++=
T Consensus 206 ea~ea~~~gaDiI~LDn~s------~e~l~~av~~~-------~~~~~--le-aSGGI~~~ni~~yA~tGVD~Is~G 266 (281)
T PRK06106 206 QLEEALELGVDAVLLDNMT------PDTLREAVAIV-------AGRAI--TE-ASGRITPETAPAIAASGVDLISVG 266 (281)
T ss_pred HHHHHHHcCCCEEEeCCCC------HHHHHHHHHHh-------CCCce--EE-EECCCCHHHHHHHHhcCCCEEEeC
Confidence 3445567899999999643 33322344433 11112 33 336665 45777889999999864
No 107
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=52.99 E-value=1.9e+02 Score=26.73 Aligned_cols=65 Identities=9% Similarity=-0.062 Sum_probs=39.7
Q ss_pred HHHHHHHHcC-CCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEec
Q 016581 190 EVVSELKAAG-ASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 190 ~~i~~L~~aG-~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~ 267 (387)
+.++++.+.| +++||+-|+.+.. .+..+.+...... .... ++.+.++ +-++.-..+++|++++-.
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~l~~---~~~~~~a~~l~~l-~~~~--gv~liIN-------d~~dlA~~~~adGVHLg~ 95 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYGLDE---ATFQKQAEKLVPV-IQEA--GAAALIA-------GDSRIAGRVKADGLHIEG 95 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCCCCH---HHHHHHHHHHHHH-HHHh--CCEEEEe-------CHHHHHHHhCCCEEEECc
Confidence 4556677889 7999999988643 2333334443333 3322 3455554 225566788999999863
No 108
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=52.03 E-value=2.1e+02 Score=26.91 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=74.8
Q ss_pred CEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch----hHHHHHHc--CCCCEEEEecCCCChhh
Q 016581 201 SWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN----DIIHSIID--MDADVITIENSRSNENL 274 (387)
Q Consensus 201 ~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~----~i~~~l~~--l~vD~i~lE~~r~~~e~ 274 (387)
+++-|=|-.|-. ..++..+....-+..+ +.. ++.+.+|..++|=. .+++.+.+ ++-+.+.+|. .+.+.
T Consensus 96 ~VvAiGEiGLe~-~t~~E~evf~~QL~LA-~e~--dvPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvIDH--~N~et 169 (254)
T COG1099 96 DVVAIGEIGLEE-ATDEEKEVFREQLELA-REL--DVPVIVHTPRRNKKEATSKILDILIESGLKPSLVVIDH--VNEET 169 (254)
T ss_pred CeeEeeeccccc-CCHHHHHHHHHHHHHH-HHc--CCcEEEeCCCCcchhHHHHHHHHHHHcCCChhheehhc--ccHHH
Confidence 467777766654 3444444444444333 333 67899999998744 45555543 4566676663 25777
Q ss_pred hHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCC-ChhhHHHHHHHH
Q 016581 275 LSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTR-KYTEVKPALSNM 345 (387)
Q Consensus 275 L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~-~~~~a~~kL~~l 345 (387)
++.+-+ .+-.+++-|-+++- |+++.++-+++ .+++++++|.|||-... +-..++.+|+-.
T Consensus 170 v~~vld---~e~~vGlTvqPgKl----t~~eAveIV~e----y~~~r~ilnSD~~s~~sd~lavprtal~m~ 230 (254)
T COG1099 170 VDEVLD---EEFYVGLTVQPGKL----TVEEAVEIVRE----YGAERIILNSDAGSAASDPLAVPRTALEME 230 (254)
T ss_pred HHHHHh---ccceEEEEecCCcC----CHHHHHHHHHH----hCcceEEEecccccccccchhhhHHHHHHH
Confidence 775433 14456666666543 34444444433 35799999999998754 223444444433
No 109
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=51.72 E-value=2.3e+02 Score=27.21 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhH---HHHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDI---IHSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i---~~~l~~l~vD 261 (387)
+.+++.++.+.+.|++-|.+---.- ...+..+. -.+.++.+++.+..++.|..|+|. +.... .....+.++|
T Consensus 21 ~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eE---r~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDE---YAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHH---HHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 4577778888889999766553111 11233333 344444445544456678888884 66643 4445688999
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+=
T Consensus 97 ~v~~~ 101 (289)
T cd00951 97 GILLL 101 (289)
T ss_pred EEEEC
Confidence 98875
No 110
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=50.91 E-value=1.4e+02 Score=27.52 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=45.2
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhH--HHHHHcCCCCEEEEecC
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDI--IHSIIDMDADVITIENS 268 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i--~~~l~~l~vD~i~lE~~ 268 (387)
.++.+.+.|+++||+=+-.....-... -.+.+..+.+.. ++++.+ + |...+. +..+.++++|.+.+-+.
T Consensus 37 ~a~~~~~~G~~~l~i~dl~~~~~~~~~----~~~~i~~i~~~~--~~~l~v--~-GGi~~~~~~~~~~~~Ga~~v~iGs~ 107 (241)
T PRK13585 37 VAKRWVDAGAETLHLVDLDGAFEGERK----NAEAIEKIIEAV--GVPVQL--G-GGIRSAEDAASLLDLGVDRVILGTA 107 (241)
T ss_pred HHHHHHHcCCCEEEEEechhhhcCCcc----cHHHHHHHHHHc--CCcEEE--c-CCcCCHHHHHHHHHcCCCEEEEChH
Confidence 444455789999999876643311111 122333344444 234444 3 555544 66778899999988733
Q ss_pred C-CChhhhHHhhh
Q 016581 269 R-SNENLLSVFRE 280 (387)
Q Consensus 269 r-~~~e~L~~~~~ 280 (387)
. .+.+.+..+.+
T Consensus 108 ~~~~~~~~~~i~~ 120 (241)
T PRK13585 108 AVENPEIVRELSE 120 (241)
T ss_pred HhhChHHHHHHHH
Confidence 2 24555555544
No 111
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=50.85 E-value=79 Score=32.67 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEEEE
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITI 265 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i~l 265 (387)
|.+.++++.++|++.|.|=|.+=.. .+......+.+++..+ +..+.+|+|--+|- .+...+ .+.++|.+..
T Consensus 156 ~~~~a~~l~~~Gad~I~i~Dt~G~l--~P~~v~~lv~alk~~~---~~pi~~H~Hnt~Gl--A~AN~laAieaGad~vD~ 228 (448)
T PRK12331 156 FVKLAKEMQEMGADSICIKDMAGIL--TPYVAYELVKRIKEAV---TVPLEVHTHATSGI--AEMTYLKAIEAGADIIDT 228 (448)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCC--CHHHHHHHHHHHHHhc---CCeEEEEecCCCCc--HHHHHHHHHHcCCCEEEe
Confidence 4455566778899999999877543 3332223444444433 32456677755664 455555 3668887753
No 112
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=50.84 E-value=76 Score=32.99 Aligned_cols=71 Identities=14% Similarity=0.262 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVIT 264 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i~ 264 (387)
.|.+.++++.++||+.|.|=|.+=.. .+......+.+++.. ++-.+.+|+|--.|- .+...+ .+.++|.+.
T Consensus 154 ~~~~~a~~l~~~Gad~I~i~Dt~G~l--~P~~v~~Lv~~lk~~---~~vpI~~H~Hnt~Gl--A~AN~laAieaGad~vD 226 (467)
T PRK14041 154 YYLEFARELVDMGVDSICIKDMAGLL--TPKRAYELVKALKKK---FGVPVEVHSHCTTGL--ASLAYLAAVEAGADMFD 226 (467)
T ss_pred HHHHHHHHHHHcCCCEEEECCccCCc--CHHHHHHHHHHHHHh---cCCceEEEecCCCCc--HHHHHHHHHHhCCCEEE
Confidence 34555566778899999999977543 332222344444433 333456777766664 455555 366888764
No 113
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=50.67 E-value=2.6e+02 Score=28.46 Aligned_cols=116 Identities=19% Similarity=0.285 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCC-CceEEEEecCCCchhHHHHHHcCCCCEEEEecCC
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQD-TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~-~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r 269 (387)
.++++.+.|+++|++.-|.... ...+.+..+.+..+. .+..-+|+. +.-...++...++++|++++-...
T Consensus 21 ~~~~~~~~Gv~~ie~g~p~~~~--------~~~~~i~~l~~~~~~~~ii~D~kl~-d~g~~~v~~a~~aGAdgV~v~g~~ 91 (430)
T PRK07028 21 IAKEAVAGGADWIEAGTPLIKS--------EGMNAIRTLRKNFPDHTIVADMKTM-DTGAIEVEMAAKAGADIVCILGLA 91 (430)
T ss_pred HHHHHHhcCCcEEEeCCHHHHH--------hhHHHHHHHHHHCCCCEEEEEeeec-cchHHHHHHHHHcCCCEEEEecCC
Confidence 4556677899999985433211 123333333333221 122234444 111235777889999999975322
Q ss_pred CC--h-hhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 016581 270 SN--E-NLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPD 327 (387)
Q Consensus 270 ~~--~-e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPd 327 (387)
.+ . +.++..++ .+..+++|++++.++ .++++.+.+ .+.+.+.+.|.
T Consensus 92 ~~~~~~~~i~~a~~---~G~~~~~g~~s~~t~--------~e~~~~a~~-~GaD~I~~~pg 140 (430)
T PRK07028 92 DDSTIEDAVRAARK---YGVRLMADLINVPDP--------VKRAVELEE-LGVDYINVHVG 140 (430)
T ss_pred ChHHHHHHHHHHHH---cCCEEEEEecCCCCH--------HHHHHHHHh-cCCCEEEEEec
Confidence 21 1 23344444 245667776654431 223444433 46677777763
No 114
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=50.65 E-value=2.6e+02 Score=27.54 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=61.4
Q ss_pred hhHHHHHHcCCCCEEEE--------ecCCC-ChhhhHHhhhccCCCcccccccccCCC----CCCCCHHHHHHHHHHHHh
Q 016581 249 NDIIHSIIDMDADVITI--------ENSRS-NENLLSVFREGVQYDAAIGPGVYDIHS----PRIPSTEEIVDRIYEMRT 315 (387)
Q Consensus 249 ~~i~~~l~~l~vD~i~l--------E~~r~-~~e~L~~~~~~~~~~k~l~lGvvd~~s----~~ve~~e~v~~ri~~a~~ 315 (387)
...++.+.-.+.=++.= +..|+ .-+.++.+.+ .+..|++=.+..-. ....|.+++++-|.-+.+
T Consensus 173 kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~---~gGvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~ 249 (313)
T COG2355 173 KTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAE---TGGVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVE 249 (313)
T ss_pred ccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHh---cCCEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHH
Confidence 34455554444444431 23343 3456777776 24455554444322 256799999999999999
Q ss_pred hcCCCcEEEcCCCCCCCCChh--hHHHHHHHHHHHHHH
Q 016581 316 VLETNILWVNPDCGLKTRKYT--EVKPALSNMVAATKL 351 (387)
Q Consensus 316 ~v~~~~l~isPdCGl~~~~~~--~a~~kL~~lv~~a~~ 351 (387)
.++.+.+.|..|--=.+.+++ +--.||.+|.++...
T Consensus 250 ~~G~dhVglGsDf~g~~~~p~gled~~~l~~l~~~L~~ 287 (313)
T COG2355 250 LVGIDHVGLGSDFDGGTGPPDGLEDVGKLPNLTAALIE 287 (313)
T ss_pred hcCcceeEecccccCCCCCchhhcChhHHHHHHHHHHH
Confidence 999999999988544443322 335566666655443
No 115
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=50.55 E-value=2.4e+02 Score=27.23 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHH---HHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDII---HSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~---~~l~~l~vD 261 (387)
+++++.++.+.+.|++-|.+---.- ...+..+. -.+.++.+.+.+.+++.|..|++ ++....+ ....++++|
T Consensus 28 ~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eE---r~~~~~~~~~~~~~~~pvi~gv~-~~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 28 AAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDE---YSQVVRAAVETTAGRVPVIAGAG-GGTAQAIEYAQAAERAGAD 103 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHH---HHHHHHHHHHHhCCCCcEEEecC-CCHHHHHHHHHHHHHhCCC
Confidence 4677888889999999777653211 11233333 34444444444454567888888 4666443 444688999
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+=
T Consensus 104 av~~~ 108 (303)
T PRK03620 104 GILLL 108 (303)
T ss_pred EEEEC
Confidence 98765
No 116
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=50.43 E-value=1.7e+02 Score=30.46 Aligned_cols=136 Identities=15% Similarity=0.195 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHH----------------HHHHHHHHHHHcCCCC--CceEEEEecCCCch
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKL----------------QAFIHSFRITNCGIQD--TTQIHTHMCYSNFN 249 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~----------------~~a~~~~~~~~~~~~~--~~~v~lH~C~gn~~ 249 (387)
-.+..+.|+..|+++|.+-.|..+..-.+... ++-.+.++.+.+.+.. ...|++.+..+++.
T Consensus 81 K~eiar~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~g~~~~I~~l~rc~~~di~~tvEAl~~aKr~~Vh~~~aTSd~~ 160 (560)
T KOG2367|consen 81 KLEIARQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTLGYVPVICTLIRCHMDDIERTVEALKYAKRPRVHVFIATSDIH 160 (560)
T ss_pred HHHHHHHHHhcCcCEEEecCcccCcchHHHHHHHHHhCCCCceEEEeeccchHHHHHHHHHhhccCcceEEEEecccHHH
Confidence 34556778889999999999997753111111 1222333333332221 23577776655433
Q ss_pred -----------------hHHHHHHcCCCCEEEEe-----cCCCCh----hhhHHhhhccCCCcccccccccCCCCCCCCH
Q 016581 250 -----------------DIIHSIIDMDADVITIE-----NSRSNE----NLLSVFREGVQYDAAIGPGVYDIHSPRIPST 303 (387)
Q Consensus 250 -----------------~i~~~l~~l~vD~i~lE-----~~r~~~----e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~ 303 (387)
.......+++. +.+| +.|++. +.++.+.+ - + .-.+|+-| +-.+-+|
T Consensus 161 rey~~~kskeevi~~Ave~ikfvkslg~--~~ieFSpEd~~rse~~fl~eI~~aV~K-a--g-~~tvnipd--TVgia~P 232 (560)
T KOG2367|consen 161 REYKLKKSKEEVIESAVEVIKFVKSLGK--WDIEFSPEDFGRSELEFLLEILGAVIK-A--G-VTTVNIPD--TVGIATP 232 (560)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccc--ceEEECccccccCcHHHHHHHHHHHHH-h--C-CccccCcc--eecccCh
Confidence 12222334442 4444 345543 33444443 1 1 11133333 3457889
Q ss_pred HHHHHHHHHHHhhcC-CCcEEEcCCCCCC
Q 016581 304 EEIVDRIYEMRTVLE-TNILWVNPDCGLK 331 (387)
Q Consensus 304 e~v~~ri~~a~~~v~-~~~l~isPdCGl~ 331 (387)
.+..+.|+-....+| .++++|+.-|-=.
T Consensus 233 ~~y~dLI~y~~tn~~~~e~v~Is~HcHND 261 (560)
T KOG2367|consen 233 NEYGDLIEYLKTNTPGREKVCISTHCHND 261 (560)
T ss_pred HHHHHHHHHHHccCCCceeEEEEEeecCC
Confidence 999999999888774 7899999777544
No 117
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=50.13 E-value=1.9e+02 Score=25.87 Aligned_cols=115 Identities=10% Similarity=0.170 Sum_probs=61.3
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCC-CCceEEEEecCCCchh-HHHHHHcCCCCEEEEecC
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQ-DTTQIHTHMCYSNFND-IIHSIIDMDADVITIENS 268 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~-~~~~v~lH~C~gn~~~-i~~~l~~l~vD~i~lE~~ 268 (387)
.++.+ +.|+++|.+-=|.... ...+.++.+.+..+ ..+.+++|+. +-.. .++.+.+.++|.+.+...
T Consensus 17 ~~~~l-~~~v~~iev~~~l~~~--------~g~~~i~~l~~~~~~~~i~~d~k~~--d~~~~~~~~~~~~Gad~i~vh~~ 85 (206)
T TIGR03128 17 LAEKV-ADYVDIIEIGTPLIKN--------EGIEAVKEMKEAFPDRKVLADLKTM--DAGEYEAEQAFAAGADIVTVLGV 85 (206)
T ss_pred HHHHc-ccCeeEEEeCCHHHHH--------hCHHHHHHHHHHCCCCEEEEEEeec--cchHHHHHHHHHcCCCEEEEecc
Confidence 44556 6688888774233221 12333333333222 1345667766 3222 378888999999988743
Q ss_pred CCC---hhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCC
Q 016581 269 RSN---ENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDC 328 (387)
Q Consensus 269 r~~---~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdC 328 (387)
.+. .+.++..++ .+..+++++.+..+ ..+.++.+.+. +++-+.+.|..
T Consensus 86 ~~~~~~~~~i~~~~~---~g~~~~~~~~~~~t--------~~~~~~~~~~~-g~d~v~~~pg~ 136 (206)
T TIGR03128 86 ADDATIKGAVKAAKK---HGKEVQVDLINVKD--------KVKRAKELKEL-GADYIGVHTGL 136 (206)
T ss_pred CCHHHHHHHHHHHHH---cCCEEEEEecCCCC--------hHHHHHHHHHc-CCCEEEEcCCc
Confidence 322 234455555 35566666666433 23334444443 56777777743
No 118
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=49.11 E-value=2.6e+02 Score=27.08 Aligned_cols=149 Identities=12% Similarity=0.166 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCCEEEecCccccc---CCChH----H--HHHHHHHHHHHHcC-CCCCceEEEEe-----cCCCchhH
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVM---DLDSH----K--LQAFIHSFRITNCG-IQDTTQIHTHM-----CYSNFNDI 251 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~---~l~~~----~--~~~a~~~~~~~~~~-~~~~~~v~lH~-----C~gn~~~i 251 (387)
.+.+.++.+.++|+.-|+|++-...- .+... . .++.++-++.+.+. ...++.|.-.. +.| ++..
T Consensus 93 ~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~-~~eA 171 (285)
T TIGR02320 93 HFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKG-MEDA 171 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCC-HHHH
Confidence 44566778888999999997743211 01000 0 12344444444443 22344554442 222 4443
Q ss_pred HH---HHHcCCCCEEEEecCCCChhhhHHhhhccCC---CcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEc
Q 016581 252 IH---SIIDMDADVITIENSRSNENLLSVFREGVQY---DAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVN 325 (387)
Q Consensus 252 ~~---~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~---~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~is 325 (387)
+. ...+.++|+++++....+.+.+..+.+.++. +..+. ++.+..+ ..+.++ +..++..++...
T Consensus 172 i~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~--~~~~~~~-~~~~~e--------L~~lG~~~v~~~ 240 (285)
T TIGR02320 172 LKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV--IVPTSYY-TTPTDE--------FRDAGISVVIYA 240 (285)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE--EecCCCC-CCCHHH--------HHHcCCCEEEEh
Confidence 33 3458899999999422344444443321210 11121 2222222 234444 445566666544
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHh
Q 016581 326 PDCGLKTRKYTEVKPALSNMVAATKLLRTQL 356 (387)
Q Consensus 326 PdCGl~~~~~~~a~~kL~~lv~~a~~~r~~l 356 (387)
+. -.+..++.|.++++.+.+.-
T Consensus 241 ~~---------~~~aa~~a~~~~~~~~~~~g 262 (285)
T TIGR02320 241 NH---------LLRAAYAAMQQVAERILEHG 262 (285)
T ss_pred HH---------HHHHHHHHHHHHHHHHHHcC
Confidence 43 34678888888888877543
No 119
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=48.48 E-value=2.4e+02 Score=26.56 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccC---CChH-HHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMD---LDSH-KLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADV 262 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~---l~~~-~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~ 262 (387)
...+.++.+.+.|+++|=|---+-..+ .+.+ ..+...++++.+.+.. +..+.+-.. +. +++..-++.+++.
T Consensus 25 ~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~--~~piSIDT~--~~-~v~~aaL~~g~~i 99 (258)
T cd00423 25 KALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP--DVPISVDTF--NA-EVAEAALKAGADI 99 (258)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC--CCeEEEeCC--cH-HHHHHHHHhCCCE
Confidence 344556677889999998873221111 1121 2234555555554333 334444322 32 4555555666887
Q ss_pred EEEecCCC-ChhhhHHhhhccCCCcccccccccCCCC-------CCCCHH----HHHHHHHHHHhh-cCCCcEEEcCCCC
Q 016581 263 ITIENSRS-NENLLSVFREGVQYDAAIGPGVYDIHSP-------RIPSTE----EIVDRIYEMRTV-LETNILWVNPDCG 329 (387)
Q Consensus 263 i~lE~~r~-~~e~L~~~~~~~~~~k~l~lGvvd~~s~-------~ve~~e----~v~~ri~~a~~~-v~~~~l~isPdCG 329 (387)
|.==+... +.+.++.+++ + +..+++--.+.... +-...+ .+.++++++.+. ++.+++++-|.-|
T Consensus 100 INdis~~~~~~~~~~l~~~-~--~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g 176 (258)
T cd00423 100 INDVSGGRGDPEMAPLAAE-Y--GAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIG 176 (258)
T ss_pred EEeCCCCCCChHHHHHHHH-c--CCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCC
Confidence 64111111 2344555555 2 33333322222111 122233 334444444432 2378999999988
Q ss_pred CCCCChhhHHHHHHHHH
Q 016581 330 LKTRKYTEVKPALSNMV 346 (387)
Q Consensus 330 l~~~~~~~a~~kL~~lv 346 (387)
|.. +.+.....|+++.
T Consensus 177 ~~k-~~~~~~~~l~~i~ 192 (258)
T cd00423 177 FGK-TEEHNLELLRRLD 192 (258)
T ss_pred ccC-CHHHHHHHHHHHH
Confidence 875 4333334443333
No 120
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=48.21 E-value=2.2e+02 Score=25.98 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=74.7
Q ss_pred HHHHHHcCCCEEEecCcc-ccc--CCCh-HHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEec
Q 016581 192 VSELKAAGASWIQFDEPL-LVM--DLDS-HKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 192 i~~L~~aG~~~IQiDEP~-l~~--~l~~-~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~ 267 (387)
++++.++|+++|=|---+ -.. ..+. +..++.++.+..+.+.. .++.+.+-.. +. .++..-++.+++.+. +.
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~-~~~plSIDT~--~~-~v~~~aL~~g~~~in-d~ 99 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREEN-PDVPLSIDTF--NP-EVAEAALKAGADIIN-DI 99 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHH-TTSEEEEEES--SH-HHHHHHHHHTSSEEE-ET
T ss_pred HHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccC-CCeEEEEECC--CH-HHHHHHHHcCcceEE-ec
Confidence 777889999999887322 111 0122 23446677776666511 1446777666 33 445544455898764 32
Q ss_pred CC-C-ChhhhHHhhhccCCCcccccccccCCC-CCCCCHH---HHHHHHHHHHhh---------cCCCcEEEcCCCCCCC
Q 016581 268 SR-S-NENLLSVFREGVQYDAAIGPGVYDIHS-PRIPSTE---EIVDRIYEMRTV---------LETNILWVNPDCGLKT 332 (387)
Q Consensus 268 ~r-~-~~e~L~~~~~~~~~~k~l~lGvvd~~s-~~ve~~e---~v~~ri~~a~~~---------v~~~~l~isPdCGl~~ 332 (387)
+. . +.+.++.+++ + +..+++=-.+... ..-++++ ++++++.+.++. ++.+++++-|.=|| .
T Consensus 100 ~~~~~~~~~~~l~a~-~--~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf-~ 175 (210)
T PF00809_consen 100 SGFEDDPEMLPLAAE-Y--GAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGF-G 175 (210)
T ss_dssp TTTSSSTTHHHHHHH-H--TSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS-S
T ss_pred ccccccchhhhhhhc-C--CCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCc-C
Confidence 21 1 3445666666 2 2222221112111 1122232 334444443333 45699999999999 4
Q ss_pred CChhhHHHHHHHHHH
Q 016581 333 RKYTEVKPALSNMVA 347 (387)
Q Consensus 333 ~~~~~a~~kL~~lv~ 347 (387)
.+.+....-|+++..
