Query 016582
Match_columns 387
No_of_seqs 228 out of 426
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 98.8 1.2E-09 4.2E-14 87.7 1.4 56 303-385 12-69 (91)
2 1x4j_A Ring finger protein 38; 98.7 3.3E-09 1.1E-13 81.7 0.7 49 309-385 2-52 (75)
3 1iym_A EL5; ring-H2 finger, ub 97.6 1.1E-05 3.6E-10 57.9 0.7 28 357-384 4-34 (55)
4 2ect_A Ring finger protein 126 97.6 1.5E-05 5.1E-10 61.2 1.4 30 356-385 13-44 (78)
5 2kiz_A E3 ubiquitin-protein li 97.6 1.7E-05 5.8E-10 59.5 1.2 29 356-384 12-42 (69)
6 2ep4_A Ring finger protein 24; 97.5 2E-05 6.7E-10 59.9 0.9 29 356-384 13-43 (74)
7 2ecm_A Ring finger and CHY zin 97.3 5E-05 1.7E-09 54.2 0.5 28 357-384 4-34 (55)
8 2d8s_A Cellular modulator of i 97.2 8.7E-05 3E-09 58.9 1.0 29 356-385 13-48 (80)
9 1v87_A Deltex protein 2; ring- 97.1 9.5E-05 3.2E-09 60.6 1.0 29 357-385 24-69 (114)
10 3dpl_R Ring-box protein 1; ubi 97.1 0.00011 3.7E-09 61.3 0.7 29 357-385 36-81 (106)
11 1chc_A Equine herpes virus-1 r 96.9 0.00015 5E-09 54.0 0.3 30 356-385 3-32 (68)
12 2ea6_A Ring finger protein 4; 96.7 0.00052 1.8E-08 50.7 1.8 29 356-384 13-47 (69)
13 3ng2_A RNF4, snurf, ring finge 96.7 0.00046 1.6E-08 51.5 1.4 29 356-384 8-42 (71)
14 2xeu_A Ring finger protein 4; 96.6 0.00053 1.8E-08 49.9 1.3 28 357-384 2-35 (64)
15 2ecl_A Ring-box protein 2; RNF 96.5 0.00031 1.1E-08 55.0 -0.5 25 360-384 28-55 (81)
16 2ct2_A Tripartite motif protei 96.4 0.00097 3.3E-08 51.6 1.5 30 356-385 13-45 (88)
17 2ecn_A Ring finger protein 141 96.3 0.0011 3.8E-08 49.5 1.3 28 356-385 13-40 (70)
18 2ecj_A Tripartite motif-contai 96.3 0.0016 5.6E-08 46.5 2.0 28 356-384 13-40 (58)
19 4a0k_B E3 ubiquitin-protein li 96.0 0.0012 4.3E-08 56.0 0.3 29 357-385 47-92 (117)
20 2egp_A Tripartite motif-contai 95.6 0.0042 1.4E-07 47.1 1.9 28 356-384 10-37 (79)
21 2d8t_A Dactylidin, ring finger 95.6 0.0031 1.1E-07 47.5 1.0 28 356-384 13-40 (71)
22 2ecv_A Tripartite motif-contai 95.6 0.0053 1.8E-07 46.7 2.3 29 356-385 17-45 (85)
23 2csy_A Zinc finger protein 183 95.4 0.0044 1.5E-07 47.7 1.3 28 356-384 13-40 (81)
24 1e4u_A Transcriptional repress 95.4 0.0051 1.8E-07 48.3 1.7 29 356-384 9-40 (78)
25 2djb_A Polycomb group ring fin 95.2 0.0044 1.5E-07 46.7 0.8 30 356-385 13-42 (72)
26 2ecw_A Tripartite motif-contai 95.2 0.0049 1.7E-07 46.9 0.9 28 356-384 17-44 (85)
27 1g25_A CDK-activating kinase a 95.1 0.0041 1.4E-07 45.9 0.3 28 357-384 2-33 (65)
28 2yur_A Retinoblastoma-binding 95.1 0.0057 1.9E-07 46.6 1.0 29 356-385 13-42 (74)
29 1bor_A Transcription factor PM 95.0 0.0077 2.6E-07 43.7 1.5 28 357-385 5-32 (56)
30 2ecy_A TNF receptor-associated 95.0 0.0065 2.2E-07 45.0 1.1 28 356-384 13-40 (66)
31 2ysj_A Tripartite motif-contai 94.7 0.012 4.1E-07 43.0 1.8 28 356-384 18-45 (63)
32 1wim_A KIAA0161 protein; ring 94.6 0.0078 2.7E-07 47.9 0.7 27 357-383 4-32 (94)
33 2ysl_A Tripartite motif-contai 94.5 0.013 4.4E-07 43.8 1.7 28 356-384 18-45 (73)
34 4ap4_A E3 ubiquitin ligase RNF 94.3 0.0099 3.4E-07 48.8 0.7 29 356-384 70-104 (133)
35 3lrq_A E3 ubiquitin-protein li 94.1 0.0061 2.1E-07 49.2 -1.0 29 357-385 21-49 (100)
36 2y43_A E3 ubiquitin-protein li 94.0 0.0063 2.2E-07 48.6 -1.0 29 357-385 21-49 (99)
37 2ckl_A Polycomb group ring fin 93.4 0.013 4.3E-07 47.6 -0.3 29 357-385 14-42 (108)
38 2ckl_B Ubiquitin ligase protei 93.2 0.0086 3E-07 52.2 -1.7 29 357-385 53-81 (165)
39 1jm7_A BRCA1, breast cancer ty 93.0 0.014 4.6E-07 47.2 -0.6 28 357-385 20-47 (112)
40 4ayc_A E3 ubiquitin-protein li 92.8 0.014 5E-07 49.5 -0.8 28 357-385 52-79 (138)
41 2vje_A E3 ubiquitin-protein li 91.4 0.02 6.9E-07 42.8 -1.4 26 357-382 7-33 (64)
42 1vyx_A ORF K3, K3RING; zinc-bi 91.1 0.067 2.3E-06 39.9 1.3 27 357-384 5-36 (60)
43 3ztg_A E3 ubiquitin-protein li 91.1 0.069 2.4E-06 41.7 1.4 28 356-384 11-39 (92)
