Query 016582
Match_columns 387
No_of_seqs 228 out of 426
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:09:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.2 4.9E-12 1.1E-16 126.8 4.5 54 304-385 203-258 (348)
2 COG5540 RING-finger-containing 97.7 6.1E-06 1.3E-10 81.9 -0.4 27 359-385 324-352 (374)
3 PF13639 zf-RING_2: Ring finge 97.5 2.6E-05 5.7E-10 55.7 -0.1 25 360-384 2-28 (44)
4 PHA02929 N1R/p28-like protein; 96.3 0.0013 2.8E-08 63.8 0.8 56 304-385 146-208 (238)
5 KOG0801 Predicted E3 ubiquitin 95.2 0.0051 1.1E-07 56.8 -0.2 33 351-383 170-204 (205)
6 PF12678 zf-rbx1: RING-H2 zinc 94.9 0.0096 2.1E-07 47.4 0.6 27 358-384 19-57 (73)
7 cd00162 RING RING-finger (Real 94.2 0.014 3.1E-07 39.6 0.3 25 360-384 1-25 (45)
8 KOG0802 E3 ubiquitin ligase [P 92.8 0.03 6.5E-07 59.8 -0.1 36 350-385 283-322 (543)
9 PF00097 zf-C3HC4: Zinc finger 92.5 0.032 6.9E-07 38.7 -0.3 24 361-384 1-24 (41)
10 smart00184 RING Ring finger. E 91.1 0.062 1.4E-06 35.1 -0.1 23 361-384 1-23 (39)
11 COG5243 HRD1 HRD ubiquitin lig 90.8 0.091 2E-06 54.2 0.8 35 350-384 279-325 (491)
12 PF14634 zf-RING_5: zinc-RING 89.2 0.11 2.3E-06 37.2 -0.1 25 360-384 1-27 (44)
13 PF13923 zf-C3HC4_2: Zinc fing 87.4 0.15 3.3E-06 35.4 -0.2 23 361-383 1-23 (39)
14 KOG1734 Predicted RING-contain 87.0 0.17 3.7E-06 50.3 -0.3 30 356-385 222-260 (328)
15 PF13920 zf-C3HC4_3: Zinc fing 84.4 0.24 5.2E-06 36.1 -0.6 25 357-382 1-26 (50)
16 PF13445 zf-RING_UBOX: RING-ty 84.3 0.3 6.4E-06 35.5 -0.1 20 361-381 1-23 (43)
17 PF10367 Vps39_2: Vacuolar sor 83.9 0.36 7.9E-06 39.5 0.3 30 356-385 76-106 (109)
18 PHA02926 zinc finger-like prot 82.2 0.45 9.7E-06 46.3 0.2 29 357-385 169-205 (242)
19 PF15227 zf-C3HC4_4: zinc fing 81.4 0.52 1.1E-05 33.8 0.2 20 361-381 1-20 (42)
20 KOG4445 Uncharacterized conser 80.7 0.29 6.2E-06 49.4 -1.7 26 360-385 117-144 (368)
21 KOG0804 Cytoplasmic Zn-finger 78.5 0.58 1.3E-05 49.3 -0.4 31 355-385 172-205 (493)
22 KOG1941 Acetylcholine receptor 72.2 0.62 1.3E-05 48.6 -2.1 28 359-386 366-396 (518)
23 PF12861 zf-Apc11: Anaphase-pr 69.6 1.6 3.4E-05 36.5 0.1 27 357-383 20-58 (85)
24 KOG1814 Predicted E3 ubiquitin 68.4 1.4 3E-05 46.2 -0.5 26 357-382 183-210 (445)
25 KOG0828 Predicted E3 ubiquitin 59.4 4.6 0.0001 43.4 1.3 27 359-385 572-614 (636)
26 smart00744 RINGv The RING-vari 59.1 2.2 4.7E-05 31.6 -0.8 25 360-384 1-31 (49)
27 KOG2164 Predicted E3 ubiquitin 56.3 4.3 9.3E-05 43.6 0.5 23 358-381 186-208 (513)
28 PF02326 YMF19: Plant ATP synt 55.2 14 0.00031 30.6 3.3 35 258-302 10-44 (86)
29 KOG1039 Predicted E3 ubiquitin 54.3 4.6 0.0001 41.5 0.3 26 356-381 159-191 (344)
30 KOG0320 Predicted E3 ubiquitin 43.7 8.7 0.00019 36.3 0.3 25 358-382 131-156 (187)
31 KOG0317 Predicted E3 ubiquitin 40.3 12 0.00027 37.6 0.8 31 350-381 231-261 (293)
32 PF04505 Dispanin: Interferon- 40.1 17 0.00037 29.7 1.5 16 283-298 25-41 (82)
33 KOG2034 Vacuolar sorting prote 39.4 7.5 0.00016 44.3 -0.9 26 359-384 818-844 (911)
34 PF11712 Vma12: Endoplasmic re 36.7 58 0.0013 28.9 4.5 26 221-246 79-104 (142)
35 COG5194 APC11 Component of SCF 34.1 11 0.00024 31.4 -0.5 7 377-383 54-60 (88)
36 KOG0825 PHD Zn-finger protein 33.8 11 0.00024 42.7 -0.7 26 360-385 125-152 (1134)
37 PF06667 PspB: Phage shock pro 33.2 38 0.00083 27.6 2.5 23 295-317 23-45 (75)
38 smart00504 Ubox Modified RING 31.4 18 0.0004 26.7 0.4 21 360-381 3-23 (63)