T Consensus 176 ~~~~~~~~~l~~i~~ 190 (210)
T PF00809_consen 176 KDPEQNLELLRNIEE 190 (210)
T ss_dssp TTHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 455555555555443
No 121
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.73 E-value=1.5e+02 Score=29.18 Aligned_cols=88 Identities=7% Similarity=0.166 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEecCcc-------cccC---CCh----HH---HHHHHHHHHHHHcCCCCCceEE
Q 016581 178 LSLLPKILPIYKEVVSELKAAGASWIQFDEPL-------LVMD---LDS----HK---LQAFIHSFRITNCGIQDTTQIH 240 (387)
Q Consensus 178 ~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~-------l~~~---l~~----~~---~~~a~~~~~~~~~~~~~~~~v~ 240 (387)
.+-++.+.+.|.+..+...++|++.|+|.--- |+.. -.+ .. .+...+.++.+-+.+.++..|.
T Consensus 141 ~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~ 220 (338)
T cd04733 141 EEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVG 220 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 34467788888888888999999999997431 1110 001 11 1345666666666666666677
Q ss_pred EEecC-----CCch-----hHHHHHHcCCCCEEEE
Q 016581 241 THMCY-----SNFN-----DIIHSIIDMDADVITI 265 (387)
Q Consensus 241 lH~C~-----gn~~-----~i~~~l~~l~vD~i~l 265 (387)
+-+.. +.++ .+++.|.+.++|.+.+
T Consensus 221 vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev 255 (338)
T cd04733 221 IKLNSADFQRGGFTEEDALEVVEALEEAGVDLVEL 255 (338)
T ss_pred EEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 66641 2222 4566777888888875
No 122
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=47.22 E-value=1.4e+02 Score=28.88 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCEEEecCcccc
Q 016581 190 EVVSELKAAGASWIQFDEPLLV 211 (387)
Q Consensus 190 ~~i~~L~~aG~~~IQiDEP~l~ 211 (387)
+.++.|.++|++.|.+==|..+
T Consensus 27 ~ia~~L~~~Gv~~IE~gfP~~~ 48 (284)
T cd07942 27 RFFKLLVKIGFKEIEVGFPSAS 48 (284)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC
Confidence 3456678889999988755543
No 123
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=47.01 E-value=1.2e+02 Score=28.91 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhH---HHHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDI---IHSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i---~~~l~~l~vD 261 (387)
+++++.++.+.+.|++-|.+---.- ...+..+.+ .+.++.+.+.+++++.|..|++..+..+. .....++++|
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er---~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEH---EELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHH---HHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCC
Confidence 5677888889999999776642111 112333333 33344444444445678899986666644 3445688999
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+=
T Consensus 99 ~v~~~ 103 (292)
T PRK03170 99 GALVV 103 (292)
T ss_pred EEEEC
Confidence 98874
No 124
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=46.86 E-value=2.1e+02 Score=25.46 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecC
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~ 268 (387)
.+.++.+.++|+++||++.= . + ...+.+..+.+..+ ++.++-....- ..-++...++++|.+...
T Consensus 19 ~~~~~~l~~~G~~~vev~~~---~---~----~~~~~i~~l~~~~~-~~~iGag~v~~--~~~~~~a~~~Ga~~i~~p-- 83 (190)
T cd00452 19 LALAEALIEGGIRAIEITLR---T---P----GALEAIRALRKEFP-EALIGAGTVLT--PEQADAAIAAGAQFIVSP-- 83 (190)
T ss_pred HHHHHHHHHCCCCEEEEeCC---C---h----hHHHHHHHHHHHCC-CCEEEEEeCCC--HHHHHHHHHcCCCEEEcC--
Confidence 34456788899999999842 1 1 12334444444444 23333322211 244677788999999754
Q ss_pred CCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcC
Q 016581 269 RSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNP 326 (387)
Q Consensus 269 r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isP 326 (387)
..+.+..+..++ + +..+.+|+ .|++++.+..+. +++-+.+.|
T Consensus 84 ~~~~~~~~~~~~-~--~~~~i~gv--------~t~~e~~~A~~~-----Gad~i~~~p 125 (190)
T cd00452 84 GLDPEVVKAANR-A--GIPLLPGV--------ATPTEIMQALEL-----GADIVKLFP 125 (190)
T ss_pred CCCHHHHHHHHH-c--CCcEECCc--------CCHHHHHHHHHC-----CCCEEEEcC
Confidence 224455544443 1 23344443 377776555443 445555544
No 125
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=46.43 E-value=32 Score=33.51 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHH
Q 016581 297 SPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMV 346 (387)
Q Consensus 297 s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv 346 (387)
...+.|||+|+++|++..+..+.+++++.|+. .+.+...+.++.+.
T Consensus 276 ~~iiGspe~v~~~l~~~~~~~G~d~~~~~~~~----~~~~~~~~s~~l~a 321 (323)
T TIGR03558 276 RSIVGSPETVREQLEALAERTGADELMVTTPI----YDHEARLRSYELLA 321 (323)
T ss_pred CeEEcCHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHHh
Confidence 33578999999999998888899999998872 34455555555443
No 126
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=46.12 E-value=98 Score=31.85 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=37.6
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE 266 (387)
.++.+.++|+++||+-+..+.. .+..+.+..+...+ +.. ++.+.++ +-++.-.++++|++++-
T Consensus 222 ~ve~aL~aGv~~VQLReK~ls~---~el~~la~~l~~l~-~~~--gv~LiIN-------D~~dlAl~~gAdGVHLG 284 (437)
T PRK12290 222 WIERLLPLGINTVQLRIKDPQQ---ADLEQQIIRAIALG-REY--NAQVFIN-------DYWQLAIKHQAYGVHLG 284 (437)
T ss_pred HHHHHHhCCCCEEEEeCCCCCH---HHHHHHHHHHHHHH-HHh--CCEEEEE-------CHHHHHHHcCCCEEEcC
Confidence 4778889999999999988653 23333344443332 222 3355554 22455566777777765
No 127
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=45.55 E-value=1.5e+02 Score=27.96 Aligned_cols=78 Identities=9% Similarity=0.032 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchh---HHHHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFND---IIHSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~---i~~~l~~l~vD 261 (387)
+++++.++.+.+.|++-|-+---.- ...+..+.+ .+.++.+.+.+..++.|..|++..+..+ ......++++|
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er---~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEER---KEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGAD 94 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHH---HHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 4677888888899999766553221 112333333 3444444444444677888888655553 34455688999
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+=
T Consensus 95 ~v~v~ 99 (281)
T cd00408 95 GVLVV 99 (281)
T ss_pred EEEEC
Confidence 99875
No 128
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=45.41 E-value=1.2e+02 Score=29.44 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++++..++|+++||+|. +.++..+.+++.++ .... .+.+-.. |+.+ +-+....++++|+|++=
T Consensus 201 qa~ea~~agaDiI~LDn------~~~e~l~~av~~~~----~~~~--~~~leaS-GGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 201 EAIAALRAQPDVLQLDK------FSPQQATEIAQIAP----SLAP--HCTLSLA-GGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred HHHHHHHcCCCEEEECC------CCHHHHHHHHHHhh----ccCC--CeEEEEE-CCCCHHHHHHHHhcCCCEEEEC
Confidence 44556678999999984 34444334444332 1111 2334444 6554 45677788999999754
No 129
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=45.25 E-value=1.3e+02 Score=31.63 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCCEEEecCcccc
Q 016581 190 EVVSELKAAGASWIQFDEPLLV 211 (387)
Q Consensus 190 ~~i~~L~~aG~~~IQiDEP~l~ 211 (387)
+.++.|.++|++.|.+==|...
T Consensus 110 ~Ia~~L~~~GVd~IEvG~Pa~s 131 (503)
T PLN03228 110 EIARQLAKLRVDIMEVGFPGSS 131 (503)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC
Confidence 3556678889999988666544
No 130
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=45.16 E-value=1.6e+02 Score=29.23 Aligned_cols=89 Identities=10% Similarity=0.131 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecC-----------ccccc--C-CChHH---HHHHHHHHHHHHcCCCCCce
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGASWIQFDE-----------PLLVM--D-LDSHK---LQAFIHSFRITNCGIQDTTQ 238 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDE-----------P~l~~--~-l~~~~---~~~a~~~~~~~~~~~~~~~~ 238 (387)
+.+| ++.+.+.+.+.++...++|.+.|+|.- |.... + ..+.. .+...+.+..+-+.++.+..
T Consensus 128 t~~e-I~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~ 206 (353)
T cd02930 128 SEEE-IEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFI 206 (353)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCce
Confidence 4444 467778888888888999999999964 11100 0 00111 13455555555556665666
Q ss_pred EEEEecC-----CCch-----hHHHHHHcCCCCEEEE
Q 016581 239 IHTHMCY-----SNFN-----DIIHSIIDMDADVITI 265 (387)
Q Consensus 239 v~lH~C~-----gn~~-----~i~~~l~~l~vD~i~l 265 (387)
|.+-+.. |.++ .+.+.|.+.++|.+++
T Consensus 207 v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 207 IIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred EEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 6655542 1121 4566777788888876
No 131
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=44.26 E-value=3.1e+02 Score=26.72 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=40.9
Q ss_pred hhhhHHhhhccCCCcccccccccCC--CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC-CCCC
Q 016581 272 ENLLSVFREGVQYDAAIGPGVYDIH--SPRIPSTEEIVDRIYEMRTVLETNILWVNPD-CGLK 331 (387)
Q Consensus 272 ~e~L~~~~~~~~~~k~l~lGvvd~~--s~~ve~~e~v~~ri~~a~~~v~~~~l~isPd-CGl~ 331 (387)
-+.++.+.+ .+..+++-.++.. ...-.+.+++++-|+-..+.++.+.+.+..| +|..
T Consensus 210 D~~i~~ia~---~GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~ 269 (309)
T cd01301 210 DAQLKAIAE---TGGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGIG 269 (309)
T ss_pred HHHHHHHHH---cCCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECcccCCCC
Confidence 456777766 2445555444432 2246789999999999999999999999998 4443
No 132
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=44.11 E-value=1.4e+02 Score=31.35 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCC--CceEEEEecCCCchhHHHHH--HcCCCCE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQD--TTQIHTHMCYSNFNDIIHSI--IDMDADV 262 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~--~~~v~lH~C~gn~~~i~~~l--~~l~vD~ 262 (387)
.|.+.++.+.++||+.|.|=|.+-.. .+.. +.+.+..+.+.+++ .+.+|+|--.|. .+...+ .+.++|.
T Consensus 156 ~~~~~a~~l~~~Gad~I~IkDtaGll--~P~~---~~~LV~~Lk~~~~~~ipI~~H~Hnt~Gl--A~An~laAieAGad~ 228 (499)
T PRK12330 156 GFVEQAKRLLDMGADSICIKDMAALL--KPQP---AYDIVKGIKEACGEDTRINLHCHSTTGV--TLVSLMKAIEAGVDV 228 (499)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCccCC--CHHH---HHHHHHHHHHhCCCCCeEEEEeCCCCCc--HHHHHHHHHHcCCCE
Confidence 44555666778899999999877543 3322 33334333344432 344555544453 344555 3567777
Q ss_pred EE
Q 016581 263 IT 264 (387)
Q Consensus 263 i~ 264 (387)
+.
T Consensus 229 vD 230 (499)
T PRK12330 229 VD 230 (499)
T ss_pred EE
Confidence 64
No 133
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=43.93 E-value=3.5e+02 Score=27.13 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL 210 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l 210 (387)
++--+++++|.++||++|-+-=|..
T Consensus 42 ~atv~Qi~~L~~aGceiVRvav~~~ 66 (360)
T PRK00366 42 EATVAQIKRLARAGCEIVRVAVPDM 66 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCH
Confidence 3555678899999999999876654
No 134
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=42.93 E-value=2.4e+02 Score=25.04 Aligned_cols=73 Identities=25% Similarity=0.368 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCEEEec---CcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEE
Q 016581 187 IYKEVVSELKAAGASWIQFD---EPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVI 263 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiD---EP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i 263 (387)
.+.+.++.+.++|++.|.+| -|.... +.... ..++.+. +..+ ..+.+|+=.-+....++.+.+.++|++
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~-~~~~~--~~v~~i~---~~~~--~~v~v~lm~~~~~~~~~~~~~~gadgv 83 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPN-LTFGP--PVLEALR---KYTD--LPIDVHLMVENPDRYIEDFAEAGADII 83 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCC-cccCH--HHHHHHH---hcCC--CcEEEEeeeCCHHHHHHHHHHcCCCEE
Confidence 45677888999999999997 222211 11101 1233332 2222 233344432244566777889999997
Q ss_pred EEec
Q 016581 264 TIEN 267 (387)
Q Consensus 264 ~lE~ 267 (387)
.+..
T Consensus 84 ~vh~ 87 (210)
T TIGR01163 84 TVHP 87 (210)
T ss_pred EEcc
Confidence 7763
No 135
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=42.85 E-value=3e+02 Score=26.15 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecC----cccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHH
Q 016581 181 LPKILPIYKEVVSELKAAGASWIQFDE----PLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSII 256 (387)
Q Consensus 181 ~~~la~~~~~~i~~L~~aG~~~IQiDE----P~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~ 256 (387)
++++.+...++++.|.+.|++-|.|.. |.... .+++...........+.+.+ .+++++.+=+.+-..-+..-.
T Consensus 24 ~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~-~~~etvaaM~~i~~~v~~~~--~~p~GVnvL~nd~~aalaiA~ 100 (254)
T PF03437_consen 24 MEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKR-VGPETVAAMARIAREVRREV--SVPVGVNVLRNDPKAALAIAA 100 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCC-CCHHHHHHHHHHHHHHHHhC--CCCEEeeeecCCCHHHHHHHH
Confidence 567777888999999999999777653 66544 44433211122222222233 345666555422222233334
Q ss_pred cCCCCEEEEe-cC---CCC--------hhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 016581 257 DMDADVITIE-NS---RSN--------ENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWV 324 (387)
Q Consensus 257 ~l~vD~i~lE-~~---r~~--------~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~i 324 (387)
..++|.+-++ .. -.+ .+.++.-+. ++.+-.+..+|-.-|+..+.+. .+.+.++.+.+...++=+++
T Consensus 101 A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~-l~a~v~ilaDV~~kh~~~l~~~-~~~~~~~~a~~~~~aDaviV 178 (254)
T PF03437_consen 101 ATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKR-LGADVKILADVHVKHSSPLATR-DLEEAAKDAVERGGADAVIV 178 (254)
T ss_pred HhCCCEEEecCEEceecccCccccccHHHHHHHHHH-cCCCeEEEeeechhhcccCCCC-CHHHHHHHHHHhcCCCEEEE
Confidence 6677777766 11 111 123333232 4555233334433355555442 23444666767777888888
Q ss_pred c-CCCCCCCC
Q 016581 325 N-PDCGLKTR 333 (387)
Q Consensus 325 s-PdCGl~~~ 333 (387)
| +.+|-.+-
T Consensus 179 tG~~TG~~~~ 188 (254)
T PF03437_consen 179 TGKATGEPPD 188 (254)
T ss_pred CCcccCCCCC
Confidence 7 55676653
No 136
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=42.73 E-value=1.7e+02 Score=30.58 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEec
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIEN 267 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~ 267 (387)
.+.++.+.++|+.+||+-++.+.. .+..+.+..... ..... ++.+.+| + -++.-.++++|++++..
T Consensus 310 ~~~l~~~l~~Gv~~vqlR~k~~~~---~~~~~~a~~l~~-~~~~~--~~~liin----d---~~~lA~~~~adGvHl~~ 375 (502)
T PLN02898 310 VDAVRAAIEGGATIVQLREKEAET---REFIEEAKACLA-ICRSY--GVPLLIN----D---RVDVALACDADGVHLGQ 375 (502)
T ss_pred HHHHHHHHHcCCCEEEEccCCCCH---HHHHHHHHHHHH-HHHHh--CCEEEEc----C---hHHHHHhcCCCEEEeCh
Confidence 345677888999999999987543 223333333333 33322 3456565 2 14555678999999863
No 137
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.71 E-value=2e+02 Score=27.78 Aligned_cols=90 Identities=9% Similarity=0.157 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCc--cc-ccCCCh-----------HH---HHHHHHHHHHHHcCCCCCce
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGASWIQFDEP--LL-VMDLDS-----------HK---LQAFIHSFRITNCGIQDTTQ 238 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP--~l-~~~l~~-----------~~---~~~a~~~~~~~~~~~~~~~~ 238 (387)
+.+| ++.+.+.+.+..+.+.++|++-|+|.-- .| .-.+++ .. .+...+.++.+.+.+..+..
T Consensus 132 t~~e-i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~ 210 (327)
T cd02803 132 TKEE-IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFP 210 (327)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCce
Confidence 4444 4678888888888899999999999842 11 000111 01 12345555555555544555
Q ss_pred EEEEecCCC-----c-----hhHHHHHHcCCCCEEEEe
Q 016581 239 IHTHMCYSN-----F-----NDIIHSIIDMDADVITIE 266 (387)
Q Consensus 239 v~lH~C~gn-----~-----~~i~~~l~~l~vD~i~lE 266 (387)
|.+-+..++ + ..+++.+.+.++|.+.+-
T Consensus 211 i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs 248 (327)
T cd02803 211 VGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVS 248 (327)
T ss_pred EEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 555444211 1 145677788899998764
No 138
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=42.62 E-value=2.7e+02 Score=25.44 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecCC
Q 016581 190 EVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSR 269 (387)
Q Consensus 190 ~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r 269 (387)
+.++++.+.|++.||+-. .. +. +.+.+..+.+..+.++.|+...-.- .+-++...+.++|.+..- .
T Consensus 26 ~~~~a~~~gGi~~iEvt~---~~--~~-----~~~~i~~l~~~~~~~~~iGaGTV~~--~~~~~~a~~aGA~fivsp--~ 91 (206)
T PRK09140 26 AHVGALIEAGFRAIEIPL---NS--PD-----PFDSIAALVKALGDRALIGAGTVLS--PEQVDRLADAGGRLIVTP--N 91 (206)
T ss_pred HHHHHHHHCCCCEEEEeC---CC--cc-----HHHHHHHHHHHcCCCcEEeEEecCC--HHHHHHHHHcCCCEEECC--C
Confidence 445678889999999974 11 11 2334555555554444554433321 244677788999998753 2
Q ss_pred CChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHH
Q 016581 270 SNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYE 312 (387)
Q Consensus 270 ~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~ 312 (387)
.+.+..+.... .+..+++| +.|++|+.+..+.
T Consensus 92 ~~~~v~~~~~~---~~~~~~~G--------~~t~~E~~~A~~~ 123 (206)
T PRK09140 92 TDPEVIRRAVA---LGMVVMPG--------VATPTEAFAALRA 123 (206)
T ss_pred CCHHHHHHHHH---CCCcEEcc--------cCCHHHHHHHHHc
Confidence 24555555444 24456666 4456665554443
No 139
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=42.32 E-value=46 Score=32.72 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 016581 298 PRIPSTEEIVDRIYEMRTVLETNILWVNPDCGL 330 (387)
Q Consensus 298 ~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl 330 (387)
..+.|||+|+++|++..+..+.+++.+.+++|.
T Consensus 283 ~lvGtPe~V~e~i~~~~~~~G~d~~~l~~~~~~ 315 (337)
T TIGR03858 283 LYVGSPETVAEKIADTIETLGLDRFMLHYSVGS 315 (337)
T ss_pred eeeeCHHHHHHHHHHHHHHcCCCeEEEEecCCC
Confidence 458999999999999888789999999998763
No 140
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=42.21 E-value=1.4e+02 Score=29.11 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++.+..++|+++||+|-+.. +..+.+++.+ +. .+.+-.. |+.+ .-+....+++||+|++=
T Consensus 220 ea~ea~~~gaDiI~LDn~s~------e~~~~av~~~-------~~--~~~ieaS-GGI~~~ni~~yA~tGVD~Is~g 280 (296)
T PRK09016 220 ELDQALKAGADIIMLDNFTT------EQMREAVKRT-------NG--RALLEVS-GNVTLETLREFAETGVDFISVG 280 (296)
T ss_pred HHHHHHHcCCCEEEeCCCCh------HHHHHHHHhh-------cC--CeEEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 44556678999999997542 2222333322 22 2334444 6654 55777789999999864
No 141
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=42.18 E-value=3.2e+02 Score=26.27 Aligned_cols=77 Identities=9% Similarity=0.044 Sum_probs=47.0
Q ss_pred HHHHHHcCCC-EEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecCCC
Q 016581 192 VSELKAAGAS-WIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 270 (387)
Q Consensus 192 i~~L~~aG~~-~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~ 270 (387)
+++..+.+.. +||+.+-.+.+ ..+ . +........+.+..+. ++|.+|.|-|..-+.+....+.+++.+-++.+..
T Consensus 33 i~aAe~~~~PvIl~~~~~~~~~-~~~-~-~~~~~~~~~~a~~~~~-vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l 108 (282)
T TIGR01859 33 LEAAEEENSPVIIQVSEGAIKY-MGG-Y-KMAVAMVKTLIERMSI-VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL 108 (282)
T ss_pred HHHHHHhCCCEEEEcCcchhhc-cCc-H-HHHHHHHHHHHHHCCC-CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 3344445666 78888766544 121 1 1234555555555521 6799999987543445555678999999996655
Q ss_pred Ch
Q 016581 271 NE 272 (387)
Q Consensus 271 ~~ 272 (387)
++
T Consensus 109 ~~ 110 (282)
T TIGR01859 109 PF 110 (282)
T ss_pred CH
Confidence 43
No 142
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=42.11 E-value=1.2e+02 Score=32.42 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVIT 264 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i~ 264 (387)
.|.+.++++.++||+.|.|=|..=.. .+.. +.+.+..+.+.++..+.+|+|--.|- .+...+ .+.++|.+.
T Consensus 150 ~~~~~~~~~~~~Gad~I~i~Dt~G~~--~P~~---v~~lv~~lk~~~~~pi~~H~Hnt~Gl--a~An~laAveaGa~~vd 222 (582)
T TIGR01108 150 TYLDLAEELLEMGVDSICIKDMAGIL--TPKA---AYELVSALKKRFGLPVHLHSHATTGM--AEMALLKAIEAGADGID 222 (582)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCc--CHHH---HHHHHHHHHHhCCCceEEEecCCCCc--HHHHHHHHHHhCCCEEE
Confidence 34455566778899999999877543 3322 33333333333333456777766553 445555 356777764
Q ss_pred E
Q 016581 265 I 265 (387)
Q Consensus 265 l 265 (387)
.
T Consensus 223 ~ 223 (582)
T TIGR01108 223 T 223 (582)
T ss_pred e
Confidence 3
No 143
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=42.00 E-value=1.8e+02 Score=29.14 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCC-EEEecCccccc-CCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGAS-WIQFDEPLLVM-DLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN 249 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~-~IQiDEP~l~~-~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~ 249 (387)
+.+++-+.|.--+.+.+=...++|++ .|.=|+|-+.. .++ ... .-.+.++++++.++.. .-++-+|.|++.