44 3k1l_B Fancl; UBC, ring, RWD, 90.8 0.073 2.5E-06 53.3 1.5 122 106-251 79-213 (381)
45 1t1h_A Gspef-atpub14, armadill 90.8 0.044 1.5E-06 41.5 -0.1 28 356-384 6-33 (78)
46 2ea5_A Cell growth regulator w 90.0 0.11 3.9E-06 39.3 1.7 29 354-383 11-40 (68)
47 1z6u_A NP95-like ring finger p 89.5 0.048 1.6E-06 47.4 -0.9 28 357-385 77-104 (150)
48 3l11_A E3 ubiquitin-protein li 89.5 0.046 1.6E-06 44.6 -0.9 29 356-385 13-41 (115)
49 2ct0_A Non-SMC element 1 homol 89.5 0.099 3.4E-06 40.9 1.0 27 357-385 14-42 (74)
50 1rmd_A RAG1; V(D)J recombinati 89.4 0.05 1.7E-06 44.5 -0.9 27 357-384 22-48 (116)
51 1jm7_B BARD1, BRCA1-associated 88.6 0.099 3.4E-06 43.0 0.4 29 357-385 21-49 (117)
52 3fl2_A E3 ubiquitin-protein li 88.5 0.059 2E-06 44.6 -1.0 28 357-385 51-78 (124)
53 3hct_A TNF receptor-associated 88.3 0.094 3.2E-06 43.2 0.1 27 357-384 17-43 (118)
54 2ecg_A Baculoviral IAP repeat- 87.4 0.093 3.2E-06 39.9 -0.4 26 357-383 24-50 (75)
55 4ic3_A E3 ubiquitin-protein li 86.1 0.11 3.9E-06 39.5 -0.6 26 357-383 23-49 (74)
56 2y1n_A E3 ubiquitin-protein li 84.8 0.18 6E-06 50.9 -0.0 27 358-385 332-358 (389)
57 3knv_A TNF receptor-associated 81.4 0.31 1.1E-05 41.9 0.1 28 356-384 29-56 (141)
58 2vje_B MDM4 protein; proto-onc 78.5 0.23 7.9E-06 36.8 -1.4 23 358-380 7-30 (63)
59 2yho_A E3 ubiquitin-protein li 75.9 0.43 1.5E-05 37.0 -0.6 23 357-380 17-39 (79)
60 2c2l_A CHIP, carboxy terminus 64.4 1.7 5.9E-05 39.6 0.6 26 356-382 206-231 (281)
61 1wgm_A Ubiquitin conjugation f 63.7 3.4 0.00011 33.2 2.2 26 356-382 20-46 (98)
62 2kr4_A Ubiquitin conjugation f 63.4 1.9 6.4E-05 33.6 0.6 26 356-382 12-37 (85)
63 2yu4_A E3 SUMO-protein ligase 62.0 2 6.8E-05 34.0 0.5 26 356-382 5-31 (94)
64 3htk_C E3 SUMO-protein ligase 60.2 2.1 7.1E-05 41.2 0.4 27 356-382 179-205 (267)
65 2kre_A Ubiquitin conjugation f 58.7 2.1 7.3E-05 34.6 0.1 26 356-382 27-52 (100)
66 3t6p_A Baculoviral IAP repeat- 57.3 2.5 8.5E-05 41.7 0.4 29 356-385 293-322 (345)
67 2f42_A STIP1 homology and U-bo 39.3 6.3 0.00022 35.5 0.0 25 356-381 104-128 (179)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.78 E-value=1.2e-09 Score=87.74 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=45.6
Q ss_pred hhhccccHHhhccCCceeeeccCCCCCCCCCCCCCCCCCceeccCCccccccCCCCceecccccch--hhhhhhcCCCCc
Q 016582 303 AQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAGF--NHEFRYLVIDLS 380 (387)
Q Consensus 303 ~~~rGAS~e~I~~LP~~KFk~~~~~~~~~~~~~~~~~~gg~~~~~t~~Er~ls~EDaeCcICLs~Y--GeELR~LPC~H~ 380 (387)
...+|+|++.|++||.++|+..... ..++.+|.||+.+| |+.++.|||+|.
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~---------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~ 64 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGA---------------------------VGQEMCCPICCSEYVKGDVATELPCHHY 64 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSS---------------------------SSSCSEETTTTEECCTTCEEEEETTTEE
T ss_pred cCCCCCCHHHHHhCCCeeecccccc---------------------------cCCCCCCcccChhhcCCCcEEecCCCCh
Confidence 3578999999999999999764321 12566899999999 889999999999
Q ss_pred ccccc
Q 016582 381 IFVYH 385 (387)
Q Consensus 381 FHv~h 385 (387)
||..+
T Consensus 65 Fh~~C 69 (91)
T 2l0b_A 65 FHKPC 69 (91)
T ss_dssp EEHHH
T ss_pred HHHHH
Confidence 99653
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=3.3e-09 Score=81.70 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=39.7
Q ss_pred cHHhhccCCceeeeccCCCCCCCCCCCCCCCCCceeccCCccccccCCCCceecccccch--hhhhhhcCCCCcccccc
Q 016582 309 TAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCFCWTAGF--NHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 309 S~e~I~~LP~~KFk~~~~~~~~~~~~~~~~~~gg~~~~~t~~Er~ls~EDaeCcICLs~Y--GeELR~LPC~H~FHv~h 385 (387)
|.+.|++||+++|+..+.. .++.+|.||+.+| ++.++.|||+|.||...
