Query 016583
Match_columns 387
No_of_seqs 324 out of 1537
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:09:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 4.1E-54 8.8E-59 431.5 34.6 336 15-382 10-366 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 3.6E-45 7.7E-50 364.3 25.8 266 99-382 41-326 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 5.7E-42 1.2E-46 346.1 28.6 228 94-350 109-355 (482)
4 cd05478 pepsin_A Pepsin A, asp 100.0 3.4E-41 7.3E-46 326.3 24.7 218 99-351 5-235 (317)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 2.9E-41 6.4E-46 327.8 23.3 219 99-350 1-234 (325)
6 cd05477 gastricsin Gastricsins 100.0 3.2E-40 7E-45 319.6 25.0 218 102-353 1-232 (318)
7 cd06098 phytepsin Phytepsin, a 100.0 8E-40 1.7E-44 316.7 25.0 213 99-345 5-233 (317)
8 cd06096 Plasmepsin_5 Plasmepsi 100.0 9.1E-40 2E-44 317.5 24.2 232 103-348 2-257 (326)
9 cd05488 Proteinase_A_fungi Fun 100.0 7.5E-40 1.6E-44 317.3 23.2 219 99-351 5-234 (320)
10 cd06097 Aspergillopepsin_like 100.0 1.3E-39 2.9E-44 309.5 23.8 211 105-349 1-225 (278)
11 cd05486 Cathespin_E Cathepsin 100.0 8E-40 1.7E-44 316.6 21.0 212 105-350 1-226 (316)
12 cd05487 renin_like Renin stimu 100.0 2.4E-39 5.1E-44 314.6 23.3 219 99-351 3-236 (326)
13 cd05485 Cathepsin_D_like Cathe 100.0 3.5E-39 7.5E-44 313.8 22.2 219 99-350 6-238 (329)
14 cd05489 xylanase_inhibitor_I_l 100.0 1.2E-38 2.7E-43 313.0 25.2 246 111-382 2-295 (362)
15 PTZ00147 plasmepsin-1; Provisi 100.0 1.3E-38 2.8E-43 319.4 25.2 221 92-350 126-360 (453)
16 cd05473 beta_secretase_like Be 100.0 6E-38 1.3E-42 309.2 25.8 244 103-382 2-274 (364)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 1E-37 2.2E-42 312.4 25.7 222 92-350 125-359 (450)
18 cd05472 cnd41_like Chloroplast 100.0 8.3E-38 1.8E-42 300.1 22.9 218 104-382 1-232 (299)
19 cd05471 pepsin_like Pepsin-lik 100.0 5.5E-36 1.2E-40 283.9 24.9 216 105-354 1-234 (283)
20 cd05475 nucellin_like Nucellin 100.0 6.6E-36 1.4E-40 283.4 22.0 189 104-341 2-196 (273)
21 PF00026 Asp: Eukaryotic aspar 100.0 1.4E-34 3.1E-39 279.0 14.4 217 104-354 1-231 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 2.4E-33 5.2E-38 268.3 20.5 196 104-372 2-223 (295)
23 cd05476 pepsin_A_like_plant Ch 100.0 2.7E-33 5.8E-38 264.5 18.3 176 104-341 1-195 (265)
24 PF14543 TAXi_N: Xylanase inhi 100.0 7.2E-31 1.6E-35 230.1 14.6 157 105-285 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 2.5E-22 5.4E-27 163.8 13.2 107 107-248 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.2 5.1E-11 1.1E-15 104.1 8.4 79 304-382 1-97 (161)
27 cd05483 retropepsin_like_bacte 97.9 6.1E-05 1.3E-09 59.0 7.9 92 104-250 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.7 0.16 3.4E-06 42.0 10.4 95 101-250 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.4 0.13 2.9E-06 39.2 8.6 25 108-134 2-26 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.3 0.45 9.7E-06 39.4 9.6 30 103-134 15-44 (124)
31 cd05484 retropepsin_like_LTR_2 92.6 0.15 3.2E-06 39.7 3.6 28 105-134 1-28 (91)
32 PF13975 gag-asp_proteas: gag- 89.6 0.72 1.6E-05 34.2 4.6 31 102-134 6-36 (72)
33 PF11925 DUF3443: Protein of u 87.4 4.7 0.0001 39.5 9.7 33 102-134 22-58 (370)
34 TIGR02281 clan_AA_DTGA clan AA 86.1 1.2 2.6E-05 36.7 4.4 37 301-344 8-44 (121)
35 PF00077 RVP: Retroviral aspar 84.5 1.5 3.3E-05 34.3 4.1 27 106-134 7-33 (100)
36 PF13650 Asp_protease_2: Aspar 84.4 1.5 3.3E-05 33.1 4.1 29 312-344 3-31 (90)
37 cd05484 retropepsin_like_LTR_2 79.3 3.5 7.5E-05 31.8 4.3 32 311-346 4-35 (91)
38 PF13975 gag-asp_proteas: gag- 77.1 4.9 0.00011 29.7 4.4 29 312-344 13-41 (72)
39 cd05483 retropepsin_like_bacte 76.4 5.5 0.00012 30.3 4.8 31 311-345 6-36 (96)
40 COG3577 Predicted aspartyl pro 75.0 28 0.00061 31.4 9.2 41 92-134 92-133 (215)
41 cd05482 HIV_retropepsin_like R 74.4 4.4 9.5E-05 31.4 3.6 25 108-134 2-26 (87)
42 cd06095 RP_RTVL_H_like Retrope 71.3 5.3 0.00011 30.5 3.4 25 108-134 2-26 (86)
43 cd06095 RP_RTVL_H_like Retrope 69.7 7.1 0.00015 29.8 3.8 29 312-344 3-31 (86)
44 cd05479 RP_DDI RP_DDI; retrope 64.0 11 0.00024 31.0 4.2 30 312-345 21-50 (124)
45 PF00077 RVP: Retroviral aspar 62.5 7.2 0.00016 30.4 2.7 30 311-344 9-38 (100)
46 COG3577 Predicted aspartyl pro 56.6 25 0.00054 31.7 5.2 36 302-344 103-138 (215)
47 PF09668 Asp_protease: Asparty 54.3 10 0.00022 31.4 2.3 34 104-139 24-58 (124)
48 cd05481 retropepsin_like_LTR_1 50.7 13 0.00029 28.9 2.4 31 312-345 3-33 (93)
49 PF12384 Peptidase_A2B: Ty3 tr 49.9 22 0.00048 30.9 3.7 28 107-134 35-62 (177)
50 PF09668 Asp_protease: Asparty 48.7 26 0.00056 29.0 3.9 29 312-344 29-57 (124)
51 TIGR03698 clan_AA_DTGF clan AA 44.1 17 0.00037 29.1 2.1 22 323-344 17-39 (107)
52 PF07172 GRP: Glycine rich pro 43.2 9 0.0002 30.2 0.3 21 1-22 1-21 (95)
53 COG5550 Predicted aspartyl pro 41.5 19 0.00041 29.7 1.9 22 325-346 29-51 (125)
54 cd05481 retropepsin_like_LTR_1 30.6 41 0.00088 26.2 2.2 19 116-134 9-27 (93)
55 TIGR03698 clan_AA_DTGF clan AA 29.5 73 0.0016 25.4 3.6 27 107-133 2-33 (107)
56 cd05475 nucellin_like Nucellin 22.1 1.1E+02 0.0025 28.4 4.0 32 103-134 157-194 (273)
57 cd06097 Aspergillopepsin_like 21.0 1E+02 0.0022 28.8 3.4 28 311-340 4-31 (278)
58 cd00303 retropepsin_like Retro 20.0 1.1E+02 0.0023 21.3 2.7 23 109-133 3-25 (92)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=4.1e-54 Score=431.50 Aligned_cols=336 Identities=26% Similarity=0.446 Sum_probs=258.6
Q ss_pred HHHhhhhccccCCceeeEEEEcccCCccccccccCCCCCCCCHHHHHHHHhcChhHHHHhhhhhccCCCCCceeecCCCc
Q 016583 15 ILLSCCAGCCFGFGTFGFDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPLTFSAGND 94 (387)
Q Consensus 15 ~ll~~~~~~~~~~~~~~~~l~h~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~r~~~l~~~~~~~~~~~~~~g~~ 94 (387)
+.++.+++..+...+++++|+||+++. +|...+..+..++++++++||+ +|++++.+..... .+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~h~~~~~-----sp~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~--~~~~~~-- 77 (431)
T PLN03146 10 FSFSELSAAEAPKGGFTVDLIHRDSPK-----SPFYNPSETPSQRLRNAFRRSI---SRVNHFRPTDASP--NDPQSD-- 77 (431)
T ss_pred HHHhhhhhccccCCceEEEEEeCCCCC-----CCCCCCCCChhHHHHHHHHHHH---HHHHHHhhccccC--CccccC--
Confidence 334445555566778999999999872 3333345566788999999999 4566654321111 111111
Q ss_pred eeeeccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccc
Q 016583 95 TYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC 173 (387)
Q Consensus 95 ~~~~~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C 173 (387)
+...+.+|+++|.||||||++.|++||||+++||+|. |..|..+. ++.|||++|+||+.++|+++.|
T Consensus 78 ---~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~---------~~~fdps~SST~~~~~C~s~~C 145 (431)
T PLN03146 78 ---LISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV---------SPLFDPKKSSTYKDVSCDSSQC 145 (431)
T ss_pred ---cccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC---------CCcccCCCCCCCcccCCCCccc
Confidence 1234678999999999999999999999999999999 98887653 3899999999999999999999
Q ss_pred ccCC---CCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCC
Q 016583 174 ELQK---QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM 250 (387)
Q Consensus 174 ~~~~---~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~ 250 (387)
+... .|..+ +.|.|.+.| +||+.+.|.+++|+|+|++..+ ....++++.|||++...+.+.. ..+||||||+
T Consensus 146 ~~~~~~~~c~~~-~~c~y~i~Y-gdgs~~~G~l~~Dtltlg~~~~-~~~~v~~~~FGc~~~~~g~f~~--~~~GilGLG~ 220 (431)
T PLN03146 146 QALGNQASCSDE-NTCTYSYSY-GDGSFTKGNLAVETLTIGSTSG-RPVSFPGIVFGCGHNNGGTFDE--KGSGIVGLGG 220 (431)
T ss_pred ccCCCCCCCCCC-CCCeeEEEe-CCCCceeeEEEEEEEEeccCCC-CcceeCCEEEeCCCCCCCCccC--CCceeEecCC
Confidence 8752 37542 469999999 6888889999999999987432 1356899999999988775532 4689999999
Q ss_pred CCCChHHHHHhcCCCCcceEEEecC-----CCCeeEEECCCCCC---CCccccCccCCCCCeEEEEEEEEEECCEEeecC
Q 016583 251 DKTSVPSILANQGLIPNSFSMCFGS-----DGTGRISFGDKGSP---GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE 322 (387)
Q Consensus 251 ~~~s~~~~L~~~g~i~~~FS~~L~~-----~~~G~l~fGg~d~~---~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~~ 322 (387)
+.+|+++||... +.++|||||.+ ...|.|+||+.... ...++|++......+|+|+|++|+||++.+.++
T Consensus 221 ~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~ 298 (431)
T PLN03146 221 GPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYT 298 (431)
T ss_pred CCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCC
Confidence 999999999753 45699999965 23799999996422 245678876544578999999999999988754
Q ss_pred ---------CcEEEcCcccceeeCHHHHHHHHHHHHHHhhccccCCCCcCCccccccccCCcccceeee
Q 016583 323 ---------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRSFLHLQALVV 382 (387)
Q Consensus 323 ---------~~~iiDSGTs~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 382 (387)
..+||||||++++||+++|++|.++|.++++..+.. +....++.||+......+|.|++
T Consensus 299 ~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~P~i~~ 366 (431)
T PLN03146 299 GSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVS-DPQGLLSLCYSSTSDIKLPIITA 366 (431)
T ss_pred ccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCC-CCCCCCCccccCCCCCCCCeEEE
Confidence 268999999999999999999999999999754432 22345789999765567787765
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-45 Score=364.34 Aligned_cols=266 Identities=35% Similarity=0.600 Sum_probs=218.1
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CC-CCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccC
Q 016583 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CV-SCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQ 176 (387)
Q Consensus 99 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~-~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~ 176 (387)
.+.++.|+++|.||||||+|.|++||||+++||+|. |. .|..+. ++.|||++||||+.+.|.++.|...