39 PRK09458 pspB phage shock prot 29.4 45 0.00097 27.4 2.3 26 292-317 20-45 (75)
40 PF13719 zinc_ribbon_5: zinc-r 28.8 29 0.00064 24.1 1.0 24 360-383 4-37 (37)
41 PF14145 YrhK: YrhK-like prote 28.5 90 0.002 24.1 3.7 42 227-276 6-47 (59)
42 COG5524 Bacteriorhodopsin [Gen 26.8 44 0.00095 33.7 2.2 28 224-251 189-216 (285)
43 PF05478 Prominin: Prominin; 25.8 69 0.0015 36.3 3.7 16 309-324 192-207 (806)
44 PRK10527 hypothetical protein; 25.7 87 0.0019 27.8 3.6 26 263-288 9-40 (125)
45 MTH00169 ATP8 ATP synthase F0 25.6 84 0.0018 25.0 3.2 35 258-302 11-45 (67)
46 PF13994 PgaD: PgaD-like prote 25.3 77 0.0017 28.1 3.3 22 305-326 109-130 (138)
47 KOG4265 Predicted E3 ubiquitin 24.3 27 0.0006 36.1 0.3 23 357-380 289-311 (349)
48 PF06814 Lung_7-TM_R: Lung sev 22.3 1.6E+02 0.0034 28.9 5.1 67 99-165 39-106 (295)
49 KOG1428 Inhibitor of type V ad 22.2 37 0.00079 41.6 0.7 30 356-385 3484-3515(3738)
50 KOG3614 Ca2+/Mg2+-permeable ca 22.2 9.6E+02 0.021 29.5 11.9 35 217-251 851-885 (1381)
51 PF10112 Halogen_Hydrol: 5-bro 22.1 1.8E+02 0.004 26.9 5.3 11 304-314 61-71 (199)
52 COG5574 PEX10 RING-finger-cont 21.8 39 0.00084 33.8 0.7 28 353-381 210-237 (271)
53 TIGR01294 P_lamban phospholamb 21.5 91 0.002 23.5 2.4 14 283-296 38-51 (52)
54 TIGR02976 phageshock_pspB phag 21.0 88 0.0019 25.5 2.5 26 292-317 20-45 (75)
55 PF04272 Phospholamban: Phosph 20.5 1E+02 0.0022 23.3 2.5 14 283-296 38-51 (52)
56 PF06643 DUF1158: Protein of u 20.5 1.2E+02 0.0026 25.0 3.1 22 256-277 46-69 (82)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.9e-12 Score=126.79 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=45.7
Q ss_pred hhccccHHhhccCCceeeeccCCCCCCCCCCCCCCCCCceeccCCccccccCCCCceecccccch--hhhhhhcCCCCcc
Q 016582 304 QTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAGF--NHEFRYLVIDLSI 381 (387)
Q Consensus 304 ~~rGAS~e~I~~LP~~KFk~~~~~~~~~~~~~~~~~~gg~~~~~t~~Er~ls~EDaeCcICLs~Y--GeELR~LPC~H~F 381 (387)
+.+++.|..+.+||.++|+..+.+++ ..+|+|||++| ||+||.|||+|.|
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~----------------------------~~~CaIClEdY~~GdklRiLPC~H~F 254 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDA----------------------------TDTCAICLEDYEKGDKLRILPCSHKF 254 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCC----------------------------CceEEEeecccccCCeeeEecCCCch
Confidence 55789999999999999998654311 13699999999 9999999999999
Q ss_pred cccc
Q 016582 382 FVYH 385 (387)
Q Consensus 382 Hv~h 385 (387)
|+-+
T Consensus 255 H~~C 258 (348)
T KOG4628|consen 255 HVNC 258 (348)
T ss_pred hhcc
Confidence 9865
No 2
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=6.1e-06 Score=81.90 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=25.3
Q ss_pred ceecccccch--hhhhhhcCCCCcccccc
Q 016582 359 AVCFCWTAGF--NHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 359 aeCcICLs~Y--GeELR~LPC~H~FHv~h 385 (387)
.||+||++.| ||++|.|||+|.||+.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~C 352 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGC 352 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhH
Confidence 5899999999 99999999999999865
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.46 E-value=2.6e-05 Score=55.66 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=23.2
Q ss_pred eecccccch--hhhhhhcCCCCccccc
Q 016582 360 VCFCWTAGF--NHEFRYLVIDLSIFVY 384 (387)
Q Consensus 360 eCcICLs~Y--GeELR~LPC~H~FHv~ 384 (387)
+|.||+.+| ++.+..|||+|.||..