T Consensus 2 s~~~i~~lp~~~~~~~~~~----------------------------~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~C 52 (75)
T 1x4j_A 2 SSGSSGQLPSYRFNPNNHQ----------------------------SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKC 52 (75)
T ss_dssp CCCCCSSCCCEEBCSSSCS----------------------------SSCCEETTTTEECCBTCEEEEETTTEEEETTH
T ss_pred cHhhHhhCCcEEecCcccc----------------------------CCCCCCeECCcccCCCCeEEEECCCCHhHHHH
Confidence 5678999999999864321 2456899999999 78899999999999753
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.62 E-value=1.1e-05 Score=57.91 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=24.8
Q ss_pred CCceecccccch--hhhhhhcC-CCCccccc
Q 016582 357 EDAVCFCWTAGF--NHEFRYLV-IDLSIFVY 384 (387)
Q Consensus 357 EDaeCcICLs~Y--GeELR~LP-C~H~FHv~ 384 (387)
++.+|.||+++| |++++.|| |+|.||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~ 34 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAE 34 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTT
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHH
Confidence 566899999999 88899999 99999964
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.60 E-value=1.5e-05 Score=61.21 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=25.9
Q ss_pred CCCceecccccch--hhhhhhcCCCCcccccc
Q 016582 356 GEDAVCFCWTAGF--NHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~Y--GeELR~LPC~H~FHv~h 385 (387)
.++.+|.||+..| ++.++.|||+|.||...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~C 44 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSC 44 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTT
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHH
Confidence 4677899999999 67889999999999754
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.57 E-value=1.7e-05 Score=59.50 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=25.3
Q ss_pred CCCceecccccch--hhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGF--NHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~Y--GeELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..| ++.++.|||+|.||..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~ 42 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQV 42 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHH
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHH
Confidence 3567899999999 7889999999999964
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=2e-05 Score=59.94 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=25.4
Q ss_pred CCCceecccccch--hhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGF--NHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~Y--GeELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..| ++.++.|||+|.||..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~ 43 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRK 43 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHH
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHH
Confidence 3567899999999 7889999999999964
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.27 E-value=5e-05 Score=54.19 Aligned_cols=28 Identities=7% Similarity=-0.087 Sum_probs=23.5
Q ss_pred CCceecccccch---hhhhhhcCCCCccccc
Q 016582 357 EDAVCFCWTAGF---NHEFRYLVIDLSIFVY 384 (387)
Q Consensus 357 EDaeCcICLs~Y---GeELR~LPC~H~FHv~ 384 (387)
++.+|.||++.| ++..+.|||+|.||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~ 34 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRT 34 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETT
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHH
Confidence 456899999999 3568899999999864
No 8
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=8.7e-05 Score=58.89 Aligned_cols=29 Identities=3% Similarity=-0.047 Sum_probs=24.0
Q ss_pred CCCceecccccch--hhhhhhcCCC-----Ccccccc
Q 016582 356 GEDAVCFCWTAGF--NHEFRYLVID-----LSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~Y--GeELR~LPC~-----H~FHv~h 385 (387)
.++.+|.|||++| ++.| .+||+ |.||...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~C 48 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQAC 48 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTH
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHH
Confidence 4667899999999 6777 69997 9999754
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.14 E-value=9.5e-05 Score=60.62 Aligned_cols=29 Identities=7% Similarity=0.049 Sum_probs=22.2
Q ss_pred CCceecccccch--hh---------------hhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGF--NH---------------EFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~Y--Ge---------------ELR~LPC~H~FHv~h 385 (387)
+|.+|+|||+.| ++ .++.|||+|.||..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~C 69 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLC 69 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHH
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHH
Confidence 456899999999 32 344789999999653
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.07 E-value=0.00011 Score=61.26 Aligned_cols=29 Identities=7% Similarity=-0.003 Sum_probs=22.5
Q ss_pred CCceecccccch-hh----------------hhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGF-NH----------------EFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~Y-Ge----------------ELR~LPC~H~FHv~h 385 (387)
++.+|+||+..| +. .++.|||+|.||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~C 81 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC 81 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHH
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHH
Confidence 566899999998 22 267799999999753
No 11
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.94 E-value=0.00015 Score=54.04 Aligned_cols=30 Identities=7% Similarity=-0.208 Sum_probs=24.4
Q ss_pred CCCceecccccchhhhhhhcCCCCcccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
.++.+|.||+..|.+..+.|||+|.||...
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~C 32 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVC 32 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTH
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHH
Confidence 356689999999966668899999998653
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=0.00052 Score=50.70 Aligned_cols=29 Identities=7% Similarity=-0.015 Sum_probs=22.8
Q ss_pred CCCceecccccch-hh-----hhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGF-NH-----EFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~Y-Ge-----ELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..| .. .+..|||+|.||..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~ 47 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 47 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHH
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHH
Confidence 4677899999999 32 23778999999864
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.70 E-value=0.00046 Score=51.48 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=23.1
Q ss_pred CCCceecccccchhh------hhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNH------EFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGe------ELR~LPC~H~FHv~ 384 (387)
.++.+|.||++.|.+ .+..+||+|.||..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~ 42 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 42 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHH
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHH
Confidence 466789999999932 34789999999864
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.63 E-value=0.00053 Score=49.89 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=22.2
Q ss_pred CCceecccccch-h-----hhhhhcCCCCccccc
Q 016582 357 EDAVCFCWTAGF-N-----HEFRYLVIDLSIFVY 384 (387)
Q Consensus 357 EDaeCcICLs~Y-G-----eELR~LPC~H~FHv~ 384 (387)
++.+|.||++.| . +.+..+||+|.||..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~ 35 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 35 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHH
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHH
Confidence 567899999999 2 234788999999864
No 15
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.00031 Score=54.97 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=17.8
Q ss_pred eecccccch--hhhhhhcC-CCCccccc
Q 016582 360 VCFCWTAGF--NHEFRYLV-IDLSIFVY 384 (387)
Q Consensus 360 eCcICLs~Y--GeELR~LP-C~H~FHv~ 384 (387)
.|.||+++| ++.++.|| |+|.||..
T Consensus 28 ~C~iC~~~~~~~~~~~~~~~C~H~FH~~ 55 (81)
T 2ecl_A 28 ACLRCQAENKQEDCVVVWGECNHSFHNC 55 (81)
T ss_dssp CCTTHHHHTCTTTCCEEEETTSCEEEHH
T ss_pred cCcccccccCCCceEEEeCCCCCccChH
Confidence 355555555 45588887 99999974
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.39 E-value=0.00097 Score=51.63 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=23.8
Q ss_pred CCCceecccccch-hhh--hhhcCCCCcccccc
Q 016582 356 GEDAVCFCWTAGF-NHE--FRYLVIDLSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~Y-GeE--LR~LPC~H~FHv~h 385 (387)
.++.+|.||+..| .++ .+.|||+|.||..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~C 45 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQC 45 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHH
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHH
Confidence 4567899999999 333 78899999998643
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.29 E-value=0.0011 Score=49.52 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=22.9
Q ss_pred CCCceecccccchhhhhhhcCCCCcccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
.++.+|.||+..|.+ ..|||+|.||...