T Consensus 176 ~~e~lw~nl~yFL~~v~PvAEe~gV~laiHPDDPP~~~~Glp-Ri~-~~~e~~~~~~~~~~Sp-~nGltfC~Gs~g 248 (351)
T PF03786_consen 176 DEEQLWENLKYFLEAVIPVAEEAGVKLAIHPDDPPWPLFGLP-RIV-STAEDLKRILDLVDSP-ANGLTFCTGSLG 248 (351)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCT-EEEEE--SSSS-BTTB----T-TSHHHHHHHHHCT-ST-TEEEEEECCHHH
T ss_pred CHHHHHHHHHHHHHhhhHHHHHhCCEEEeCCCCCCCccCCCC-ccc-CCHHHHHHHHHhCCCc-cccEEeecCccc
Confidence 67788888887777777778889999 69999998874 122 121 1255667777777653 567889988765
No 144
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.85 E-value=93 Score=30.01 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=34.5
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++++..++|+++||+|.. .++..+.+++.. ++.+.+ .+.|+.+ +-++.+.++++|+|++=
T Consensus 201 ea~eA~~~gaD~I~LD~~------~~e~l~~~v~~~-------~~~i~l---eAsGGIt~~ni~~~a~tGvD~Isvg 261 (277)
T PRK05742 201 ELRQALAAGADIVMLDEL------SLDDMREAVRLT-------AGRAKL---EASGGINESTLRVIAETGVDYISIG 261 (277)
T ss_pred HHHHHHHcCCCEEEECCC------CHHHHHHHHHHh-------CCCCcE---EEECCCCHHHHHHHHHcCCCEEEEC
Confidence 344556789999999832 333322333322 112222 2236554 45677889999999864
No 145
>PRK03906 mannonate dehydratase; Provisional
Probab=41.45 E-value=70 Score=32.36 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCC-EEEecCccccc-CCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCc
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGAS-WIQFDEPLLVM-DLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNF 248 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~-~IQiDEP~l~~-~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~ 248 (387)
+.+++-+.++..+++.+....+.|++ .|--|+|.+.. .++ ... .-.+-+.++++.++.+ .+++++|.|++
T Consensus 204 ~~e~lw~~l~~fL~~v~p~Aee~GV~LaihPdDPp~~~~Gl~-riv-~t~~d~~rll~~v~Sp-~~gl~lDtG~l 275 (385)
T PRK03906 204 DEEKLRENLAYFLKAIIPVAEEVGVKMAIHPDDPPRPIFGLP-RIV-STEEDLQRLLDAVDSP-ANGLTLCTGSL 275 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCccccccccC-cee-CCHHHHHHHHHhcCCC-ceeEEEchhhh
Confidence 67888899999999999888999998 58888776431 111 110 0122233445566543 58899998876
No 146
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=41.43 E-value=1.1e+02 Score=32.78 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVIT 264 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i~ 264 (387)
.|.+.++++.++||+.|.|=|.+=.. .+......+.+++.. ++-.+.+|+|--.|. .+...+ .+.++|.+.
T Consensus 155 ~~~~~ak~l~~~Gad~I~IkDtaG~l--~P~~v~~lv~alk~~---~~ipi~~H~Hnt~Gl--a~an~laAieaGad~iD 227 (596)
T PRK14042 155 NFLELGKKLAEMGCDSIAIKDMAGLL--TPTVTVELYAGLKQA---TGLPVHLHSHSTSGL--ASICHYEAVLAGCNHID 227 (596)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccCC--CHHHHHHHHHHHHhh---cCCEEEEEeCCCCCc--HHHHHHHHHHhCCCEEE
Confidence 34445566777899999999877543 332222334444433 322456666655553 344444 366888765
Q ss_pred E
Q 016581 265 I 265 (387)
Q Consensus 265 l 265 (387)
.
T Consensus 228 ~ 228 (596)
T PRK14042 228 T 228 (596)
T ss_pred e
Confidence 3
No 147
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=41.30 E-value=3.2e+02 Score=25.98 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=56.6
Q ss_pred CceEEEEecCCCchhHHHHHHcCC--CCEEEEe-cCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHH
Q 016581 236 TTQIHTHMCYSNFNDIIHSIIDMD--ADVITIE-NSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYE 312 (387)
Q Consensus 236 ~~~v~lH~C~gn~~~i~~~l~~l~--vD~i~lE-~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~ 312 (387)
+.++.+| |++-.+++++.|.+.+ ..++ +- ++. +.+.++.+-+ + +-.+++|-+-+... +..+++
T Consensus 125 ~lPviIH-~R~A~~d~~~iL~~~~~~~~gi-~HcFsG-s~e~a~~~~d-~--G~yisisG~itfk~--------a~~~~e 190 (256)
T COG0084 125 NLPVIIH-TRDAHEDTLEILKEEGAPVGGV-LHCFSG-SAEEARKLLD-L--GFYISISGIVTFKN--------AEKLRE 190 (256)
T ss_pred CCCEEEE-ccccHHHHHHHHHhcCCCCCEE-EEccCC-CHHHHHHHHH-c--CeEEEECceeecCC--------cHHHHH
Confidence 4578889 4566778888887765 3433 33 322 4666666554 2 44566654444332 778899
Q ss_pred HHhhcCCCcEEEcCCCCCCC
Q 016581 313 MRTVLETNILWVNPDCGLKT 332 (387)
Q Consensus 313 a~~~v~~~~l~isPdCGl~~ 332 (387)
+++.+|.+++.+=+||.+-+
T Consensus 191 v~~~iPldrLL~ETDsPyl~ 210 (256)
T COG0084 191 VARELPLDRLLLETDAPYLA 210 (256)
T ss_pred HHHhCCHhHeEeccCCCCCC
Confidence 99999999999999999874
No 148
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=41.19 E-value=74 Score=31.17 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=36.9
Q ss_pred HHHHHHH------cCCCEEEecCcccccC-C--ChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCC
Q 016581 191 VVSELKA------AGASWIQFDEPLLVMD-L--DSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDA 260 (387)
Q Consensus 191 ~i~~L~~------aG~~~IQiDEP~l~~~-l--~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~v 260 (387)
++.+..+ +|+++||+|...+... + +++..+.+++.+ +.. +.+-.. |+.+ +-+.....++|
T Consensus 215 ea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~-------~~~--~~lEaS-GGIt~~ni~~yA~tGV 284 (308)
T PLN02716 215 EVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI-------NGR--FETEAS-GNVTLDTVHKIGQTGV 284 (308)
T ss_pred HHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh-------CCC--ceEEEE-CCCCHHHHHHHHHcCC
Confidence 4455567 9999999997633221 1 222222233322 211 123333 6654 45667789999
Q ss_pred CEEEEe
Q 016581 261 DVITIE 266 (387)
Q Consensus 261 D~i~lE 266 (387)
|+||+=
T Consensus 285 D~Is~G 290 (308)
T PLN02716 285 TYISSG 290 (308)
T ss_pred CEEEeC
Confidence 999864
No 149
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=40.56 E-value=2.6e+02 Score=28.08 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcc---c-ccCCCh-------H----H---HHHHHHHHHHHHcCCCCCc
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGASWIQFDEPL---L-VMDLDS-------H----K---LQAFIHSFRITNCGIQDTT 237 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~---l-~~~l~~-------~----~---~~~a~~~~~~~~~~~~~~~ 237 (387)
+.+| ++.+.+.|.+..+...++|.+-|+|.--- | .-.|.+ + . .+...+.+..+-+.++.+.
T Consensus 141 t~~e-I~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f 219 (382)
T cd02931 141 TTEE-VETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDF 219 (382)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCc
Confidence 3344 46788888888888999999999998521 2 111111 1 1 1345566655555666666
Q ss_pred eEEEEec
Q 016581 238 QIHTHMC 244 (387)
Q Consensus 238 ~v~lH~C 244 (387)
.|++-++
T Consensus 220 ~v~vri~ 226 (382)
T cd02931 220 PVSLRYS 226 (382)
T ss_pred eEEEEEe
Confidence 7777776
No 150
>PRK14847 hypothetical protein; Provisional
Probab=39.81 E-value=3.9e+02 Score=26.53 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=36.4
Q ss_pred HHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcC--CCCCceEEEEecCCCch---hHHHHHHcCCCCEEEEe
Q 016581 192 VSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCG--IQDTTQIHTHMCYSNFN---DIIHSIIDMDADVITIE 266 (387)
Q Consensus 192 i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~--~~~~~~v~lH~C~gn~~---~i~~~l~~l~vD~i~lE 266 (387)
.+.|.++|++.|.+==|+.+. +. .++++.+.+. ++.+..+ .-.|+..-+ ..++...+++.+.+++-
T Consensus 60 A~~L~~lGVd~IEvG~Pa~s~----~e----~e~ir~I~~~~~~~~~~~i-~~~~r~~~~dId~a~e~~~~~~~~~Vhi~ 130 (333)
T PRK14847 60 FEQLVAVGLKEIEVAFPSASQ----TD----FDFVRKLIDERRIPDDVTI-EALTQSRPDLIARTFEALAGSPRAIVHLY 130 (333)
T ss_pred HHHHHHcCCCEEEeeCCCCCH----HH----HHHHHHHHHhCCCCCCcEE-EEEecCcHHHHHHHHHHhCCCCCCEEEEE
Confidence 345777899999887777543 11 3344444333 2223333 223444322 33444445566777776
Q ss_pred cCCC
Q 016581 267 NSRS 270 (387)
Q Consensus 267 ~~r~ 270 (387)
...+
T Consensus 131 ~p~S 134 (333)
T PRK14847 131 NPIA 134 (333)
T ss_pred ecCC
Confidence 4443
No 151
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=38.94 E-value=1.4e+02 Score=32.09 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVIT 264 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i~ 264 (387)
.|.+.++++.++|++.|.|=|..=.. .+......+.+++.. ++..+.+|+|--.|. .+...| .+.++|.+.
T Consensus 155 ~~~~~a~~l~~~Gad~I~i~Dt~G~~--~P~~~~~lv~~lk~~---~~~pi~~H~Hnt~Gl--a~An~laAv~aGad~vD 227 (592)
T PRK09282 155 KYVELAKELEEMGCDSICIKDMAGLL--TPYAAYELVKALKEE---VDLPVQLHSHCTSGL--APMTYLKAVEAGVDIID 227 (592)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCCc--CHHHHHHHHHHHHHh---CCCeEEEEEcCCCCc--HHHHHHHHHHhCCCEEE
Confidence 45556667778899999999877543 332222334444333 332456777766664 445555 366788764
No 152
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=38.69 E-value=1.1e+02 Score=29.74 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEec
Q 016581 199 GASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMC 244 (387)
Q Consensus 199 G~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C 244 (387)
-.+++.+|||.+..|..... ...++++...+.....+...+|.-
T Consensus 174 ~p~VLfLDEpTvgLDV~aq~--~ir~Flke~n~~~~aTVllTTH~~ 217 (325)
T COG4586 174 PPKVLFLDEPTVGLDVNAQA--NIREFLKEYNEERQATVLLTTHIF 217 (325)
T ss_pred CCcEEEecCCccCcchhHHH--HHHHHHHHHHHhhCceEEEEecch
Confidence 56799999999998765432 234444444444444556677744
No 153
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=37.86 E-value=3.9e+02 Score=26.01 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCCEEEec---CcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCc---hhHHHHHHcCCCC
Q 016581 188 YKEVVSELKAAGASWIQFD---EPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNF---NDIIHSIIDMDAD 261 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiD---EP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~---~~i~~~l~~l~vD 261 (387)
..++++++.+.|++.|.|- -+.+. +...+...+.++.+.+..+ + +.+++|..++ .+.++.+.+.+.|
T Consensus 96 i~~~a~~~~~~GlkevvLTsv~~ddl~----d~g~~~l~~li~~I~~~~p-~--i~Ievl~~d~~g~~e~l~~l~~aG~d 168 (302)
T TIGR00510 96 PAKLAETIKDMGLKYVVITSVDRDDLE----DGGASHLAECIEAIREKLP-N--IKIETLVPDFRGNIAALDILLDAPPD 168 (302)
T ss_pred HHHHHHHHHHCCCCEEEEEeecCCCcc----cccHHHHHHHHHHHHhcCC-C--CEEEEeCCcccCCHHHHHHHHHcCch
Confidence 4567777788899966554 22221 1111235556655544343 2 3456665444 4577788888888
Q ss_pred EEEE--ecC-------CC--Ch----hhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEc
Q 016581 262 VITI--ENS-------RS--NE----NLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVN 325 (387)
Q Consensus 262 ~i~l--E~~-------r~--~~----e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~is 325 (387)
++.. |++ +. .. +.++.+++ ...+-.+.-|++=+. -||.|++.+.++. ++.++.+.+.|.
T Consensus 169 v~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~-~~pgi~~~TgiIVGl---GETeee~~etl~~-Lrelg~d~v~ig 242 (302)
T TIGR00510 169 VYNHNLETVERLTPFVRPGATYRWSLKLLERAKE-YLPNLPTKSGIMVGL---GETNEEIKQTLKD-LRDHGVTMVTLG 242 (302)
T ss_pred hhcccccchHHHHHHhCCCCCHHHHHHHHHHHHH-hCCCCeecceEEEEC---CCCHHHHHHHHHH-HHhcCCCEEEee
Confidence 6653 422 11 12 23333333 100111222222222 5888888877776 455677888765
No 154
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=37.32 E-value=3.1e+02 Score=26.56 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch---hHHHHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN---DIIHSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~---~i~~~l~~l~vD 261 (387)
+++++.++.+.+.|++-|.+---.- ...|..+.+ .+.+..+.+.+...+.|..+++.-|.. .+.....++++|
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr---~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad 101 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEER---KEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGAD 101 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHH---HHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCC
Confidence 5788899999999998776653111 111233333 333444444443345688888844444 345556789999
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+=
T Consensus 102 ~il~v 106 (299)
T COG0329 102 GILVV 106 (299)
T ss_pred EEEEe
Confidence 99866
No 155
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=37.27 E-value=2.4e+02 Score=28.31 Aligned_cols=90 Identities=9% Similarity=0.167 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcc--c-ccCCC-------hHH-------HHHHHHHHHHHHcCCCCCce
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGASWIQFDEPL--L-VMDLD-------SHK-------LQAFIHSFRITNCGIQDTTQ 238 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~--l-~~~l~-------~~~-------~~~a~~~~~~~~~~~~~~~~ 238 (387)
+.+| ++++.+.|.+..+...+||.+.|+|.--- | .-.+. +++ .....+.+..+.+.++.+..
T Consensus 140 t~~e-I~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~ 218 (363)
T COG1902 140 TEEE-IEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFP 218 (363)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCce
Confidence 4444 57788888888888899999999998421 0 00111 111 13566666666667766666
Q ss_pred EEEEecCCCc-----------hhHHHHHHcCC-CCEEEEe
Q 016581 239 IHTHMCYSNF-----------NDIIHSIIDMD-ADVITIE 266 (387)
Q Consensus 239 v~lH~C~gn~-----------~~i~~~l~~l~-vD~i~lE 266 (387)
|++-++..++ ..+++.|.+.+ +|.+++=
T Consensus 219 vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs 258 (363)
T COG1902 219 VGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVS 258 (363)
T ss_pred EEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEee
Confidence 7777774333 25677788888 7888765
No 156
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=36.51 E-value=1.3e+02 Score=28.88 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
++++..++|+++||+|-- ..+..+.+++.+ +..+++ .+-|+.+ +-++.+.+.++|++++=
T Consensus 194 ea~~A~~~gaDyI~ld~~------~~e~l~~~~~~~-------~~~ipi---~AiGGI~~~ni~~~a~~Gvd~Iav~ 254 (268)
T cd01572 194 QLKEALEAGADIIMLDNM------SPEELREAVALL-------KGRVLL---EASGGITLENIRAYAETGVDYISVG 254 (268)
T ss_pred HHHHHHHcCCCEEEECCc------CHHHHHHHHHHc-------CCCCcE---EEECCCCHHHHHHHHHcCCCEEEEE
Confidence 344455789999999842 222222233322 111221 2236554 55777889999999864
No 157
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=35.67 E-value=2.4e+02 Score=26.69 Aligned_cols=78 Identities=6% Similarity=-0.013 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCEEEecCcc-cccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchh---HHHHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPL-LVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFND---IIHSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~-l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~---i~~~l~~l~vD 261 (387)
+++++.++.+.++|++-|-+---+ -...+..+.+ .+.++.+.+.+..++.|..+++..+..+ ......++++|
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er---~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVCGTTGESPTLSDEEH---EAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHH---HHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCC
Confidence 467778888889999976665322 1112333333 3333333343444567888888545553 34455688999
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+=
T Consensus 98 ~v~~~ 102 (284)
T cd00950 98 AALVV 102 (284)
T ss_pred EEEEc
Confidence 88765
No 158
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=35.25 E-value=1.9e+02 Score=30.07 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEEEE
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVITI 265 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i~l 265 (387)
|.+.++.+.++||+.|.|=+.+-.. .+......+.+++. ...-.+.+|+|--.|. .+...+ .+.++|.+..
T Consensus 165 ~~~~a~~l~~~Gad~I~IkDtaG~l--~P~~v~~Lv~alk~---~~~~pi~~H~Hnt~Gl--A~An~laAieAGad~vD~ 237 (468)
T PRK12581 165 YLSLVKELVEMGADSICIKDMAGIL--TPKAAKELVSGIKA---MTNLPLIVHTHATSGI--SQMTYLAAVEAGADRIDT 237 (468)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCc--CHHHHHHHHHHHHh---ccCCeEEEEeCCCCcc--HHHHHHHHHHcCCCEEEe
Confidence 4444555668899999999877543 33322233444433 2222345566644553 344444 3667887653
No 159
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=35.05 E-value=1.7e+02 Score=32.28 Aligned_cols=86 Identities=14% Similarity=0.280 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCc-----------cccc--C-CChHH---HHHHHHHHHHHHcCCCCCceEEEEe
Q 016581 181 LPKILPIYKEVVSELKAAGASWIQFDEP-----------LLVM--D-LDSHK---LQAFIHSFRITNCGIQDTTQIHTHM 243 (387)
Q Consensus 181 ~~~la~~~~~~i~~L~~aG~~~IQiDEP-----------~l~~--~-l~~~~---~~~a~~~~~~~~~~~~~~~~v~lH~ 243 (387)
++.+.+.|.+.++...++|++.|+|.-- ...- + -.+.. .+...+.++.+-+.++.+..|.+-+
T Consensus 546 I~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri 625 (765)
T PRK08255 546 MDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRI 625 (765)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEE
Confidence 5677888888888888999999999843 1100 0 00111 1245555555555555566777766
Q ss_pred cCCCc-------h---hHHHHHHcCCCCEEEEe
Q 016581 244 CYSNF-------N---DIIHSIIDMDADVITIE 266 (387)
Q Consensus 244 C~gn~-------~---~i~~~l~~l~vD~i~lE 266 (387)
...++ + .+++.|.+.++|.+.+-
T Consensus 626 ~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 626 SAHDWVEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred ccccccCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 63111 1 45667778899999875
No 160
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=34.65 E-value=2e+02 Score=27.76 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCC-CCceEEEEecCCCchhHHHHHH--cCCCCEEE
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQ-DTTQIHTHMCYSNFNDIIHSII--DMDADVIT 264 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~-~~~~v~lH~C~gn~~~i~~~l~--~l~vD~i~ 264 (387)
+.+.++.+.++|++.|.|-|..-.. .|. .+.+.++.+.+.++ ..+.+|.|--+|- .+...+. +.++|.+.
T Consensus 157 ~~~~~~~~~~~G~d~i~l~DT~G~~-~P~----~v~~lv~~l~~~~~~~~i~~H~Hn~~Gl--a~AN~laA~~aG~~~id 229 (287)
T PRK05692 157 VADVAERLFALGCYEISLGDTIGVG-TPG----QVRAVLEAVLAEFPAERLAGHFHDTYGQ--ALANIYASLEEGITVFD 229 (287)
T ss_pred HHHHHHHHHHcCCcEEEeccccCcc-CHH----HHHHHHHHHHHhCCCCeEEEEecCCCCc--HHHHHHHHHHhCCCEEE
Confidence 3444555667799999998876543 233 23344444444444 2455666654442 4555553 56777664
No 161
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=34.39 E-value=4.3e+02 Score=26.92 Aligned_cols=175 Identities=15% Similarity=0.153 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCC----CCCceEEEEecCCCch--
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGI----QDTTQIHTHMCYSNFN-- 249 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~----~~~~~v~lH~C~gn~~-- 249 (387)
+..+.+..-+++|...-+-|.+.|...-.=||=.++.++.+.. .+.+.+..+++.+ ..++.+++-+..+.|-
T Consensus 173 sf~ealr~~~ev~h~lk~~l~~~g~~t~vGDEGgfAP~l~~~e--eald~i~~Aie~agy~~g~~i~~alD~Aasefy~~ 250 (423)
T COG0148 173 SFKEALRAGAEVFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNE--EALDILVEAIEEAGYEPGEDIALALDVAASEFYKD 250 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccccCCcccCCCCCccH--HHHHHHHHHHHHhCCCCCcceeeeehhhhhhhccC
Confidence 3456667778888888888887887766778877776665432 3455555554432 2235555554432211
Q ss_pred -------------hHHHHHHcC--CCCEEEEec--CCCChhhhHHhhhccCCCc------------------cccccccc
Q 016581 250 -------------DIIHSIIDM--DADVITIEN--SRSNENLLSVFREGVQYDA------------------AIGPGVYD 294 (387)
Q Consensus 250 -------------~i~~~l~~l--~vD~i~lE~--~r~~~e~L~~~~~~~~~~k------------------~l~lGvvd 294 (387)
..++.+.++ ....+++|+ ...||+-+..+.+.++ +| .+-.|+.+
T Consensus 251 ~~Y~~~~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g-~kvqivGDDLfvTN~~~l~~gi~~g~aN 329 (423)
T COG0148 251 GKYVLEGESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLG-DKVQIVGDDLFVTNPKRLKKGIEKGAAN 329 (423)
T ss_pred CeeeecCcccCHHHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHhhC-CeEEEECCcceecCHHHHHHHHHhccCc
Confidence 345555443 577999994 4447887766654222 11 12223333
Q ss_pred C---CCCCCCCHHHHHHHHHHHHhhc--C-------------CCcEEEcCCCCCC---CCChhhHHHHHHHHHHHHHHHH
Q 016581 295 I---HSPRIPSTEEIVDRIYEMRTVL--E-------------TNILWVNPDCGLK---TRKYTEVKPALSNMVAATKLLR 353 (387)
Q Consensus 295 ~---~s~~ve~~e~v~~ri~~a~~~v--~-------------~~~l~isPdCGl~---~~~~~~a~~kL~~lv~~a~~~r 353 (387)
+ +-+++.|.-+..+.|+-|.+.= + ...+.|+..||+- ..+|.+=.+|+..|.++...+-
T Consensus 330 aiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa~~agqIKTGs~sRseRiaKyNqLlrIEeeLg 409 (423)
T COG0148 330 AILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERVAKYNELLRIEEELG 409 (423)
T ss_pred eEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHHHHHHHhCCCeeecCCCcchhHHHHHHHHHHHHHHhh
Confidence 2 4456777777777777665531 0 1234466677762 3355556677777776655554
No 162
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=34.25 E-value=4.3e+02 Score=25.42 Aligned_cols=129 Identities=11% Similarity=0.091 Sum_probs=70.0
Q ss_pred HHHHHHHcCCC-EEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCC-CchhHHHHHHcCCCCEEEEecC
Q 016581 191 VVSELKAAGAS-WIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYS-NFNDIIHSIIDMDADVITIENS 268 (387)
Q Consensus 191 ~i~~L~~aG~~-~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~g-n~~~i~~~l~~l~vD~i~lE~~ 268 (387)
.+++-.+.++. +||+.+....+ .+. +........+.+.. .++|.+|.--| +++.+... .+++++.+.+|.|
T Consensus 29 vi~AAe~~~sPvIi~~~~~~~~~-~~~---~~~~~~~~~~a~~~--~VPV~lHLDH~~~~~~i~~a-i~~GftSVMiD~S 101 (276)
T cd00947 29 ILEAAEETRSPVILQISEGAIKY-AGL---ELLVAMVKAAAERA--SVPVALHLDHGSSFELIKRA-IRAGFSSVMIDGS 101 (276)
T ss_pred HHHHHHHhCCCEEEEcCcchhhh-CCH---HHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHH-HHhCCCEEEeCCC
Confidence 33444445666 89998876654 222 13344444444444 45688888766 45555544 4779999999976
Q ss_pred CCChh-hhHH---hhh-c--cCCCcccccccccCCC-------CCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 016581 269 RSNEN-LLSV---FRE-G--VQYDAAIGPGVYDIHS-------PRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKT 332 (387)
Q Consensus 269 r~~~e-~L~~---~~~-~--~~~~k~l~lGvvd~~s-------~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~ 332 (387)
..+++ .++. +.+ . .+-.-..=+|-|-... ....+||++.+-+++. +.+ +++++-|-..