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~---------~~~f~p~~SSt~~~~~c~~~~c~~~ 111 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQH---------NPIFDPSASSTYKSVGCSSPRCKSL 111 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccC---------CCccCccccccccccCCCCcccccc
Confidence 356678999999999999999999999999999999 87 676542 1459999999999999999999998
Q ss_pred CCCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCC-CCCCcccccCCCCCCh
Q 016583 177 KQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDG-AAPNGLFGLGMDKTSV 255 (387)
Q Consensus 177 ~~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~-~~~dGIlGLg~~~~s~ 255 (387)
..|..+++.|.|.+.| +|++.+.|.+++|+|+|++.+ .+.++++.|||+..+.+. +.. .++|||||||++.+++
T Consensus 112 ~~~~~~~~~C~y~i~Y-gd~~~~~G~l~~Dtv~~~~~~---~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~ 186 (398)
T KOG1339|consen 112 PQSCSPNSSCPYSIQY-GDGSSTSGYLATDTVTFGGTT---SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSV 186 (398)
T ss_pred ccCcccCCcCceEEEe-CCCCceeEEEEEEEEEEcccc---ccccccEEEEeeecCccc-cccccccceEeecCCCCccc
Confidence 6555567899999999 688899999999999999743 356778999999999876 333 5689999999999999
Q ss_pred HHHHHhcCCCCcceEEEecCC-----CCeeEEECCCCCC-CCc---cccCccCCCCCeEEEEEEEEEECCEE------ee
Q 016583 256 PSILANQGLIPNSFSMCFGSD-----GTGRISFGDKGSP-GQG---ETPFSLRQTHPTYNITITQVSVGGNA------VN 320 (387)
Q Consensus 256 ~~~L~~~g~i~~~FS~~L~~~-----~~G~l~fGg~d~~-~~~---~~~~v~~~~~~~w~v~l~~i~vgg~~------~~ 320 (387)
++|+...+...++||+||.++ .+|.|+||++|+. +.+ ++|++.... .+|+|.+++|+|+++. ..
T Consensus 187 ~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~ 265 (398)
T KOG1339|consen 187 PSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFC 265 (398)
T ss_pred eeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEe
Confidence 999998877666899999984 3799999999998 666 555554443 4999999999999843 22
Q ss_pred cC-CcEEEcCcccceeeCHHHHHHHHHHHHHHhhccccCCCCcCCccccccccCCc-ccceeee
Q 016583 321 FE-FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRSFL-HLQALVV 382 (387)
Q Consensus 321 ~~-~~~iiDSGTs~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~-~~~~~~~ 382 (387)
.+ .++|+||||++++||+++|++|.++|.+++.. .......+..||...... .+|.|++
T Consensus 266 ~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~---~~~~~~~~~~C~~~~~~~~~~P~i~~ 326 (398)
T KOG1339|consen 266 TDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV---VGTDGEYFVPCFSISTSGVKLPDITF 326 (398)
T ss_pred cCCCCEEEECCcceeeccHHHHHHHHHHHHhheec---cccCCceeeecccCCCCcccCCcEEE
Confidence 22 67999999999999999999999999998611 112223456999877643 5666654
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=5.7e-42 Score=346.10 Aligned_cols=228 Identities=21% Similarity=0.333 Sum_probs=189.2
Q ss_pred ceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcc
Q 016583 94 DTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTL 172 (387)
Q Consensus 94 ~~~~~-~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~ 172 (387)
...++ ||.|.+|+++|+||||||+|.|+|||||+++||+|. .|....| ..|+.|||++||||+.++++.
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~--~C~~~~C------~~~~~yd~s~SSTy~~~~~~~-- 178 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK--ECKSGGC------APHRKFDPKKSSTYTKLKLGD-- 178 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch--hcCcccc------cccCCCCccccCCcEecCCCC--
Confidence 44556 899999999999999999999999999999999998 3333233 345899999999999853211
Q ss_pred cccCCCCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCC
Q 016583 173 CELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK 252 (387)
Q Consensus 173 C~~~~~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~ 252 (387)
....+.+.| ++ +++.|.+++|+|+|++ +.++++.||+++..++..+...++|||||||++.
T Consensus 179 -----------~~~~~~i~Y-Gs-Gs~~G~l~~DtV~ig~------l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~ 239 (482)
T PTZ00165 179 -----------ESAETYIQY-GT-GECVLALGKDTVKIGG------LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPD 239 (482)
T ss_pred -----------ccceEEEEe-CC-CcEEEEEEEEEEEECC------EEEccEEEEEEEeccccccccccccceeecCCCc
Confidence 012577999 44 4678999999999985 5789999999998876555555789999999976
Q ss_pred C---------ChHHHHHhcCCC-CcceEEEecC--CCCeeEEECCCCCC-C--CccccCccCCCCCeEEEEEEEEEECCE
Q 016583 253 T---------SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-G--QGETPFSLRQTHPTYNITITQVSVGGN 317 (387)
Q Consensus 253 ~---------s~~~~L~~~g~i-~~~FS~~L~~--~~~G~l~fGg~d~~-~--~~~~~~v~~~~~~~w~v~l~~i~vgg~ 317 (387)
+ ++.++|++||+| +++||+||.+ +.+|+|+|||+|+. + .+.+.|+|.....||+|.+++|+||++
T Consensus 240 ~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~ 319 (482)
T PTZ00165 240 KDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGK 319 (482)
T ss_pred ccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCE
Confidence 4 467899999999 8999999986 35799999999987 3 457888888778899999999999998
Q ss_pred Eeec---CCcEEEcCcccceeeCHHHHHHHHHHHHH
Q 016583 318 AVNF---EFSAIFDSGTSFTYLNDPAYTQISETFNS 350 (387)
Q Consensus 318 ~~~~---~~~~iiDSGTs~~~lp~~~~~~l~~~~~~ 350 (387)
.+.. .+.+|+||||+++++|++++++|.+++++
T Consensus 320 ~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~ 355 (482)
T PTZ00165 320 SLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPL 355 (482)
T ss_pred EeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCC
Confidence 7754 46799999999999999999999998864
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3.4e-41 Score=326.32 Aligned_cols=218 Identities=28% Similarity=0.457 Sum_probs=187.9
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCC
Q 016583 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (387)
Q Consensus 99 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~ 177 (387)
|+.+..|+++|.||||+|++.|+|||||+++||+|. |..| .| ..++.|||++|+|++..
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~---~c------~~~~~f~~~~Sst~~~~----------- 64 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQ---AC------SNHNRFNPRQSSTYQST----------- 64 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcc---cc------cccCcCCCCCCcceeeC-----------
Confidence 678899999999999999999999999999999998 6432 22 23489999999999985
Q ss_pred CCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCC----
Q 016583 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---- 253 (387)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~---- 253 (387)
++.|.+.| ++|+ +.|.+++|+|+|++ +.++++.|||++...+.+......|||||||++.+
T Consensus 65 -------~~~~~~~y-g~gs-~~G~~~~D~v~ig~------~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 129 (317)
T cd05478 65 -------GQPLSIQY-GTGS-MTGILGYDTVQVGG------ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSG 129 (317)
T ss_pred -------CcEEEEEE-CCce-EEEEEeeeEEEECC------EEECCEEEEEEEecCccccccccccceeeeccchhcccC
Confidence 67899999 5654 79999999999985 56889999999887765544445799999998754
Q ss_pred --ChHHHHHhcCCC-CcceEEEecCC--CCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEEeec--CCcE
Q 016583 254 --SVPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF--EFSA 325 (387)
Q Consensus 254 --s~~~~L~~~g~i-~~~FS~~L~~~--~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~--~~~~ 325 (387)
++..+|+++|+| +++||+||.++ .+|+|+|||+|++ +.+.+.|++.....+|.|.+++|+||++.+.. +..+
T Consensus 130 ~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~~~~~~ 209 (317)
T cd05478 130 ATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACSGGCQA 209 (317)
T ss_pred CCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccCCCCEE
Confidence 478899999999 89999999984 4699999999988 77788888877778999999999999998864 3579
Q ss_pred EEcCcccceeeCHHHHHHHHHHHHHH
Q 016583 326 IFDSGTSFTYLNDPAYTQISETFNSL 351 (387)
Q Consensus 326 iiDSGTs~~~lp~~~~~~l~~~~~~~ 351 (387)
||||||++++||+++|++|.+++++.