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~CgH~fc~~C 40 (70)
T 2ecn_A 13 TDEEECCICMDGRAD--LILPCAHSFCQKC 40 (70)
T ss_dssp CCCCCCSSSCCSCCS--EEETTTEEECHHH
T ss_pred CCCCCCeeCCcCccC--cccCCCCcccHHH
Confidence 356789999999944 7899999998643
No 18
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.26 E-value=0.0016 Score=46.54 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=21.8
Q ss_pred CCCceecccccchhhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..|.+. ..|||+|.||..
T Consensus 13 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~ 40 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP-VIIECGHNFCKA 40 (58)
T ss_dssp CCCCBCSSSCCBCSSC-CCCSSCCCCCHH
T ss_pred ccCCCCccCCcccCcc-EeCCCCCccCHH
Confidence 4667899999999332 448999999864
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.99 E-value=0.0012 Score=56.03 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=1.1
Q ss_pred CCceecccccch-h--------------h--hhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGF-N--------------H--EFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~Y-G--------------e--ELR~LPC~H~FHv~h 385 (387)
++..|+||+.+| . + .+..+||+|.||..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~C 92 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC 92 (117)
T ss_dssp CC--------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHH
Confidence 566899999999 3 1 233468999999754
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=95.63 E-value=0.0042 Score=47.13 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=21.7
Q ss_pred CCCceecccccchhhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..|.+- ..|||+|.|+..
T Consensus 10 ~~~~~C~IC~~~~~~p-~~l~CgH~fC~~ 37 (79)
T 2egp_A 10 QEEVTCPICLELLTEP-LSLDCGHSLCRA 37 (79)
T ss_dssp CCCCEETTTTEECSSC-CCCSSSCCCCHH
T ss_pred ccCCCCcCCCcccCCe-eECCCCCHHHHH
Confidence 3677899999999332 348999999854
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.60 E-value=0.0031 Score=47.47 Aligned_cols=28 Identities=11% Similarity=-0.094 Sum_probs=21.7
Q ss_pred CCCceecccccchhhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..|.+. ..|||+|.||..
T Consensus 13 ~~~~~C~IC~~~~~~~-~~~~CgH~fC~~ 40 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP-VSLPCKHVFCYL 40 (71)
T ss_dssp SSCCBCSSSSSBCSSE-EEETTTEEEEHH
T ss_pred CCCCCCccCCcccCCC-EEccCCCHHHHH
Confidence 3567899999999332 557999999864
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.58 E-value=0.0053 Score=46.75 Aligned_cols=29 Identities=14% Similarity=0.001 Sum_probs=22.2
Q ss_pred CCCceecccccchhhhhhhcCCCCcccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
.++.+|.||+..|.+. ..|||+|.||..+
T Consensus 17 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~C 45 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP-LSLDCGHSFCQAC 45 (85)
T ss_dssp CCCCCCTTTCSCCSSC-BCCSSSCCBCTTH
T ss_pred cCCCCCCCCCcccCCc-eeCCCCCHHHHHH
Confidence 4677899999999432 4579999998643
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.42 E-value=0.0044 Score=47.73 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=21.5
Q ss_pred CCCceecccccchhhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..|.+-+ .+||+|.||..
T Consensus 13 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~ 40 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPV-VTKCRHYFCES 40 (81)
T ss_dssp CCCSBCSSSCSBCCSEE-ECTTSCEEEHH
T ss_pred CCCCCCcCCCchhcCee-EccCCCHhHHH
Confidence 35678999999993333 48999999864
No 24
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=95.42 E-value=0.0051 Score=48.26 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=23.7
Q ss_pred CCCceecccccch-hhhhhhcC--CCCccccc
Q 016582 356 GEDAVCFCWTAGF-NHEFRYLV--IDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~Y-GeELR~LP--C~H~FHv~ 384 (387)
.++.+|.||++.+ -++.+.+| |+|.|...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~ 40 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRF 40 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHH
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHH
Confidence 4678899999999 66677777 99999754
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.23 E-value=0.0044 Score=46.74 Aligned_cols=30 Identities=3% Similarity=-0.187 Sum_probs=23.4
Q ss_pred CCCceecccccchhhhhhhcCCCCcccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
.++.+|.||+..|.+.+..+||+|.||...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~C 42 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSC 42 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHH
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHH
Confidence 456789999999955555569999998643
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.17 E-value=0.0049 Score=46.95 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=21.9
Q ss_pred CCCceecccccchhhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..|.+.+ .|||+|.||..
T Consensus 17 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~ 44 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV-SADCNHSFCRA 44 (85)
T ss_dssp CTTTSCTTTCSCCSSCE-ECTTSCCBCHH
T ss_pred ccCCCCcCCChhhCcce-eCCCCCHHHHH
Confidence 46778999999994333 58999999854
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.11 E-value=0.0041 Score=45.90 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=21.0
Q ss_pred CCceeccccc-ch-hhhh--hhcCCCCccccc
Q 016582 357 EDAVCFCWTA-GF-NHEF--RYLVIDLSIFVY 384 (387)
Q Consensus 357 EDaeCcICLs-~Y-GeEL--R~LPC~H~FHv~ 384 (387)
|+.+|.||+. .| +... ..+||+|.|+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~ 33 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCES 33 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHH
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHH
Confidence 5668999999 66 4432 468999999864
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=95.09 E-value=0.0057 Score=46.56 Aligned_cols=29 Identities=7% Similarity=0.031 Sum_probs=22.4
Q ss_pred CCCceecccccchhhhhhhcC-CCCcccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLV-IDLSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LP-C~H~FHv~h 385 (387)
.++..|.||+..|.+.+. || |+|.||...
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~C 42 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVV-IPCCGNSYCDEC 42 (74)
T ss_dssp CGGGSCSSSCCCCTTCEE-CSSSCCEECTTH
T ss_pred CCCCCCcCCChHHhCCeE-cCCCCCHHHHHH
Confidence 467789999999944333 99 999998653
No 29
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.01 E-value=0.0077 Score=43.70 Aligned_cols=28 Identities=11% Similarity=-0.121 Sum_probs=22.2
Q ss_pred CCceecccccchhhhhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
++..|.||+..|.+ -+.|||+|.|+...