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~ 28 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRS 28 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHH
Confidence 699999999 8999999999999964
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.32 E-value=0.0013 Score=63.81 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=38.3
Q ss_pred hhccccHHhhccCCceeeeccCCCCCCCCCCCCCCCCCceeccCCccccccCCCCceecccccch-hhhh-----hhc-C
Q 016582 304 QTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAGF-NHEF-----RYL-V 376 (387)
Q Consensus 304 ~~rGAS~e~I~~LP~~KFk~~~~~~~~~~~~~~~~~~gg~~~~~t~~Er~ls~EDaeCcICLs~Y-GeEL-----R~L-P 376 (387)
..+|-+++-|+.||+.-.+-.+..+ ..++.+|+||++.+ .++. ..| |
T Consensus 146 ~k~~~~~~~i~~lp~vl~~~e~~~~--------------------------~~~~~eC~ICle~~~~~~~~~~~~~vl~~ 199 (238)
T PHA02929 146 KKGKNYKKFLKTIPSVLSEYEKLYN--------------------------RSKDKECAICMEKVYDKEIKNMYFGILSN 199 (238)
T ss_pred HhcchhHHHHHhcchhhhhhhhhhc--------------------------CCCCCCCccCCcccccCccccccceecCC
Confidence 4567899999999988655322110 02456899999998 5443 345 5
Q ss_pred CCCcccccc
Q 016582 377 IDLSIFVYH 385 (387)
Q Consensus 377 C~H~FHv~h 385 (387)
|+|.||..+
T Consensus 200 C~H~FC~~C 208 (238)
T PHA02929 200 CNHVFCIEC 208 (238)
T ss_pred CCCcccHHH
Confidence 999999754
No 5
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.0051 Score=56.85 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=28.5
Q ss_pred ccccCCCCceecccccch--hhhhhhcCCCCcccc
Q 016582 351 ERVISGEDAVCFCWTAGF--NHEFRYLVIDLSIFV 383 (387)
Q Consensus 351 Er~ls~EDaeCcICLs~Y--GeELR~LPC~H~FHv 383 (387)
|-+|+.+.-||.|||++. |+.+-.|||-..||+
T Consensus 170 dDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 170 DDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 446666777999999999 999999999998875
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.86 E-value=0.0096 Score=47.42 Aligned_cols=27 Identities=7% Similarity=0.016 Sum_probs=19.2
Q ss_pred Cceecccccch----------hh--hhhhcCCCCccccc
Q 016582 358 DAVCFCWTAGF----------NH--EFRYLVIDLSIFVY 384 (387)
Q Consensus 358 DaeCcICLs~Y----------Ge--ELR~LPC~H~FHv~ 384 (387)
+..|+||+.+| ++ .+...+|+|.||.-
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~ 57 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFH 57 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHH
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHH
Confidence 34599999999 22 33445899999963
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=94.24 E-value=0.014 Score=39.62 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=21.0
Q ss_pred eecccccchhhhhhhcCCCCccccc
Q 016582 360 VCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 360 eCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
+|.||+..+.+.+..+||+|.||..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~ 25 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRS 25 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHH
Confidence 4999999997777777899999864
No 8
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.03 Score=59.80 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=29.1
Q ss_pred cccccCCCCceecccccch--hhh--hhhcCCCCcccccc
Q 016582 350 KERVISGEDAVCFCWTAGF--NHE--FRYLVIDLSIFVYH 385 (387)
Q Consensus 350 ~Er~ls~EDaeCcICLs~Y--GeE--LR~LPC~H~FHv~h 385 (387)
+|+.+-..|..|.||++.. +++ .+.|||+|.||.-+
T Consensus 283 ~~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~C 322 (543)
T KOG0802|consen 283 EERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSC 322 (543)
T ss_pred HHhhhhhcCCeeeeechhhccccccccceeecccchHHHH
Confidence 4455566789999999999 554 99999999999753
No 9
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=92.47 E-value=0.032 Score=38.75 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=20.2
Q ss_pred ecccccchhhhhhhcCCCCccccc
Q 016582 361 CFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 361 CcICLs~YGeELR~LPC~H~FHv~ 384 (387)
|.||++.|.+..+.+||+|.|...
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~ 24 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRD 24 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHH
T ss_pred CCcCCccccCCCEEecCCCcchHH
Confidence 889999995556999999998753
No 10
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=91.07 E-value=0.062 Score=35.05 Aligned_cols=23 Identities=9% Similarity=-0.084 Sum_probs=18.5
Q ss_pred ecccccchhhhhhhcCCCCccccc
Q 016582 361 CFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 361 CcICLs~YGeELR~LPC~H~FHv~ 384 (387)
|.||+.. ......+||+|.||..
T Consensus 1 C~iC~~~-~~~~~~~~C~H~~c~~ 23 (39)
T smart00184 1 CPICLEE-LKDPVVLPCGHTFCRS 23 (39)
T ss_pred CCcCccC-CCCcEEecCCChHHHH
Confidence 6788877 5678889999999853
No 11
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=0.091 Score=54.19 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=27.1
Q ss_pred cccccCCCCceecccccch---h-h--------hhhhcCCCCccccc
Q 016582 350 KERVISGEDAVCFCWTAGF---N-H--------EFRYLVIDLSIFVY 384 (387)
Q Consensus 350 ~Er~ls~EDaeCcICLs~Y---G-e--------ELR~LPC~H~FHv~ 384 (387)
.|..+...|-.|.||.++. | + +=+.|||+|.||--
T Consensus 279 t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~ 325 (491)
T COG5243 279 TEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLH 325 (491)
T ss_pred hhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHH
Confidence 3556677899999999994 3 2 33899999999953
No 12
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=89.16 E-value=0.11 Score=37.23 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=21.1
Q ss_pred eecccccch--hhhhhhcCCCCccccc
Q 016582 360 VCFCWTAGF--NHEFRYLVIDLSIFVY 384 (387)
Q Consensus 360 eCcICLs~Y--GeELR~LPC~H~FHv~ 384 (387)
+|.||..+| ....+.|+|+|.|...
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~ 27 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEK 27 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHH
Confidence 499999999 5688999999998643
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=87.45 E-value=0.15 Score=35.36 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=18.7
Q ss_pred ecccccchhhhhhhcCCCCcccc
Q 016582 361 CFCWTAGFNHEFRYLVIDLSIFV 383 (387)
Q Consensus 361 CcICLs~YGeELR~LPC~H~FHv 383 (387)
|.||++.+.+-+..+||+|.|..