T Consensus 210 iiDTGts~~~lp~~~~~~l~~~~~~~ 235 (317)
T cd05478 210 IVDTGTSLLVGPSSDIANIQSDIGAS 235 (317)
T ss_pred EECCCchhhhCCHHHHHHHHHHhCCc
Confidence 99999999999999999999988654
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.9e-41 Score=327.82 Aligned_cols=219 Identities=24% Similarity=0.357 Sum_probs=184.1
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCC
Q 016583 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (387)
Q Consensus 99 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~ 177 (387)
|+.|.+|+++|.||||+|+|.|+|||||+++||+|. |..|. ..| ..++.|||++|+||+..
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~C------~~~~~y~~~~SsT~~~~----------- 62 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD-IAC------WLHHKYNSSKSSTYVKN----------- 62 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC-ccc------cCcCcCCcccCcceeeC-----------
Confidence 567899999999999999999999999999999998 65331 122 24589999999999873
Q ss_pred CCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCCC---
Q 016583 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS--- 254 (387)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s--- 254 (387)
++.|.+.| ++| ++.|.+++|+|+|++ ..++++.|||++...+..+.....|||||||++..+
T Consensus 63 -------~~~~~i~Y-g~G-~~~G~~~~D~v~~g~------~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 127 (325)
T cd05490 63 -------GTEFAIQY-GSG-SLSGYLSQDTVSIGG------LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDG 127 (325)
T ss_pred -------CcEEEEEE-CCc-EEEEEEeeeEEEECC------EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccC
Confidence 68999999 565 589999999999995 468999999999877643344457999999997654
Q ss_pred ---hHHHHHhcCCC-CcceEEEecCC----CCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEEee--cCC
Q 016583 255 ---VPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN--FEF 323 (387)
Q Consensus 255 ---~~~~L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~--~~~ 323 (387)
+.++|+++|+| +++||+||.++ .+|+|+|||+|++ +.+.+.|++.....+|.|++++|+||++... ...
T Consensus 128 ~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~ 207 (325)
T cd05490 128 VTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLCKGGC 207 (325)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeecCCCC
Confidence 56799999999 89999999862 3699999999988 6778888877767899999999999987543 235
Q ss_pred cEEEcCcccceeeCHHHHHHHHHHHHH
Q 016583 324 SAIFDSGTSFTYLNDPAYTQISETFNS 350 (387)
Q Consensus 324 ~~iiDSGTs~~~lp~~~~~~l~~~~~~ 350 (387)
.+||||||+++++|++++++|.+++++
T Consensus 208 ~aiiDSGTt~~~~p~~~~~~l~~~~~~ 234 (325)
T cd05490 208 EAIVDTGTSLITGPVEEVRALQKAIGA 234 (325)
T ss_pred EEEECCCCccccCCHHHHHHHHHHhCC
Confidence 799999999999999999999998864
No 6
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.2e-40 Score=319.56 Aligned_cols=218 Identities=23% Similarity=0.409 Sum_probs=183.9
Q ss_pred CceEEEEEEecCCCeEEEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCC
Q 016583 102 GFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPS 181 (387)
Q Consensus 102 ~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~ 181 (387)
|..|+++|.||||+|++.|++||||+++||+|. .|..+.| ..++.|||++|+||+..
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~--~C~~~~C------~~~~~f~~~~SsT~~~~--------------- 57 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV--LCQSQAC------TNHTKFNPSQSSTYSTN--------------- 57 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC--CCCCccc------cccCCCCcccCCCceEC---------------
Confidence 467999999999999999999999999999998 3433333 23489999999999983
Q ss_pred CCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCC------CCh
Q 016583 182 AGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK------TSV 255 (387)
Q Consensus 182 ~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~------~s~ 255 (387)
.|.|.+.| ++| ++.|.+++|+|+|++ +.++++.|||++...+..+.....+||||||++. .++
T Consensus 58 ---~~~~~~~Y-g~G-s~~G~~~~D~i~~g~------~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~ 126 (318)
T cd05477 58 ---GETFSLQY-GSG-SLTGIFGYDTVTVQG------IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTV 126 (318)
T ss_pred ---CcEEEEEE-CCc-EEEEEEEeeEEEECC------EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCH
Confidence 78999999 565 479999999999985 5689999999998765433333568999999853 468
Q ss_pred HHHHHhcCCC-CcceEEEecCC---CCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEEeec---CCcEEE
Q 016583 256 PSILANQGLI-PNSFSMCFGSD---GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF---EFSAIF 327 (387)
Q Consensus 256 ~~~L~~~g~i-~~~FS~~L~~~---~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~---~~~~ii 327 (387)
+++|+++|.| +++||+||.++ ..|.|+|||+|++ +.+.+.|++.....+|.|++++|+|+++.+.. +..+||
T Consensus 127 ~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ii 206 (318)
T cd05477 127 MQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIV 206 (318)
T ss_pred HHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeE
Confidence 8999999999 89999999873 4699999999988 66777777777778999999999999998753 356999
Q ss_pred cCcccceeeCHHHHHHHHHHHHHHhh
Q 016583 328 DSGTSFTYLNDPAYTQISETFNSLAK 353 (387)
Q Consensus 328 DSGTs~~~lp~~~~~~l~~~~~~~~~ 353 (387)
||||++++||++++++|+++++++..
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~ 232 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQD 232 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCccc
Confidence 99999999999999999999976543
No 7
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=8e-40 Score=316.70 Aligned_cols=213 Identities=27% Similarity=0.397 Sum_probs=178.2
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCC
Q 016583 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (387)
Q Consensus 99 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~ 177 (387)
|+.+..|+++|.||||+|+|.|+|||||+++||+|. |.. ...| ..++.|||++|+||+..
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~--~~~C------~~~~~y~~~~SsT~~~~----------- 65 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYF--SIAC------YFHSKYKSSKSSTYKKN----------- 65 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCC--Cccc------cccCcCCcccCCCcccC-----------
Confidence 788999999999999999999999999999999998 531 1122 23488999999999984
Q ss_pred CCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCCC---
Q 016583 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS--- 254 (387)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s--- 254 (387)
...+.+.| ++| .+.|.+++|+|+|++ ..++++.||+++...+..+....+|||||||++..+
T Consensus 66 -------~~~~~i~Y-g~G-~~~G~~~~D~v~ig~------~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 130 (317)
T cd06098 66 -------GTSASIQY-GTG-SISGFFSQDSVTVGD------LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGK 130 (317)
T ss_pred -------CCEEEEEc-CCc-eEEEEEEeeEEEECC------EEECCEEEEEEEecCCccccccccceeccccccchhhcC
Confidence 67899999 454 579999999999985 568999999998776543344567999999997654
Q ss_pred ---hHHHHHhcCCC-CcceEEEecCC----CCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEEeecC---
Q 016583 255 ---VPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--- 322 (387)
Q Consensus 255 ---~~~~L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~~--- 322 (387)
+..+|++||+| +++||+||.++ ..|+|+|||+|++ +.+.+.|++.....+|.|.+++|+||++.+...
T Consensus 131 ~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~ 210 (317)
T cd06098 131 AVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGG 210 (317)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCC
Confidence 45689999999 89999999862 4799999999998 777788887777789999999999999887542
Q ss_pred CcEEEcCcccceeeCHHHHHHHH
Q 016583 323 FSAIFDSGTSFTYLNDPAYTQIS 345 (387)
Q Consensus 323 ~~~iiDSGTs~~~lp~~~~~~l~ 345 (387)
..+||||||+++++|++++++|.
T Consensus 211 ~~aivDTGTs~~~lP~~~~~~i~ 233 (317)
T cd06098 211 CAAIADSGTSLLAGPTTIVTQIN 233 (317)
T ss_pred cEEEEecCCcceeCCHHHHHhhh
Confidence 56999999999999999877664
No 8
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=9.1e-40 Score=317.51 Aligned_cols=232 Identities=24% Similarity=0.466 Sum_probs=186.7
Q ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCC
Q 016583 103 FLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPS 181 (387)
Q Consensus 103 ~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~ 181 (387)
+.|+++|.||||+|++.|+|||||+++||+|. |..|..+. ++.|||++|+|++.++|++..|.....|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~---------~~~y~~~~Sst~~~~~C~~~~c~~~~~~~- 71 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM---------EPPYNLNNSITSSILYCDCNKCCYCLSCL- 71 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC---------CCCcCcccccccccccCCCccccccCcCC-
Confidence 36999999999999999999999999999999 88886432 37899999999999999999996544453
Q ss_pred CCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcc-cccccceEEEEEEeecCCCCCCCCCCcccccCCCCCC----hH
Q 016583 182 AGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQS-KSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS----VP 256 (387)
Q Consensus 182 ~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~-~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s----~~ 256 (387)
++.|.|.+.| ++|+.+.|.+++|+|+|++..... +....++.|||+....+.+.. ...+||||||+...+ ..
T Consensus 72 -~~~~~~~i~Y-~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~~~~~~~~ 148 (326)
T cd06096 72 -NNKCEYSISY-SEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLT-QQATGILGLSLTKNNGLPTPI 148 (326)
T ss_pred -CCcCcEEEEE-CCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccc-cccceEEEccCCcccccCchh
Confidence 4679999999 677789999999999998643110 011236789999988765533 356999999998742 22
Q ss_pred HHHHhcCCC-C--cceEEEecCCCCeeEEECCCCCC-CC----------ccccCccCCCCCeEEEEEEEEEECCEE--e-
Q 016583 257 SILANQGLI-P--NSFSMCFGSDGTGRISFGDKGSP-GQ----------GETPFSLRQTHPTYNITITQVSVGGNA--V- 319 (387)
Q Consensus 257 ~~L~~~g~i-~--~~FS~~L~~~~~G~l~fGg~d~~-~~----------~~~~~v~~~~~~~w~v~l~~i~vgg~~--~- 319 (387)
.+|.+++.+ . ++||+||.++ .|.|+||++|+. +. +.+.|++.....+|.|.+++|+|+++. .