T Consensus 5 ~~~~C~IC~~~~~~-p~~l~CgH~fC~~C 32 (56)
T 1bor_A 5 QFLRCQQCQAEAKC-PKLLPCLHTLCSGC 32 (56)
T ss_dssp CCSSCSSSCSSCBC-CSCSTTSCCSBTTT
T ss_pred cCCCceEeCCccCC-eEEcCCCCcccHHH
Confidence 56689999999933 26799999998654
No 30
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.00 E-value=0.0065 Score=44.96 Aligned_cols=28 Identities=4% Similarity=-0.172 Sum_probs=21.8
Q ss_pred CCCceecccccchhhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..|.+-+. +||+|.||..
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~ 40 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ-TECGHRFCES 40 (66)
T ss_dssp CCCEECTTTCCEESSCCC-CSSSCCCCHH
T ss_pred CcCCCCCCCChHhcCeeE-CCCCCHHHHH
Confidence 467899999999943333 8999999864
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.67 E-value=0.012 Score=43.00 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=21.7
Q ss_pred CCCceecccccchhhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..|.+- ..|||+|.||..
T Consensus 18 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~ 45 (63)
T 2ysj_A 18 QEEVICPICLDILQKP-VTIDCGHNFCLK 45 (63)
T ss_dssp CCCCBCTTTCSBCSSC-EECTTSSEECHH
T ss_pred ccCCCCCcCCchhCCe-EEeCCCCcchHH
Confidence 4678899999999432 346999999864
No 32
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.63 E-value=0.0078 Score=47.86 Aligned_cols=27 Identities=4% Similarity=0.053 Sum_probs=21.3
Q ss_pred CCceecccccch-hhhhhhc-CCCCcccc
Q 016582 357 EDAVCFCWTAGF-NHEFRYL-VIDLSIFV 383 (387)
Q Consensus 357 EDaeCcICLs~Y-GeELR~L-PC~H~FHv 383 (387)
++.+|.||+..| +.+...| ||+|.|-.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~ 32 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCT 32 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccH
Confidence 456899999999 6666554 79999864
No 33
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.53 E-value=0.013 Score=43.81 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=21.6
Q ss_pred CCCceecccccchhhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..|.+. ..|||+|.||..
T Consensus 18 ~~~~~C~IC~~~~~~~-~~~~CgH~fC~~ 45 (73)
T 2ysl_A 18 QEEVICPICLDILQKP-VTIDCGHNFCLK 45 (73)
T ss_dssp CCCCBCTTTCSBCSSE-EECTTCCEEEHH
T ss_pred ccCCEeccCCcccCCe-EEcCCCChhhHH
Confidence 4677899999999432 346999999864
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.30 E-value=0.0099 Score=48.77 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=22.4
Q ss_pred CCCceecccccchhh------hhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNH------EFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGe------ELR~LPC~H~FHv~ 384 (387)
.++.+|.||+..|.+ ....+||+|.||..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~ 104 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 104 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHH
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHH
Confidence 456789999999922 23678999999975
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.10 E-value=0.0061 Score=49.20 Aligned_cols=29 Identities=10% Similarity=-0.069 Sum_probs=23.3
Q ss_pred CCceecccccchhhhhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
++..|.||+..|.+-+..+||+|.||..+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~C 49 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSC 49 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHH
T ss_pred CCCCCccCCccccCccccCCCCChhhHHH
Confidence 56789999999965565599999998643
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.04 E-value=0.0063 Score=48.56 Aligned_cols=29 Identities=10% Similarity=-0.096 Sum_probs=22.4
Q ss_pred CCceecccccchhhhhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
++.+|.||+..|.+.+..+||+|.||..+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~C 49 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLC 49 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHH
Confidence 45689999999955554469999998643
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=93.43 E-value=0.013 Score=47.61 Aligned_cols=29 Identities=10% Similarity=-0.024 Sum_probs=22.9
Q ss_pred CCceecccccchhhhhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
++..|.||+..|.+.+..+||+|.||..+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~C 42 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTC 42 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHH
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHH
Confidence 56789999999955566569999998643
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=93.21 E-value=0.0086 Score=52.18 Aligned_cols=29 Identities=3% Similarity=-0.087 Sum_probs=23.2
Q ss_pred CCceecccccchhhhhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
++..|.||+..|.+.+..+||+|.||..+
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~C 81 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADC 81 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHH
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHH
Confidence 45689999999965666679999998654
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.04 E-value=0.014 Score=47.16 Aligned_cols=28 Identities=7% Similarity=-0.077 Sum_probs=20.7
Q ss_pred CCceecccccchhhhhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
++.+|.||+..|.+-+ .+||+|.|+..+
T Consensus 20 ~~~~C~IC~~~~~~p~-~~~CgH~fC~~C 47 (112)
T 1jm7_A 20 KILECPICLELIKEPV-STKCDHIFCKFC 47 (112)
T ss_dssp HHTSCSSSCCCCSSCC-BCTTSCCCCSHH
T ss_pred CCCCCcccChhhcCeE-ECCCCCHHHHHH
Confidence 3457999999993333 389999998643
No 40
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=92.84 E-value=0.014 Score=49.53 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=21.1
Q ss_pred CCceecccccchhhhhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
++..|+||+..|-+ -..|||+|.||..+
T Consensus 52 ~~~~C~iC~~~~~~-~~~~~CgH~fc~~C 79 (138)
T 4ayc_A 52 NELQCIICSEYFIE-AVTLNCAHSFCSYC 79 (138)
T ss_dssp HHSBCTTTCSBCSS-EEEETTSCEEEHHH
T ss_pred ccCCCcccCcccCC-ceECCCCCCccHHH
Confidence 34579999999932 24689999998643
No 41
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=91.37 E-value=0.02 Score=42.77 Aligned_cols=26 Identities=8% Similarity=-0.184 Sum_probs=19.6
Q ss_pred CCceecccccch-hhhhhhcCCCCccc
Q 016582 357 EDAVCFCWTAGF-NHEFRYLVIDLSIF 382 (387)
Q Consensus 357 EDaeCcICLs~Y-GeELR~LPC~H~FH 382 (387)
++.+|.||++.. ..-+..|||+|.++
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~ 33 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMA 33 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhh
Confidence 456899999999 54444569999854
No 42
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=91.14 E-value=0.067 Score=39.93 Aligned_cols=27 Identities=11% Similarity=0.221 Sum_probs=19.9
Q ss_pred CCceecccccchhhhhhhcCCC--C---ccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVID--L---SIFVY 384 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~--H---~FHv~ 384 (387)
+..+|.||+++.+++| .+||+ | .||..