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~ 23 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCK 23 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEH
T ss_pred CCCCCCcccCcCEECCCCCchhH
Confidence 88999999667789999999864
No 14
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.95 E-value=0.17 Score=50.31 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=25.2
Q ss_pred CCCceecccccch--h-------hhhhhcCCCCcccccc
Q 016582 356 GEDAVCFCWTAGF--N-------HEFRYLVIDLSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~Y--G-------eELR~LPC~H~FHv~h 385 (387)
-+|..|+||..++ . |++..|-|+|.||-++
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfC 260 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFC 260 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHh
Confidence 3678999999999 2 2789999999999775
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=84.35 E-value=0.24 Score=36.12 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=18.0
Q ss_pred CCceecccccchhhhhhhcCCCCc-cc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLS-IF 382 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~-FH 382 (387)
||..|.||++...+ .-.+||+|. |-
T Consensus 1 ~~~~C~iC~~~~~~-~~~~pCgH~~~C 26 (50)
T PF13920_consen 1 EDEECPICFENPRD-VVLLPCGHLCFC 26 (50)
T ss_dssp -HSB-TTTSSSBSS-EEEETTCEEEEE
T ss_pred CcCCCccCCccCCc-eEEeCCCChHHH
Confidence 45689999999832 677899998 53
No 16
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=84.27 E-value=0.3 Score=35.53 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=9.6
Q ss_pred ecccccch-h--hhhhhcCCCCcc
Q 016582 361 CFCWTAGF-N--HEFRYLVIDLSI 381 (387)
Q Consensus 361 CcICLs~Y-G--eELR~LPC~H~F 381 (387)
|.||.+ | . ..=+.|||+|.|
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~ 23 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVF 23 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EE
T ss_pred CCcccc-ccCCCCCCEEEeCccHH
Confidence 899999 9 3 234679999976
No 17
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=83.88 E-value=0.36 Score=39.48 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=25.3
Q ss_pred CCCceecccccch-hhhhhhcCCCCcccccc
Q 016582 356 GEDAVCFCWTAGF-NHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~Y-GeELR~LPC~H~FHv~h 385 (387)
.++..|.+|-... +..+-..||+|.||..+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C 106 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSC 106 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccc
Confidence 4556799999999 77889999999988765
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=82.19 E-value=0.45 Score=46.26 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=19.9
Q ss_pred CCceecccccch-hh------hhhhcC-CCCcccccc
Q 016582 357 EDAVCFCWTAGF-NH------EFRYLV-IDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~Y-Ge------ELR~LP-C~H~FHv~h 385 (387)
+|.+|+||++.- .- ..-.|| |+|.|...+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~C 205 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITC 205 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHH
Confidence 567899999875 21 123564 999997543
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=81.40 E-value=0.52 Score=33.76 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=14.3
Q ss_pred ecccccchhhhhhhcCCCCcc
Q 016582 361 CFCWTAGFNHEFRYLVIDLSI 381 (387)
Q Consensus 361 CcICLs~YGeELR~LPC~H~F 381 (387)
|.||+.-|.+-+. |+|+|.|
T Consensus 1 CpiC~~~~~~Pv~-l~CGH~F 20 (42)
T PF15227_consen 1 CPICLDLFKDPVS-LPCGHSF 20 (42)
T ss_dssp ETTTTSB-SSEEE--SSSSEE
T ss_pred CCccchhhCCccc-cCCcCHH
Confidence 8899998855444 8999987
No 20
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=80.75 E-value=0.29 Score=49.39 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=24.2
Q ss_pred eecccccch--hhhhhhcCCCCcccccc
Q 016582 360 VCFCWTAGF--NHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 360 eCcICLs~Y--GeELR~LPC~H~FHv~h 385 (387)
.|.|||-.| ++++-.-+|.|+||-|+
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy~H~~C 144 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHYMHFAC 144 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHHHHHHH
Confidence 599999999 99999999999999876
No 21
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.52 E-value=0.58 Score=49.34 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=24.8
Q ss_pred CCCCceecccccchhh---hhhhcCCCCcccccc
Q 016582 355 SGEDAVCFCWTAGFNH---EFRYLVIDLSIFVYH 385 (387)
Q Consensus 355 s~EDaeCcICLs~YGe---ELR~LPC~H~FHv~h 385 (387)
..|-++|++||+..++ -++..+|+|.||..+
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~c 205 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSC 205 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHH
Confidence 3577899999999933 457778999999754
No 22
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=72.24 E-value=0.62 Score=48.57 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=24.5
Q ss_pred ceecccccch---hhhhhhcCCCCccccccc
Q 016582 359 AVCFCWTAGF---NHEFRYLVIDLSIFVYHR 386 (387)
Q Consensus 359 aeCcICLs~Y---GeELR~LPC~H~FHv~h~ 386 (387)
.-|--|.+.| .|.|-.|||.|.||.-+.