T Consensus 149 ~~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~ 227 (326)
T cd06096 149 ILLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSG 227 (326)
T ss_pred HHHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEccccccee
Confidence 346666655 4 8999999974 699999999987 33 456677766668999999999999885 2
Q ss_pred -ecCCcEEEcCcccceeeCHHHHHHHHHHH
Q 016583 320 -NFEFSAIFDSGTSFTYLNDPAYTQISETF 348 (387)
Q Consensus 320 -~~~~~~iiDSGTs~~~lp~~~~~~l~~~~ 348 (387)
.....+||||||++++||+++|++|.+++
T Consensus 228 ~~~~~~aivDSGTs~~~lp~~~~~~l~~~~ 257 (326)
T cd06096 228 NTKGLGMLVDSGSTLSHFPEDLYNKINNFF 257 (326)
T ss_pred cccCCCEEEeCCCCcccCCHHHHHHHHhhc
Confidence 23467999999999999999999999988
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=7.5e-40 Score=317.31 Aligned_cols=219 Identities=24% Similarity=0.414 Sum_probs=184.4
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCC
Q 016583 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQ 178 (387)
Q Consensus 99 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~ 178 (387)
|+.+..|+++|.||||+|++.|++||||+++||+|. .|....| ..++.|||++|+|++..
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~--~C~~~~C------~~~~~y~~~~Sst~~~~------------ 64 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV--KCGSIAC------FLHSKYDSSASSTYKAN------------ 64 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC--CCCCccc------CCcceECCCCCcceeeC------------
Confidence 678889999999999999999999999999999998 3333233 23478999999999873
Q ss_pred CCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCCCh---
Q 016583 179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSV--- 255 (387)
Q Consensus 179 C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s~--- 255 (387)
+|.+.+.| ++| ++.|.+++|+|+|++ +.++++.|||++...+..+.....|||||||++..+.
T Consensus 65 ------~~~~~~~y-~~g-~~~G~~~~D~v~ig~------~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~ 130 (320)
T cd05488 65 ------GTEFKIQY-GSG-SLEGFVSQDTLSIGD------LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKI 130 (320)
T ss_pred ------CCEEEEEE-CCc-eEEEEEEEeEEEECC------EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCC
Confidence 78999999 555 589999999999985 5688999999987766544444579999999987643
Q ss_pred ---HHHHHhcCCC-CcceEEEecCC--CCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEEeecC-CcEEE
Q 016583 256 ---PSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE-FSAIF 327 (387)
Q Consensus 256 ---~~~L~~~g~i-~~~FS~~L~~~--~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~~-~~~ii 327 (387)
..+|++||+| +++||+||.+. ..|.|+|||+|+. +.+.+.|++.....+|.|++++|+||++.+... ..++|
T Consensus 131 ~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~iv 210 (320)
T cd05488 131 VPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELENTGAAI 210 (320)
T ss_pred CCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccCCCeEEE
Confidence 3478999999 89999999973 5799999999987 667777777766789999999999999887653 67999
Q ss_pred cCcccceeeCHHHHHHHHHHHHHH
Q 016583 328 DSGTSFTYLNDPAYTQISETFNSL 351 (387)
Q Consensus 328 DSGTs~~~lp~~~~~~l~~~~~~~ 351 (387)
||||++++||++++++|.+++++.
T Consensus 211 DSGtt~~~lp~~~~~~l~~~~~~~ 234 (320)
T cd05488 211 DTGTSLIALPSDLAEMLNAEIGAK 234 (320)
T ss_pred cCCcccccCCHHHHHHHHHHhCCc
Confidence 999999999999999998888643
No 10
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.3e-39 Score=309.47 Aligned_cols=211 Identities=23% Similarity=0.371 Sum_probs=179.4
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCCCC
Q 016583 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (387)
Q Consensus 105 Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (387)
|+++|+||||+|++.|+|||||+++||+|. |..|... .+..|||++|+|++..
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~---------~~~~y~~~~Sst~~~~----------------- 54 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQG---------GHKLYDPSKSSTAKLL----------------- 54 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhc---------cCCcCCCccCccceec-----------------
Confidence 789999999999999999999999999999 7777533 3377999999999875
Q ss_pred CCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCC---------C
Q 016583 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---------S 254 (387)
Q Consensus 184 ~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~---------s 254 (387)
..|.|.+.| ++|+.+.|.+++|+|+|++ ..++++.||+++...+.++.....|||||||+... +
T Consensus 55 ~~~~~~i~Y-~~G~~~~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~ 127 (278)
T cd06097 55 PGATWSISY-GDGSSASGIVYTDTVSIGG------VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKT 127 (278)
T ss_pred CCcEEEEEe-CCCCeEEEEEEEEEEEECC------EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCC
Confidence 368999999 6777899999999999985 46899999999987764445456899999999764 3
Q ss_pred hHHHHHhcCCCCcceEEEecCCCCeeEEECCCCCC-CCccccCccCCC-CCeEEEEEEEEEECCEEee--cCCcEEEcCc
Q 016583 255 VPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSP-GQGETPFSLRQT-HPTYNITITQVSVGGNAVN--FEFSAIFDSG 330 (387)
Q Consensus 255 ~~~~L~~~g~i~~~FS~~L~~~~~G~l~fGg~d~~-~~~~~~~v~~~~-~~~w~v~l~~i~vgg~~~~--~~~~~iiDSG 330 (387)
+.++|.+++. +++||+||.++..|+|+|||+|+. +.+.+.|++... ..+|.|++++|+||++... ....++||||
T Consensus 128 ~~~~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSG 206 (278)
T cd06097 128 FFENALSSLD-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTG 206 (278)
T ss_pred HHHHHHHhcc-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecC
Confidence 5668888765 899999999867899999999988 777778877654 6789999999999998432 3467999999
Q ss_pred ccceeeCHHHHHHHHHHHH
Q 016583 331 TSFTYLNDPAYTQISETFN 349 (387)
Q Consensus 331 Ts~~~lp~~~~~~l~~~~~ 349 (387)
|+++++|++++++|.+++.
T Consensus 207 Ts~~~lP~~~~~~l~~~l~ 225 (278)
T cd06097 207 TTLILLPDAIVEAYYSQVP 225 (278)
T ss_pred CchhcCCHHHHHHHHHhCc
Confidence 9999999999999998883
No 11
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=8e-40 Score=316.58 Aligned_cols=212 Identities=23% Similarity=0.384 Sum_probs=179.8
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCCCCC
Q 016583 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGS 184 (387)
Q Consensus 105 Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~~ 184 (387)
|+++|.||||+|++.|+|||||+++||+|. .|....| ..++.|||++|+||+..
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~--~C~~~~C------~~~~~y~~~~SsT~~~~------------------ 54 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI--YCTSQAC------TKHNRFQPSESSTYVSN------------------ 54 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC--CCCCccc------CccceECCCCCcccccC------------------
Confidence 789999999999999999999999999998 3333333 23488999999999884
Q ss_pred CCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCCC------hHHH
Q 016583 185 NCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS------VPSI 258 (387)
Q Consensus 185 ~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s------~~~~ 258 (387)
++.|.+.| ++| .+.|.+++|+|+|++ +.++++.|||+..+.+..+.....|||||||++.++ +.++
T Consensus 55 ~~~~~i~Y-g~g-~~~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~ 126 (316)
T cd05486 55 GEAFSIQY-GTG-SLTGIIGIDQVTVEG------ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDN 126 (316)
T ss_pred CcEEEEEe-CCc-EEEEEeeecEEEECC------EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHH
Confidence 78999999 555 589999999999985 568899999998776644444467999999997654 5789
Q ss_pred HHhcCCC-CcceEEEecCC----CCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEEeec--CCcEEEcCc
Q 016583 259 LANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF--EFSAIFDSG 330 (387)
Q Consensus 259 L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~--~~~~iiDSG 330 (387)
|++||+| +++||+||.++ ..|+|+|||+|++ +.+.+.|++.....+|.|++++|+||++.+.. ...+|||||
T Consensus 127 l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTG 206 (316)
T cd05486 127 MMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTG 206 (316)
T ss_pred HHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecCCCCEEEECCC
Confidence 9999999 89999999862 3699999999988 77778888877778999999999999987754 357999999
Q ss_pred ccceeeCHHHHHHHHHHHHH
Q 016583 331 TSFTYLNDPAYTQISETFNS 350 (387)
Q Consensus 331 Ts~~~lp~~~~~~l~~~~~~ 350 (387)
|+++++|++++++|.+++++
T Consensus 207 Ts~~~lP~~~~~~l~~~~~~ 226 (316)
T cd05486 207 TSLITGPSGDIKQLQNYIGA 226 (316)
T ss_pred cchhhcCHHHHHHHHHHhCC
Confidence 99999999999999887754
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.4e-39 Score=314.61 Aligned_cols=219 Identities=25% Similarity=0.431 Sum_probs=183.0
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCC
Q 016583 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (387)
Q Consensus 99 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~ 177 (387)
|+.+..|+++|.||||+|+++|+|||||+++||++. |..|.. .| ..++.|||++|+||+..
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~-~c------~~~~~y~~~~SsT~~~~----------- 64 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYT-AC------VTHNLYDASDSSTYKEN----------- 64 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcch-hh------cccCcCCCCCCeeeeEC-----------
Confidence 678899999999999999999999999999999998 654421 12 24589999999999984
Q ss_pred CCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCC----
Q 016583 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---- 253 (387)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~---- 253 (387)
+|.|.+.| ++| .+.|.+++|+|+|++. .+ ++.||++....+.-+.....|||||||++..
T Consensus 65 -------~~~~~~~Y-g~g-~~~G~~~~D~v~~g~~------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 128 (326)
T cd05487 65 -------GTEFTIHY-ASG-TVKGFLSQDIVTVGGI------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGG 128 (326)
T ss_pred -------CEEEEEEe-CCc-eEEEEEeeeEEEECCE------Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccC
Confidence 78999999 565 5899999999999863 34 4789999876432222335799999999754
Q ss_pred --ChHHHHHhcCCC-CcceEEEecCC----CCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEEeecC--C
Q 016583 254 --SVPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323 (387)
Q Consensus 254 --s~~~~L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~~--~ 323 (387)
++..+|++||+| +++||+||.++ ..|+|+|||+|++ +.+.+.+++.....+|.|++++|+|+++.+... .