T Consensus 5 ~~~~CrIC~~~~~~~l-~~PC~C~gs~~~~H~~ 36 (60)
T 1vyx_A 5 DVPVCWICNEELGNER-FRACGCTGELENVHRS 36 (60)
T ss_dssp SCCEETTTTEECSCCC-CCSCCCSSGGGSCCHH
T ss_pred CCCEeEEeecCCCCce-ecCcCCCCchhhhHHH
Confidence 4568999999986677 69955 5 66643
No 43
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=91.10 E-value=0.069 Score=41.66 Aligned_cols=28 Identities=7% Similarity=0.033 Sum_probs=21.7
Q ss_pred CCCceecccccchhhhhhhcC-CCCccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLV-IDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LP-C~H~FHv~ 384 (387)
.++..|.||+..|.+- ..|| |+|.|+..
T Consensus 11 ~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~ 39 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA-VVIPCCGNSYCDE 39 (92)
T ss_dssp CTTTEETTTTEECSSC-EECTTTCCEECHH
T ss_pred CcCCCCCCCChhhcCc-eECCCCCCHHHHH
Confidence 4678999999998433 3689 99999754
No 44
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=90.81 E-value=0.073 Score=53.34 Aligned_cols=122 Identities=10% Similarity=0.151 Sum_probs=56.2
Q ss_pred chhhhHHHHHHHHHHHhhheeeeccCCCCCCchhhhHH------Hhhhhhhhhhcee-EEEeeeeccCCCCccccccccc
Q 016582 106 LWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIV------GYAAGCVATLPLL-YWRYRQSNQVSEPDSVQSRNSS 178 (387)
Q Consensus 106 ~wI~lelv~nlaqIvaaivVL~lSr~E~P~~PLr~WIv------GYa~gCv~~lpll-~~ryr~rn~~~~~~~~~~~q~~ 178 (387)
-|..-|++-+|+|+.-.-...-+.+++.++.-+..=|. +|-++|=-++-.+ +.+|..++.. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~l~~~~~~s~i~~~~f~~~~~h-----------~ 147 (381)
T 3k1l_B 79 DWLLEDFLDHLPKILPAQKAPTVPKELCREGNIYYDILALYKSNEYCLQVDEACSMIRFSEFTDFEQH-----------Y 147 (381)
T ss_dssp TCCHHHHHHHHHHHCC------------CCCCHHHHHHHHHSCSSCEEEECGGGCEEEEEEETTEEEE-----------E
T ss_pred chhHHHHHHhHHHhCCcccccccchhhcchhhHHHHHHHhcCccceEEEecCCccEEEeccccCccce-----------E
Confidence 39999999999999999888888888888665544333 3444443333322 1222111100 0
Q ss_pred ccCCCCCCCCccccc--CCCccccCccccccCCCCCCCCccCcchhHHHHHHHhhHhHHHHHhheecc----eeeeccc
Q 016582 179 ARLNAPAAPFSISVP--RTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGN----VWIFGGH 251 (387)
Q Consensus 179 ~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~Lt~Ff~vWfVvG~----vWv~~~~ 251 (387)
-.-+-+ .+.+. +-++-........ ....++..++..|..+|+-+=-+|=++.. .||....
T Consensus 148 Lel~~~----~~~v~~h~LP~~~~~~e~l~---------k~~ssL~~v~~qF~~~LE~Lq~FWd~LdeID~~~wVLEP~ 213 (381)
T 3k1l_B 148 LELKIP----SLLLLDHSLPDCVSLGEMLT---------KSAGNLEEALNLFRKLLEDLRPFYDNFMDIDELCHVLQPS 213 (381)
T ss_dssp EEEETT----TCCEEEESSCTTSCHHHHHH---------HHCCSHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCBSS
T ss_pred EEEecC----ceEEecccCCcchhHHHHhc---------CccccHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC
Confidence 000000 01100 0010000000000 02245788999999999999999998865 5999554
No 45
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=90.79 E-value=0.044 Score=41.51 Aligned_cols=28 Identities=7% Similarity=-0.165 Sum_probs=21.4
Q ss_pred CCCceecccccchhhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
.++..|.||+..|.+-+ .+||+|.|+..
T Consensus 6 ~~~~~C~IC~~~~~~Pv-~~~CgH~fc~~ 33 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV-IVSTGQTYERS 33 (78)
T ss_dssp SSSSSCTTTSCCCSSEE-EETTTEEEEHH
T ss_pred cccCCCCCccccccCCE-EcCCCCeecHH
Confidence 46678999999994433 37999998754
No 46
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.04 E-value=0.11 Score=39.28 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=21.3
Q ss_pred cCCCCceecccccchhhhhhhcCCCCc-ccc
Q 016582 354 ISGEDAVCFCWTAGFNHEFRYLVIDLS-IFV 383 (387)
Q Consensus 354 ls~EDaeCcICLs~YGeELR~LPC~H~-FHv 383 (387)
+..++.+|.||+...-+ ...|||+|. |-.
T Consensus 11 ~~~~~~~C~IC~~~~~~-~v~~pCgH~~~C~ 40 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN-WVLLPCRHTCLCD 40 (68)
T ss_dssp SCCCSSCCSSSSSSCCC-CEETTTTBCCSCT
T ss_pred cCCCCCCCCCcCcCCCC-EEEECCCChhhhH
Confidence 33467789999998732 566899998 543
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=89.54 E-value=0.048 Score=47.41 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=20.7
Q ss_pred CCceecccccchhhhhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
++..|.||+..|.+-+. |||+|.|+..+
T Consensus 77 ~~~~C~IC~~~~~~pv~-~~CgH~fC~~C 104 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT-TECFHNVCKDC 104 (150)
T ss_dssp HHTBCTTTSSBCSSEEE-CTTSCEEEHHH
T ss_pred cCCEeecCChhhcCCEE-cCCCCchhHHH
Confidence 34679999999933333 89999998643
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=89.54 E-value=0.046 Score=44.63 Aligned_cols=29 Identities=7% Similarity=-0.098 Sum_probs=21.9
Q ss_pred CCCceecccccchhhhhhhcCCCCcccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
.++..|.||+..|.+- ..|||+|.|+..+
T Consensus 13 ~~~~~C~iC~~~~~~p-~~~~CgH~fC~~C 41 (115)
T 3l11_A 13 LSECQCGICMEILVEP-VTLPCNHTLCKPC 41 (115)
T ss_dssp HHHHBCTTTCSBCSSC-EECTTSCEECHHH
T ss_pred CCCCCCccCCcccCce-eEcCCCCHHhHHH
Confidence 4577899999999432 3469999998653
No 49
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.45 E-value=0.099 Score=40.92 Aligned_cols=27 Identities=4% Similarity=0.092 Sum_probs=21.6
Q ss_pred CCceecccccch--hhhhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGF--NHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~Y--GeELR~LPC~H~FHv~h 385 (387)
.-.+|.||.+.+ |++-. -|+|.||.+.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~C~h~fH~~C 42 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--TCGIRMHLPC 42 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--SSCCEECHHH
T ss_pred CCCcCcchhhHcccCCccC--CCCchhhHHH
Confidence 346899999999 66544 8999999864
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=89.37 E-value=0.05 Score=44.50 Aligned_cols=27 Identities=4% Similarity=-0.071 Sum_probs=20.8
Q ss_pred CCceecccccchhhhhhhcCCCCccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
++..|.||+..|.+-+. +||+|.|+..