T Consensus 102 ~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~T----gvD--~LAvsiGt~H 173 (276)
T cd00947 102 HLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEET----GVD--ALAVAIGTSH 173 (276)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHH----CCC--EEEeccCccc
Confidence 65433 3322 211 1 1111223345553322 1245788877777662 233 5666655543
No 163
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=34.20 E-value=42 Score=20.51 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=19.5
Q ss_pred HHHHHHHHhhC---CCCCHHHHHHHHHH
Q 016581 16 ELKFALESFWD---GKSSAEDLQKVSAD 40 (387)
Q Consensus 16 eL~~a~e~~~~---g~i~~~~l~~~~~~ 40 (387)
|++++.+.|.+ |.||.+||.++..+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 56777777775 66999999988764
No 164
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=34.17 E-value=4.3e+02 Score=25.35 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchh---HHHHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFND---IIHSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~---i~~~l~~l~vD 261 (387)
+++++.++.+.+.|++-|.+---.- ...+..+.+ .+.+..+++.+..++.|..|++ ++... ......++++|
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr---~~v~~~~~~~~~g~~pvi~gv~-~~t~~ai~~a~~a~~~Gad 101 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEY---EQVVEIAVSTAKGKVPVYTGVG-GNTSDAIEIARLAEKAGAD 101 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHH---HHHHHHHHHHhCCCCcEEEecC-ccHHHHHHHHHHHHHhCCC
Confidence 4678888889999999776653111 112333333 3333334444444567888887 45553 34445678999
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+=
T Consensus 102 av~~~ 106 (296)
T TIGR03249 102 GYLLL 106 (296)
T ss_pred EEEEC
Confidence 98765
No 165
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=33.65 E-value=2.9e+02 Score=26.78 Aligned_cols=78 Identities=15% Similarity=0.061 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhH---HHHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDI---IHSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i---~~~l~~l~vD 261 (387)
+.+++.++.+.+.|++-|.+---.= ...|..+. ..+.++.+++.+..++.|..|++.-+..+. .....+.++|
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eE---r~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEE---KQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHH---HHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 4677888889999999776643111 11123333 344444455555556778888874455443 3344678899
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+=
T Consensus 106 ~vlv~ 110 (309)
T cd00952 106 GTMLG 110 (309)
T ss_pred EEEEC
Confidence 88765
No 166
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=33.55 E-value=3.6e+02 Score=26.94 Aligned_cols=27 Identities=15% Similarity=0.501 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecC
Q 016581 181 LPKILPIYKEVVSELKAAGASWIQFDE 207 (387)
Q Consensus 181 ~~~la~~~~~~i~~L~~aG~~~IQiDE 207 (387)
++.+.+.|.+..+...+||++-|+|.-
T Consensus 154 I~~ii~~f~~AA~rA~~AGfDGVEIh~ 180 (362)
T PRK10605 154 IPGIVNDFRQAIANAREAGFDLVELHS 180 (362)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 567888888888999999999999984
No 167
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=33.49 E-value=2e+02 Score=28.62 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=53.4
Q ss_pred hHHHHHHc--CCCCEEEEecCCCC----hhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhc----CC
Q 016581 250 DIIHSIID--MDADVITIENSRSN----ENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVL----ET 319 (387)
Q Consensus 250 ~i~~~l~~--l~vD~i~lE~~r~~----~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v----~~ 319 (387)
+.++.|.+ .++|+|.+|.+..+ .+.++.+++.+| +..|+.|.| -|+|.+.+.+..-++.+ +|
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P-~~~vIaGNV-------~T~e~a~~Li~aGAD~vKVGIGp 182 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWP-DKTICAGNV-------VTGEMVEELILSGADIVKVGIGP 182 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCC-CCcEEEecc-------cCHHHHHHHHHcCCCEEEEcccC
Confidence 34556655 48999999977653 234555665332 356777764 45677777666655543 24
Q ss_pred CcEEEcCC-CCCCCCChhhHHHHHHHHHHHHHHHHH
Q 016581 320 NILWVNPD-CGLKTRKYTEVKPALSNMVAATKLLRT 354 (387)
Q Consensus 320 ~~l~isPd-CGl~~~~~~~a~~kL~~lv~~a~~~r~ 354 (387)
..+|.+.- +|++ ...|.++.+.++..++
T Consensus 183 GSiCtTr~vtGvG-------~PQltAV~~~a~~a~~ 211 (346)
T PRK05096 183 GSVCTTRVKTGVG-------YPQLSAVIECADAAHG 211 (346)
T ss_pred CccccCccccccC-------hhHHHHHHHHHHHHHH
Confidence 44444421 3333 3577777777777664
No 168
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=33.44 E-value=3.7e+02 Score=24.96 Aligned_cols=67 Identities=22% Similarity=0.223 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVIT 264 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~ 264 (387)
...+++++|.++|+++|-+|-..=.. +... ..+. +...+...++.+-=| +++++.+. -.++++|.++
T Consensus 86 ptlkeVd~L~~~Ga~IIA~DaT~R~R--P~~~---~~~~----i~~~k~~~~l~MAD~-St~ee~l~-a~~~G~D~IG 152 (229)
T COG3010 86 PTLKEVDALAEAGADIIAFDATDRPR--PDGD---LEEL----IARIKYPGQLAMADC-STFEEGLN-AHKLGFDIIG 152 (229)
T ss_pred ccHHHHHHHHHCCCcEEEeecccCCC--Ccch---HHHH----HHHhhcCCcEEEecc-CCHHHHHH-HHHcCCcEEe
Confidence 45678899999999999999644322 2211 1112 222332346667777 56654332 2467788775
No 169
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=33.36 E-value=1.7e+02 Score=31.37 Aligned_cols=72 Identities=8% Similarity=0.175 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVIT 264 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i~ 264 (387)
-|.+.++.+.++|++.|.|=|..=.. .+......+..++..+ ++ .+.+|+|--.|. .+...+ .+.++|.+.
T Consensus 156 ~~~~~a~~l~~~Gad~i~i~Dt~G~l--~P~~~~~lv~~lk~~~-~~--pi~~H~Hnt~Gl--A~An~laAieAGa~~vD 228 (593)
T PRK14040 156 TWVDLAKQLEDMGVDSLCIKDMAGLL--KPYAAYELVSRIKKRV-DV--PLHLHCHATTGL--STATLLKAIEAGIDGVD 228 (593)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCc--CHHHHHHHHHHHHHhc-CC--eEEEEECCCCch--HHHHHHHHHHcCCCEEE
Confidence 34455556778899999999877543 3322223444444333 23 456666655553 345555 366788764
Q ss_pred E
Q 016581 265 I 265 (387)
Q Consensus 265 l 265 (387)
.
T Consensus 229 ~ 229 (593)
T PRK14040 229 T 229 (593)
T ss_pred e
Confidence 3
No 170
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=33.16 E-value=5.1e+02 Score=25.94 Aligned_cols=135 Identities=11% Similarity=0.101 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHc-CCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecC
Q 016581 190 EVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNC-GIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENS 268 (387)
Q Consensus 190 ~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~-~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~ 268 (387)
+.++.|.++|++.|.+--|..+. .. .+.++.+.+ +. ...+..+ |+.+. .-++...+++++.+.+=.+
T Consensus 30 ~ia~~L~~~GV~~IE~G~p~~~~----~~----~e~i~~i~~~~~--~~~i~~~-~r~~~-~di~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 30 AIARMLDEIGVDQIEAGFPAVSE----DE----KEAIKAIAKLGL--NASILAL-NRAVK-SDIDASIDCGVDAVHIFIA 97 (378)
T ss_pred HHHHHHHHhCCCEEEEeCCCcCh----HH----HHHHHHHHhcCC--CeEEEEE-cccCH-HHHHHHHhCCcCEEEEEEc
Confidence 45566888899999987666432 11 122333322 33 2344444 55443 3466777889998877643
Q ss_pred CCCh-----------hhhH-------HhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 016581 269 RSNE-----------NLLS-------VFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGL 330 (387)
Q Consensus 269 r~~~-----------e~L~-------~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl 330 (387)
.++. +.++ ..++ .+..+.++.-|... -+++.+.+.++.+.+ .+++++.+.-..|.
T Consensus 98 ~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~---~G~~v~~~~ed~~r---~~~~~l~~~~~~~~~-~Ga~~I~l~DT~G~ 170 (378)
T PRK11858 98 TSDIHIKHKLKKTREEVLERMVEAVEYAKD---HGLYVSFSAEDASR---TDLDFLIEFAKAAEE-AGADRVRFCDTVGI 170 (378)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH---CCCeEEEEeccCCC---CCHHHHHHHHHHHHh-CCCCEEEEeccCCC
Confidence 3332 1222 2232 24456666655532 467888888887654 58899988877776
Q ss_pred CCCChhhHHHHHHHH
Q 016581 331 KTRKYTEVKPALSNM 345 (387)
Q Consensus 331 ~~~~~~~a~~kL~~l 345 (387)
. +|....+-++.+
T Consensus 171 ~--~P~~v~~lv~~l 183 (378)
T PRK11858 171 L--DPFTMYELVKEL 183 (378)
T ss_pred C--CHHHHHHHHHHH
Confidence 5 344444444433
No 171
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=32.74 E-value=2.4e+02 Score=27.13 Aligned_cols=78 Identities=9% Similarity=0.064 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcC-CCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhH---HHHHHcCCC
Q 016581 186 PIYKEVVSELKAAG-ASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDI---IHSIIDMDA 260 (387)
Q Consensus 186 ~~~~~~i~~L~~aG-~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i---~~~l~~l~v 260 (387)
+++++.++.+.+.| ++-|.+---.- ...+..+.+ .+.++.+++.+...+.|..|+...+..+. .....++++
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr---~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Ga 97 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEK---KEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 97 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHH---HHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 46778888899999 98776652111 111333333 33333333333335667777754455533 344467899
Q ss_pred CEEEEe
Q 016581 261 DVITIE 266 (387)
Q Consensus 261 D~i~lE 266 (387)
|++.+=
T Consensus 98 d~v~v~ 103 (290)
T TIGR00683 98 DCLSAV 103 (290)
T ss_pred CEEEEe
Confidence 998875
No 172
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=32.71 E-value=3.1e+02 Score=26.37 Aligned_cols=78 Identities=10% Similarity=-0.001 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchh---HHHHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFND---IIHSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~---i~~~l~~l~vD 261 (387)
+++++.++.+.+.|++-|.+---.- ...|..+ +-.+.++.+++.++.++.|..|++..+..+ ......++++|
T Consensus 21 ~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~---Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 21 EALRELIEFQIEGGSHAISVGGTSGEPGSLTLE---ERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHH---HHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 4566777888889998766553111 0112222 334555555555555678888888545543 33444678999
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+-
T Consensus 98 ~v~v~ 102 (294)
T TIGR02313 98 AAMVI 102 (294)
T ss_pred EEEEc
Confidence 98876
No 173
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=32.16 E-value=3.2e+02 Score=26.04 Aligned_cols=78 Identities=8% Similarity=-0.029 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhH---HHHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDI---IHSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i---~~~l~~l~vD 261 (387)
+.++..++.+.+.|++-|.+---.- ...+..+.+ .+.++.+.+.+...+.|..|++..+.++. .....++++|
T Consensus 19 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er---~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad 95 (285)
T TIGR00674 19 AALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEH---KKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGAD 95 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHH---HHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCC
Confidence 4677778888899999666532111 112333333 33344444434445678888875555543 3444678899
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+=
T Consensus 96 ~v~v~ 100 (285)
T TIGR00674 96 GFLVV 100 (285)
T ss_pred EEEEc
Confidence 88765
No 174
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=32.14 E-value=4.7e+02 Score=25.23 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCEEEecCcccccC---CChH-HHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEE
Q 016581 190 EVVSELKAAGASWIQFDEPLLVMD---LDSH-KLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (387)
Q Consensus 190 ~~i~~L~~aG~~~IQiDEP~l~~~---l~~~-~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~l 265 (387)
+.+..+.+.|+++|=|--.+-..+ ++.+ ..+...+.+..+.+.. +..|.+-... ..++..-.+.++|.|.=
T Consensus 42 ~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~--~~~ISIDT~~---~~va~~AL~~GadiIND 116 (282)
T PRK11613 42 KHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF--EVWISVDTSK---PEVIRESAKAGAHIIND 116 (282)
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCeEEEECCC---HHHHHHHHHcCCCEEEE
Confidence 345667788999998884222111 2222 2334666666555443 3456666552 25666666779998840
Q ss_pred ecCCCChhhhHHhhhccCCCccccccccc--CCCC----CCCC-HH----HHHHHHHHHHhh-cCCCcEEEcCCCCCCCC
Q 016581 266 ENSRSNENLLSVFREGVQYDAAIGPGVYD--IHSP----RIPS-TE----EIVDRIYEMRTV-LETNILWVNPDCGLKTR 333 (387)
Q Consensus 266 E~~r~~~e~L~~~~~~~~~~k~l~lGvvd--~~s~----~ve~-~e----~v~~ri~~a~~~-v~~~~l~isPdCGl~~~ 333 (387)
=..-.+.+.++.+++ + +..+++--.. +.+. .-++ .+ ...++++.+.+. ++.+++++-|.=||+-
T Consensus 117 I~g~~d~~~~~~~a~-~--~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k- 192 (282)
T PRK11613 117 IRSLSEPGALEAAAE-T--GLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGK- 192 (282)
T ss_pred CCCCCCHHHHHHHHH-c--CCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCC-
Confidence 011113344555555 2 2222221111 1111 1112 22 334444444333 3457999999777754
Q ss_pred ChhhHHHHHHHH
Q 016581 334 KYTEVKPALSNM 345 (387)
Q Consensus 334 ~~~~a~~kL~~l 345 (387)
+.+....-|+++
T Consensus 193 ~~~~n~~ll~~l 204 (282)
T PRK11613 193 NLSHNYQLLARL 204 (282)
T ss_pred CHHHHHHHHHHH
Confidence 333444444444
No 175
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=32.14 E-value=2.3e+02 Score=26.62 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCC-CceEEEEecCCCchhHHHHHH--cCCCCEE
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQD-TTQIHTHMCYSNFNDIIHSII--DMDADVI 263 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~-~~~v~lH~C~gn~~~i~~~l~--~l~vD~i 263 (387)
+.+.++.+.++|++.|.|-+..=.. .|. ...+.++.+.+.++. .+.+|.|--+|- .+...+. +.+++.+
T Consensus 143 ~~~~~~~~~~~G~d~i~l~DT~G~~--~P~---~v~~lv~~l~~~~~~~~l~~H~Hn~~Gl--A~AN~laAi~aGa~~v 214 (263)
T cd07943 143 LAEQAKLMESYGADCVYVTDSAGAM--LPD---DVRERVRALREALDPTPVGFHGHNNLGL--AVANSLAAVEAGATRI 214 (263)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCc--CHH---HHHHHHHHHHHhCCCceEEEEecCCcch--HHHHHHHHHHhCCCEE
Confidence 4455566778899999998866543 332 233444444444443 456666655542 3444443 4577765
No 176
>PRK08508 biotin synthase; Provisional
Probab=32.14 E-value=4.5e+02 Score=25.01 Aligned_cols=122 Identities=12% Similarity=0.049 Sum_probs=64.5
Q ss_pred HHHHHcCCCEEEe--cCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCc-hhHHHHHHcCCCCEEEEe--c
Q 016581 193 SELKAAGASWIQF--DEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNF-NDIIHSIIDMDADVITIE--N 267 (387)
Q Consensus 193 ~~L~~aG~~~IQi--DEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~-~~i~~~l~~l~vD~i~lE--~ 267 (387)
+...+.|+.-+.+ ..+.+. +...+.+.+.++.+-+..+ .+++|.|.|.. .+.+..|.+.++|.+.+. +
T Consensus 50 ~~a~~~g~~~~~lv~sg~~~~----~~~~e~~~ei~~~ik~~~p---~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt 122 (279)
T PRK08508 50 KMAKANGALGFCLVTSGRGLD----DKKLEYVAEAAKAVKKEVP---GLHLIACNGTASVEQLKELKKAGIFSYNHNLET 122 (279)
T ss_pred HHHHHCCCCEEEEEeccCCCC----cccHHHHHHHHHHHHhhCC---CcEEEecCCCCCHHHHHHHHHcCCCEEcccccc
Confidence 3344568874443 333221 1122345566555543322 35567787754 367888889999998754 3
Q ss_pred CC-------C--Chh-hhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEc
Q 016581 268 SR-------S--NEN-LLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVN 325 (387)
Q Consensus 268 ~r-------~--~~e-~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~is 325 (387)
++ + .++ .++.++.....+-.+.-|++-. .-||.|++++.+... +.++++.+-++
T Consensus 123 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~G---lGEt~ed~~~~l~~l-r~L~~~svpl~ 186 (279)
T PRK08508 123 SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFG---LGESWEDRISFLKSL-ASLSPHSTPIN 186 (279)
T ss_pred hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEe---cCCCHHHHHHHHHHH-HcCCCCEEeeC
Confidence 21 0 122 2333322100122343344433 268999999988776 45676655555
No 177
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=31.94 E-value=6.7e+02 Score=26.95 Aligned_cols=136 Identities=12% Similarity=0.177 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEec------CC-CchhHHHH
Q 016581 182 PKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMC------YS-NFNDIIHS 254 (387)
Q Consensus 182 ~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C------~g-n~~~i~~~ 254 (387)
+++.+.|.+.++.|.++|+++|-+.- . ..-.....++.+.+... .+ ...+.+.+. -| ++..++..
T Consensus 121 ~~~~~~~~~~~~~l~~~gvD~l~~ET----~-~~~~Ea~a~~~a~~~~~-~~--p~~~Sf~~~~~g~l~~G~~~~~~~~~ 192 (612)
T PRK08645 121 EEIRREFREQIDALLEEGVDGLLLET----F-YDLEELLLALEAAREKT-DL--PIIAQVAFHEDGVTQNGTSLEEALKE 192 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEc----c-CCHHHHHHHHHHHHHhC-CC--cEEEEEEECCCCeeCCCCCHHHHHHH
Confidence 67888999999999999999888772 1 11112224455554331 12 223333222 12 24467777
Q ss_pred HHcCCCCEEEEecCC-C-Ch-hhhHHhhhccCCCcccccccccC---------CCCCCCCHHHHHHHHHHHHhhcCCCcE
Q 016581 255 IIDMDADVITIENSR-S-NE-NLLSVFREGVQYDAAIGPGVYDI---------HSPRIPSTEEIVDRIYEMRTVLETNIL 322 (387)
Q Consensus 255 l~~l~vD~i~lE~~r-~-~~-e~L~~~~~~~~~~k~l~lGvvd~---------~s~~ve~~e~v~~ri~~a~~~v~~~~l 322 (387)
+.+.+++++.+--+. + .+ ..++.+.. ...+.+|++.. ...+-.+++..++.+.+..+. +--
T Consensus 193 ~~~~~~~avGiNC~~~p~~~~~~l~~l~~----~~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~~---Ga~ 265 (612)
T PRK08645 193 LVAAGADVVGLNCGLGPYHMLEALERIPI----PENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVEQ---GVR 265 (612)
T ss_pred HHhCCCCEEEecCCCCHHHHHHHHHHHHh----ccCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHHh---CCC
Confidence 878889999988433 2 22 23333332 11234444432 112335788888887776554 555
Q ss_pred EEcCCCCCCC
Q 016581 323 WVNPDCGLKT 332 (387)
Q Consensus 323 ~isPdCGl~~ 332 (387)
+|.=-||-.+
T Consensus 266 iiGGCCgt~P 275 (612)
T PRK08645 266 LIGGCCGTTP 275 (612)
T ss_pred EEeEecCCCH
Confidence 6888898875
No 178
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=31.94 E-value=4.3e+02 Score=24.71 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCC-CCCceEEEEecCCC
Q 016581 180 LLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGI-QDTTQIHTHMCYSN 247 (387)
Q Consensus 180 l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~-~~~~~v~lH~C~gn 247 (387)
..++-.+.+...++...+.||++|-+.-........++..+..++.++.+.+-. +.++.+.++.+.+.
T Consensus 79 ~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~ 147 (279)
T cd00019 79 KREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQ 147 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 345555677777777888899988775433221112333457788888888754 44778888887544
No 179
>PRK03739 2-isopropylmalate synthase; Validated
Probab=31.81 E-value=2.4e+02 Score=29.97 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=49.1
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHc-CC-CCCceE--EEEecCCCchhHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNC-GI-QDTTQI--HTHMCYSNFNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~-~~-~~~~~v--~lH~C~gn~~~i~~~l~~l~vD~i~lE 266 (387)
.++.|.++|++.|.+==|..+. .. .++++.+.+ ++ +++..+ ..+...++.+..++.+...+.+.+++-
T Consensus 57 ia~~L~~~GV~~IE~GfP~~s~----~e----~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~~a~~~~~~~~v~i~ 128 (552)
T PRK03739 57 MFDLLVKIGFKEIEVGFPSASQ----TD----FDFVRELIEEGLIPDDVTIQVLTQAREHLIERTFEALEGAKRAIVHLY 128 (552)
T ss_pred HHHHHHHcCCCEEEEECCCcCh----HH----HHHHHHHHHhcCCCCCCEEEEEeccchhHHHHHHHHhcCCCCCEEEEE
Confidence 4456788899999887565442 11 123333322 22 223332 223223444444555555665567666
Q ss_pred cCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 016581 267 NSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVL 317 (387)
Q Consensus 267 ~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v 317 (387)
.+.++...-..+. -|.+++.+++.+++++.
T Consensus 129 ~~~Sd~h~~~~l~---------------------~t~ee~l~~~~~~v~~a 158 (552)
T PRK03739 129 NSTSPLQRRVVFG---------------------KDRDGIKAIAVDGARLV 158 (552)
T ss_pred EcCCHHHHHHHhC---------------------CCHHHHHHHHHHHHHHH
Confidence 4444333322221 23666666666666654
No 180
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.80 E-value=4.3e+02 Score=24.60 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=37.7
Q ss_pred HHHHHcCCCEEEecCcccccCCChHH-HHHHHH--------HHHHHHcCCCCCceEEEEecCC----CchhHHHHHHcCC
Q 016581 193 SELKAAGASWIQFDEPLLVMDLDSHK-LQAFIH--------SFRITNCGIQDTTQIHTHMCYS----NFNDIIHSIIDMD 259 (387)
Q Consensus 193 ~~L~~aG~~~IQiDEP~l~~~l~~~~-~~~a~~--------~~~~~~~~~~~~~~v~lH~C~g----n~~~i~~~l~~l~ 259 (387)
+.+.++ ++.|.|.=|.--..-++.. .+.... .+..+-+.. +..++++.-+. +....++.+.+.+
T Consensus 25 ~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~--~~Pl~lM~y~n~~~~~~~~~i~~~~~~G 101 (244)
T PRK13125 25 IGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDV--SVPIILMTYLEDYVDSLDNFLNMARDVG 101 (244)
T ss_pred HHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccC--CCCEEEEEecchhhhCHHHHHHHHHHcC
Confidence 345455 8888888666433222222 222222 222222222 34555543222 3445677888999
Q ss_pred CCEEEEe
Q 016581 260 ADVITIE 266 (387)
Q Consensus 260 vD~i~lE 266 (387)
+|++.+-
T Consensus 102 adgvii~ 108 (244)
T PRK13125 102 ADGVLFP 108 (244)
T ss_pred CCEEEEC
Confidence 9999986
No 181
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=31.50 E-value=4.9e+02 Score=25.18 Aligned_cols=129 Identities=9% Similarity=0.118 Sum_probs=68.3
Q ss_pred HHHHHHcCCC-EEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCC-CchhHHHHHHcCCCCEEEEecCC
Q 016581 192 VSELKAAGAS-WIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYS-NFNDIIHSIIDMDADVITIENSR 269 (387)
Q Consensus 192 i~~L~~aG~~-~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~g-n~~~i~~~l~~l~vD~i~lE~~r 269 (387)
+++..+.+.. +||+-+-.+.. ... +......+.+.+.. .++|.+|.-.| +++.+... .+.+++.+.+|.|.
