BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016582
(387 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 128/297 (43%), Gaps = 50/297 (16%)
Query: 108 ISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVS 167
+ ++++ L+ V V VL + R E P PL W+VGY C + + YR+ +
Sbjct: 110 VFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRRRRRRR 169
Query: 168 EPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEY 227
P+ + L ++ +S+ + + + P A H NT
Sbjct: 170 HPED----GGGSGLTNSSSQQYVSLAQLEDRGETSNP-AKHLESANTM------------ 212
Query: 228 FKMALDCFFAVWFVVGNVWI-FGGHSSAADAPNLYRLCIVFLA----ISCIGYAMPFILC 282
F +W+++G W+ GG + ++D+P LY LCI+FL A+ ++
Sbjct: 213 -------FSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIG 265
Query: 283 ATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGG 342
+CCCLPCI++IL +A GA+ ID +P ++F + + + S G
Sbjct: 266 LAVCCCLPCIIAIL---YAVADQEGASKNDIDQMPKFRFT-----KTGNVEKLSGKARGI 317
Query: 343 VVAAGTEK--ERVISGEDA---VCFC-WTAGF-------NHEFRYLVIDLSIFVYHR 386
+ GT+ ER +S EDA +C C + G NH F ID + + R
Sbjct: 318 MTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSR 374
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 28/273 (10%)
Query: 108 ISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVS 167
+ +++V L+ V A +L + R EHP PL W++GYA CV + + YR+ N+
Sbjct: 101 VVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRR 160
Query: 168 EPDSVQSRNSSARLNAPAAPF------SISVPRTSEVEDHRAPIASHRGGQNTGVLSPRF 221
+ + +R ++ ++ ++ R S V+D + G L
Sbjct: 161 TNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQD-----------LSLGHLDTES 209
Query: 222 KVLVEYFKMALDCFFAVWFVVGNVWI-FGGHSSAADAPNLYRLCI----VFLAISCIGYA 276
+ ++ + A F +W+++G W+ GG A ++P +Y L I + A
Sbjct: 210 SSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVA 269
Query: 277 MPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSS 336
+ ++ +CCCLPCI+++L +A GA+ E I+ L +KF+ + + D +
Sbjct: 270 LACVIGIAVCCCLPCIIAVL---YAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQ 326
Query: 337 SIGDGGVVAAGTEK--ERVISGEDA-VCFCWTA 366
+G + GT+ E + EDA C C +A
Sbjct: 327 GTTEGIMTECGTDSPIEHTLLQEDAECCICLSA 359
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 108/267 (40%), Gaps = 50/267 (18%)
Query: 108 ISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLL---YWRYRQSN 164
++ +++ + V+++ V+L E P P+ WI Y C+ + L+ YWR
Sbjct: 78 VAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWR----- 132
Query: 165 QVSEPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVL 224
RNS+ R R E DH + Q++ S + +
Sbjct: 133 ----------RNSTRR------------ARDLESYDHEDYNIEYDYEQDSDDNSTTYSFV 170
Query: 225 VEYFKMALDCFFAVWFVVGNVWIF-GGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCA 283
+ F +W+++G W+ GG +APNLY L ++FLAI +L
Sbjct: 171 KRCESINTVISF-IWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLAC 229
Query: 284 TI----CCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIG 339
+ CCCLPCI+++L +A T G + + LP YKFK S N G
Sbjct: 230 LVGIALCCCLPCIIALL---YAVAGTEGVSEAELGVLPLYKFKAFHSNEKN------ITG 280
Query: 340 DGGVV-----AAGTEKERVISGEDAVC 361
G +V ER + EDA C
Sbjct: 281 PGKMVPIPINGLCLATERTLLAEDADC 307
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 106/266 (39%), Gaps = 64/266 (24%)
Query: 132 EHPRAPLFEWIVGYAAGCVATLPLLYWRY--------------------RQSNQVSEPDS 171
E+P PL WI+GY C+ + + Y S+ + E +
Sbjct: 99 ENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEG 158
Query: 172 VQ-SRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKM 230
+ SRNS R ++E+ A H NT ++ +
Sbjct: 159 LGLSRNSDER-----------YLELGQLENENNSFAKHLESANT---------MISF--- 195
Query: 231 ALDCFFAVWFVVGNVWI-FGGHSSAADAPNLYRLCI----VFLAISCIGYAMPFILCATI 285
+W+V+G W+ GG A +P LY LCI + A+ ++ +
Sbjct: 196 -------IWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAV 248
Query: 286 CCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGD-GGVV 344
CCCLPCI+++L +A+ GA+ E ID L +KF+ + D GD GGV+
Sbjct: 249 CCCLPCIIAVLYA---VAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVM 305
Query: 345 A-AGTEK--ERVISGEDA-VCFCWTA 366
GT+ E + EDA C C +A
Sbjct: 306 TECGTDSPVEHALPHEDAECCICLSA 331