T Consensus 129 ~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~ 208 (326)
T cd05487 129 VTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCEDGC 208 (326)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecCCCC
Confidence 456789999999 99999999873 3699999999998 777788887777789999999999999987643 5
Q ss_pred cEEEcCcccceeeCHHHHHHHHHHHHHH
Q 016583 324 SAIFDSGTSFTYLNDPAYTQISETFNSL 351 (387)
Q Consensus 324 ~~iiDSGTs~~~lp~~~~~~l~~~~~~~ 351 (387)
.+||||||++++||++++++|++++++.
T Consensus 209 ~aiiDSGts~~~lP~~~~~~l~~~~~~~ 236 (326)
T cd05487 209 TAVVDTGASFISGPTSSISKLMEALGAK 236 (326)
T ss_pred EEEECCCccchhCcHHHHHHHHHHhCCc
Confidence 6999999999999999999999998754
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.5e-39 Score=313.79 Aligned_cols=219 Identities=24% Similarity=0.372 Sum_probs=184.9
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCC
Q 016583 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (387)
Q Consensus 99 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~ 177 (387)
|+.+..|+++|.||||+|++.|++||||+++||+|. |..|.. .| ..++.|||++|+|++..
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~-~c------~~~~~y~~~~Sst~~~~----------- 67 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNI-AC------LLHNKYDSTKSSTYKKN----------- 67 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCc-cc------cCCCeECCcCCCCeEEC-----------
Confidence 788999999999999999999999999999999998 654321 12 23478999999999984
Q ss_pred CCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCCC---
Q 016583 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS--- 254 (387)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s--- 254 (387)
.|.|.+.| ++|+ +.|.+++|+++|++ ..++++.|||+..+.+..+.....+||||||++..+
T Consensus 68 -------~~~~~i~Y-~~g~-~~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 132 (329)
T cd05485 68 -------GTEFAIQY-GSGS-LSGFLSTDTVSVGG------VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDG 132 (329)
T ss_pred -------CeEEEEEE-CCce-EEEEEecCcEEECC------EEECCEEEEEEEecCCccccccccceEEEcCCccccccC
Confidence 68999999 5654 89999999999985 468899999998776643334457999999998765
Q ss_pred ---hHHHHHhcCCC-CcceEEEecCC----CCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEEeec-CCc
Q 016583 255 ---VPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-EFS 324 (387)
Q Consensus 255 ---~~~~L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~-~~~ 324 (387)
+..+|++||+| ++.||+||.++ ..|+|+|||+|++ +.+.+.|+|.....+|.|.+++++|+++.+.. +..
T Consensus 133 ~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~ 212 (329)
T cd05485 133 VVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQ 212 (329)
T ss_pred CCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecCCCcE
Confidence 45799999999 89999999872 3699999999987 66777777766678999999999999988753 357
Q ss_pred EEEcCcccceeeCHHHHHHHHHHHHH
Q 016583 325 AIFDSGTSFTYLNDPAYTQISETFNS 350 (387)
Q Consensus 325 ~iiDSGTs~~~lp~~~~~~l~~~~~~ 350 (387)
+||||||+++++|++++++|.+++++
T Consensus 213 ~iiDSGtt~~~lP~~~~~~l~~~~~~ 238 (329)
T cd05485 213 AIADTGTSLIAGPVDEIEKLNNAIGA 238 (329)
T ss_pred EEEccCCcceeCCHHHHHHHHHHhCC
Confidence 99999999999999999999988864
No 14
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.2e-38 Score=312.96 Aligned_cols=246 Identities=25% Similarity=0.402 Sum_probs=191.3
Q ss_pred ecCCCeE-EEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCC------------
Q 016583 111 VGQPALS-FIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK------------ 177 (387)
Q Consensus 111 iGtP~q~-~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~------------ 177 (387)
+|||-.+ +.|++||||+++||+|. |.+|+||+.++|+++.|+...
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~----------------------~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~ 59 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD----------------------AGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAP 59 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC----------------------CCCcCCCCccCcCChhhccccccCCCccccCCC
Confidence 5788777 99999999999999996 246889999999999998641
Q ss_pred --CCCCCCCCCceEEE-eCCCCceEEEEEEEEEEEeccCCCcc--cccccceEEEEEEeecCCCCCCCCCCcccccCCCC
Q 016583 178 --QCPSAGSNCPYQVR-YLSDGTMSTGFLVEDVLHLATDEKQS--KSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK 252 (387)
Q Consensus 178 --~C~~~~~~~~~~~~-Y~~dg~~~~G~~~~D~v~ig~~~~~~--~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~ 252 (387)
.| .++.|.|... | .+++.+.|.+++|+|+|+..++.. ..+++++.|||+++.....+. ..+|||||||++.
T Consensus 60 ~~~c--~~~~C~y~~~~y-~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~-~~~dGIlGLg~~~ 135 (362)
T cd05489 60 GPGC--GNNTCTAHPYNP-VTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLP-PGAQGVAGLGRSP 135 (362)
T ss_pred CCCC--CCCcCeeEcccc-ccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCc-cccccccccCCCc
Confidence 23 2245878655 7 577899999999999998644221 146889999999876422111 2369999999999
Q ss_pred CChHHHHHhcCCCCcceEEEecC--CCCeeEEECCCCCC----------CCccccCccCC-CCCeEEEEEEEEEECCEEe
Q 016583 253 TSVPSILANQGLIPNSFSMCFGS--DGTGRISFGDKGSP----------GQGETPFSLRQ-THPTYNITITQVSVGGNAV 319 (387)
Q Consensus 253 ~s~~~~L~~~g~i~~~FS~~L~~--~~~G~l~fGg~d~~----------~~~~~~~v~~~-~~~~w~v~l~~i~vgg~~~ 319 (387)
+|+++||..++.++++|||||.+ ..+|.|+||+.+.. ...++|++..+ ...+|+|+|++|+||++++
T Consensus 136 lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l 215 (362)
T cd05489 136 LSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAV 215 (362)
T ss_pred cchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEEC
Confidence 99999998876568899999987 35799999998853 34667776554 2468999999999999988
Q ss_pred ecC-----------CcEEEcCcccceeeCHHHHHHHHHHHHHHhhccccCCCCcCCccccccccC------Ccccceeee
Q 016583 320 NFE-----------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRS------FLHLQALVV 382 (387)
Q Consensus 320 ~~~-----------~~~iiDSGTs~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~------~~~~~~~~~ 382 (387)
.++ ..+||||||++++||+++|++|.++|.++++...........+++||+... ...+|.|++
T Consensus 216 ~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~ 295 (362)
T cd05489 216 PLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDL 295 (362)
T ss_pred CCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEE
Confidence 753 369999999999999999999999999998754432221222489998754 257888765
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.3e-38 Score=319.43 Aligned_cols=221 Identities=22% Similarity=0.343 Sum_probs=182.6
Q ss_pred CCceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCC
Q 016583 92 GNDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCN 169 (387)
Q Consensus 92 g~~~~~~-~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~ 169 (387)
.+..+++ |+.+..|+++|+||||+|+|.|+|||||+++||+|. |.. ..| ..++.|||++|+||+..
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~---~~C------~~~~~yd~s~SsT~~~~--- 193 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTT---EGC------ETKNLYDSSKSKTYEKD--- 193 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCc---ccc------cCCCccCCccCcceEEC---
Confidence 4456777 889999999999999999999999999999999998 543 233 23489999999999984
Q ss_pred CcccccCCCCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCC--CCCCCCCCcccc
Q 016583 170 STLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGS--FLDGAAPNGLFG 247 (387)
Q Consensus 170 ~~~C~~~~~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~--~~~~~~~dGIlG 247 (387)
++.|.+.| ++| .+.|.+++|+|+||+ +.++ ..|+++.+..+. ......+|||||
T Consensus 194 ---------------~~~f~i~Y-g~G-svsG~~~~DtVtiG~------~~v~-~qF~~~~~~~~f~~~~~~~~~DGILG 249 (453)
T PTZ00147 194 ---------------GTKVEMNY-VSG-TVSGFFSKDLVTIGN------LSVP-YKFIEVTDTNGFEPFYTESDFDGIFG 249 (453)
T ss_pred ---------------CCEEEEEe-CCC-CEEEEEEEEEEEECC------EEEE-EEEEEEEeccCcccccccccccceec
Confidence 68999999 465 589999999999986 3455 579998876542 223345799999
Q ss_pred cCCCCCC------hHHHHHhcCCC-CcceEEEecC--CCCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCE
Q 016583 248 LGMDKTS------VPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGN 317 (387)
Q Consensus 248 Lg~~~~s------~~~~L~~~g~i-~~~FS~~L~~--~~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~ 317 (387)
||++.++ ++.+|++||+| +++||+||++ ...|.|+|||+|++ +.+.+.|++.....+|.|.++ +.+++.
T Consensus 250 LG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~ 328 (453)
T PTZ00147 250 LGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNV 328 (453)
T ss_pred ccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCE
Confidence 9998754 56799999999 8999999987 35799999999998 778888888777789999998 578765
Q ss_pred EeecCCcEEEcCcccceeeCHHHHHHHHHHHHH
Q 016583 318 AVNFEFSAIFDSGTSFTYLNDPAYTQISETFNS 350 (387)
Q Consensus 318 ~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~~~~ 350 (387)
.. ....+||||||+++++|+++++++.+++.+
T Consensus 329 ~~-~~~~aIiDSGTsli~lP~~~~~ai~~~l~~ 360 (453)
T PTZ00147 329 SS-EKANVIVDSGTSVITVPTEFLNKFVESLDV 360 (453)
T ss_pred ec-CceeEEECCCCchhcCCHHHHHHHHHHhCC
Confidence 32 346799999999999999999999998854
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=6e-38 Score=309.23 Aligned_cols=244 Identities=20% Similarity=0.256 Sum_probs=183.5
Q ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCCC
Q 016583 103 FLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA 182 (387)
Q Consensus 103 ~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~ 182 (387)
..|+++|.||||+|+|.|+|||||+++||+|. .|.. .++.|||++|+||+..