T Consensus 35 i~AAe~~~sPvIl~~~~~~~~~-~g~---~~~~~~~~~~A~~~--~vPV~lHLDH~~~~e~i~~A-i~~GftSVM~DgS~ 107 (283)
T PRK07998 35 LNAIERSGLPNFIQIAPTNAQL-SGY---DYIYEIVKRHADKM--DVPVSLHLDHGKTFEDVKQA-VRAGFTSVMIDGAA 107 (283)
T ss_pred HHHHHHhCCCEEEECcHhHHhh-CCH---HHHHHHHHHHHHHC--CCCEEEECcCCCCHHHHHHH-HHcCCCEEEEeCCC
Confidence 3334445666 78886544433 222 13444444455544 45677888766 55555544 47899999999766
Q ss_pred CCh-hhhHHhh---h-ccCCCc--ccccccccCCC-------CCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCC
Q 016581 270 SNE-NLLSVFR---E-GVQYDA--AIGPGVYDIHS-------PRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTR 333 (387)
Q Consensus 270 ~~~-e~L~~~~---~-~~~~~k--~l~lGvvd~~s-------~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~ 333 (387)
.++ +.++..+ + .+..+- ..-+|.|-... ....+||++.+-+++ .+.+ ++.++.|-..-
T Consensus 108 l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~----TgvD--~LAvaiGt~HG 179 (283)
T PRK07998 108 LPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVER----TGCD--MLAVSIGNVHG 179 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHH----hCcC--eeehhcccccc
Confidence 554 3443322 1 112222 23456663321 124578887555544 3333 55666655443
No 182
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=31.46 E-value=33 Score=29.62 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=23.5
Q ss_pred cccccccccCCCC-CCCCHHHHHHHHHHHHhhc
Q 016581 286 AAIGPGVYDIHSP-RIPSTEEIVDRIYEMRTVL 317 (387)
Q Consensus 286 k~l~lGvvd~~s~-~ve~~e~v~~ri~~a~~~v 317 (387)
..-++||||..+| .+|+-+++++|= +.++.+
T Consensus 127 grgvlGVvDG~sp~gvE~d~d~~~Rr-~~lr~I 158 (162)
T COG1839 127 GRGVLGVVDGYSPLGVETDEDIAERR-ELLRKI 158 (162)
T ss_pred CceEEEEecCCCCcccccHHHHHHHH-HHHHHh
Confidence 4678999999987 699999988873 334444
No 183
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=31.32 E-value=5.8e+02 Score=26.01 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCCEEEecCcccccCCChHHHH---HHHHHHHHHHcCCCCCceEEEEecCCCch-------hHHHHH
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQ---AFIHSFRITNCGIQDTTQIHTHMCYSNFN-------DIIHSI 255 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~---~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-------~i~~~l 255 (387)
+-|++.+-++...|+++|-=||=..+..+. .+.+ ...++++++-+. ......|.| |.+ .-.+..
T Consensus 171 e~~a~~~yE~~~GGvD~iKDDEnl~s~~f~-~~e~R~~~~m~~i~~aeae---TGekk~y~~--NITa~~~EM~rrae~a 244 (429)
T COG1850 171 EEYAELAYELLSGGVDFIKDDENLTSPPFN-RFEERVAKIMEAIDKAEAE---TGEKKMYAV--NITAPCEEMMRRAELA 244 (429)
T ss_pred HHHHHHHHHHHhcCcceecchhhccCcccc-cHHHHHHHHHHHHHHHHHh---hCceEEEEe--eccCCHHHHHHHHHHH
Confidence 345566666778899999988855443222 2321 234444443322 224556777 433 234455
Q ss_pred HcCCCCEEEEecCCCChhhhHHhhh
Q 016581 256 IDMDADVITIENSRSNENLLSVFRE 280 (387)
Q Consensus 256 ~~l~vD~i~lE~~r~~~e~L~~~~~ 280 (387)
.+++.+.+.++....+|..++.+.+
T Consensus 245 ~elG~~~~midi~~~G~~a~q~lre 269 (429)
T COG1850 245 AELGANYVMIDIVVTGFTALQYLRE 269 (429)
T ss_pred HHcCCCEEEEEEEecccHHHHHHHh
Confidence 6889999998844446777777766
No 184
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=31.04 E-value=35 Score=30.10 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=39.0
Q ss_pred CCCCcHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHHHHHHHHHc---CCccccCCCcccchhh
Q 016581 10 RMGPKRELKFALESFWD---GKSSAEDLQKVSADLRSSIWKQMSEA---GIKYIPSNTFSYYDQV 68 (387)
Q Consensus 10 R~g~~~eL~~a~e~~~~---g~i~~~~l~~~~~~~~~~~v~~Q~~a---Gld~itdGef~~~d~v 68 (387)
|..+..+|++|.+-|.+ |.|+..+|+.+....=.+.-....+. +.|.-.||++.+.+++
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~ 151 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFK 151 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHH
Confidence 56667899999999986 66999999998864432222222221 2344458888876654
No 185
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=30.98 E-value=4.7e+02 Score=24.85 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=74.4
Q ss_pred HHHHHHHcCCCEEEecCccccc----CCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCC------------chhHHHH
Q 016581 191 VVSELKAAGASWIQFDEPLLVM----DLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSN------------FNDIIHS 254 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~----~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn------------~~~i~~~ 254 (387)
.++.|.++|+++|.+=-|+... .+..+. ..+++.+... .+ ++.+..+ |++. ....++.
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~-~e~i~~~~~~---~~-~~~l~~~-~r~~~~~~~~~~p~~~~~~di~~ 99 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRFLNEDP-WERLRELRKA---MP-NTPLQML-LRGQNLVGYRHYPDDVVELFVEK 99 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccccCCCH-HHHHHHHHHh---CC-CCceehh-cccccccCccCCCcHHHHHHHHH
Confidence 4667888999999888777200 011111 1334444333 22 2344444 4431 1234555
Q ss_pred HHcCCCCEEEEecCCCChhhh----HHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCC
Q 016581 255 IIDMDADVITIENSRSNENLL----SVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGL 330 (387)
Q Consensus 255 l~~l~vD~i~lE~~r~~~e~L----~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl 330 (387)
..+.++|.+.+-..-++.+.+ +..++ .+..+..++--+.+ ..-+++.+.+.++++.+ .+++++.+.-..|.
T Consensus 100 ~~~~g~~~iri~~~~~~~~~~~~~i~~ak~---~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~~~-~Ga~~i~l~DT~G~ 174 (275)
T cd07937 100 AAKNGIDIFRIFDALNDVRNLEVAIKAVKK---AGKHVEGAICYTGS-PVHTLEYYVKLAKELED-MGADSICIKDMAGL 174 (275)
T ss_pred HHHcCCCEEEEeecCChHHHHHHHHHHHHH---CCCeEEEEEEecCC-CCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCC
Confidence 667889998876544455433 33343 13344443321222 34578888888888765 48899999988888
Q ss_pred CC
Q 016581 331 KT 332 (387)
Q Consensus 331 ~~ 332 (387)
.+
T Consensus 175 ~~ 176 (275)
T cd07937 175 LT 176 (275)
T ss_pred CC
Confidence 75
No 186
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=30.95 E-value=4.2e+02 Score=24.23 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCCEE--EecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecC-CC------chhHHH----HHH
Q 016581 190 EVVSELKAAGASWI--QFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCY-SN------FNDIIH----SII 256 (387)
Q Consensus 190 ~~i~~L~~aG~~~I--QiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~-gn------~~~i~~----~l~ 256 (387)
.++++..++|++.| |+..-.+. ..+..+.+.+..+.+ .+. ++.+.+-.+. |. ....+. ...
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~~~~~~---~~~~~~~i~~v~~~~-~~~--g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~ 153 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVYVGSEE---EREMLEELARVAAEA-HKY--GLPLIAWMYPRGPAVKNEKDPDLIAYAARIGA 153 (235)
T ss_pred cCHHHHHHCCCCEEEEEEecCCch---HHHHHHHHHHHHHHH-HHc--CCCEEEEEeccCCcccCccCHHHHHHHHHHHH
Confidence 35566778899966 88754322 122222333333333 222 2333333332 10 012222 245
Q ss_pred cCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCC
Q 016581 257 DMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPD 327 (387)
Q Consensus 257 ~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPd 327 (387)
++++|.+.+... .+.+.++.+.+. +.+.|+=...+...|+++..+++.++.+ .+.+.+.+..+
T Consensus 154 ~~GaD~Ik~~~~-~~~~~~~~i~~~------~~~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~ 216 (235)
T cd00958 154 ELGADIVKTKYT-GDAESFKEVVEG------CPVPVVIAGGPKKDSEEEFLKMVYDAME-AGAAGVAVGRN 216 (235)
T ss_pred HHCCCEEEecCC-CCHHHHHHHHhc------CCCCEEEeCCCCCCCHHHHHHHHHHHHH-cCCcEEEechh
Confidence 789999988532 256777776651 1122333334445688888888888776 46666655544
No 187
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=30.82 E-value=4.4e+02 Score=25.95 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCC--EEEecCcccccCC-C-h---HHHHHHHHHHHHHHcC---CCCCceEEEEecC
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGAS--WIQFDEPLLVMDL-D-S---HKLQAFIHSFRITNCG---IQDTTQIHTHMCY 245 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~--~IQiDEP~l~~~l-~-~---~~~~~a~~~~~~~~~~---~~~~~~v~lH~C~ 245 (387)
+-+++-.++-+--+..+..+.+.|+. +||+-.-.-...+ + + .+ +.....+|....+ +.+++.|.+|+.-
T Consensus 146 ~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f-~k~a~L~n~g~~avrev~p~ikv~lHla~ 224 (403)
T COG3867 146 NFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNF-DKMAALLNAGIRAVREVSPTIKVALHLAE 224 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcCh-HHHHHHHHHHhhhhhhcCCCceEEEEecC
Confidence 34555566666667788889999987 8999743222212 1 1 12 2234455544333 4457889999996
Q ss_pred CC----chhHHHHHHc--CCCCEEEEe
Q 016581 246 SN----FNDIIHSIID--MDADVITIE 266 (387)
Q Consensus 246 gn----~~~i~~~l~~--l~vD~i~lE 266 (387)
|. |+-+++.|-+ .++|+|.+-
T Consensus 225 g~~n~~y~~~fd~ltk~nvdfDVig~S 251 (403)
T COG3867 225 GENNSLYRWIFDELTKRNVDFDVIGSS 251 (403)
T ss_pred CCCCchhhHHHHHHHHcCCCceEEeee
Confidence 53 5567888854 467777654
No 188
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=30.77 E-value=5e+02 Score=25.12 Aligned_cols=129 Identities=6% Similarity=-0.014 Sum_probs=69.7
Q ss_pred HHHHHHHcCCC-EEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCC-CchhHHHHHHcCCCCEEEEecC
Q 016581 191 VVSELKAAGAS-WIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYS-NFNDIIHSIIDMDADVITIENS 268 (387)
Q Consensus 191 ~i~~L~~aG~~-~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~g-n~~~i~~~l~~l~vD~i~lE~~ 268 (387)
.+++-.+.+.. +||+-+..+.+ ...+ ......+.+.+.. .++|.+|+--| +++.+... .+.+++-+-+|.|
T Consensus 34 vi~AAee~~sPvIlq~s~~~~~~-~~~~---~~~~~~~~~a~~~--~VPValHLDHg~~~e~i~~a-i~~GFtSVM~DgS 106 (286)
T PRK12738 34 ILEVCSEMRSPVILAGTPGTFKH-IALE---EIYALCSAYSTTY--NMPLALHLDHHESLDDIRRK-VHAGVRSAMIDGS 106 (286)
T ss_pred HHHHHHHHCCCEEEEcCcchhhh-CCHH---HHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHH-HHcCCCeEeecCC
Confidence 33444455666 79988877654 2222 2344455455544 45788888766 55544444 4779999999976
Q ss_pred CCChh-hhHH---hhh-c--cCCCcccccccccCCC---------CCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 016581 269 RSNEN-LLSV---FRE-G--VQYDAAIGPGVYDIHS---------PRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKT 332 (387)
Q Consensus 269 r~~~e-~L~~---~~~-~--~~~~k~l~lGvvd~~s---------~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~ 332 (387)
..+++ .++. +.+ . ++-.-.-=+|.|-... ...-+||+.++-+++- +-.+++++.|-.+
T Consensus 107 ~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~T------gvD~LAvaiGt~H 180 (286)
T PRK12738 107 HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELT------GVDSLAVAIGTAH 180 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHh------CCCEEEeccCccc
Confidence 65543 3322 211 1 1111122234442211 1245788877776653 3336666666554
No 189
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=30.64 E-value=3.1e+02 Score=26.06 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHH---HHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDII---HSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~---~~l~~l~vD 261 (387)
+++.+.++.+.+.|++-|.+--..- ...+..+. -.+.++.+++.++.++.|..++...+....+ ....++++|
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~E---r~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad 98 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEE---RKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGAD 98 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHH---HHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHH---HHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCce
Confidence 5778888889999999776653221 11133333 3344444444444466787877654555444 445688999
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+=
T Consensus 99 ~v~v~ 103 (289)
T PF00701_consen 99 AVLVI 103 (289)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98765
No 190
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=29.95 E-value=5.3e+02 Score=25.42 Aligned_cols=87 Identities=7% Similarity=0.071 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEecCcc---cccCCCh-------H----H---HHHHHHHHHHHHcCCCCCceEEE
Q 016581 179 SLLPKILPIYKEVVSELKAAGASWIQFDEPL---LVMDLDS-------H----K---LQAFIHSFRITNCGIQDTTQIHT 241 (387)
Q Consensus 179 ~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~---l~~~l~~-------~----~---~~~a~~~~~~~~~~~~~~~~v~l 241 (387)
+-++.+.+.+.+..+.+.++|.+.|+|.--- +.-.+++ + . .+...+.+..+-+.++.+ .|++
T Consensus 145 ~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d-~v~v 223 (338)
T cd02933 145 EEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD-RVGI 223 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-ceEE
Confidence 3356888888899999999999999998422 1111111 1 1 123444444444444434 3666
Q ss_pred EecCC---------C-ch---hHHHHHHcCCCCEEEEe
Q 016581 242 HMCYS---------N-FN---DIIHSIIDMDADVITIE 266 (387)
Q Consensus 242 H~C~g---------n-~~---~i~~~l~~l~vD~i~lE 266 (387)
-+... + .+ .+.+.|.+.++|.+++-
T Consensus 224 Ris~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs 261 (338)
T cd02933 224 RLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLV 261 (338)
T ss_pred EECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 66521 1 11 45666777789999874
No 191
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.81 E-value=2e+02 Score=29.41 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEE
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITI 265 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~l 265 (387)
..+.+++|.++|+++|.||--. -.+ +...+.+..+-+..| ++.+....| .+. .....+.++++|.+.+
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~----g~~---~~~~~~v~~ik~~~p-~~~vi~g~V-~T~-e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAH----GHS---TRIIELVKKIKTKYP-NLDLIAGNI-VTK-EAALDLISVGADCLKV 221 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCC----CCC---hhHHHHHHHHHhhCC-CCcEEEEec-CCH-HHHHHHHHcCCCEEEE
Confidence 4578899999999999998422 112 124455555555554 345666656 333 3355667889999864
No 192
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=29.76 E-value=5.8e+02 Score=25.54 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCCEEEecCcccccCC-ChHH-HHHHHHHHHHHHcCCCCCceEEEEecCCCchhH---HHHHHcCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLLVMDL-DSHK-LQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDI---IHSIIDMDA 260 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l~~~l-~~~~-~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i---~~~l~~l~v 260 (387)
+.+++.+..+.+.|++.|..||..-.... +-+. .+.+.++.+.+-+.-.....+...++ ++..++ .+...+.++
T Consensus 146 ~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit-~~~~e~i~~a~~a~~~Ga 224 (367)
T cd08205 146 EELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNIT-GDPDELRRRADRAVEAGA 224 (367)
T ss_pred HHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC-CCHHHHHHHHHHHHHcCC
Confidence 35556677788899999999987543322 2222 23445555554432111223344444 344433 344568899
Q ss_pred CEEEEecCCCChhhhHHhhh
Q 016581 261 DVITIENSRSNENLLSVFRE 280 (387)
Q Consensus 261 D~i~lE~~r~~~e~L~~~~~ 280 (387)
|++.+......+..++.+.+
T Consensus 225 d~vmv~~~~~g~~~~~~l~~ 244 (367)
T cd08205 225 NALLINPNLVGLDALRALAE 244 (367)
T ss_pred CEEEEecccccccHHHHHHh
Confidence 99998843333444444433
No 193
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=29.58 E-value=2.2e+02 Score=27.18 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEE
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITI 265 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~l 265 (387)
++.+..++|+++|++|-... +..+.+++.+ +..+++ ..-|+.+ +-+..+.+.++|++++
T Consensus 190 ea~~A~~~gaDyI~ld~~~~------e~lk~~v~~~-------~~~ipi---~AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 190 EAEEAAEAGADIIMLDNMKP------EEIKEAVQLL-------KGRVLL---EASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred HHHHHHHcCCCEEEECCCCH------HHHHHHHHHh-------cCCCcE---EEECCCCHHHHHHHHHcCCCEEEe
Confidence 34445678999999986332 2222233322 111122 1235554 4577788999999997
No 194
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=29.54 E-value=2.9e+02 Score=25.92 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEE
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVI 263 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i 263 (387)
+.+.++.+.++|++.|.|-+..=.. .|.+. .+.+..+.+..+..+.+|.|--+|- .+...+ .+.+++.+
T Consensus 141 ~~~~~~~~~~~G~~~i~l~DT~G~~-~P~~v----~~lv~~l~~~~~~~l~~H~Hn~~Gl--a~An~laAi~aG~~~v 211 (259)
T cd07939 141 LIEFAEVAQEAGADRLRFADTVGIL-DPFTT----YELIRRLRAATDLPLEFHAHNDLGL--ATANTLAAVRAGATHV 211 (259)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCCC-CHHHH----HHHHHHHHHhcCCeEEEEecCCCCh--HHHHHHHHHHhCCCEE
Confidence 3444455667799999998877554 23322 3333333334333455666644442 334444 25567765
No 195
>KOG3338 consensus Divalent cation tolerance-related protein [Inorganic ion transport and metabolism]
Probab=29.49 E-value=22 Score=30.24 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=27.6
Q ss_pred cccccccCCcceecceeccCcccccCCcccHHHHHHH
Q 016581 108 EMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEA 144 (387)
Q Consensus 108 ~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~a 144 (387)
+++++.+.|+.|-+|++.+- ++.+.+.+++++....
T Consensus 109 ~Lt~fV~~nHpYeVpEVial-pi~~gs~~YLeW~~q~ 144 (153)
T KOG3338|consen 109 PLTKFVRGNHPYEVPEVIAL-PIHLGSRPYLEWMNQC 144 (153)
T ss_pred hHHHHHhcCCCccchhheee-ccccCCcHHHHHHHHh
Confidence 67899999999999999773 4555667788875543
No 196
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=29.28 E-value=2.6e+02 Score=32.61 Aligned_cols=72 Identities=18% Similarity=0.347 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVIT 264 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i~ 264 (387)
-|.+.++.+.++||+.|.|=|.+-.. .+......+.+++..+ ++ .+.+|+|--.|. .+...+ .+.++|.+.
T Consensus 690 y~~~~ak~l~~~Gad~I~ikDt~Gll--~P~~~~~Lv~~lk~~~-~~--pi~~H~Hdt~Gl--a~an~laA~eaGad~vD 762 (1143)
T TIGR01235 690 YYTNLAVELEKAGAHILGIKDMAGLL--KPAAAKLLIKALREKT-DL--PIHFHTHDTSGI--AVASMLAAVEAGVDVVD 762 (1143)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCc--CHHHHHHHHHHHHHhc-CC--eEEEEECCCCCc--HHHHHHHHHHhCCCEEE
Confidence 34455566778899999999977543 3332223455554443 33 456677766664 445555 366888875
Q ss_pred E
Q 016581 265 I 265 (387)
Q Consensus 265 l 265 (387)
.
T Consensus 763 ~ 763 (1143)
T TIGR01235 763 V 763 (1143)
T ss_pred e
Confidence 3
No 197
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.15 E-value=4.2e+02 Score=23.67 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=52.1
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecCCC
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 270 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~ 270 (387)
.++.+.+.|+++||+-+-.... . ......+.. .+ .+.++-....-+ +-++...+.++|+++... .
T Consensus 29 ~~~~~~~~Gv~~vqlr~k~~~~---~----e~~~~~~~~---~~-~~~~g~gtvl~~--d~~~~A~~~gAdgv~~p~--~ 93 (187)
T PRK07455 29 MAEAVAAGGMRLIEITWNSDQP---A----ELISQLREK---LP-ECIIGTGTILTL--EDLEEAIAAGAQFCFTPH--V 93 (187)
T ss_pred HHHHHHHCCCCEEEEeCCCCCH---H----HHHHHHHHh---CC-CcEEeEEEEEcH--HHHHHHHHcCCCEEECCC--C
Confidence 4566788999999998644321 1 112222221 11 122222122112 456666789999997542 2
Q ss_pred ChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 016581 271 NENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVL 317 (387)
Q Consensus 271 ~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v 317 (387)
+.+.++.-+. . +....+| +.|++++.+..+.-.+|+
T Consensus 94 ~~~~~~~~~~-~--~~~~i~G--------~~t~~e~~~A~~~Gadyv 129 (187)
T PRK07455 94 DPELIEAAVA-Q--DIPIIPG--------ALTPTEIVTAWQAGASCV 129 (187)
T ss_pred CHHHHHHHHH-c--CCCEEcC--------cCCHHHHHHHHHCCCCEE
Confidence 3444433322 1 2234455 457778777666555554
No 198
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=28.82 E-value=3.6e+02 Score=22.89 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHH----HHHcCCCCEE
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIH----SIIDMDADVI 263 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~----~l~~l~vD~i 263 (387)
..+.++.+.+.|+..|++..+.....-...... +.+....... +..+..|+...+....+. .+.+.++|.+
T Consensus 14 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 14 PVELAKAAAEAGADAIIVGTRSSDPEEAETDDK---EVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHcCCCCEEEEeeEEECcccCCCccc---cHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHHcCCCEE
Confidence 345566677889999999987765421111100 1122222222 345677776555444443 6678899999
Q ss_pred EEecCCC-----ChhhhHHhhhccCCCcccccccc
Q 016581 264 TIENSRS-----NENLLSVFREGVQYDAAIGPGVY 293 (387)
Q Consensus 264 ~lE~~r~-----~~e~L~~~~~~~~~~k~l~lGvv 293 (387)
.+-.... ..+.++.+++.+ .+..++..+.
T Consensus 89 ~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~ 122 (200)
T cd04722 89 EIHGAVGYLAREDLELIRELREAV-PDVKVVVKLS 122 (200)
T ss_pred EEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEEC
Confidence 8885443 234556665521 1344555543
No 199
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=28.03 E-value=5.8e+02 Score=24.93 Aligned_cols=89 Identities=9% Similarity=0.238 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecC-----------ccccc--C-CChHH---HHHHHHHHHHHHcCCCCCce
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGASWIQFDE-----------PLLVM--D-LDSHK---LQAFIHSFRITNCGIQDTTQ 238 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDE-----------P~l~~--~-l~~~~---~~~a~~~~~~~~~~~~~~~~ 238 (387)
+.+| ++.+.+.|.+.++.+.++|++-|+|.- |.... + ..+.. .+...+.+..+-+.++++..
T Consensus 145 t~~e-I~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~ 223 (336)
T cd02932 145 TREE-IAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKP 223 (336)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCce
Confidence 4444 467888888888888999999999984 22211 0 00111 13455555555555655556
Q ss_pred EEEEecC-----CC--ch---hHHHHHHcCCCCEEEE
Q 016581 239 IHTHMCY-----SN--FN---DIIHSIIDMDADVITI 265 (387)
Q Consensus 239 v~lH~C~-----gn--~~---~i~~~l~~l~vD~i~l 265 (387)
|.+-+.. +. .+ .++..|.+.++|.+.+
T Consensus 224 v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 224 LFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred EEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 6665441 11 11 3556667778888765
No 200
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.55 E-value=4.5e+02 Score=26.29 Aligned_cols=89 Identities=6% Similarity=0.151 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcc---cccCCC-------h----HH---HHHHHHHHHHHHcCCCCCce
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGASWIQFDEPL---LVMDLD-------S----HK---LQAFIHSFRITNCGIQDTTQ 238 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~---l~~~l~-------~----~~---~~~a~~~~~~~~~~~~~~~~ 238 (387)
+.+| ++.+.+.+.+..+...++|.+-|+|.--- +.-.|. + .. .+...+.+..+-+.++++..