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl 396 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCL 396 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHH
Confidence 3599999999 789999999999997554
No 23
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=69.57 E-value=1.6 Score=36.48 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=17.6
Q ss_pred CCceecccccch----------hhh--hhhcCCCCcccc
Q 016582 357 EDAVCFCWTAGF----------NHE--FRYLVIDLSIFV 383 (387)
Q Consensus 357 EDaeCcICLs~Y----------GeE--LR~LPC~H~FHv 383 (387)
+|.+|-||...| ||+ |-.--|+|.||.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~ 58 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHM 58 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHH
Confidence 356788888777 443 212239999985
No 24
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.45 E-value=1.4 Score=46.22 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=22.1
Q ss_pred CCceecccccch-h-hhhhhcCCCCccc
Q 016582 357 EDAVCFCWTAGF-N-HEFRYLVIDLSIF 382 (387)
Q Consensus 357 EDaeCcICLs~Y-G-eELR~LPC~H~FH 382 (387)
.--.||||.++. | +-+.-|||.|.|=
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~C 210 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFC 210 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHH
Confidence 345799999999 8 8999999998663
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.43 E-value=4.6 Score=43.44 Aligned_cols=27 Identities=4% Similarity=-0.078 Sum_probs=20.2
Q ss_pred ceecccccch-----hhhhhhc-----------CCCCcccccc
Q 016582 359 AVCFCWTAGF-----NHEFRYL-----------VIDLSIFVYH 385 (387)
Q Consensus 359 aeCcICLs~Y-----GeELR~L-----------PC~H~FHv~h 385 (387)
..|.||..+- |...... ||.|.||.-+
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~C 614 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQC 614 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHH
Confidence 4699999987 5444444 9999999754
No 26
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=59.09 E-value=2.2 Score=31.65 Aligned_cols=25 Identities=4% Similarity=-0.166 Sum_probs=18.6
Q ss_pred eecccccch-hhhhhhcCCC-----Cccccc
Q 016582 360 VCFCWTAGF-NHEFRYLVID-----LSIFVY 384 (387)
Q Consensus 360 eCcICLs~Y-GeELR~LPC~-----H~FHv~ 384 (387)
.|-||+... +++...+||. |.+|.+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~ 31 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQE 31 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHH
Confidence 388999944 5566689986 778865
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.30 E-value=4.3 Score=43.58 Aligned_cols=23 Identities=13% Similarity=-0.055 Sum_probs=18.9
Q ss_pred CceecccccchhhhhhhcCCCCcc
Q 016582 358 DAVCFCWTAGFNHEFRYLVIDLSI 381 (387)
Q Consensus 358 DaeCcICLs~YGeELR~LPC~H~F 381 (387)
|..|.|||+..-.-+|.. |+|.|
T Consensus 186 ~~~CPICL~~~~~p~~t~-CGHiF 208 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTN-CGHIF 208 (513)
T ss_pred CCcCCcccCCCCcccccc-cCcee
Confidence 889999999985556666 99976
No 28
>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=55.24 E-value=14 Score=30.59 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=23.9
Q ss_pred ChhhHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhHHHhhhcchhh
Q 016582 258 PNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDL 302 (387)
Q Consensus 258 P~LY~L~ivfLaf~~I~yalp~Li~iaiCccLPcIiaiL~~~e~~ 302 (387)
+|.+|+|+.|++| |. +.+.+.+|-|..++..|...
T Consensus 10 sQ~fW~~i~f~~~----y~------~~~~~~lP~i~~~lk~R~~~ 44 (86)
T PF02326_consen 10 SQYFWLLIFFFFF----YI------FLVNFILPKISRILKLRSKL 44 (86)
T ss_pred HHHHHHHHHHHHH----HH------HHHHHHHHHHHHHHHHHHHH
Confidence 4678888888664 32 23357789888888776544
No 29
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.34 E-value=4.6 Score=41.49 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=19.5
Q ss_pred CCCceecccccchhhh------hhhcC-CCCcc
Q 016582 356 GEDAVCFCWTAGFNHE------FRYLV-IDLSI 381 (387)
Q Consensus 356 ~EDaeCcICLs~YGeE------LR~LP-C~H~F 381 (387)
..|.+|.||++.-+++ ++.|| |+|.|
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~ 191 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSF 191 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhh
Confidence 4577999999988333 45567 99976
No 30
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.66 E-value=8.7 Score=36.31 Aligned_cols=25 Identities=4% Similarity=-0.096 Sum_probs=18.9
Q ss_pred Cceecccccchhhhh-hhcCCCCccc
Q 016582 358 DAVCFCWTAGFNHEF-RYLVIDLSIF 382 (387)
Q Consensus 358 DaeCcICLs~YGeEL-R~LPC~H~FH 382 (387)
.+-|.|||+.|-+++ -.--|+|.|=
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC 156 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFC 156 (187)
T ss_pred ccCCCceecchhhccccccccchhHH
Confidence 367999999995555 3356999884
No 31
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.26 E-value=12 Score=37.62 Aligned_cols=31 Identities=6% Similarity=-0.135 Sum_probs=23.6
Q ss_pred cccccCCCCceecccccchhhhhhhcCCCCcc
Q 016582 350 KERVISGEDAVCFCWTAGFNHEFRYLVIDLSI 381 (387)
Q Consensus 350 ~Er~ls~EDaeCcICLs~YGeELR~LPC~H~F 381 (387)
++..++..+..|.|||+.= ...-..||+|.|
T Consensus 231 ~~~~i~~a~~kC~LCLe~~-~~pSaTpCGHiF 261 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENR-SNPSATPCGHIF 261 (293)
T ss_pred CCccCCCCCCceEEEecCC-CCCCcCcCcchH
Confidence 4566777778999999875 235578999988
No 32
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=40.06 E-value=17 Score=29.65 Aligned_cols=16 Identities=38% Similarity=0.951 Sum_probs=9.9
Q ss_pred HhHhhhhhhHH-Hhhhc
Q 016582 283 ATICCCLPCIV-SILGL 298 (387)
Q Consensus 283 iaiCccLPcIi-aiL~~ 298 (387)
..+|||+|+.| ++.+.