T Consensus 22 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~ 48 (116)
T 1rmd_A 22 KSISCQICEHILADPVE-TSCKHLFCRI 48 (116)
T ss_dssp HHTBCTTTCSBCSSEEE-CTTSCEEEHH
T ss_pred CCCCCCCCCcHhcCcEE-cCCCCcccHH
Confidence 45689999999944333 8999999864
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=88.56 E-value=0.099 Score=42.98 Aligned_cols=29 Identities=7% Similarity=-0.181 Sum_probs=21.9
Q ss_pred CCceecccccchhhhhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
++..|.||+..|.+-+...||+|.|+..+
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~C 49 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNC 49 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTT
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHH
Confidence 56789999999955444339999998644
No 52
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=88.46 E-value=0.059 Score=44.63 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=20.9
Q ss_pred CCceecccccchhhhhhhcCCCCcccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
++..|.||+..|.+- ..|||+|.|+..+
T Consensus 51 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~C 78 (124)
T 3fl2_A 51 ETFQCICCQELVFRP-ITTVCQHNVCKDC 78 (124)
T ss_dssp HHTBCTTTSSBCSSE-EECTTSCEEEHHH
T ss_pred cCCCCCcCChHHcCc-EEeeCCCcccHHH
Confidence 456899999999433 3469999998643
No 53
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=88.35 E-value=0.094 Score=43.19 Aligned_cols=27 Identities=4% Similarity=-0.123 Sum_probs=20.8
Q ss_pred CCceecccccchhhhhhhcCCCCccccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
++..|.||+..|.+- ..+||+|.|+..
T Consensus 17 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~ 43 (118)
T 3hct_A 17 SKYECPICLMALREA-VQTPCGHRFCKA 43 (118)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHH
T ss_pred CCCCCCcCChhhcCe-EECCcCChhhHH
Confidence 567899999999333 347999999864
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.39 E-value=0.093 Score=39.94 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=19.8
Q ss_pred CCceecccccchhhhhhhcCCCCc-ccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLS-IFV 383 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~-FHv 383 (387)
++.+|.||+..+-+ ...|||+|. |..
T Consensus 24 ~~~~C~IC~~~~~~-~~~~pCgH~~~C~ 50 (75)
T 2ecg_A 24 EEKLCKICMDRNIA-IVFVPCGHLVTCK 50 (75)
T ss_dssp HHHSCSSSCSSCCC-BCCSSSCCCCBCH
T ss_pred CCCCCCcCCCCCCC-EEEecCCCHHHHH
Confidence 56789999999832 345899998 754
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=86.07 E-value=0.11 Score=39.51 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=19.7
Q ss_pred CCceecccccchhhhhhhcCCCCc-ccc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLS-IFV 383 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~-FHv 383 (387)
++..|.||+..+-+ ...|||+|. |..
T Consensus 23 ~~~~C~iC~~~~~~-~~~~pCgH~~~C~ 49 (74)
T 4ic3_A 23 EEKLCKICMDRNIA-IVFVPCGHLVTCK 49 (74)
T ss_dssp HHTBCTTTSSSBCC-EEEETTCCBCCCH
T ss_pred cCCCCCCCCCCCCC-EEEcCCCChhHHH
Confidence 56689999998833 335799998 764
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=84.84 E-value=0.18 Score=50.92 Aligned_cols=27 Identities=4% Similarity=-0.097 Sum_probs=21.2
Q ss_pred CceecccccchhhhhhhcCCCCcccccc
Q 016582 358 DAVCFCWTAGFNHEFRYLVIDLSIFVYH 385 (387)
Q Consensus 358 DaeCcICLs~YGeELR~LPC~H~FHv~h 385 (387)
+.+|+||++.+.+ ...+||+|.||..+
T Consensus 332 ~~~C~ICle~~~~-pv~lpCGH~FC~~C 358 (389)
T 2y1n_A 332 FQLCKICAENDKD-VKIEPCGHLMCTSC 358 (389)
T ss_dssp SSBCTTTSSSBCC-EEEETTCCEECHHH
T ss_pred CCCCCccCcCCCC-eEEeCCCChhhHHH
Confidence 4689999999822 46699999998654
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=81.43 E-value=0.31 Score=41.86 Aligned_cols=28 Identities=7% Similarity=0.138 Sum_probs=21.5
Q ss_pred CCCceecccccchhhhhhhcCCCCccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIFVY 384 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FHv~ 384 (387)
.++..|.||+..+-+-+. +||+|.|+..
T Consensus 29 ~~~~~C~IC~~~~~~pv~-~~CgH~FC~~ 56 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQ-AQCGHRYCSF 56 (141)
T ss_dssp CGGGBCTTTCSBCSSEEE-CTTSCEEEHH
T ss_pred CcCcCCCCCChhhcCcEE-CCCCCccCHH
Confidence 456789999999943333 7999999754
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=78.54 E-value=0.23 Score=36.78 Aligned_cols=23 Identities=4% Similarity=-0.259 Sum_probs=17.7
Q ss_pred Cceecccccch-hhhhhhcCCCCc
Q 016582 358 DAVCFCWTAGF-NHEFRYLVIDLS 380 (387)
Q Consensus 358 DaeCcICLs~Y-GeELR~LPC~H~ 380 (387)
+.+|.||++.. ..-+-.+||+|.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~ 30 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHL 30 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEE
T ss_pred CCCCcccCCcCCCeEEEecCCCCH
Confidence 45799999988 544445699997
No 59
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=75.90 E-value=0.43 Score=36.96 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=17.6
Q ss_pred CCceecccccchhhhhhhcCCCCc
Q 016582 357 EDAVCFCWTAGFNHEFRYLVIDLS 380 (387)
Q Consensus 357 EDaeCcICLs~YGeELR~LPC~H~ 380 (387)
++.+|.||+..+-+ ...|||+|.