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~--~~~~----------~~~~f~~~~SsT~~~~---------------- 53 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAA--PHPF----------IHTYFHRELSSTYRDL---------------- 53 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcC--CCcc----------ccccCCchhCcCcccC----------------
Confidence 46999999999999999999999999999998 2311 2378999999999985
Q ss_pred CCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCC--------C
Q 016583 183 GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT--------S 254 (387)
Q Consensus 183 ~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~--------s 254 (387)
+|.|++.| ++| .+.|.+++|+|+|++.. .. ...+.|++.....+.+......|||||||++.+ +
T Consensus 54 --~~~~~i~Y-g~G-s~~G~~~~D~v~ig~~~---~~-~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~ 125 (364)
T cd05473 54 --GKGVTVPY-TQG-SWEGELGTDLVSIPKGP---NV-TFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEP 125 (364)
T ss_pred --CceEEEEE-Ccc-eEEEEEEEEEEEECCCC---cc-ceEEeeEEEeccccceecccccceeeeecccccccCCCCCCC
Confidence 78999999 565 57999999999998521 11 112335566554444333345799999999765 3
Q ss_pred hHHHHHhcCCCCcceEEEecC-----------CCCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEEeecC
Q 016583 255 VPSILANQGLIPNSFSMCFGS-----------DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE 322 (387)
Q Consensus 255 ~~~~L~~~g~i~~~FS~~L~~-----------~~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~~ 322 (387)
+.++|.+|+.++++||+||.. ...|.|+|||+|++ +.+.+.|+|.....+|.|.+++|+|+++.+..+
T Consensus 126 ~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~ 205 (364)
T cd05473 126 FFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLD 205 (364)
T ss_pred HHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccc
Confidence 567899998887899998842 13699999999987 666666776666678999999999999988653
Q ss_pred ------CcEEEcCcccceeeCHHHHHHHHHHHHHHhhccccCCCCcC-CccccccccCC--cccceeee
Q 016583 323 ------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDL-PFEYCYVLRSF--LHLQALVV 382 (387)
Q Consensus 323 ------~~~iiDSGTs~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~C~~~~~~--~~~~~~~~ 382 (387)
..+||||||++++||+++|++|.++++++......+..-.. ....|++.... ..+|.|.+
T Consensus 206 ~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~ 274 (364)
T cd05473 206 CKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISI 274 (364)
T ss_pred cccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEE
Confidence 25999999999999999999999999988653222111001 12369875432 34676554
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1e-37 Score=312.42 Aligned_cols=222 Identities=21% Similarity=0.322 Sum_probs=180.6
Q ss_pred CCceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCC
Q 016583 92 GNDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNS 170 (387)
Q Consensus 92 g~~~~~~-~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~ 170 (387)
.+..+++ |+.+..||++|.||||+|+|.|+|||||+++||+|. .|....| ..++.|||++|+|++..
T Consensus 125 ~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~--~C~~~~C------~~~~~yd~s~SsT~~~~---- 192 (450)
T PTZ00013 125 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK--KCDSIGC------SIKNLYDSSKSKSYEKD---- 192 (450)
T ss_pred CCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc--cCCcccc------ccCCCccCccCcccccC----
Confidence 3455677 888999999999999999999999999999999998 3332233 23488999999999984
Q ss_pred cccccCCCCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecC--CCCCCCCCCccccc
Q 016583 171 TLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTG--SFLDGAAPNGLFGL 248 (387)
Q Consensus 171 ~~C~~~~~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g--~~~~~~~~dGIlGL 248 (387)
++.+.+.| ++| .+.|.+++|+|+||+ +.++ ..|+++.+..+ ..+....+||||||
T Consensus 193 --------------~~~~~i~Y-G~G-sv~G~~~~Dtv~iG~------~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGL 249 (450)
T PTZ00013 193 --------------GTKVDITY-GSG-TVKGFFSKDLVTLGH------LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGL 249 (450)
T ss_pred --------------CcEEEEEE-CCc-eEEEEEEEEEEEECC------EEEc-cEEEEEEeccccccceecccccceecc
Confidence 68999999 455 589999999999996 3455 57888876542 22233457999999
Q ss_pred CCCCC------ChHHHHHhcCCC-CcceEEEecC--CCCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEE
Q 016583 249 GMDKT------SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNA 318 (387)
Q Consensus 249 g~~~~------s~~~~L~~~g~i-~~~FS~~L~~--~~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~ 318 (387)
|++.+ +++.+|++||+| +++||+||++ ...|.|+|||+|++ +.+.+.|++.....+|.|.++ +.+|...
T Consensus 250 g~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~ 328 (450)
T PTZ00013 250 GWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQT 328 (450)
T ss_pred cCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECcee
Confidence 99865 467899999999 8899999986 35799999999998 778888888777789999998 7776544
Q ss_pred eecCCcEEEcCcccceeeCHHHHHHHHHHHHH
Q 016583 319 VNFEFSAIFDSGTSFTYLNDPAYTQISETFNS 350 (387)
Q Consensus 319 ~~~~~~~iiDSGTs~~~lp~~~~~~l~~~~~~ 350 (387)
. ....+||||||+++++|+++++++.+++++
T Consensus 329 ~-~~~~aIlDSGTSli~lP~~~~~~i~~~l~~ 359 (450)
T PTZ00013 329 M-QKANVIVDSGTTTITAPSEFLNKFFANLNV 359 (450)
T ss_pred c-cccceEECCCCccccCCHHHHHHHHHHhCC
Confidence 3 356799999999999999999999888754
No 18
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=8.3e-38 Score=300.14 Aligned_cols=218 Identities=34% Similarity=0.593 Sum_probs=176.5
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCCCC
Q 016583 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (387)
Q Consensus 104 ~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (387)
+|+++|.||||||++.|++||||+++||+|. .|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~--~c--------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ--PC--------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC--CC---------------------------------------------
Confidence 4999999999999999999999999999875 21
Q ss_pred CCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCCChHHHHHhcC
Q 016583 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQG 263 (387)
Q Consensus 184 ~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s~~~~L~~~g 263 (387)
|.|.+.| ++|+.+.|.+++|+|+|++. ..++++.|||++..++.+. ..+||||||+..+++++||..+
T Consensus 34 --~~~~i~Y-g~Gs~~~G~~~~D~v~ig~~-----~~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~~~- 101 (299)
T cd05472 34 --CLYQVSY-GDGSYTTGDLATDTLTLGSS-----DVVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTASS- 101 (299)
T ss_pred --CeeeeEe-CCCceEEEEEEEEEEEeCCC-----CccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhhHh-
Confidence 3689999 68888899999999999963 1578999999998776542 4689999999999999998764
Q ss_pred CCCcceEEEecC---CCCeeEEECCCCCC--CCccccCccCCC-CCeEEEEEEEEEECCEEeecC------CcEEEcCcc
Q 016583 264 LIPNSFSMCFGS---DGTGRISFGDKGSP--GQGETPFSLRQT-HPTYNITITQVSVGGNAVNFE------FSAIFDSGT 331 (387)
Q Consensus 264 ~i~~~FS~~L~~---~~~G~l~fGg~d~~--~~~~~~~v~~~~-~~~w~v~l~~i~vgg~~~~~~------~~~iiDSGT 331 (387)
.+++||+||.+ ..+|+|+||++|+. ...++|++..+. ..+|.|+|++|+||++.+..+ ..+||||||
T Consensus 102 -~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGT 180 (299)
T cd05472 102 -YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGT 180 (299)
T ss_pred -hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCC
Confidence 36899999987 45799999999986 455566554432 358999999999999988652 479999999
Q ss_pred cceeeCHHHHHHHHHHHHHHhhccccCCCCcCCccccccccCC--cccceeee
Q 016583 332 SFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRSF--LHLQALVV 382 (387)
Q Consensus 332 s~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~~~~~~ 382 (387)
++++||+++|++|.+++.+++...... .....++.||+.+.. ..+|.|.+
T Consensus 181 t~~~lp~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~C~~~~~~~~~~~P~i~f 232 (299)
T cd05472 181 VITRLPPSAYAALRDAFRAAMAAYPRA-PGFSILDTCYDLSGFRSVSVPTVSL 232 (299)
T ss_pred cceecCHHHHHHHHHHHHHHhccCCCC-CCCCCCCccCcCCCCcCCccCCEEE
Confidence 999999999999999999887643221 112345689987643 46777765
No 19
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=5.5e-36 Score=283.92 Aligned_cols=216 Identities=30% Similarity=0.555 Sum_probs=179.1
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCCCC
Q 016583 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (387)
Q Consensus 105 Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (387)
|+++|.||||+|++.|++||||+++||+|. |..|..+.+ ....|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~-------~~~~~~~~~s~~~~~------------------ 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKH-------PRFKYDSSKSSTYKD------------------ 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccC-------CCCccCccCCceeec------------------
Confidence 789999999999999999999999999999 877654432 111378888777766
Q ss_pred CCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCC------CChHH
Q 016583 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK------TSVPS 257 (387)
Q Consensus 184 ~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~------~s~~~ 257 (387)
..|.|.+.| ++ +.+.|.+++|+|+|++. .++++.|||++...+.+ .....+||||||+.. .++++
T Consensus 56 ~~~~~~~~Y-~~-g~~~g~~~~D~v~~~~~------~~~~~~fg~~~~~~~~~-~~~~~~GilGLg~~~~~~~~~~s~~~ 126 (283)
T cd05471 56 TGCTFSITY-GD-GSVTGGLGTDTVTIGGL------TIPNQTFGCATSESGDF-SSSGFDGILGLGFPSLSVDGVPSFFD 126 (283)
T ss_pred CCCEEEEEE-CC-CeEEEEEEEeEEEECCE------EEeceEEEEEeccCCcc-cccccceEeecCCcccccccCCCHHH
Confidence 378999999 45 67899999999999963 48899999999886532 234579999999998 78999
Q ss_pred HHHhcCCC-CcceEEEecCC----CCeeEEECCCCCC-CCccccCccCCC--CCeEEEEEEEEEECCEE--e-ecCCcEE
Q 016583 258 ILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQT--HPTYNITITQVSVGGNA--V-NFEFSAI 326 (387)
Q Consensus 258 ~L~~~g~i-~~~FS~~L~~~----~~G~l~fGg~d~~-~~~~~~~v~~~~--~~~w~v~l~~i~vgg~~--~-~~~~~~i 326 (387)
||.++++| +++||+||.+. ..|.|+||++|+. +.+.+.|++... ..+|.|.+++|.|+++. . .....++
T Consensus 127 ~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~i 206 (283)
T cd05471 127 QLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAI 206 (283)
T ss_pred HHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEE
Confidence 99999999 99999999983 6899999999987 455555555444 67899999999999973 2 2346799
Q ss_pred EcCcccceeeCHHHHHHHHHHHHHHhhc
Q 016583 327 FDSGTSFTYLNDPAYTQISETFNSLAKE 354 (387)
Q Consensus 327 iDSGTs~~~lp~~~~~~l~~~~~~~~~~ 354 (387)
|||||++++||+++|++|.+++.+.+..