T Consensus 135 t~~e-I~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~ 213 (361)
T cd04747 135 TEAD-IDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFP 213 (361)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCe
Confidence 3344 56788888888888899999999999533 000111 1 11 12344444444444554555
Q ss_pred EEEEecC---CCc--------h---hHHHHHHcCCCCEEEE
Q 016581 239 IHTHMCY---SNF--------N---DIIHSIIDMDADVITI 265 (387)
Q Consensus 239 v~lH~C~---gn~--------~---~i~~~l~~l~vD~i~l 265 (387)
|++=+.. .++ . .++..|.+.++|.+++
T Consensus 214 v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 214 IILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHC 254 (361)
T ss_pred EEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 5554441 111 1 3455567778898766
No 201
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=27.34 E-value=80 Score=29.63 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCC-CceEEEEecCCCchhHHHHHHcC
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQD-TTQIHTHMCYSNFNDIIHSIIDM 258 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~-~~~v~lH~C~gn~~~i~~~l~~l 258 (387)
.+.+..++|++.||--|-+-+..-.. -+. ...+.+..+++.+|. ++.+|.|=-||. .+...|..+
T Consensus 170 kVa~V~k~ly~mGCyEiSLGDTIGvG-Tpg----tm~~ML~~Vmk~vPa~~LAVH~HDTYGQ--ALaNiL~sl 235 (316)
T KOG2368|consen 170 KVAEVVKKLYEMGCYEISLGDTIGVG-TPG----TMKRMLDAVMKVVPAEKLAVHCHDTYGQ--ALANILVSL 235 (316)
T ss_pred HHHHHHHHHHhCCcEEEecccccccC-Cch----hHHHHHHHHHHhCCHHHhhhhhhhhHHH--HHHHHHHHH
Confidence 34566788999999888888866443 344 245667777888884 466777766764 555666443
No 202
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=27.27 E-value=2.9e+02 Score=27.59 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCC-CceEEEEecCCCchhHHHHHH--cCCCCEEE
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQD-TTQIHTHMCYSNFNDIIHSII--DMDADVIT 264 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~-~~~v~lH~C~gn~~~i~~~l~--~l~vD~i~ 264 (387)
.+.++.+.++|++.|-|-|..=.. .|. .+.+.++.+.+..+. .+.+|.|--+|- .+...|. +.+++.+.
T Consensus 200 ~~~~~~~~~~Gad~I~l~DT~G~a-~P~----~v~~lv~~l~~~~~~~~i~~H~Hnd~Gl--A~AN~lAA~~aGa~~vd 271 (347)
T PLN02746 200 AYVAKELYDMGCYEISLGDTIGVG-TPG----TVVPMLEAVMAVVPVDKLAVHFHDTYGQ--ALANILVSLQMGISTVD 271 (347)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCc-CHH----HHHHHHHHHHHhCCCCeEEEEECCCCCh--HHHHHHHHHHhCCCEEE
Confidence 344455667799888888766443 222 234444444444542 355666644442 4555553 55677653
No 203
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.21 E-value=3.2e+02 Score=26.04 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEEE
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVIT 264 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i~ 264 (387)
.+.++.+.++|++.|-|=++.=.. .+. ...+.+..+.+.++..+.+|.|--+|- .+...+ .+.+++.+.
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DT~G~~--~P~---~v~~lv~~l~~~~~~~l~~H~Hnd~Gl--A~aN~laA~~aGa~~vd 222 (275)
T cd07937 152 VKLAKELEDMGADSICIKDMAGLL--TPY---AAYELVKALKKEVGLPIHLHTHDTSGL--AVATYLAAAEAGVDIVD 222 (275)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCC--CHH---HHHHHHHHHHHhCCCeEEEEecCCCCh--HHHHHHHHHHhCCCEEE
Confidence 334455677899999999877554 232 233333333344433455666644442 334444 255777664
No 204
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=27.11 E-value=3.6e+02 Score=26.65 Aligned_cols=89 Identities=8% Similarity=0.158 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcc--c-ccCCCh-----------HH---HHHHHHHHHHHHcCCCCCce
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGASWIQFDEPL--L-VMDLDS-----------HK---LQAFIHSFRITNCGIQDTTQ 238 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~--l-~~~l~~-----------~~---~~~a~~~~~~~~~~~~~~~~ 238 (387)
+.+| ++.+.+.|.+.++...++|++.|+|.--- | .-.|.+ .. .+...+.+..+-+.+..+..
T Consensus 132 t~~e-I~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~ 210 (343)
T cd04734 132 EEED-IEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFI 210 (343)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCe
Confidence 3344 46777888888888889999999999520 1 000111 11 13455555555555555555
Q ss_pred EEEEecCCCc-------h---hHHHHHHcCC-CCEEEE
Q 016581 239 IHTHMCYSNF-------N---DIIHSIIDMD-ADVITI 265 (387)
Q Consensus 239 v~lH~C~gn~-------~---~i~~~l~~l~-vD~i~l 265 (387)
|.+=+..-++ + .++..|.+.+ +|.+++
T Consensus 211 v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 211 VGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred EEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 6665553221 1 4556667777 898887
No 205
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.07 E-value=1.9e+02 Score=28.57 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHH--cCCCCEE
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSII--DMDADVI 263 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~--~l~vD~i 263 (387)
+.+.++.+.++|++.|-|-+..=.. .+. .+.+.++.+.+.+++++++++|.= -|+. .+...+. +.+++.+
T Consensus 146 l~~~a~~~~~~Ga~~i~i~DT~G~~-~P~----~v~~~v~~l~~~l~~~i~ig~H~H-nnlGla~ANslaAi~aGa~~i 218 (337)
T PRK08195 146 LAEQAKLMESYGAQCVYVVDSAGAL-LPE----DVRDRVRALRAALKPDTQVGFHGH-NNLGLGVANSLAAVEAGATRI 218 (337)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCCC-CHH----HHHHHHHHHHHhcCCCCeEEEEeC-CCcchHHHHHHHHHHhCCCEE
Confidence 3445666777899999998877554 233 234444444455544556666632 3433 3444443 5677754
No 206
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=27.06 E-value=5.8e+02 Score=24.66 Aligned_cols=127 Identities=10% Similarity=0.041 Sum_probs=68.0
Q ss_pred HHHcCCC-EEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCC-CchhHHHHHHcCCCCEEEEecCCCCh
Q 016581 195 LKAAGAS-WIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYS-NFNDIIHSIIDMDADVITIENSRSNE 272 (387)
Q Consensus 195 L~~aG~~-~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~g-n~~~i~~~l~~l~vD~i~lE~~r~~~ 272 (387)
-.+.+.. +||+.+..+.+..+-+ ......+.+.+....+++|.+|.--| +++.+. ...+++++-+-+|.|..++
T Consensus 38 Ae~~~sPvIiq~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~-~ai~~GftSVM~DgS~lp~ 113 (285)
T PRK07709 38 AEEEKSPVILGVSEGAARHMTGFK---TVVAMVKALIEEMNITVPVAIHLDHGSSFEKCK-EAIDAGFTSVMIDASHHPF 113 (285)
T ss_pred HHHHCCCEEEEcCcchhhhcCCHH---HHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHH-HHHHcCCCEEEEeCCCCCH
Confidence 3444666 8999887665411221 23444555555443235788898766 455444 4457799999999766554
Q ss_pred h-hhHH---hhh-c--cCCCcccccccccCC-------CCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCC
Q 016581 273 N-LLSV---FRE-G--VQYDAAIGPGVYDIH-------SPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLK 331 (387)
Q Consensus 273 e-~L~~---~~~-~--~~~~k~l~lGvvd~~-------s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~ 331 (387)
+ .++. +.+ . .+-.-.-=+|.|-.. .....+||+..+-+++. +.+ +++++.|-.
T Consensus 114 eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~T----gvD--~LAvaiGt~ 180 (285)
T PRK07709 114 EENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEAT----GID--CLAPALGSV 180 (285)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHh----CCC--EEEEeeccc
Confidence 3 3322 211 1 111112234444221 11256888877776653 333 555555544
No 207
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=27.03 E-value=3.8e+02 Score=29.68 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCCEEEecCcccc
Q 016581 190 EVVSELKAAGASWIQFDEPLLV 211 (387)
Q Consensus 190 ~~i~~L~~aG~~~IQiDEP~l~ 211 (387)
+.++++.++|+++||+-++.+.
T Consensus 23 ~~l~~~l~~g~~~iqlR~K~~~ 44 (755)
T PRK09517 23 GIVDSAISGGVSVVQLRDKNAG 44 (755)
T ss_pred HHHHHHHhcCCCEEEEeCCCCC
Confidence 4455666789999999998854
No 208
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.72 E-value=1.7e+02 Score=33.11 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=38.0
Q ss_pred HHHHHHHHHcC--CCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEec
Q 016581 189 KEVVSELKAAG--ASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMC 244 (387)
Q Consensus 189 ~~~i~~L~~aG--~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C 244 (387)
+-.+.++...+ +..+.||||+-. |+++-.+.+++++..+...++ -+.|++|.-
T Consensus 829 rLALs~~~~~~~~l~~l~LDEpf~~--LD~e~l~~l~~~l~~i~~~~~-qiiIISH~e 883 (908)
T COG0419 829 RLALSDLLQGRARLELLFLDEPFGT--LDEERLEKLAEILEELLSDGR-QIIIISHVE 883 (908)
T ss_pred HHHHHHHHhcccCCCeeEeeCCCCC--CCHHHHHHHHHHHHHHHhcCC-eEEEEeChH
Confidence 33344444556 899999999976 567767788999988887743 356788854
No 209
>PRK06801 hypothetical protein; Provisional
Probab=26.54 E-value=4.7e+02 Score=25.29 Aligned_cols=73 Identities=5% Similarity=0.097 Sum_probs=45.8
Q ss_pred HHHHHcCCC-EEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEecCCCC
Q 016581 193 SELKAAGAS-WIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSN 271 (387)
Q Consensus 193 ~~L~~aG~~-~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~ 271 (387)
++-.+.+.. +||+.+....+ ...+ ......+.+.+.. .++|.+|.--|..-+.+..-.+.+++.+-++.+...
T Consensus 36 ~AAe~~~~PvIl~~~~~~~~~-~~~~---~~~~~~~~~a~~~--~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~ 109 (286)
T PRK06801 36 AAAKQERSPFIINIAEVHFKY-ISLE---SLVEAVKFEAARH--DIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLE 109 (286)
T ss_pred HHHHHHCCCEEEEeCcchhhc-CCHH---HHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCC
Confidence 334444666 89998877654 2221 3444555555544 456888888775444555556789999999966554
No 210
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=26.01 E-value=6.8e+02 Score=25.06 Aligned_cols=159 Identities=12% Similarity=0.043 Sum_probs=77.9
Q ss_pred HHHcCCC-EEEecCccccc-C---CCh--H--HH---HHHHHHHHHHHcCCCCCceEEEEecCCCc--hhHHHHHHcC--
Q 016581 195 LKAAGAS-WIQFDEPLLVM-D---LDS--H--KL---QAFIHSFRITNCGIQDTTQIHTHMCYSNF--NDIIHSIIDM-- 258 (387)
Q Consensus 195 L~~aG~~-~IQiDEP~l~~-~---l~~--~--~~---~~a~~~~~~~~~~~~~~~~v~lH~C~gn~--~~i~~~l~~l-- 258 (387)
-.+.... +||+-+....+ . +.. . .. .......+.+.+.. .++|.+|.--|.- -+.+....++
T Consensus 41 Aee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~--~VPValHLDHg~~~~~~~i~~ai~~g~ 118 (350)
T PRK09197 41 AAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHY--GVPVILHTDHCAKKLLPWIDGLLDAGE 118 (350)
T ss_pred HHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHC--CCCEEEECCCCCCcchHHHHHHHHhhH
Confidence 3344556 79998765543 1 111 0 00 01334444444554 4568888876632 1223333343
Q ss_pred ---------CCCEEEEecCCCChh-hhHH---hhh-c--cCCCcccccccccC----C----C---CCCCCHHHHHHHHH
Q 016581 259 ---------DADVITIENSRSNEN-LLSV---FRE-G--VQYDAAIGPGVYDI----H----S---PRIPSTEEIVDRIY 311 (387)
Q Consensus 259 ---------~vD~i~lE~~r~~~e-~L~~---~~~-~--~~~~k~l~lGvvd~----~----s---~~ve~~e~v~~ri~ 311 (387)
+++.+.+|.|..+++ .++. +.+ . .+-.-..=+|.|-. . . ...-+||+..+-++
T Consensus 119 ~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~ 198 (350)
T PRK09197 119 KHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYE 198 (350)
T ss_pred HHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHH
Confidence 489999997665543 3322 211 1 11111222344421 1 0 12467888777776
Q ss_pred HHHhhcCCCcEEEcCCCCCCCCChh--hHHHHHHHHHHHHHHHHHHhC
Q 016581 312 EMRTVLETNILWVNPDCGLKTRKYT--EVKPALSNMVAATKLLRTQLT 357 (387)
Q Consensus 312 ~a~~~v~~~~l~isPdCGl~~~~~~--~a~~kL~~lv~~a~~~r~~l~ 357 (387)
+.- . .-...++++++|-..-.+. .+.-.+..+.+..+.+.+.++
T Consensus 199 ~Tg-v-~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~ 244 (350)
T PRK09197 199 ALG-K-ISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFG 244 (350)
T ss_pred HhC-C-CCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhC
Confidence 531 1 0012467777777654332 233445556666666666655
No 211
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.93 E-value=6.3e+02 Score=24.64 Aligned_cols=117 Identities=12% Similarity=0.128 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEecCCCc----h---hHHHHHHcCCCCEEEEec----CCCChhhhHHhhhccCCCccc
Q 016581 220 QAFIHSFRITNCGIQDTTQIHTHMCYSNF----N---DIIHSIIDMDADVITIEN----SRSNENLLSVFREGVQYDAAI 288 (387)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~v~lH~C~gn~----~---~i~~~l~~l~vD~i~lE~----~r~~~e~L~~~~~~~~~~k~l 288 (387)
++.+++.+++-+. ++.|.+|+--|=- . .-+..+..+++|+|-|-. .+..++ +...+ +
T Consensus 168 ~~y~dav~r~rkr---gIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~--k~Y~~----G--- 235 (312)
T COG1242 168 ACYVDAVKRLRKR---GIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPME--KMYEK----G--- 235 (312)
T ss_pred HHHHHHHHHHHHc---CCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHH--HHHHc----C---
Confidence 3567777666443 5678889886521 1 234456788999987661 111111 11222 1
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEE--EcCCCCCCC-CChhhHHHHHHHHHHHHHHHHHHh
Q 016581 289 GPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILW--VNPDCGLKT-RKYTEVKPALSNMVAATKLLRTQL 356 (387)
Q Consensus 289 ~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~--isPdCGl~~-~~~~~a~~kL~~lv~~a~~~r~~l 356 (387)
.-..=|.|+=+..+-.+++.+||+.++ |+-|..=.+ ..|.|-..|.+.|.+.-+.+.++=
T Consensus 236 --------~l~~ls~eeYv~~~~d~le~lpp~vviHRitgd~pr~~li~P~W~~~kw~vln~I~~eL~rrg 298 (312)
T COG1242 236 --------RLKFLSLEEYVELVCDQLEHLPPEVVIHRITGDAPRDTLIAPLWSLNKWEVLNAIDKELERRG 298 (312)
T ss_pred --------CceeccHHHHHHHHHHHHHhCCcceEEEEecCCCCccceecchhhhHHHHHHHHHHHHHHhcC
Confidence 123457788899999999999999886 777744443 266788999999988877776654
No 212
>PLN02417 dihydrodipicolinate synthase
Probab=25.85 E-value=4.9e+02 Score=24.79 Aligned_cols=78 Identities=9% Similarity=-0.039 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCCEEEecCcccc-cCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHH---HHHHcCCCC
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLLV-MDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDII---HSIIDMDAD 261 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l~-~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~---~~l~~l~vD 261 (387)
+++.+.++.+.+.|++-|.+--..-- ..+..+ +-.+.++.+++.++..+.|..|+..-+..+.+ ....++++|
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~---Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gad 98 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWD---EHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMH 98 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcchhhCCHH---HHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCC
Confidence 46778888889999997766532211 112222 23444444454444456777777643454433 344688999
Q ss_pred EEEEe
Q 016581 262 VITIE 266 (387)
Q Consensus 262 ~i~lE 266 (387)
++.+-
T Consensus 99 av~~~ 103 (280)
T PLN02417 99 AALHI 103 (280)
T ss_pred EEEEc
Confidence 98876
No 213
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=25.63 E-value=4e+02 Score=26.34 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCc
Q 016581 176 SVLSLLPKILPIYKEVVSELKAAGASWIQFDEP 208 (387)
Q Consensus 176 ~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP 208 (387)
+.+| ++.+.+.+.+..+.+.++|++.|+|.--
T Consensus 133 t~ee-I~~ii~~f~~aA~~a~~aGfDgVeih~a 164 (337)
T PRK13523 133 TKEQ-IKETVLAFKQAAVRAKEAGFDVIEIHGA 164 (337)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 4444 5678888888889999999999999843
No 214
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.60 E-value=2.3e+02 Score=26.79 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=37.1
Q ss_pred CcHHHH-HHHHHhh-CCCCCHHHHHHHHHHHHHHHHHHHHH---cCCccccCCCcccchhhhhHHHhhCCCC
Q 016581 13 PKRELK-FALESFW-DGKSSAEDLQKVSADLRSSIWKQMSE---AGIKYIPSNTFSYYDQVLDTTAMLGAVP 79 (387)
Q Consensus 13 ~~~eL~-~a~e~~~-~g~i~~~~l~~~~~~~~~~~v~~Q~~---aGld~itdGef~~~d~vld~~~~~~~v~ 79 (387)
.|.+.+ +++.++. .-.++.++|-+..++..-.++..... -|++.|.-|+= --++...+.+.+++
T Consensus 138 ~PeeeR~E~L~~~~~~~~~~geelfe~lDe~F~rLip~E~gki~~~vk~VGgg~k---a~i~e~~~ele~~d 206 (315)
T COG4030 138 VPEEEREELLSIIDVIASLSGEELFEKLDELFSRLIPSEVGKIVESVKAVGGGEK---AKIMEGYCELEGID 206 (315)
T ss_pred CChHHHHHHHHhcCccccccHHHHHHHHHHHHhhcCHHHHHHHHHhhhhccCcch---hHHHHHHHhhcCCC
Confidence 346666 7777776 45688898888888877665542111 34555544442 23444444455553
No 215
>PRK12999 pyruvate carboxylase; Reviewed
Probab=25.34 E-value=1.1e+03 Score=27.49 Aligned_cols=153 Identities=10% Similarity=0.177 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHH--HcCCCCEEE
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSI--IDMDADVIT 264 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i~ 264 (387)
.|.+.++.+.++|++.|.|=|.+=.. .+......+.+++..+ ++ .+.+|+|--.|. .+...+ .+.++|.+.
T Consensus 692 ~~~~~a~~l~~~Ga~~i~ikDt~G~l--~P~~~~~lv~~lk~~~-~i--pi~~H~Hnt~Gl--a~an~laA~~aGad~vD 764 (1146)
T PRK12999 692 YYVDLAKELEKAGAHILAIKDMAGLL--KPAAAYELVSALKEEV-DL--PIHLHTHDTSGN--GLATYLAAAEAGVDIVD 764 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEECCccCCC--CHHHHHHHHHHHHHHc-CC--eEEEEeCCCCch--HHHHHHHHHHhCCCEEE
Confidence 34455566778899999999877443 3432223455555444 33 456677755564 445555 367888876
Q ss_pred Eec----CCC---Chh-hhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhc-CCCcEEEcCC--------
Q 016581 265 IEN----SRS---NEN-LLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVL-ETNILWVNPD-------- 327 (387)
Q Consensus 265 lE~----~r~---~~e-~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v-~~~~l~isPd-------- 327 (387)
.-. .+. ..+ .+..++. . | +++ ...++...++.+.+++..++. +.+.-..+|+
T Consensus 765 ~av~glg~~tgn~~le~vv~~L~~-~--------~-~~t-~idl~~l~~~s~~~~~~r~~y~~~~~~~~~~~~~v~~~~~ 833 (1146)
T PRK12999 765 VAVASMSGLTSQPSLNSIVAALEG-T--------E-RDT-GLDLDAIRKLSPYWEAVRPYYAPFESGLKSPTTEVYLHEM 833 (1146)
T ss_pred ecchhhcCCcCCHHHHHHHHHHHh-c--------C-CCC-CcCHHHHHHHHHHHHHHHhHhhccCCCCCCCCcCeEEecC
Confidence 441 111 133 2233332 1 1 121 223555667777777666554 3332223333
Q ss_pred -CCCCCCChhh-----HHHHHHHHHHHHHHHHHHhC
Q 016581 328 -CGLKTRKYTE-----VKPALSNMVAATKLLRTQLT 357 (387)
Q Consensus 328 -CGl~~~~~~~-----a~~kL~~lv~~a~~~r~~l~ 357 (387)
.|.-+.-..+ +..++..+.+....+|+.++
T Consensus 834 PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~G 869 (1146)
T PRK12999 834 PGGQYSNLKQQARALGLGDRFEEVKEMYAAVNRMFG 869 (1146)
T ss_pred CCcccchHHHHHHHCChHhHHHHHHHHHHHHHHHcC
Confidence 1221111111 23455666666777777775
No 216
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=25.33 E-value=2.6e+02 Score=25.64 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCC-CCceEEEEecCCCchhHHHHH--HcCCCCEEE
Q 016581 190 EVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQ-DTTQIHTHMCYSNFNDIIHSI--IDMDADVIT 264 (387)
Q Consensus 190 ~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~-~~~~v~lH~C~gn~~~i~~~l--~~l~vD~i~ 264 (387)
+.++.+.++|++.|.|-|..=.. .|. .+.+.++.+.+..+ ..+.+|.|-=+|- .+...+ .+.++|.+.
T Consensus 141 ~~~~~~~~~g~~~i~l~Dt~G~~--~P~---~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl--a~An~laA~~aGa~~id 211 (237)
T PF00682_consen 141 ELAEALAEAGADIIYLADTVGIM--TPE---DVAELVRALREALPDIPLGFHAHNDLGL--AVANALAALEAGADRID 211 (237)
T ss_dssp HHHHHHHHHT-SEEEEEETTS-S---HH---HHHHHHHHHHHHSTTSEEEEEEBBTTS---HHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHcCCeEEEeeCccCCc--CHH---HHHHHHHHHHHhccCCeEEEEecCCccc--hhHHHHHHHHcCCCEEE
Confidence 34555666699999998866543 332 23445555555554 2445566654443 445555 367888863
No 217
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=25.30 E-value=2.5e+02 Score=28.10 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch--hHHHHHHcCCCCEEEEe
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN--DIIHSIIDMDADVITIE 266 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~--~i~~~l~~l~vD~i~lE 266 (387)
.+.+++|.++|+++|.||-.--. . +..++.++.+-+..| ++.|.. ||.- +....|.+.++|++-+=
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s---~~~~~~ik~ik~~~~-~~~via----GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----S---EHVIDMIKKIKKKFP-DVPVIA----GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----S---HHHHHHHHHHHHHST-TSEEEE----EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----H---HHHHHHHHHHHHhCC-CceEEe----cccCCHHHHHHHHHcCCCEEEEe
Confidence 45566788899999999943321 2 234566666666665 455543 5542 45677888999998654
No 218
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=25.08 E-value=5.6e+02 Score=23.77 Aligned_cols=28 Identities=14% Similarity=0.067 Sum_probs=19.0
Q ss_pred EEEEecCC-CchhHHHHHHcCCCCEEEEe
Q 016581 239 IHTHMCYS-NFNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 239 v~lH~C~g-n~~~i~~~l~~l~vD~i~lE 266 (387)
+.++.+.. .+...++.+.+++++.+-+-
T Consensus 5 ~~t~~~~~~~l~~~l~~~~~~G~~~vEl~ 33 (275)
T PRK09856 5 MFTCGHQRLPIEHAFRDASELGYDGIEIW 33 (275)
T ss_pred eeehhheeCCHHHHHHHHHHcCCCEEEEc
Confidence 34444433 35577888889999998774
No 219
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=24.76 E-value=5.9e+02 Score=23.94 Aligned_cols=84 Identities=11% Similarity=0.053 Sum_probs=52.4
Q ss_pred CceEEEEecCCCchhHHHHHHcCCCC-EEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHH
Q 016581 236 TTQIHTHMCYSNFNDIIHSIIDMDAD-VITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMR 314 (387)
Q Consensus 236 ~~~v~lH~C~gn~~~i~~~l~~l~vD-~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~ 314 (387)
+..|.+|+- +-+.++++.|.+.+.. ...+-.-..+.+.++.+-+ . |-.+++|-.-+.. . .+.+++++
T Consensus 127 ~~Pv~iH~r-~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~-~--G~~iS~~g~it~~----~----~~~~~~~~ 194 (258)
T PRK11449 127 DLPVILHSR-RTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQ-L--GYKIGVGGTITYP----R----ASKTRDVI 194 (258)
T ss_pred CCCEEEEec-CccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHH-C--CCEEEeCcccccc----C----cHHHHHHH
Confidence 557889965 6677888888765432 1223321224666666555 2 3345543322211 1 35678888
Q ss_pred hhcCCCcEEEcCCCCCC
Q 016581 315 TVLETNILWVNPDCGLK 331 (387)
Q Consensus 315 ~~v~~~~l~isPdCGl~ 331 (387)
+.+|.+++.+-+|+.+-
T Consensus 195 ~~ipldriL~ETD~P~l 211 (258)
T PRK11449 195 AKLPLASLLLETDAPDM 211 (258)
T ss_pred HhCChhhEEEecCCCCC
Confidence 99999999999999874
No 220
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.59 E-value=2.6e+02 Score=24.29 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCc---ccccCCChHHHHHHHHHHHHHHcCCC-CCceEEEEecCCCc-------h
Q 016581 181 LPKILPIYKEVVSELKAAGASWIQFDEP---LLVMDLDSHKLQAFIHSFRITNCGIQ-DTTQIHTHMCYSNF-------N 249 (387)
Q Consensus 181 ~~~la~~~~~~i~~L~~aG~~~IQiDEP---~l~~~l~~~~~~~a~~~~~~~~~~~~-~~~~v~lH~C~gn~-------~ 249 (387)
-+...+.+.+.++...+.|+++|.+-=+ ........+..+.+++.++.+.+-.. .++.+.++.+.+.. .