>sp|Q99337|YN12B_YEAST Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-NL2 PE=2 SV=1
Length = 1749
Score = 37.4 bits (85), Expect = 0.19, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 32 HIIDITITDVSSSNSTHD--RTSNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAF 89
H +D+ + S ++TH+ TS D RH D S + N T+ P +S G+N + V
Sbjct: 1015 HRLDVPLLAPMSQSNTHESSHTSKSKD-FRHSDSYSDNETNHTNVPISSTGGTNNKTVPQ 1073
Query: 90 TRRGESRRR---RSP 101
T E+ +R RSP
Sbjct: 1074 TSEQETEKRIIHRSP 1088
>sp|Q12088|YL11B_YEAST Transposon Ty1-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-LR1 PE=1 SV=1
Length = 1755
Score = 37.0 bits (84), Expect = 0.28, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +D+ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V T
Sbjct: 1021 HRLDVPLLAPMSQSNTHESSHASKSKDFRHSDSYSDNETNHTNVPISSTGGTNNKTVPQT 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SEQETEKRIIHRSP 1094
>sp|O13535|YH11B_YEAST Transposon Ty1-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-H PE=1 SV=1
Length = 1793
Score = 37.0 bits (84), Expect = 0.28, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +D+ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V T
Sbjct: 1059 HRLDVPLLAPMSQSNTHESSHASKSKDFRHSDSYSDNETNHTNVPISSTGGTNNKTVPQT 1118
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1119 SEQETEKRIIHRSP 1132
>sp|Q03619|YE12B_YEAST Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-ER2 PE=1 SV=1
Length = 1755
Score = 37.0 bits (84), Expect = 0.28, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +D+ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V T
Sbjct: 1021 HRLDVPLLAPMSQSNTHESSHASKSKDFRHSDSYSDNETNHTNVPISSTGGTNNKTVPQT 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SEQETEKRIIHRSP 1094
>sp|Q12490|YB11B_YEAST Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-BL PE=1 SV=1
Length = 1755
Score = 37.0 bits (84), Expect = 0.28, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +D+ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V T
Sbjct: 1021 HRLDVPLLAPMSQSNTHESSYASKSKDFRHSDSYSDNETNHTNVPISSTGGTNNKTVPQT 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SEQETEKRIIHRSP 1094
>sp|Q04214|YM13B_YEAST Transposon Ty1-MR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-MR1 PE=1 SV=2
Length = 1755
Score = 37.0 bits (84), Expect = 0.29, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +D+ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V T
Sbjct: 1021 HRLDVPLLAPMSQSNTHESSHASKSKDFRHSDSYSDNETNHTNVPISSTGGTNNKTVPQT 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SEQETEKRIIHRSP 1094
>sp|Q12112|YN11B_YEAST Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-NL1 PE=3 SV=1
Length = 1755
Score = 36.2 bits (82), Expect = 0.40, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 32 HIIDITITDVSSSNSTHD--RTSNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAF 89
H +D+ + S +TH+ TS D RH D S + N T+ P +S G+N + V
Sbjct: 1021 HRLDVPLLAPMSQYNTHESSHTSKSKD-FRHSDSYSDNETNHTNVPISSTGGTNNKTVPQ 1079
Query: 90 TRRGESRRR---RSP 101
T E+ +R RSP
Sbjct: 1080 TSEQETEKRIIHRSP 1094
>sp|Q12193|YB12B_YEAST Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-BR PE=1 SV=1
Length = 1756
Score = 35.4 bits (80), Expect = 0.77, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +D+ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V T
Sbjct: 1021 HRLDVPLLAPMSQSNTHESSYASKSKDFRHSDSYSDNETNHTNVPISSTGGTNNKTVPQT 1080
Query: 91 RRGESRRR 98
E+ +R
Sbjct: 1081 SEQETEKR 1088
>sp|P0CAE3|VF329_ASFK5 Transmembrane protein I329L OS=African swine fever virus (isolate
Pig/Kenya/KEN-50/1950) GN=Ken-153 PE=2 SV=1
Length = 329
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 278 PFILCATICCCLPCIVSILGLREDLAQTRGATAES------IDALPTYKFKLKKSR---S 328
PF+L + IC C+ + ++ L + + T + I +P+Y F LKK R +
Sbjct: 239 PFVLVSIICSCISSLFLLICLLRTICKKYSCTKQGKTTHSYIPLIPSYTFSLKKHRHPET 298
Query: 329 SNDRDNSSSIGDGGVVAAGTEKERV 353
+ D++S+ V TE+++V
Sbjct: 299 AVVEDHASTANSPIVYIPTTEEKKV 323
>sp|Q12316|YG13B_YEAST Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-GR3 PE=1 SV=3