T Consensus 25 s~l~Cc~PlGi~Ai~~s 41 (82)
T PF04505_consen 25 STLCCCWPLGIVAIVYS 41 (82)
T ss_pred HHHHHHhhHHHHHheec
Confidence 34588898555 45543
No 33
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.36 E-value=7.5 Score=44.32 Aligned_cols=26 Identities=8% Similarity=-0.036 Sum_probs=15.7
Q ss_pred ceecccccch-hhhhhhcCCCCccccc
Q 016582 359 AVCFCWTAGF-NHEFRYLVIDLSIFVY 384 (387)
Q Consensus 359 aeCcICLs~Y-GeELR~LPC~H~FHv~ 384 (387)
.+|.||--.. +......||+|.||..
T Consensus 818 d~C~~C~~~ll~~pF~vf~CgH~FH~~ 844 (911)
T KOG2034|consen 818 DSCDHCGRPLLIKPFYVFPCGHCFHRD 844 (911)
T ss_pred cchHHhcchhhcCcceeeeccchHHHH
Confidence 3455666666 6666666666666653
No 34
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=36.70 E-value=58 Score=28.88 Aligned_cols=26 Identities=19% Similarity=0.547 Sum_probs=20.9
Q ss_pred hhHHHHHHHhhHhHHHHHhheeccee
Q 016582 221 FKVLVEYFKMALDCFFAVWFVVGNVW 246 (387)
Q Consensus 221 ~~~l~~~~~~~Lt~Ff~vWfVvG~vW 246 (387)
+..+++.+-+++.+|+++||..+-.|
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~~~~ 104 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAGYSF 104 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888889999999998887544
No 35
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=34.05 E-value=11 Score=31.45 Aligned_cols=7 Identities=0% Similarity=-0.078 Sum_probs=6.1
Q ss_pred CCCcccc
Q 016582 377 IDLSIFV 383 (387)
Q Consensus 377 C~H~FHv 383 (387)
|+|.||.
T Consensus 54 CnHaFH~ 60 (88)
T COG5194 54 CNHAFHD 60 (88)
T ss_pred cchHHHH
Confidence 9999985
No 36
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=33.84 E-value=11 Score=42.74 Aligned_cols=26 Identities=8% Similarity=-0.222 Sum_probs=20.6
Q ss_pred eecccccch--hhhhhhcCCCCcccccc
Q 016582 360 VCFCWTAGF--NHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 360 eCcICLs~Y--GeELR~LPC~H~FHv~h 385 (387)
.|.|||..+ +.+.-.-+|.|+||..+
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~C 152 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEEC 152 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHH
Confidence 699999999 44455556999999764
No 37
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=33.24 E-value=38 Score=27.64 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=14.8
Q ss_pred hhhcchhhhhhccccHHhhccCC
Q 016582 295 ILGLREDLAQTRGATAESIDALP 317 (387)
Q Consensus 295 iL~~~e~~~~~rGAS~e~I~~LP 317 (387)
+|.|+..-...+|+|++|.++|-
T Consensus 23 ~lHY~sk~~~~~gLs~~d~~~L~ 45 (75)
T PF06667_consen 23 ILHYRSKWKSSQGLSEEDEQRLQ 45 (75)
T ss_pred HHHHHHhcccCCCCCHHHHHHHH
Confidence 45444444467899998876654
No 38
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=31.42 E-value=18 Score=26.69 Aligned_cols=21 Identities=10% Similarity=0.032 Sum_probs=15.4
Q ss_pred eecccccchhhhhhhcCCCCcc
Q 016582 360 VCFCWTAGFNHEFRYLVIDLSI 381 (387)
Q Consensus 360 eCcICLs~YGeELR~LPC~H~F 381 (387)
.|.||+.-+.+-+ .+||+|.|
T Consensus 3 ~Cpi~~~~~~~Pv-~~~~G~v~ 23 (63)
T smart00504 3 LCPISLEVMKDPV-ILPSGQTY 23 (63)
T ss_pred CCcCCCCcCCCCE-ECCCCCEE
Confidence 5999999884444 46898765
No 39
>PRK09458 pspB phage shock protein B; Provisional
Probab=29.43 E-value=45 Score=27.39 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=16.8
Q ss_pred HHHhhhcchhhhhhccccHHhhccCC
Q 016582 292 IVSILGLREDLAQTRGATAESIDALP 317 (387)
Q Consensus 292 IiaiL~~~e~~~~~rGAS~e~I~~LP 317 (387)
|=.+|.|+..-..++|+|++|...|-
T Consensus 20 iWL~LHY~sk~~~~~~Ls~~d~~~L~ 45 (75)
T PRK09458 20 IWLWLHYRSKRQGSQGLSQEEQQRLA 45 (75)
T ss_pred HHHHHhhcccccCCCCCCHHHHHHHH
Confidence 33456555544566799999876664
No 40
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.83 E-value=29 Score=24.14 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=15.8
Q ss_pred eecccccch---hhhhhhc------C-CCCcccc
Q 016582 360 VCFCWTAGF---NHEFRYL------V-IDLSIFV 383 (387)
Q Consensus 360 eCcICLs~Y---GeELR~L------P-C~H~FHv 383 (387)
+|.=|-..| .++|..- | |+|.|+|
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~v 37 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFRV 37 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEeeC
Confidence 699999999 4445442 2 6666654
No 41
>PF14145 YrhK: YrhK-like protein
Probab=28.48 E-value=90 Score=24.12 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=26.7
Q ss_pred HHHhhHhHHHHHhheecceeeeccccCCCCCChhhHHHHHHHHHHHHHHH
Q 016582 227 YFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYA 276 (387)
Q Consensus 227 ~~~~~Lt~Ff~vWfVvG~vWv~~~~ss~~daP~LY~L~ivfLaf~~I~ya 276 (387)
.+..++++...+||++|.+-.+-. .++....|+.+.+++.+.