T Consensus 207 iDsGt~~~~lp~~~~~~l~~~~~~~~~~ 234 (283)
T cd05471 207 VDSGTSLIYLPSSVYDAILKALGAAVSS 234 (283)
T ss_pred EecCCCCEeCCHHHHHHHHHHhCCcccc
Confidence 9999999999999999999999887664
No 20
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=6.6e-36 Score=283.42 Aligned_cols=189 Identities=38% Similarity=0.761 Sum_probs=153.9
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeeecC--CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCC
Q 016583 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD--CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPS 181 (387)
Q Consensus 104 ~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~--C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~ 181 (387)
.|+++|.||||+|++.|++||||+++||+|. |..|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------- 38 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------- 38 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------------
Confidence 6999999999999999999999999999984 3222
Q ss_pred CCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCC-CCCCCCcccccCCCCCChHHHHH
Q 016583 182 AGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFL-DGAAPNGLFGLGMDKTSVPSILA 260 (387)
Q Consensus 182 ~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~-~~~~~dGIlGLg~~~~s~~~~L~ 260 (387)
.|.|.+.| +|++.+.|.+++|+|+|+..++ ...++++.|||+..+.+.+. .....|||||||++..++++||.
T Consensus 39 ---~c~~~i~Y-gd~~~~~G~~~~D~v~~~~~~~--~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~ 112 (273)
T cd05475 39 ---QCDYEIEY-ADGGSSMGVLVTDIFSLKLTNG--SRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLA 112 (273)
T ss_pred ---cCccEeEe-CCCCceEEEEEEEEEEEeecCC--CcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHH
Confidence 36899999 6788999999999999975321 24678999999987765432 33457999999999999999999
Q ss_pred hcCCCCcceEEEecCCCCeeEEECCCCCC--CCccccCccCCCCCeEEEEEEEEEECCEEeec-CCcEEEcCcccceeeC
Q 016583 261 NQGLIPNSFSMCFGSDGTGRISFGDKGSP--GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-EFSAIFDSGTSFTYLN 337 (387)
Q Consensus 261 ~~g~i~~~FS~~L~~~~~G~l~fGg~d~~--~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~-~~~~iiDSGTs~~~lp 337 (387)
++++|+++||+||+++.+|.|+||+.... ...++|++..+...+|.|++.+|+||++.+.. ...+||||||++++||
T Consensus 113 ~~~~i~~~Fs~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp 192 (273)
T cd05475 113 SQGIIKNVIGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFN 192 (273)
T ss_pred hcCCcCceEEEEccCCCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcC
Confidence 99988999999999866799999954321 23445554333347899999999999986543 3579999999999999
Q ss_pred HHHH
Q 016583 338 DPAY 341 (387)
Q Consensus 338 ~~~~ 341 (387)
+++|
T Consensus 193 ~~~y 196 (273)
T cd05475 193 AQAY 196 (273)
T ss_pred Cccc
Confidence 9987
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.4e-34 Score=278.95 Aligned_cols=217 Identities=29% Similarity=0.534 Sum_probs=181.1
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCCC
Q 016583 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA 182 (387)
Q Consensus 104 ~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~ 182 (387)
.|+++|.||||+|++.|++||||+++||++. |..|. .| ..+..|++.+|+|++..
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~--~~------~~~~~y~~~~S~t~~~~---------------- 56 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCS--SC------ASSGFYNPSKSSTFSNQ---------------- 56 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHT--HH------CTSC-BBGGGSTTEEEE----------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccc--cc------ccccccccccccccccc----------------
Confidence 4999999999999999999999999999998 76651 11 13388999999999985
Q ss_pred CCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCC-------CCh
Q 016583 183 GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK-------TSV 255 (387)
Q Consensus 183 ~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~-------~s~ 255 (387)
++.+.+.| +++. ++|.+++|+|+|++ +.+.++.||++....+........+||||||+.. .++
T Consensus 57 --~~~~~~~y-~~g~-~~G~~~~D~v~ig~------~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~ 126 (317)
T PF00026_consen 57 --GKPFSISY-GDGS-VSGNLVSDTVSIGG------LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTF 126 (317)
T ss_dssp --EEEEEEEE-TTEE-EEEEEEEEEEEETT------EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SH
T ss_pred --eeeeeeec-cCcc-cccccccceEeeee------ccccccceeccccccccccccccccccccccCCcccccccCCcc
Confidence 67899999 5655 99999999999996 5688999999999755433344679999999743 478
Q ss_pred HHHHHhcCCC-CcceEEEecCC--CCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEEe-e-cCCcEEEcC
Q 016583 256 PSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAV-N-FEFSAIFDS 329 (387)
Q Consensus 256 ~~~L~~~g~i-~~~FS~~L~~~--~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~-~-~~~~~iiDS 329 (387)
+.+|.++|+| +++||+||.+. ..|.|+|||+|++ +.+.+.|++.....+|.|.+++|.++++.. . .+..++|||
T Consensus 127 ~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dt 206 (317)
T PF00026_consen 127 LDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFSSSGQQAILDT 206 (317)
T ss_dssp HHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEEEEEEEEEEET
T ss_pred eecchhhccccccccceeeeecccccchheeeccccccccCceeccCcccccccccccccccccccccccccceeeeccc
Confidence 8999999999 99999999984 4799999999998 677777887777889999999999999933 2 235799999
Q ss_pred cccceeeCHHHHHHHHHHHHHHhhc
Q 016583 330 GTSFTYLNDPAYTQISETFNSLAKE 354 (387)
Q Consensus 330 GTs~~~lp~~~~~~l~~~~~~~~~~ 354 (387)
||++++||.+++++|++++.+....
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~~~~ 231 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGSYSD 231 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTEEEC
T ss_pred ccccccccchhhHHHHhhhcccccc
Confidence 9999999999999999999877553
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.4e-33 Score=268.34 Aligned_cols=196 Identities=27% Similarity=0.473 Sum_probs=161.1
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCCCC
Q 016583 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (387)
Q Consensus 104 ~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (387)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 58999999999999999999999999995
Q ss_pred CCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCC----------
Q 016583 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---------- 253 (387)
Q Consensus 184 ~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~---------- 253 (387)
.|.+.| ++++.+.|.+++|+|+|++ ..++++.|||+++.. ..+||||||+...
T Consensus 31 ---~~~~~Y-~~g~~~~G~~~~D~v~~g~------~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~ 93 (295)
T cd05474 31 ---DFSISY-GDGTSASGTWGTDTVSIGG------ATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTY 93 (295)
T ss_pred ---eeEEEe-ccCCcEEEEEEEEEEEECC------eEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcC
Confidence 267889 6778999999999999986 357899999998742 3589999999876
Q ss_pred -ChHHHHHhcCCC-CcceEEEecC--CCCeeEEECCCCCC-CCccccCccCCCC------CeEEEEEEEEEECCEEee--
Q 016583 254 -SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTH------PTYNITITQVSVGGNAVN-- 320 (387)
Q Consensus 254 -s~~~~L~~~g~i-~~~FS~~L~~--~~~G~l~fGg~d~~-~~~~~~~v~~~~~------~~w~v~l~~i~vgg~~~~-- 320 (387)
++++||.++|+| ++.||+||.+ ...|.|+|||+|+. +.+.+.|++.... .+|.|++++|+|+++.+.
T Consensus 94 ~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~ 173 (295)
T cd05474 94 PNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTT 173 (295)
T ss_pred CCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccc
Confidence 689999999999 8999999998 35799999999987 4444444443332 679999999999998753
Q ss_pred ---cCCcEEEcCcccceeeCHHHHHHHHHHHHHHhhccccCCCCcCCcccccccc
Q 016583 321 ---FEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLR 372 (387)
Q Consensus 321 ---~~~~~iiDSGTs~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 372 (387)
.+..++|||||++++||++++++|.++++++.... .......|+...
T Consensus 174 ~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~-----~~~~~~~C~~~~ 223 (295)
T cd05474 174 LLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD-----EGLYVVDCDAKD 223 (295)
T ss_pred ccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC-----CcEEEEeCCCCC
Confidence 23579999999999999999999999998765432 112235676643
No 23
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.7e-33 Score=264.45 Aligned_cols=176 Identities=34% Similarity=0.650 Sum_probs=148.9
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCCCC
Q 016583 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (387)
Q Consensus 104 ~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (387)
+|+++|.||||+|++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 499999999999999999999999999975
Q ss_pred CCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCCChHHHHHhcC
Q 016583 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQG 263 (387)
Q Consensus 184 ~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s~~~~L~~~g 263 (387)
|.|.+.| +|++.+.|.+++|+|+|++.. ..++++.|||++...+ ......+||||||+...|+++||..++
T Consensus 31 --~~~~~~Y-~dg~~~~G~~~~D~v~~g~~~----~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s~~~ql~~~~ 101 (265)
T cd05476 31 --CSYEYSY-GDGSSTSGVLATETFTFGDSS----VSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLSLVSQLGSTG 101 (265)
T ss_pred --CceEeEe-CCCceeeeeEEEEEEEecCCC----CccCCEEEEecccccC--CccCCCCEEEECCCCcccHHHHhhccc
Confidence 2578899 678999999999999999631 2578999999998876 233467999999999999999999887
Q ss_pred CCCcceEEEecC----CCCeeEEECCCCCC---CCccccCccCC-CCCeEEEEEEEEEECCEEeec-----------CCc
Q 016583 264 LIPNSFSMCFGS----DGTGRISFGDKGSP---GQGETPFSLRQ-THPTYNITITQVSVGGNAVNF-----------EFS 324 (387)
Q Consensus 264 ~i~~~FS~~L~~----~~~G~l~fGg~d~~---~~~~~~~v~~~-~~~~w~v~l~~i~vgg~~~~~-----------~~~ 324 (387)
++||+||.+ +..|+|+||++|+. ...++|++..+ ...+|.|++++|+|+++.+.+ ...