Length = 1755
Score = 35.0 bits (79), Expect = 0.93, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V T
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSYASKSKDFRHSDSYSDNETNHTNVPISSTGGTNNKTVPQT 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SEQETEKRIIHRSP 1094
>sp|Q7TSH8|K0195_MOUSE Uncharacterized protein KIAA0195 OS=Mus musculus GN=Kiaa0195 PE=1
SV=1
Length = 1360
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 86 NVAFTRRGESRRRRSPLNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPR-------APL 138
++ R + R+SPL + W V+ L QVV VV L ++ H R PL
Sbjct: 1252 SITHVHRTKPLWRKSPLTNLWWAVTVPVVLLGQVVQTVVDLQLWTHRDSRVHFGLEDVPL 1311
Query: 139 FEWIVG 144
W++G
Sbjct: 1312 LTWLLG 1317
>sp|Q99231|YD12B_YEAST Transposon Ty1-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-DR3 PE=1 SV=2
Length = 1755
Score = 33.9 bits (76), Expect = 2.4, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +D+ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HRLDVPLLAPMSQSNTHESSYASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|P0C2J1|YP14B_YEAST Transposon Ty1-PR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-PR3 PE=3 SV=1
Length = 1755
Score = 32.7 bits (73), Expect = 4.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSNNETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|P0C2I6|YL13B_YEAST Transposon Ty1-LR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-LR3 PE=1 SV=1
Length = 1755
Score = 32.7 bits (73), Expect = 4.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSNNETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|P0CAE4|VF329_ASFM2 Transmembrane protein I329L OS=African swine fever virus (isolate
Tick/Malawi/Lil 20-1/1983) GN=Mal-149 PE=2 SV=1
Length = 329
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 278 PFILCATICCCLPCIVSILGLREDLAQTRGATAES------IDALPTYKFKLKKSRSSND 331
PF+L + +C C+ + I+ L + + T + I +P+Y F LKK R
Sbjct: 239 PFVLVSILCSCISFLFLIICLLRSICKKYSCTKQGKSTHKYIPLIPSYTFSLKKHRHPET 298
Query: 332 ---RDNSSSIGDGGVVAAGTEKER 352
D++++ V TE+++
Sbjct: 299 AVVEDHTTTANSPIVYIPTTEEKK 322
>sp|Q9LMJ1|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2
SV=1
Length = 829
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 89 FTRRGESRRRRSPLNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAG 148
F RGE+ RRS L S W +V ++ + + + S+ EHP
Sbjct: 620 FIDRGETEGRRSVLMSYTWRNVAVIFIEGRDDAEALAFSMRIAEHPE------------- 666
Query: 149 CVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPFSISVPRTSEVED 200
++ ++++R++ S Q + V+S + + L F++S P+ S E+
Sbjct: 667 --VSVTMIHFRHKSSLQQNHVVDVESELAESYLINDFKNFAMSKPKISYREE 716
>sp|O13527|YA11B_YEAST Truncated transposon Ty1-A Gag-Pol polyprotein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-A PE=1
SV=3
Length = 1196
Score = 32.3 bits (72), Expect = 5.9, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 462 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 521
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 522 SDQETEKRIIHRSP 535
>sp|P0C2J0|YP13B_YEAST Transposon Ty1-PR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-PR2 PE=1 SV=1
Length = 1756
Score = 32.0 bits (71), Expect = 7.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1022 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1081
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1082 SDQETEKRIIHRSP 1095
>sp|Q12273|YO11B_YEAST Transposon Ty1-OL Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-OL PE=2 SV=1
Length = 1755
Score = 32.0 bits (71), Expect = 7.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|Q03434|YM12B_YEAST Transposon Ty1-ML2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-ML2 PE=3 SV=2
Length = 1755
Score = 32.0 bits (71), Expect = 7.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|Q12141|YG11B_YEAST Transposon Ty1-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-GR1 PE=3 SV=1
Length = 1755
Score = 32.0 bits (71), Expect = 7.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|Q03612|YE11B_YEAST Transposon Ty1-ER1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-ER1 PE=1 SV=1