T Consensus 17 ~~~~C~IC~~~~~~-~v~~pCgH~ 39 (79)
T 2yho_A 17 EAMLCMVCCEEEIN-STFCPCGHT 39 (79)
T ss_dssp HHTBCTTTSSSBCC-EEEETTCBC
T ss_pred CCCEeEEeCcccCc-EEEECCCCH
Confidence 45689999998832 455899998
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=64.39 E-value=1.7 Score=39.57 Aligned_cols=26 Identities=0% Similarity=-0.334 Sum_probs=21.1
Q ss_pred CCCceecccccchhhhhhhcCCCCccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIF 382 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FH 382 (387)
.++..|+||+.-+.|-+. +||+|.|-
T Consensus 206 ~~~~~c~i~~~~~~dPv~-~~~gh~f~ 231 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCI-TPSGITYD 231 (281)
T ss_dssp CSTTBCTTTCSBCSSEEE-CSSCCEEE
T ss_pred CcccCCcCcCCHhcCCeE-CCCCCEEC
Confidence 467889999999966664 89999874
No 61
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=63.70 E-value=3.4 Score=33.24 Aligned_cols=26 Identities=4% Similarity=-0.098 Sum_probs=21.2
Q ss_pred CCCceecccccchhhhhhhcCCC-Cccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVID-LSIF 382 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~-H~FH 382 (387)
.++..|+||+.-|.|-+. +||+ |.|-
T Consensus 20 p~~~~CpI~~~~m~dPV~-~~cG~htf~ 46 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVV-LPSSRVTVD 46 (98)
T ss_dssp CTTTBCTTTCSBCSSEEE-CTTTCCEEE
T ss_pred cHhcCCcCccccccCCeE-CCCCCeEEC
Confidence 567899999999966665 7999 9874
No 62
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=63.43 E-value=1.9 Score=33.63 Aligned_cols=26 Identities=8% Similarity=-0.135 Sum_probs=20.4
Q ss_pred CCCceecccccchhhhhhhcCCCCccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIF 382 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FH 382 (387)
.++..|.||+.-+.|-+. +||+|.|-
T Consensus 12 p~~~~CpI~~~~m~dPV~-~~cGhtf~ 37 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVR-LPSGTVMD 37 (85)
T ss_dssp CTTTBCTTTCSBCSSEEE-CTTSCEEE
T ss_pred chheECcccCchhcCCeE-CCCCCEEC
Confidence 467889999999966553 78999873
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.03 E-value=2 Score=33.97 Aligned_cols=26 Identities=4% Similarity=-0.056 Sum_probs=20.5
Q ss_pred CCCceecccccchhhhhhhcC-CCCccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLV-IDLSIF 382 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LP-C~H~FH 382 (387)
.++..|+||+.-|.|-+. +| |+|.|-
T Consensus 5 ~~~~~CPI~~~~~~dPV~-~~~cGh~f~ 31 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVK-NKVCGHTYE 31 (94)
T ss_dssp SSCCBCTTTCSBCSSEEE-ESSSCCEEE
T ss_pred CcEeECcCcCchhcCCEE-cCCCCCeec
Confidence 356789999999977665 55 999874
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=60.16 E-value=2.1 Score=41.19 Aligned_cols=27 Identities=4% Similarity=-0.102 Sum_probs=23.1
Q ss_pred CCCceecccccchhhhhhhcCCCCccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIF 382 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FH 382 (387)
.++..|+||+.-|.+-++...|+|.|=
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFc 205 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFD 205 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEE
T ss_pred ceeeECcCccCcccCCeeeCCCCCccc
Confidence 356789999999988899889999873
No 65
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=58.68 E-value=2.1 Score=34.56 Aligned_cols=26 Identities=8% Similarity=-0.146 Sum_probs=20.6
Q ss_pred CCCceecccccchhhhhhhcCCCCccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSIF 382 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~FH 382 (387)
.++..|+||+.-+.|-+. +||+|.|-
T Consensus 27 p~~~~CpI~~~~m~dPV~-~~cGhtf~ 52 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVR-LPSGTIMD 52 (100)
T ss_dssp STTTBCTTTCSBCSSEEE-ETTTEEEE
T ss_pred cHhhCCcCccCcccCCeE-CCCCCEEc
Confidence 567899999999966554 78999764
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=57.30 E-value=2.5 Score=41.68 Aligned_cols=29 Identities=7% Similarity=-0.002 Sum_probs=21.4
Q ss_pred CCCceecccccchhhhhhhcCCCCc-ccccc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLS-IFVYH 385 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~-FHv~h 385 (387)
.++..|.||+..+-+ ...|||+|. |...+
T Consensus 293 ~~~~~C~IC~~~~~~-~v~lpCgH~~fC~~C 322 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS-VVFIPCGHLVVCQEC 322 (345)
T ss_dssp HTTCBCTTTSSSBCC-EEEETTCCEEECTTT
T ss_pred cCCCCCCccCCcCCc-eEEcCCCChhHhHHH
Confidence 367899999999833 344799998 76543
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=39.28 E-value=6.3 Score=35.47 Aligned_cols=25 Identities=0% Similarity=-0.287 Sum_probs=20.2
Q ss_pred CCCceecccccchhhhhhhcCCCCcc
Q 016582 356 GEDAVCFCWTAGFNHEFRYLVIDLSI 381 (387)
Q Consensus 356 ~EDaeCcICLs~YGeELR~LPC~H~F 381 (387)
+++..|+||+.-+.|-+. +||+|.|
T Consensus 104 p~~f~CPI~~elm~DPV~-~~~Ghtf 128 (179)
T 2f42_A 104 PDYLCGKISFELMREPCI-TPSGITY 128 (179)
T ss_dssp CGGGBCTTTCSBCSSEEE-CTTSCEE
T ss_pred cHhhcccCccccCCCCeE-CCCCCEE
Confidence 467889999999966665 4999976
Done!