T Consensus 6 ~~~~~~d~~~~~~FliGSilfl~~--------~~~~~g~wlFiiGS~~f~ 47 (59)
T PF14145_consen 6 IISTVNDFIGGLLFLIGSILFLPE--------SLYTAGTWLFIIGSILFL 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc--------hhHHHHHHHHHHHHHHHH
Confidence 345588899999999997665522 244555555555554433
No 42
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=26.80 E-value=44 Score=33.71 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=22.2
Q ss_pred HHHHHHhhHhHHHHHhheecceeeeccc
Q 016582 224 LVEYFKMALDCFFAVWFVVGNVWIFGGH 251 (387)
Q Consensus 224 l~~~~~~~Lt~Ff~vWfVvG~vWv~~~~ 251 (387)
+...|..+.+++.+.|++-=.+|.++..
T Consensus 189 v~~~F~~l~~~~vvLWl~YPivW~ig~~ 216 (285)
T COG5524 189 VRSLFLTLRNYTVVLWLGYPIVWLIGPG 216 (285)
T ss_pred HHHHHHHHHHHHHHHHHhccceeEEccc
Confidence 3445777888999999998889999654
No 43
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=25.80 E-value=69 Score=36.33 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=9.9
Q ss_pred cHHhhccCCceeeecc
Q 016582 309 TAESIDALPTYKFKLK 324 (387)
Q Consensus 309 S~e~I~~LP~~KFk~~ 324 (387)
+.++|+.|....|+..
T Consensus 192 ~~~qi~~l~~~ny~~~ 207 (806)
T PF05478_consen 192 TPQQIDHLLVQNYSEL 207 (806)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4456777776666544
No 44
>PRK10527 hypothetical protein; Provisional
Probab=25.69 E-value=87 Score=27.80 Aligned_cols=26 Identities=27% Similarity=0.613 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHh------hHHHHHhHhhh
Q 016582 263 LCIVFLAISCIGYAM------PFILCATICCC 288 (387)
Q Consensus 263 L~ivfLaf~~I~yal------p~Li~iaiCcc 288 (387)
+..++++.++|+.++ ||++.++.||.
T Consensus 9 lG~~~~~LG~iGi~LPlLPTTPFlLLAa~cfa 40 (125)
T PRK10527 9 IGWLAVVLGTLGVVLPLLPTTPFILLAAWCFA 40 (125)
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 455677778888887 47787877764
No 45
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=25.61 E-value=84 Score=25.02 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=20.3
Q ss_pred ChhhHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhHHHhhhcchhh
Q 016582 258 PNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDL 302 (387)
Q Consensus 258 P~LY~L~ivfLaf~~I~yalp~Li~iaiCccLPcIiaiL~~~e~~ 302 (387)
+|++|++++|.++ |. +..-..||-|..++..|...
T Consensus 11 sQ~~Wl~i~f~~l----y~------l~s~~iLPri~~~l~~R~~~ 45 (67)
T MTH00169 11 TQYIWTLIILFFL----FS------LLVNYILPKIQQQLVIRTKG 45 (67)
T ss_pred HHHHHHHHHHHHH----HH------HHHHHHHHHHHHHHHHHHHH
Confidence 4678888777553 22 12233467777777665543
No 46
>PF13994 PgaD: PgaD-like protein
Probab=25.31 E-value=77 Score=28.05 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=14.0
Q ss_pred hccccHHhhccCCceeeeccCC
Q 016582 305 TRGATAESIDALPTYKFKLKKS 326 (387)
Q Consensus 305 ~rGAS~e~I~~LP~~KFk~~~~ 326 (387)
.-+++++++.+|-+.|-.....
T Consensus 109 ~f~l~~~~l~~lr~~k~~~V~~ 130 (138)
T PF13994_consen 109 SFGLSPEQLQQLRQAKVLTVHH 130 (138)
T ss_pred HcCCCHHHHHHHHhCCeEEEEe
Confidence 3366777777777666665543
No 47
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.31 E-value=27 Score=36.06 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=17.5
Q ss_pred CCceecccccchhhhhhhcCCCCc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLS 380 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~ 380 (387)
+-.||-|||++=.| .-.|||.|.
T Consensus 289 ~gkeCVIClse~rd-t~vLPCRHL 311 (349)
T KOG4265|consen 289 SGKECVICLSESRD-TVVLPCRHL 311 (349)
T ss_pred CCCeeEEEecCCcc-eEEecchhh
Confidence 34689999998733 457999994
No 48
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=22.33 E-value=1.6e+02 Score=28.87 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=50.4
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhhheeeec-cCCCCCCchhhhHHHhhhhhhhhhceeEEEeeeecc
Q 016582 99 RSPLNSGLWISVELVLTLSQVVSAVVVLSVF-RHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQ 165 (387)
Q Consensus 99 ~~p~nS~~wI~lelv~nlaqIvaaivVL~lS-r~E~P~~PLr~WIvGYa~gCv~~lpll~~ryr~rn~ 165 (387)
.=|-..-|-..+-.++.++..+.++.-+.+. |+-+--.|+.-||.+.-+-..+.+.+.+..|...|.