Length = 1755
Score = 32.0 bits (71), Expect = 7.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|Q03855|YD11B_YEAST Transposon Ty1-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-DR1 PE=1 SV=2
Length = 1755
Score = 32.0 bits (71), Expect = 7.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|Q12414|YP11B_YEAST Transposon Ty1-PL Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-PL PE=3 SV=1
Length = 1755
Score = 32.0 bits (71), Expect = 7.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|Q92393|YO12B_YEAST Transposon Ty1-OR Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-OR PE=1 SV=1
Length = 1755
Score = 32.0 bits (71), Expect = 7.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|Q04711|YM11B_YEAST Transposon Ty1-ML1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-ML1 PE=2 SV=2
Length = 1755
Score = 32.0 bits (71), Expect = 7.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|P0C2I7|YL14B_YEAST Transposon Ty1-LR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-LR4 PE=5 SV=1
Length = 1755
Score = 32.0 bits (71), Expect = 7.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|P47100|YJ12B_YEAST Transposon Ty1-JR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-JR2 PE=1 SV=3
Length = 1755
Score = 32.0 bits (71), Expect = 7.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|P0C2I9|YP12B_YEAST Transposon Ty1-PR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-PR1 PE=2 SV=1
Length = 1755
Score = 32.0 bits (71), Expect = 7.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|Q04670|YM14B_YEAST Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-MR2 PE=1 SV=2
Length = 1755
Score = 32.0 bits (71), Expect = 7.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|P0C2I5|YL12B_YEAST Transposon Ty1-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-LR2 PE=3 SV=1
Length = 1755
Score = 32.0 bits (71), Expect = 7.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|P47098|YJ11B_YEAST Transposon Ty1-JR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-JR1 PE=1 SV=3
Length = 1755
Score = 32.0 bits (71), Expect = 7.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|Q12269|YG12B_YEAST Transposon Ty1-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-GR2 PE=3 SV=3
Length = 1755
Score = 32.0 bits (71), Expect = 7.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|P0C2I2|YD14B_YEAST Transposon Ty1-DR5 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-DR5 PE=1 SV=1
Length = 1755
Score = 32.0 bits (71), Expect = 7.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|P0C2I3|YD15B_YEAST Transposon Ty1-DR6 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-DR6 PE=2 SV=1
Length = 1755
Score = 32.0 bits (71), Expect = 8.0, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|Q07163|TY1AB_YEASX Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
GN=TY1B PE=1 SV=2
Length = 1755
Score = 32.0 bits (71), Expect = 8.1, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
>sp|Q07793|YD13B_YEAST Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-DR4 PE=3 SV=2
Length = 1604
Score = 32.0 bits (71), Expect = 8.6, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 32 HIIDITITDVSSSNSTHDRT-SNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFT 90
H +++ + S ++TH+ + ++ RH D S + N T+ P +S G+N + V
Sbjct: 1021 HKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 91 RRGESRRR---RSP 101
E+ +R RSP
Sbjct: 1081 SDQETEKRIIHRSP 1094
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,030,852
Number of Sequences: 539616
Number of extensions: 5544656
Number of successful extensions: 17160
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 16901
Number of HSP's gapped (non-prelim): 272
length of query: 387
length of database: 191,569,459
effective HSP length: 119
effective length of query: 268
effective length of database: 127,355,155
effective search space: 34131181540
effective search space used: 34131181540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)