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~ 145 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVE 145 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHH
Confidence 4555567777777778889999988844 22221122234566777776665432 25678888885543 3
Q ss_pred hHHHHHHcCCCC--EEEEe
Q 016581 250 DIIHSIIDMDAD--VITIE 266 (387)
Q Consensus 250 ~i~~~l~~l~vD--~i~lE 266 (387)
.+...+.+++-+ .+.+|
T Consensus 146 ~~~~~l~~~~~~~~~i~~D 164 (213)
T PF01261_consen 146 EIYRLLEEVDSPNVGICFD 164 (213)
T ss_dssp HHHHHHHHHTTTTEEEEEE
T ss_pred HHHHHHhhcCCCcceEEEe
Confidence 555555555543 34555
No 221
>PF04008 Adenosine_kin: Adenosine specific kinase; InterPro: IPR007153 The structure of a member of this family from the hyperthermophilic archaeon Pyrobaculum aerophilum contains a modified histidine residue which is interpreted as stable phosphorylation. In vitro binding studies confirmed that adenosine and AMP but not ADP or ATP bind to the protein [].; PDB: 1VGG_A 1RLH_A 1WVQ_A 2GL0_F 2JB7_B 2EKM_C 2D16_D.
Probab=24.55 E-value=36 Score=29.53 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=17.9
Q ss_pred cccccccccCCCCC-CCCHHHHHHHHH
Q 016581 286 AAIGPGVYDIHSPR-IPSTEEIVDRIY 311 (387)
Q Consensus 286 k~l~lGvvd~~s~~-ve~~e~v~~ri~ 311 (387)
..=++||||..+|. +|+.|++++|-+
T Consensus 120 GrgvlGVvDG~~p~GvE~eed~~~Rk~ 146 (155)
T PF04008_consen 120 GRGVLGVVDGFSPKGVETEEDIKERKE 146 (155)
T ss_dssp EEEEEEEEESS--SEE--HHHHHHHHH
T ss_pred CcEEEEEEcCCCCCCccCHHHHHHHHH
Confidence 36789999998875 999999888843
No 222
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=24.54 E-value=5.1e+02 Score=24.31 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=65.2
Q ss_pred HHcCCCEEEecCccccc--CCChH--H-HHHHHHHHHHHHcCCCCCceEEEEecCCCc---hhH---HHHHHcCCCCEEE
Q 016581 196 KAAGASWIQFDEPLLVM--DLDSH--K-LQAFIHSFRITNCGIQDTTQIHTHMCYSNF---NDI---IHSIIDMDADVIT 264 (387)
Q Consensus 196 ~~aG~~~IQiDEP~l~~--~l~~~--~-~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~---~~i---~~~l~~l~vD~i~ 264 (387)
.++|++.|.+-.-..+. ..++. . .+......+.+.++.+. ..|..-+-.|-+ ..+ ...+.+.+++++.
T Consensus 29 e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~-~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~ 107 (240)
T cd06556 29 ADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPL-ALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVK 107 (240)
T ss_pred HHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC-CCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEE
Confidence 44588887777643322 12221 0 23445555555555531 234444444422 222 4556789999999
Q ss_pred EecCCCChhhhHHhhhccCCCcccccccccCCC----------CCCCCHHHHHHHHHHHHhhcC--CCcEEE
Q 016581 265 IENSRSNENLLSVFREGVQYDAAIGPGVYDIHS----------PRIPSTEEIVDRIYEMRTVLE--TNILWV 324 (387)
Q Consensus 265 lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s----------~~ve~~e~v~~ri~~a~~~v~--~~~l~i 324 (387)
||+.....+.++.+.+ ...++.|=+|... .+..+.+.+.+-|+++..+.. ++-+++
T Consensus 108 iED~~~~~~~i~ai~~----a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~ 175 (240)
T cd06556 108 IEGGEWHIETLQMLTA----AAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVM 175 (240)
T ss_pred EcCcHHHHHHHHHHHH----cCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9964322344555655 2345555555521 122345566677777766654 454544
No 223
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=24.40 E-value=3.4e+02 Score=28.98 Aligned_cols=98 Identities=15% Similarity=0.042 Sum_probs=48.7
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcC--CCCCceE--EEEecCCCchhHHHHHHcCCCCEEEEe
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCG--IQDTTQI--HTHMCYSNFNDIIHSIIDMDADVITIE 266 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~--~~~~~~v--~lH~C~gn~~~i~~~l~~l~vD~i~lE 266 (387)
.++.|.++|++.|.+==|... +.. .++++.+++. ++.+..+ ..+...++.+..++.+..++.+.+++=
T Consensus 53 ia~~L~~~Gvd~IE~Gfp~~s----~~D----~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~~~~v~i~ 124 (564)
T TIGR00970 53 YFDLLVRIGFKEIEVGFPSAS----QTD----FDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAKRATVHFY 124 (564)
T ss_pred HHHHHHHcCCCEEEEeCCCCC----HHH----HHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCCCCEEEEE
Confidence 456688889999988755533 222 2223333222 2223332 222223334444555555555567766
Q ss_pred cCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 016581 267 NSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVL 317 (387)
Q Consensus 267 ~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v 317 (387)
.+.++...-..+ --|.+++.+.+.++++++
T Consensus 125 ~~~Sd~h~~~~l---------------------~~s~ee~l~~~~~~v~~a 154 (564)
T TIGR00970 125 NATSILFREVVF---------------------RASRAEVQAIATDGTKLV 154 (564)
T ss_pred EcCCHHHHHHHh---------------------CCCHHHHHHHHHHHHHHH
Confidence 544433322222 124667777777765554
No 224
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=24.35 E-value=6.6e+02 Score=24.37 Aligned_cols=146 Identities=12% Similarity=0.138 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCCEEEecCcccc---cCCChH-H--HHHHHHHHHHHHcCCC-CCceEEEEec-C--CCchhHHH---HH
Q 016581 189 KEVVSELKAAGASWIQFDEPLLV---MDLDSH-K--LQAFIHSFRITNCGIQ-DTTQIHTHMC-Y--SNFNDIIH---SI 255 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~---~~l~~~-~--~~~a~~~~~~~~~~~~-~~~~v~lH~C-~--gn~~~i~~---~l 255 (387)
...++.+.++|+.-|+|+|-... ....+. . .+.++.-++.+.+... .+..|.--.. + ..+++.+. .-
T Consensus 96 ~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY 175 (292)
T PRK11320 96 ARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAY 175 (292)
T ss_pred HHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHH
Confidence 45668888999999999885431 111110 0 1234444444444332 2332211111 0 12443333 33
Q ss_pred HcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCCh
Q 016581 256 IDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKY 335 (387)
Q Consensus 256 ~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~ 335 (387)
.+.++|.+++|... +.+.++.+.+.. +..+.+-++....+...+.++ +..++..++...+.|
T Consensus 176 ~eAGAD~ifi~~~~-~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~--------L~~lGv~~v~~~~~~------- 237 (292)
T PRK11320 176 VEAGADMIFPEAMT-ELEMYRRFADAV--KVPILANITEFGATPLFTTEE--------LASAGVAMVLYPLSA------- 237 (292)
T ss_pred HHcCCCEEEecCCC-CHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHH--------HHHcCCcEEEEChHH-------
Confidence 57899999999644 466666655422 222322333322223345555 455676777666543
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 016581 336 TEVKPALSNMVAATKLLRT 354 (387)
Q Consensus 336 ~~a~~kL~~lv~~a~~~r~ 354 (387)
.+..+++|.++++.+++
T Consensus 238 --~~aa~~a~~~~~~~l~~ 254 (292)
T PRK11320 238 --FRAMNKAAENVYEAIRR 254 (292)
T ss_pred --HHHHHHHHHHHHHHHHH
Confidence 46677778888887775
No 225
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.29 E-value=3.7e+02 Score=25.89 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=32.9
Q ss_pred HHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHHcCCCCEEEEe
Q 016581 192 VSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSIIDMDADVITIE 266 (387)
Q Consensus 192 i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~~l~vD~i~lE 266 (387)
+++..++|+++|++|. +..+..+.++..+ +.... +-. -|+.+ +-++.+.+.++|++++=
T Consensus 201 a~~A~~~gaDyI~lD~------~~~e~l~~~~~~~-------~~~i~--i~A-iGGIt~~ni~~~a~~Gvd~IAvg 260 (277)
T PRK08072 201 VREAVAAGADIIMFDN------RTPDEIREFVKLV-------PSAIV--TEA-SGGITLENLPAYGGTGVDYISLG 260 (277)
T ss_pred HHHHHHcCCCEEEECC------CCHHHHHHHHHhc-------CCCce--EEE-ECCCCHHHHHHHHHcCCCEEEEC
Confidence 3444568999999973 2333322233322 11111 111 25543 45778889999999864
No 226
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=24.12 E-value=6.6e+02 Score=24.27 Aligned_cols=148 Identities=12% Similarity=0.137 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCCEEEecCcccc---cCCChH-H--HHHHHHHHHHHHcCCCC-CceEEEEec-C--CCchhHHH---HH
Q 016581 189 KEVVSELKAAGASWIQFDEPLLV---MDLDSH-K--LQAFIHSFRITNCGIQD-TTQIHTHMC-Y--SNFNDIIH---SI 255 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~---~~l~~~-~--~~~a~~~~~~~~~~~~~-~~~v~lH~C-~--gn~~~i~~---~l 255 (387)
...++.+.++|+.-|+|++-... ..+.+. . .+.++.-++.+.+.... +..|.-=.. + ..+++.+. ..
T Consensus 91 ~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay 170 (285)
T TIGR02317 91 ARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAY 170 (285)
T ss_pred HHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHH
Confidence 45678889999999999985531 111111 0 12344444444443322 332211111 0 12443333 33
Q ss_pred HcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCCh
Q 016581 256 IDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKY 335 (387)
Q Consensus 256 ~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~ 335 (387)
.+.++|.+++|... +.+.++.+.+..+ ..+.+-++....+..-+.++ +..++..++...+.
T Consensus 171 ~~AGAD~vfi~g~~-~~e~i~~~~~~i~--~Pl~~n~~~~~~~p~~s~~e--------L~~lGv~~v~~~~~-------- 231 (285)
T TIGR02317 171 VEAGADMIFPEALT-SLEEFRQFAKAVK--VPLLANMTEFGKTPLFTADE--------LREAGYKMVIYPVT-------- 231 (285)
T ss_pred HHcCCCEEEeCCCC-CHHHHHHHHHhcC--CCEEEEeccCCCCCCCCHHH--------HHHcCCcEEEEchH--------
Confidence 57899999999644 4555666554222 22322222222222335544 45566677765543
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 016581 336 TEVKPALSNMVAATKLLRTQL 356 (387)
Q Consensus 336 ~~a~~kL~~lv~~a~~~r~~l 356 (387)
-.+..+++|.+++..+++.-
T Consensus 232 -~~~aa~~a~~~~~~~l~~~g 251 (285)
T TIGR02317 232 -AFRAMNKAAEAVYNEIKEHG 251 (285)
T ss_pred -HHHHHHHHHHHHHHHHHHcC
Confidence 34667788888888777543
No 227
>PRK09875 putative hydrolase; Provisional
Probab=24.06 E-value=6.6e+02 Score=24.28 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=50.4
Q ss_pred CceEEEEecCCCc-hhHHHHHHcCCC--CEEEEecC-C-CChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHH
Q 016581 236 TTQIHTHMCYSNF-NDIIHSIIDMDA--DVITIENS-R-SNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRI 310 (387)
Q Consensus 236 ~~~v~lH~C~gn~-~~i~~~l~~l~v--D~i~lE~~-r-~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri 310 (387)
+..|.+|...|+- ..+++.+.+.++ +.+.+... + .+.+.+..+.+ .+-.+.+--+.. ....++ ++.++.|
T Consensus 152 G~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~---~G~~l~fD~~g~-~~~~pd-~~r~~~i 226 (292)
T PRK09875 152 GRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMID---LGAYVQFDTIGK-NSYYPD-EKRIAML 226 (292)
T ss_pred CCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHH---cCCEEEeccCCC-cccCCH-HHHHHHH
Confidence 5578999887753 256777777777 67777622 2 25555555544 133333211111 111222 3444445
Q ss_pred HHHHhhcC-CCcEEEcCCCCCCC
Q 016581 311 YEMRTVLE-TNILWVNPDCGLKT 332 (387)
Q Consensus 311 ~~a~~~v~-~~~l~isPdCGl~~ 332 (387)
+...++ + .+|+++|.|-|-.+
T Consensus 227 ~~L~~~-Gy~drilLS~D~~~~~ 248 (292)
T PRK09875 227 HALRDR-GLLNRVMLSMDITRRS 248 (292)
T ss_pred HHHHhc-CCCCeEEEeCCCCCcc
Confidence 544443 5 79999999976653
No 228
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=23.71 E-value=3.8e+02 Score=26.70 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=34.3
Q ss_pred HHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHHHHHH--cCCCCEEE
Q 016581 193 SELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSII--DMDADVIT 264 (387)
Q Consensus 193 ~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~--~l~vD~i~ 264 (387)
+++.++|++.|.|-+..=.. .|.+ +.+.++.+.+.++..+.+|.|--+|- .+...+. +.+++.+.
T Consensus 149 ~~~~~~Ga~~i~l~DT~G~~-~P~~----v~~lv~~l~~~~~v~l~~H~HNd~Gl--A~ANalaA~~aGa~~vd 215 (365)
T TIGR02660 149 EVAAEAGADRFRFADTVGIL-DPFS----TYELVRALRQAVDLPLEMHAHNDLGM--ATANTLAAVRAGATHVN 215 (365)
T ss_pred HHHHHcCcCEEEEcccCCCC-CHHH----HHHHHHHHHHhcCCeEEEEecCCCCh--HHHHHHHHHHhCCCEEE
Confidence 33455799999998876543 2332 33333433343332345556644442 3445553 55677653
No 229
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.68 E-value=2.6e+02 Score=26.58 Aligned_cols=70 Identities=7% Similarity=0.189 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHH--cCCCCEEE
Q 016581 189 KEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSII--DMDADVIT 264 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~--~l~vD~i~ 264 (387)
.+.++.+.++|++.|.|-+..=.. .|.+ +.+.+..+.+.+++++.+++|.= -|+. .+...+. +.+++.+.
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~-~P~~----v~~lv~~l~~~~~~~~~i~~H~H-n~~Gla~AN~laA~~aGa~~vd 213 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSM-YPED----IKRIISLLRSNLDKDIKLGFHAH-NNLQLALANTLEAIELGVEIID 213 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCC-CHHH----HHHHHHHHHHhcCCCceEEEEeC-CCccHHHHHHHHHHHcCCCEEE
Confidence 344455667799999998877554 2332 33333333344442344555522 2332 3444443 55676653
No 230
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=23.45 E-value=5.1e+02 Score=24.56 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCCCceEEEEecCCCchh--------HHHHHHcCCCCEEEEecCCCChhhhHHhhh
Q 016581 221 AFIHSFRITNCGIQDTTQIHTHMCYSNFND--------IIHSIIDMDADVITIENSRSNENLLSVFRE 280 (387)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~--------i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~ 280 (387)
....-.+.+.++.+.. .|..-+-+|+|.. ....+.+.+++++.||......+.++.+.+
T Consensus 59 em~~~~~~V~r~~~~p-~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~~~~~~I~al~~ 125 (254)
T cd06557 59 EMIYHTRAVRRGAPRA-LVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAEVAETIRALVD 125 (254)
T ss_pred HHHHHHHHHHhcCCCC-eEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHH
Confidence 3444455555665432 2445556666542 233334488888888853212334444444
No 231
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=23.42 E-value=1.7e+02 Score=30.57 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHH---HHHHHHHcCCCEEEecCccccc
Q 016581 176 SVLSLLPKILPIYKE---VVSELKAAGASWIQFDEPLLVM 212 (387)
Q Consensus 176 ~~~~l~~~la~~~~~---~i~~L~~aG~~~IQiDEP~l~~ 212 (387)
+++....+|.-.-++ .++.|+ .|++++-+|||.-+.
T Consensus 133 dp~~~V~dLsVG~qQRVEIlKaLy-r~a~iLILDEPTaVL 171 (501)
T COG3845 133 DPDAKVADLSVGEQQRVEILKALY-RGARLLILDEPTAVL 171 (501)
T ss_pred CccceeecCCcchhHHHHHHHHHh-cCCCEEEEcCCcccC
Confidence 344444444433333 334444 499999999997664
No 232
>PRK10425 DNase TatD; Provisional
Probab=22.90 E-value=6.4e+02 Score=23.73 Aligned_cols=84 Identities=7% Similarity=0.052 Sum_probs=50.9
Q ss_pred CceEEEEecCCCchhHHHHHHcC--CC-CEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHH
Q 016581 236 TTQIHTHMCYSNFNDIIHSIIDM--DA-DVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYE 312 (387)
Q Consensus 236 ~~~v~lH~C~gn~~~i~~~l~~l--~v-D~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~ 312 (387)
+..+.+|.- +...++++.|.+. +. .++ +-.-..+.+.++.+-+ .|-.+++|-.-+... . ...+++
T Consensus 121 ~~Pv~iH~r-~a~~~~l~iL~~~~~~~~~~i-~H~fsG~~~~~~~~l~---~G~~~si~g~i~~~~---~----~~~~~~ 188 (258)
T PRK10425 121 NMPVFMHCR-DAHERFMALLEPWLDKLPGAV-LHCFTGTREEMQACLA---RGLYIGITGWVCDER---R----GLELRE 188 (258)
T ss_pred CCCeEEEEe-CchHHHHHHHHHhccCCCCeE-EEecCCCHHHHHHHHH---CCCEEEECceeeccc---c----cHHHHH
Confidence 457889976 6677788877653 22 233 3321224666666555 244555543211110 0 236778
Q ss_pred HHhhcCCCcEEEcCCCCCC
Q 016581 313 MRTVLETNILWVNPDCGLK 331 (387)
Q Consensus 313 a~~~v~~~~l~isPdCGl~ 331 (387)
+++.+|.+++.+-+|+.+-
T Consensus 189 ~~~~ipldrlLlETDaP~l 207 (258)
T PRK10425 189 LLPLIPAERLLLETDAPYL 207 (258)
T ss_pred HHHhCChHHEEEeccCCCC
Confidence 8899999999999999874
No 233
>PLN02428 lipoic acid synthase
Probab=22.73 E-value=7.8e+02 Score=24.59 Aligned_cols=126 Identities=14% Similarity=0.145 Sum_probs=59.8
Q ss_pred HHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCc---hhHHHHHHcCCCCEEE--E
Q 016581 191 VVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNF---NDIIHSIIDMDADVIT--I 265 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~---~~i~~~l~~l~vD~i~--l 265 (387)
.++++.+.|++.|.|--..- .++++...+...+.++.+-+..| .+.+++...++ .+.+..|.+.++|.+. +
T Consensus 138 vA~~v~~~Glk~vvltSg~r-ddl~D~ga~~~~elir~Ir~~~P---~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnl 213 (349)
T PLN02428 138 VAEAIASWGVDYVVLTSVDR-DDLPDGGSGHFAETVRRLKQLKP---EILVEALVPDFRGDLGAVETVATSGLDVFAHNI 213 (349)
T ss_pred HHHHHHHcCCCEEEEEEcCC-CCCCcccHHHHHHHHHHHHHhCC---CcEEEEeCccccCCHHHHHHHHHcCCCEEccCc
Confidence 33445567988666532211 01121112244555544444333 23344443343 3678888999999985 4
Q ss_pred ecC-------C---CChh-hhHHhhhc--cCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEE
Q 016581 266 ENS-------R---SNEN-LLSVFREG--VQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWV 324 (387)
Q Consensus 266 E~~-------r---~~~e-~L~~~~~~--~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~i 324 (387)
|++ + .+.+ .|+.++.. ...+..+-.|++=+. -||.|++.+.++. ++.++.+.+.+
T Consensus 214 ETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL---GET~Edv~e~l~~-Lrelgvd~vti 281 (349)
T PLN02428 214 ETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL---GETDEEVVQTMED-LRAAGVDVVTF 281 (349)
T ss_pred cCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec---CCCHHHHHHHHHH-HHHcCCCEEee
Confidence 431 1 1222 23333220 100111112222222 3888888888777 45556555554
No 234
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.65 E-value=7e+02 Score=24.07 Aligned_cols=127 Identities=9% Similarity=0.050 Sum_probs=68.4
Q ss_pred HHHHHcCCC-EEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCC-CchhHHHHHHcCCCCEEEEecCCC
Q 016581 193 SELKAAGAS-WIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYS-NFNDIIHSIIDMDADVITIENSRS 270 (387)
Q Consensus 193 ~~L~~aG~~-~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~g-n~~~i~~~l~~l~vD~i~lE~~r~ 270 (387)
++-.+.+.. +||+-+..+.+ ...+ ......+.+.+.. .++|.+|+--| +++.+ ....+++++-+-+|.|..
T Consensus 36 ~AAee~~sPvIiq~~~~~~~~-~g~~---~~~~~~~~~A~~~--~VPV~lHLDHg~~~e~i-~~Ai~~GftSVM~DgS~l 108 (284)
T PRK09195 36 ETAAELHSPVIIAGTPGTFSY-AGTE---YLLAIVSAAAKQY--HHPLALHLDHHEKFDDI-AQKVRSGVRSVMIDGSHL 108 (284)
T ss_pred HHHHHhCCCEEEEcChhHHhh-CCHH---HHHHHHHHHHHHC--CCCEEEECCCCCCHHHH-HHHHHcCCCEEEeCCCCC
Confidence 334444666 89998876654 2222 2445555555554 45788888766 55444 344477999999997766
Q ss_pred Chh-hhHH---hhh-ccCCC--cccccccccCCC---------CCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 016581 271 NEN-LLSV---FRE-GVQYD--AAIGPGVYDIHS---------PRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKT 332 (387)
Q Consensus 271 ~~e-~L~~---~~~-~~~~~--k~l~lGvvd~~s---------~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~ 332 (387)
+++ .++. +.+ .+..+ -.-=+|.|-... ...-+||+..+-+++- +.+ +++++.|-..