T Consensus 39 yL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih~~i~~vl~l~~~~~~~~~~~y~~~n~ 106 (295)
T PF06814_consen 39 YLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIHYLILAVLILKMLELAFWFIYYHYINK 106 (295)
T ss_pred CCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344455667777788888887777776666 344557899999999999888888888888877764
No 49
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=22.22 E-value=37 Score=41.59 Aligned_cols=30 Identities=10% Similarity=0.012 Sum_probs=23.7
Q ss_pred CCCceecccccch--hhhhhhcCCCCcccccc
Q 016582 356 GEDAVCFCWTAGF--NHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~Y--GeELR~LPC~H~FHv~h 385 (387)
..|+.|-||..+- -.---.|-|+|.||--+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC 3515 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQC 3515 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHH
Confidence 4578999999888 45667788999999643
No 50
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.21 E-value=9.6e+02 Score=29.51 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=29.3
Q ss_pred cCcchhHHHHHHHhhHhHHHHHhheecceeeeccc
Q 016582 217 LSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGH 251 (387)
Q Consensus 217 ~~~R~~~l~~~~~~~Lt~Ff~vWfVvG~vWv~~~~ 251 (387)
...|+......+.+.++++-++-|++|++.-+.+.
T Consensus 851 l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~ 885 (1381)
T KOG3614|consen 851 LPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPI 885 (1381)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCc
Confidence 34567778888999999999999999999888663
No 51
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=22.07 E-value=1.8e+02 Score=26.86 Aligned_cols=11 Identities=9% Similarity=0.305 Sum_probs=6.5
Q ss_pred hhccccHHhhc
Q 016582 304 QTRGATAESID 314 (387)
Q Consensus 304 ~~rGAS~e~I~ 314 (387)
+..|+++++++
T Consensus 61 ~~~gls~~e~~ 71 (199)
T PF10112_consen 61 KEAGLSDREYE 71 (199)
T ss_pred hhcCCChhHHH
Confidence 34577776653
No 52
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.82 E-value=39 Score=33.81 Aligned_cols=28 Identities=14% Similarity=-0.022 Sum_probs=20.4
Q ss_pred ccCCCCceecccccchhhhhhhcCCCCcc
Q 016582 353 VISGEDAVCFCWTAGFNHEFRYLVIDLSI 381 (387)
Q Consensus 353 ~ls~EDaeCcICLs~YGeELR~LPC~H~F 381 (387)
.++.-|..|.||+..- +..--.||+|.|
T Consensus 210 fip~~d~kC~lC~e~~-~~ps~t~CgHlF 237 (271)
T COG5574 210 FIPLADYKCFLCLEEP-EVPSCTPCGHLF 237 (271)
T ss_pred cccccccceeeeeccc-CCcccccccchh
Confidence 3444588999999875 334567999987
No 53
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=21.49 E-value=91 Score=23.47 Aligned_cols=14 Identities=43% Similarity=0.854 Sum_probs=7.9
Q ss_pred HhHhhhhhhHHHhh
Q 016582 283 ATICCCLPCIVSIL 296 (387)
Q Consensus 283 iaiCccLPcIiaiL 296 (387)
+.+|..|-|||.+|
T Consensus 38 ilicllli~iivml 51 (52)
T TIGR01294 38 ILICLLLICIIVML 51 (52)
T ss_pred HHHHHHHHHHHHHh
Confidence 34555666676543
No 54
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.04 E-value=88 Score=25.51 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=15.8
Q ss_pred HHHhhhcchhhhhhccccHHhhccCC
Q 016582 292 IVSILGLREDLAQTRGATAESIDALP 317 (387)
Q Consensus 292 IiaiL~~~e~~~~~rGAS~e~I~~LP 317 (387)
+-.+|.|+..-...+|+|+++-++|-
T Consensus 20 ~wl~lHY~~k~~~~~~ls~~d~~~L~ 45 (75)
T TIGR02976 20 LWLILHYRSKRKTAASLSTDDQALLQ 45 (75)
T ss_pred HHHHHHHHhhhccCCCCCHHHHHHHH
Confidence 33455554333455788998877763
No 55
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=20.53 E-value=1e+02 Score=23.25 Aligned_cols=14 Identities=43% Similarity=0.854 Sum_probs=8.0
Q ss_pred HhHhhhhhhHHHhh
Q 016582 283 ATICCCLPCIVSIL 296 (387)
Q Consensus 283 iaiCccLPcIiaiL 296 (387)
+.+|..|-|||.+|
T Consensus 38 ilicllli~iiv~l 51 (52)
T PF04272_consen 38 ILICLLLICIIVML 51 (52)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 34555666676553
No 56
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=20.52 E-value=1.2e+02 Score=25.00 Aligned_cols=22 Identities=36% Similarity=0.794 Sum_probs=16.5
Q ss_pred CCChhhH--HHHHHHHHHHHHHHh
Q 016582 256 DAPNLYR--LCIVFLAISCIGYAM 277 (387)
Q Consensus 256 daP~LY~--L~ivfLaf~~I~yal 277 (387)
|--|||. +|+|||+.+.+-|.+
T Consensus 46 DlnQlYTl~FClWFLlLGaiEy~v 69 (82)
T PF06643_consen 46 DLNQLYTLVFCLWFLLLGAIEYFV 69 (82)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4557776 699999998876654
Done!