T Consensus 109 ~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T----gvD--~LAvaiGt~H 180 (284)
T PRK09195 109 PFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEAT----GID--SLAVAIGTAH 180 (284)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHH----CcC--EEeeccCccc
Confidence 543 3322 211 11111 122345553221 1245788877777642 223 5555555543
No 235
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=22.53 E-value=2.8e+02 Score=26.26 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=37.4
Q ss_pred HHHHHHHcCCCEEEecC--cccccC--CChHHHHHHHHHHHHHHcCCCCCceEEEEecCC----CchhHHHHHHcCCCCE
Q 016581 191 VVSELKAAGASWIQFDE--PLLVMD--LDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYS----NFNDIIHSIIDMDADV 262 (387)
Q Consensus 191 ~i~~L~~aG~~~IQiDE--P~l~~~--l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~g----n~~~i~~~l~~l~vD~ 262 (387)
.++.+.++|++.|.|+= |..... +... .+...+.+..+.+.+ +..+.+-+-.+ +...++..+.+.++|.
T Consensus 116 ~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~-~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~ 192 (289)
T cd02810 116 LARKIERAGAKALELNLSCPNVGGGRQLGQD-PEAVANLLKAVKAAV--DIPLLVKLSPYFDLEDIVELAKAAERAGADG 192 (289)
T ss_pred HHHHHHHhCCCEEEEEcCCCCCCCCcccccC-HHHHHHHHHHHHHcc--CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 34556667999999873 432210 1001 112333333333333 22333333211 2235677788899999
Q ss_pred EEEe
Q 016581 263 ITIE 266 (387)
Q Consensus 263 i~lE 266 (387)
+.+-
T Consensus 193 i~~~ 196 (289)
T cd02810 193 LTAI 196 (289)
T ss_pred EEEE
Confidence 9886
No 236
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=22.30 E-value=2.6e+02 Score=27.58 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch-hHHHHHH--cCCCCEE
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN-DIIHSII--DMDADVI 263 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~-~i~~~l~--~l~vD~i 263 (387)
+.+.++.+.++|++.|-|=+..=.. .+.+.. ..+.+++ +.+++++++++|.= -|+. .+...+. +.+++.+
T Consensus 145 l~~~a~~~~~~Ga~~i~i~DT~G~~-~P~~v~-~~v~~l~---~~l~~~i~ig~H~H-nnlGla~ANslaAi~aGa~~i 217 (333)
T TIGR03217 145 LAEQAKLMESYGADCVYIVDSAGAM-LPDDVR-DRVRALK---AVLKPETQVGFHAH-HNLSLAVANSIAAIEAGATRI 217 (333)
T ss_pred HHHHHHHHHhcCCCEEEEccCCCCC-CHHHHH-HHHHHHH---HhCCCCceEEEEeC-CCCchHHHHHHHHHHhCCCEE
Confidence 4455566777899999998877554 233222 3344443 44443456666632 3333 3444443 5677764
No 237
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=22.26 E-value=4e+02 Score=25.40 Aligned_cols=72 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCC-CCceEEEEecCCCchhHHHHH--HcCCCCE
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQ-DTTQIHTHMCYSNFNDIIHSI--IDMDADV 262 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~-~~~~v~lH~C~gn~~~i~~~l--~~l~vD~ 262 (387)
+.+.+.++.+.++|++.|.|-+..-.. .|. .+.+.++.+.+..| ..+.+|.|--+|- .+...+ .+.++|.
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l~DT~G~~-~P~----~v~~lv~~l~~~~~~~~i~~H~Hnd~Gl--A~AN~laA~~aGa~~ 221 (274)
T cd07938 149 ERVAEVAERLLDLGCDEISLGDTIGVA-TPA----QVRRLLEAVLERFPDEKLALHFHDTRGQ--ALANILAALEAGVRR 221 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCcc-CHH----HHHHHHHHHHHHCCCCeEEEEECCCCCh--HHHHHHHHHHhCCCE
Q ss_pred EE
Q 016581 263 IT 264 (387)
Q Consensus 263 i~ 264 (387)
+.
T Consensus 222 id 223 (274)
T cd07938 222 FD 223 (274)
T ss_pred EE
No 238
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=21.94 E-value=7.8e+02 Score=24.31 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=68.1
Q ss_pred HHHHHcCCC-EEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCC-CchhHHHHHHcCCCCEEEEecCCC
Q 016581 193 SELKAAGAS-WIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYS-NFNDIIHSIIDMDADVITIENSRS 270 (387)
Q Consensus 193 ~~L~~aG~~-~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~g-n~~~i~~~l~~l~vD~i~lE~~r~ 270 (387)
++-.+.+.. +||+.+..+.+ ............+....+.....++|.+|.--| +++. +..-.+++++-+.+|.|..
T Consensus 42 ~AAee~~sPvIlq~s~~~~~~-~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~-i~~ai~~GftSVMiD~S~l 119 (321)
T PRK07084 42 QACVETKSPVILQVSKGARKY-ANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFEL-CKDCIDSGFSSVMIDGSHL 119 (321)
T ss_pred HHHHHhCCCEEEEechhHHhh-CCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHH-HHHHHHcCCCEEEeeCCCC
Confidence 334444666 89998876654 232222233444444443332135678888766 4443 4444577999999997665
Q ss_pred Chh-hhHH---hhh-ccCCC--cccccccc----cC---CCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCC
Q 016581 271 NEN-LLSV---FRE-GVQYD--AAIGPGVY----DI---HSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTR 333 (387)
Q Consensus 271 ~~e-~L~~---~~~-~~~~~--k~l~lGvv----d~---~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~ 333 (387)
+++ .++. +.+ .+..+ -.-=+|-| |. ......+||+..+-+++ .+. .+++++.|-.+-
T Consensus 120 p~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~----Tgv--D~LAvaiGt~HG 190 (321)
T PRK07084 120 PYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKK----TGV--DSLAISIGTSHG 190 (321)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHH----hCC--CEEeeccccccc
Confidence 433 3322 211 11111 11112222 22 12235678888777776 233 366666665543
No 239
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=21.79 E-value=8.1e+02 Score=24.44 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCCEEEecCccc
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLL 210 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l 210 (387)
++-.+++++|.++||++|-+-=|..
T Consensus 34 ~atv~QI~~L~~aGceiVRvavp~~ 58 (346)
T TIGR00612 34 DSTVAQIRALEEAGCDIVRVTVPDR 58 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCH
Confidence 3555677899999999999876654
No 240
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=21.78 E-value=6.7e+02 Score=23.51 Aligned_cols=63 Identities=24% Similarity=0.421 Sum_probs=34.0
Q ss_pred hHHHHHHcCC-CCEEEEecCCCChhhhHHhhhccCCCcccccccc-cCCC-CCCCCHHHHHHHHHHHHhh
Q 016581 250 DIIHSIIDMD-ADVITIENSRSNENLLSVFREGVQYDAAIGPGVY-DIHS-PRIPSTEEIVDRIYEMRTV 316 (387)
Q Consensus 250 ~i~~~l~~l~-vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvv-d~~s-~~ve~~e~v~~ri~~a~~~ 316 (387)
.++..+.+++ +|.+.+|.... .+.++.+.+ . -+.-...+| +-|+ ...++.+++.+.++++.+.
T Consensus 99 ~ll~~~~~~~~~d~vDiEl~~~-~~~~~~l~~-~--~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~ 164 (253)
T PRK02412 99 ALIKAVIKSGLPDYIDVELFSG-KDVVKEMVA-F--AHEHGVKVVLSYHDFEKTPPKEEIVERLRKMESL 164 (253)
T ss_pred HHHHHHHhcCCCCEEEEeccCC-hHHHHHHHH-H--HHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHh
Confidence 4566667778 89999996443 222322211 0 001112233 3343 3456668888888886554
No 241
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=21.70 E-value=7.5e+02 Score=24.03 Aligned_cols=149 Identities=13% Similarity=0.076 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCEEEecCcccc---cCCChH-H--HHHHHHHHHHHHcCCC-CCceEEEEec-C--CCchhHHHH---H
Q 016581 189 KEVVSELKAAGASWIQFDEPLLV---MDLDSH-K--LQAFIHSFRITNCGIQ-DTTQIHTHMC-Y--SNFNDIIHS---I 255 (387)
Q Consensus 189 ~~~i~~L~~aG~~~IQiDEP~l~---~~l~~~-~--~~~a~~~~~~~~~~~~-~~~~v~lH~C-~--gn~~~i~~~---l 255 (387)
...++.+.++|+.-|+|++-... ..+.+. . .+..+.-++.+.+... .+..|.--.. + ..+++.+.. -
T Consensus 95 ~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY 174 (294)
T TIGR02319 95 WRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREY 174 (294)
T ss_pred HHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHH
Confidence 45678889999999999885432 111111 0 1233444444443332 2322211111 1 124444443 3
Q ss_pred HcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCCCCCCCCh
Q 016581 256 IDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKY 335 (387)
Q Consensus 256 ~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~ 335 (387)
.+.++|++++|... +.+.++.+.+..+ ..+.+-++........+.++ +..++..++...+.
T Consensus 175 ~eAGAD~ifi~~~~-~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~e--------L~~lG~~~v~~~~~-------- 235 (294)
T TIGR02319 175 VAAGADCIFLEAML-DVEEMKRVRDEID--APLLANMVEGGKTPWLTTKE--------LESIGYNLAIYPLS-------- 235 (294)
T ss_pred HHhCCCEEEecCCC-CHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHH--------HHHcCCcEEEEcHH--------
Confidence 47899999999644 4555655554222 22322333322222335555 34556666655443
Q ss_pred hhHHHHHHHHHHHHHHHHHHhC
Q 016581 336 TEVKPALSNMVAATKLLRTQLT 357 (387)
Q Consensus 336 ~~a~~kL~~lv~~a~~~r~~l~ 357 (387)
..+..+++|.++++.+++.=.
T Consensus 236 -~~~aa~~a~~~~~~~l~~~G~ 256 (294)
T TIGR02319 236 -GWMAAASVLRKLFTELREAGT 256 (294)
T ss_pred -HHHHHHHHHHHHHHHHHHcCC
Confidence 356778888888888885443
No 242
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.55 E-value=2.3e+02 Score=26.45 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=28.3
Q ss_pred HHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEE
Q 016581 195 LKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTH 242 (387)
Q Consensus 195 L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH 242 (387)
..+.+.+++-+|||.-.. ++.-.+...+.++.....-...+.+.+|
T Consensus 152 vLa~~P~iliLDEPta~L--D~~~~~~l~~~l~~L~~~~~~tii~~tH 197 (235)
T COG1122 152 VLAMGPEILLLDEPTAGL--DPKGRRELLELLKKLKEEGGKTIIIVTH 197 (235)
T ss_pred HHHcCCCEEEEcCCCCCC--CHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 344578999999999775 4544445666666554443223455555
No 243
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.45 E-value=4.1e+02 Score=27.95 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCch--hHHHHHHcCCCCEEEE
Q 016581 188 YKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFN--DIIHSIIDMDADVITI 265 (387)
Q Consensus 188 ~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~--~i~~~l~~l~vD~i~l 265 (387)
+.+.+++|.++|++.|.|| .+.. .+ +...+.++.+-+..+.++.| .-||.- .-...+.+.++|++-+
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd---~a~g-~~---~~~~~~i~~ir~~~~~~~~V----~aGnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 243 YAERVPALVEAGADVLCID---SSEG-YS---EWQKRTLDWIREKYGDSVKV----GAGNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred HHHHHHHHHHhCCCeEeec---Cccc-cc---HHHHHHHHHHHHhCCCCceE----EeccccCHHHHHHHHHcCCCEEEE
Confidence 3466777999999999999 2211 12 13455665555555433333 237754 3466677889999855
No 244
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=21.38 E-value=9.1e+02 Score=24.88 Aligned_cols=84 Identities=13% Similarity=0.344 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCC--C------chhHHHHHHcC
Q 016581 187 IYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYS--N------FNDIIHSIIDM 258 (387)
Q Consensus 187 ~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~g--n------~~~i~~~l~~l 258 (387)
++..+++..++.|.+++.|=+. .+ +..-.+.++++... . +..+..-+||- . |-++...|.++
T Consensus 99 vVe~Fv~ka~~nGidvfRiFDA---lN-D~RNl~~ai~a~kk----~--G~h~q~~i~YT~sPvHt~e~yv~~akel~~~ 168 (472)
T COG5016 99 VVEKFVEKAAENGIDVFRIFDA---LN-DVRNLKTAIKAAKK----H--GAHVQGTISYTTSPVHTLEYYVELAKELLEM 168 (472)
T ss_pred HHHHHHHHHHhcCCcEEEechh---cc-chhHHHHHHHHHHh----c--CceeEEEEEeccCCcccHHHHHHHHHHHHHc
Confidence 4456677788999998877552 21 22223345555433 2 23455566752 1 22678889999
Q ss_pred CCCEEEEecCCC------ChhhhHHhhh
Q 016581 259 DADVITIENSRS------NENLLSVFRE 280 (387)
Q Consensus 259 ~vD~i~lE~~r~------~~e~L~~~~~ 280 (387)
++|.|.|-+... ..+..+.+++
T Consensus 169 g~DSIciKDmaGlltP~~ayelVk~iK~ 196 (472)
T COG5016 169 GVDSICIKDMAGLLTPYEAYELVKAIKK 196 (472)
T ss_pred CCCEEEeecccccCChHHHHHHHHHHHH
Confidence 999999983322 1355666665
No 245
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=21.24 E-value=6.6e+02 Score=23.90 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHc-CCCEEEecCccc-ccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCchhHH---HHHHcCCC
Q 016581 186 PIYKEVVSELKAA-GASWIQFDEPLL-VMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDII---HSIIDMDA 260 (387)
Q Consensus 186 ~~~~~~i~~L~~a-G~~~IQiDEP~l-~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~~~i~---~~l~~l~v 260 (387)
+.+++.++.+.+. |++-|-+---.- ...+..+.+ .+.++.+++.+...+.|..++...+..+.+ ....++++
T Consensus 21 ~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er---~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 21 DVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEER---KQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGY 97 (288)
T ss_pred HHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHH---HHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCC
Confidence 4677788888889 999766653221 111333333 333333333333356677777545665433 44568899
Q ss_pred CEEEEe
Q 016581 261 DVITIE 266 (387)
Q Consensus 261 D~i~lE 266 (387)
|++.+=
T Consensus 98 d~v~~~ 103 (288)
T cd00954 98 DAISAI 103 (288)
T ss_pred CEEEEe
Confidence 998753
No 246
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=21.06 E-value=2e+02 Score=29.26 Aligned_cols=75 Identities=24% Similarity=0.217 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcEEEc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHhC-----------CCccccCCcc
Q 016581 300 IPSTEEIVDRIYEMRTVLETNILWVN-PDCGLKTRKYTEVKPALSNMVAATKLLRTQLT-----------VPRRLEGSFL 367 (387)
Q Consensus 300 ve~~e~v~~ri~~a~~~v~~~~l~is-PdCGl~~~~~~~a~~kL~~lv~~a~~~r~~l~-----------~~~~~~~~~~ 367 (387)
.-+++++..++...... -..+.+| |.||=++.+ +...+.|-.|...-....++.- ..+-+||+|-
T Consensus 265 ~Ks~~elv~~l~dvVsk--gg~llLnIpp~gdG~ip-~~~k~rL~d~a~wl~~~~~ai~g~~pw~~~~~~pt~~~Eg~~~ 341 (430)
T COG3669 265 YKSVEELVSILFDVVSK--GGPLLLNIPPKGDGLIP-DLDKERLLDMAGWLNVNYGAILGLGPWRVGCAGPTDGVEGSFT 341 (430)
T ss_pred cccHHHHhhhhhhhhcc--CCceEeccCCCCCCccc-HHHHHHHHHHHHHHHHhcccccCCCceeeeccCCCCCcccccc
Confidence 34567777776665544 2566666 889988776 4445555556555555555441 1233889999
Q ss_pred hhhhHHHHhH
Q 016581 368 SHCASIFEQT 377 (387)
Q Consensus 368 ~~~~~~~~~~ 377 (387)
.-|+++|+|.
T Consensus 342 ~~~a~~~~~~ 351 (430)
T COG3669 342 ASDADPFIQL 351 (430)
T ss_pred cccCCccchh
Confidence 9999999874
No 247
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.83 E-value=6.6e+02 Score=25.59 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCCEEEec----CcccccCCCh-HHHHHHHHHHHHHHcCCCCCceEEEEecCC-Cc----hhHHHHHHcCC
Q 016581 190 EVVSELKAAGASWIQFD----EPLLVMDLDS-HKLQAFIHSFRITNCGIQDTTQIHTHMCYS-NF----NDIIHSIIDMD 259 (387)
Q Consensus 190 ~~i~~L~~aG~~~IQiD----EP~l~~~l~~-~~~~~a~~~~~~~~~~~~~~~~v~lH~C~g-n~----~~i~~~l~~l~ 259 (387)
+.++.+.+.|++.|.+| +|.....+.. ...+.+.+.+..+.++. .+.+.+=+|.| |- ..++..+.+++
T Consensus 119 e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~~--~v~~~ivlIPGiND~eel~~ti~~L~~lg 196 (404)
T TIGR03278 119 EIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCESC--EVHAASVIIPGVNDGDVLWKTCADLESWG 196 (404)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhcC--CEEEEEEEeCCccCcHHHHHHHHHHHHCC
Confidence 34566778899988887 3433221110 01134666666666643 55666667765 22 25666777888
Q ss_pred CCEEEEecCCCChhhhHHhhhccCCCcccccccccCCC-CCCCCHHHHHHHHHHHHhhcC
Q 016581 260 ADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHS-PRIPSTEEIVDRIYEMRTVLE 318 (387)
Q Consensus 260 vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s-~~ve~~e~v~~ri~~a~~~v~ 318 (387)
++.+.+.--+. +. .+|. .+|.-.... ...++.+++.+.+++..+..+
T Consensus 197 ~~~V~L~~y~~-------~g----~~ky-~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~ 244 (404)
T TIGR03278 197 AKALILMRFAN-------TE----EQGL-ILGNAPIIPGIKPHTVSEFKNIVRETHKEFP 244 (404)
T ss_pred CCEEEEEeccc-------cc----cccc-ccCCcCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 88877763221 11 1334 666654433 456788888888788777654
No 248
>PRK12928 lipoyl synthase; Provisional
Probab=20.34 E-value=7.8e+02 Score=23.71 Aligned_cols=130 Identities=14% Similarity=0.211 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCCCc----hhHHHHHHcCCCCEEEE
Q 016581 190 EVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNF----NDIIHSIIDMDADVITI 265 (387)
Q Consensus 190 ~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~gn~----~~i~~~l~~l~vD~i~l 265 (387)
+.++++.+.|++.|.|---. ..++++.-.+...+.++.+.+..+ . +.++++..++ .+.+..+.+.+++++..
T Consensus 94 ~~a~~~~~~G~keivitg~~-~dDl~d~g~~~~~ell~~Ik~~~p-~--~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~h 169 (290)
T PRK12928 94 RVAEAVAALGLRYVVLTSVA-RDDLPDGGAAHFVATIAAIRARNP-G--TGIEVLTPDFWGGQRERLATVLAAKPDVFNH 169 (290)
T ss_pred HHHHHHHHCCCCEEEEEEEe-CCcccccCHHHHHHHHHHHHhcCC-C--CEEEEeccccccCCHHHHHHHHHcCchhhcc
Confidence 44555667799877663211 112221111234555554433322 2 3456654443 35566777777776653
Q ss_pred --ecC--------CC-Ch----hhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCCcEEEcCCC
Q 016581 266 --ENS--------RS-NE----NLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDC 328 (387)
Q Consensus 266 --E~~--------r~-~~----e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~~l~isPdC 328 (387)
|++ +. .. +.++.+++ .+.+-.+.-|++=+. -||.|++.+.++.+ +.++.+.+-+.+=+
T Consensus 170 nlEt~~~vl~~m~r~~t~e~~le~l~~ak~-~gp~i~~~s~iIvG~---GET~ed~~etl~~L-rel~~d~v~i~~Yl 242 (290)
T PRK12928 170 NLETVPRLQKAVRRGADYQRSLDLLARAKE-LAPDIPTKSGLMLGL---GETEDEVIETLRDL-RAVGCDRLTIGQYL 242 (290)
T ss_pred cCcCcHHHHHHhCCCCCHHHHHHHHHHHHH-hCCCceecccEEEeC---CCCHHHHHHHHHHH-HhcCCCEEEEEcCC
Confidence 321 11 12 22333333 111122333333332 68999988888875 55788888876543
No 249
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=20.32 E-value=7.8e+02 Score=23.73 Aligned_cols=74 Identities=8% Similarity=0.042 Sum_probs=45.4
Q ss_pred HHHHHHcCCC-EEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEecCC-CchhHHHHHHcCCCCEEEEecCC
Q 016581 192 VSELKAAGAS-WIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYS-NFNDIIHSIIDMDADVITIENSR 269 (387)
Q Consensus 192 i~~L~~aG~~-~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C~g-n~~~i~~~l~~l~vD~i~lE~~r 269 (387)
+++-.+.+.. +||+-+..+.+ .+.+ ........+.+.. .++|.+|+--| +++.+ ..-.+.+++-+.+|.|.
T Consensus 33 i~AAee~~sPvIlq~s~~~~~~-~~~~---~~~~~~~~~a~~~--~VPValHLDHg~~~e~i-~~ai~~GFtSVM~DgS~ 105 (282)
T TIGR01858 33 VETAAEMRSPVILAGTPGTFKH-AGTE---YIVALCSAASTTY--NMPLALHLDHHESLDDI-RQKVHAGVRSAMIDGSH 105 (282)
T ss_pred HHHHHHhCCCEEEEeCccHHhh-CCHH---HHHHHHHHHHHHC--CCCEEEECCCCCCHHHH-HHHHHcCCCEEeecCCC
Confidence 3334445666 89998877755 2222 2344444455554 45788888766 45444 44456799999999766
Q ss_pred CCh
Q 016581 270 SNE 272 (387)
Q Consensus 270 ~~~ 272 (387)
.++
T Consensus 106 lp~ 108 (282)
T TIGR01858 106 FPF 108 (282)
T ss_pred CCH
Confidence 554
No 250
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=20.25 E-value=1.7e+02 Score=29.07 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEEec
Q 016581 179 SLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMC 244 (387)
Q Consensus 179 ~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH~C 244 (387)
.-++++..+|.+.++...++|.+.|-+--=.|+..-.+ .+-+...++++++.+.. +|++|--
T Consensus 125 ~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~~--p~DY~~VY~~lL~q~~~--PVILHWL 186 (382)
T PF06187_consen 125 ASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVARS--PDDYLRVYDRLLSQADE--PVILHWL 186 (382)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH--S--HHHHHHHHHHHHHH-SS---EEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhhCC--HHHHHHHHHHHHHHcCC--CEEEEec
Confidence 34788999999999999999999887765444331111 12467788888888854 6788864
No 251
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=20.17 E-value=5.7e+02 Score=24.23 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCC-CCceEEEEecCCCchhHHHHH--HcCCCCE
Q 016581 186 PIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQ-DTTQIHTHMCYSNFNDIIHSI--IDMDADV 262 (387)
Q Consensus 186 ~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~-~~~~v~lH~C~gn~~~i~~~l--~~l~vD~ 262 (387)
+.+.+.++.+.++|++.|.|-+..=.. .|. ...+.++.+.+.++ ..+.+|.|--+|- .+...+ .+.+++.
T Consensus 151 ~~~~~~~~~~~~~g~~~i~l~DT~G~~-~P~----~v~~lv~~l~~~~~~~~l~~H~Hnd~Gl--a~An~laA~~aGa~~ 223 (273)
T cd07941 151 EYALATLKAAAEAGADWLVLCDTNGGT-LPH----EIAEIVKEVRERLPGVPLGIHAHNDSGL--AVANSLAAVEAGATQ 223 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCC-CHH----HHHHHHHHHHHhCCCCeeEEEecCCCCc--HHHHHHHHHHcCCCE
Q ss_pred EE
Q 016581 263 IT 264 (387)
Q Consensus 263 i~ 264 (387)
+.
T Consensus 224 id 225 (273)
T cd07941 224 VQ 225 (273)
T ss_pred EE
Done!