T Consensus 102 ---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 178 (265)
T cd05476 102 ---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGG 178 (265)
T ss_pred ---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCc
Confidence 899999986 34799999999985 44555555432 246899999999999998752 356
Q ss_pred EEEcCcccceeeCHHHH
Q 016583 325 AIFDSGTSFTYLNDPAY 341 (387)
Q Consensus 325 ~iiDSGTs~~~lp~~~~ 341 (387)
+||||||++++||+++|
T Consensus 179 ai~DTGTs~~~lp~~~~ 195 (265)
T cd05476 179 TIIDSGTTLTYLPDPAY 195 (265)
T ss_pred EEEeCCCcceEcCcccc
Confidence 99999999999999998
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=7.2e-31 Score=230.14 Aligned_cols=157 Identities=38% Similarity=0.757 Sum_probs=128.5
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCC----CCC
Q 016583 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK----QCP 180 (387)
Q Consensus 105 Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~----~C~ 180 (387)
|+++|.||||+|++.|++||||+++|++|. . +.|+|.+|+||+.++|++++|.... .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~-----------~------~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~ 63 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP-----------D------PPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCC 63 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET---------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCT
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC-----------C------cccCCccCCcccccCCCCcchhhcccccccCC
Confidence 899999999999999999999999999882 1 8899999999999999999999753 455
Q ss_pred CCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCCChHHHHH
Q 016583 181 SAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILA 260 (387)
Q Consensus 181 ~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~s~~~~L~ 260 (387)
..++.|.|.+.| .+++.+.|.+++|+|+++...+. ...+.++.|||++...+.+. ..+||||||++++||++||.
T Consensus 64 ~~~~~C~y~~~y-~~~s~~~G~l~~D~~~~~~~~~~-~~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 64 CSNNSCPYSQSY-GDGSSSSGFLASDTLTFGSSSGG-SNSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp CESSEEEEEEEE-TTTEEEEEEEEEEEEEEEEESSS-SEEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHHHHH
T ss_pred CCcCcccceeec-CCCccccCceEEEEEEecCCCCC-CceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHHHHH
Confidence 566789999999 68999999999999999975422 25678999999999887653 46899999999999999998
Q ss_pred hcCCCCcceEEEecC---CCCeeEEECC
Q 016583 261 NQGLIPNSFSMCFGS---DGTGRISFGD 285 (387)
Q Consensus 261 ~~g~i~~~FS~~L~~---~~~G~l~fGg 285 (387)
++ ..++|||||.+ +..|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 87 57899999998 4679999996
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=2.5e-22 Score=163.82 Aligned_cols=107 Identities=31% Similarity=0.554 Sum_probs=89.8
Q ss_pred EEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCC-CCCCCCCcccccCCCcccccCCCCCCCCC
Q 016583 107 TNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIY-SPNTSSTSSKVPCNSTLCELQKQCPSAGS 184 (387)
Q Consensus 107 ~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~y-dp~~SsT~~~~~C~~~~C~~~~~C~~~~~ 184 (387)
++|.||||+|++.|+|||||+++||+|. |..|..+. ++.| ||+.|++++..
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~---------~~~~~~~~~sst~~~~------------------ 53 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS---------HSSYDDPSASSTYSDN------------------ 53 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc---------ccccCCcCCCCCCCCC------------------
Confidence 4789999999999999999999999999 76665432 2455 99999999884
Q ss_pred CCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCccccc
Q 016583 185 NCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGL 248 (387)
Q Consensus 185 ~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGL 248 (387)
.|.|.+.| +++ .+.|.+++|+|+|++ ..++++.|||++...+.++.....+|||||
T Consensus 54 ~~~~~~~Y-~~g-~~~g~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 54 GCTFSITY-GTG-SLSGGLSTDTVSIGD------IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CcEEEEEe-CCC-eEEEEEEEEEEEECC------EEECCEEEEEEEecCCccccccccccccCC
Confidence 78999999 565 578999999999985 458899999999988765554567999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.20 E-value=5.1e-11 Score=104.08 Aligned_cols=79 Identities=28% Similarity=0.558 Sum_probs=58.3
Q ss_pred eEEEEEEEEEECCEEeecCC----------cEEEcCcccceeeCHHHHHHHHHHHHHHhhccccC--CCCcCCccccccc
Q 016583 304 TYNITITQVSVGGNAVNFEF----------SAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRET--STSDLPFEYCYVL 371 (387)
Q Consensus 304 ~w~v~l~~i~vgg~~~~~~~----------~~iiDSGTs~~~lp~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~C~~~ 371 (387)
+|+|+|++|+||++++.++. .++|||||++++||+++|++|+++|.+++...... ......+++||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 58999999999999998653 48999999999999999999999999999987532 2445778999999
Q ss_pred cCC------cccceeee
Q 016583 372 RSF------LHLQALVV 382 (387)
Q Consensus 372 ~~~------~~~~~~~~ 382 (387)
+.. ..+|.|.+
T Consensus 81 ~~~~~~~~~~~~P~i~l 97 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITL 97 (161)
T ss_dssp GCS-EETTEESS--EEE
T ss_pred cccccccccccCCeEEE
Confidence 993 67777765
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.89 E-value=6.1e-05 Score=58.95 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=62.6
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCCCCC
Q 016583 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA 182 (387)
Q Consensus 104 ~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C~~~ 182 (387)
.|++++.|+ .+++.+++|||++.+|+... ...+. . ...
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~--------------~-------~~~------------------ 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG--------------L-------PLT------------------ 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC--------------C-------Ccc------------------
Confidence 488999999 79999999999999999875 11111 0 000
Q ss_pred CCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCC
Q 016583 183 GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM 250 (387)
Q Consensus 183 ~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~ 250 (387)
......+.. .+|.........+.+++|+ ..+.++.+........ ..|||+|+.+
T Consensus 41 -~~~~~~~~~-~~G~~~~~~~~~~~i~ig~------~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 41 -LGGKVTVQT-ANGRVRAARVRLDSLQIGG------ITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred -CCCcEEEEe-cCCCccceEEEcceEEECC------cEEeccEEEEeCCccc------CCceEeChHH
Confidence 123455665 4555566666689999985 4567777776654321 3689999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.66 E-value=0.16 Score=42.02 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=59.5
Q ss_pred CCceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCCCC
Q 016583 101 LGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQC 179 (387)
Q Consensus 101 ~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~~C 179 (387)
.++.|++++.|. .+++.+++|||++.+-+... -... . .++..
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L--------------g-l~~~~-------------------- 50 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL--------------G-LDLNR-------------------- 50 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc--------------C-CCccc--------------------
Confidence 457799999997 78999999999999988764 1000 0 11110
Q ss_pred CCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCC
Q 016583 180 PSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM 250 (387)
Q Consensus 180 ~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~ 250 (387)
......+.= .+|......+.-|.+.+|+ ....++.+.+..... ..+|+||+.+
T Consensus 51 ----~~~~~~~~t-a~G~~~~~~~~l~~l~iG~------~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 51 ----LGYTVTVST-ANGQIKAARVTLDRVAIGG------IVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred ----CCceEEEEe-CCCcEEEEEEEeCEEEECC------EEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 011222222 3444444566889999996 567788876654221 1269999865
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.39 E-value=0.13 Score=39.17 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.2
Q ss_pred EEEecCCCeEEEEEEeCCCCceeeecC
Q 016583 108 NVSVGQPALSFIVALDTGSDLFWLPCD 134 (387)
Q Consensus 108 ~i~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (387)
++.|+ .+++.+++|||++.+.+...
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 56677 78999999999999888765
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.35 E-value=0.45 Score=39.40 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=26.8
Q ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceeeecC
Q 016583 103 FLHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (387)
Q Consensus 103 ~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (387)
..+++++.|+ ++++.+++|||++..++...
T Consensus 15 ~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 15 PMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 4578999998 88999999999999999775
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.56 E-value=0.15 Score=39.68 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=25.3
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeeecC
Q 016583 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (387)
Q Consensus 105 Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (387)
||+++.|+ .+++.+++||||+..++..+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57889998 89999999999999999875
No 32
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=89.59 E-value=0.72 Score=34.22 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=28.0
Q ss_pred CceEEEEEEecCCCeEEEEEEeCCCCceeeecC
Q 016583 102 GFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (387)
Q Consensus 102 ~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (387)
.+.+++++.|| .+.+.+++|||++...++..
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHH
Confidence 46788999999 79999999999999999876
No 33
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=87.44 E-value=4.7 Score=39.46 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=22.2
Q ss_pred CceEE-EEEEe-cCC-CeEE-EEEEeCCCCceeeecC
Q 016583 102 GFLHY-TNVSV-GQP-ALSF-IVALDTGSDLFWLPCD 134 (387)
Q Consensus 102 ~~~Y~-~~i~i-GtP-~q~~-~v~vDTGS~~~Wv~~~ 134 (387)
+..|+ ++|-+ ||- =|.+ +|++||||.-+-|...
T Consensus 22 N~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~s 58 (370)
T PF11925_consen 22 NIPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFAS 58 (370)
T ss_pred cceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHh
Confidence 34443 44444 553 3666 8999999998888764
No 34
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=86.10 E-value=1.2 Score=36.72 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCCeEEEEEEEEEECCEEeecCCcEEEcCcccceeeCHHHHHHH
Q 016583 301 THPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (387)
Q Consensus 301 ~~~~w~v~l~~i~vgg~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (387)
..++|.+. +.|||+. ..++||||.+.+.++++..+++
T Consensus 8 ~~g~~~v~---~~InG~~----~~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRN----VRFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEE----EEEEEECCCCcEEcCHHHHHHc
Confidence 34566554 6788874 4699999999999999988776
No 35
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=84.49 E-value=1.5 Score=34.28 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.2
Q ss_pred EEEEEecCCCeEEEEEEeCCCCceeeecC
Q 016583 106 YTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (387)
Q Consensus 106 ~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (387)
+++|.|. .+++.+++||||+.+-++..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 3677887 78999999999999999775
No 36
>PF13650 Asp_protease_2: Aspartyl protease
Probab=84.44 E-value=1.5 Score=33.11 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=24.4
Q ss_pred EEECCEEeecCCcEEEcCcccceeeCHHHHHHH
Q 016583 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (387)
Q Consensus 312 i~vgg~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (387)
++|||+.+ .++||||++.+.+.++.++++
T Consensus 3 v~vng~~~----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE----EEEEcCCCCcEEECHHHHHHc
Confidence 67788743 699999999999999888776
No 37
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=79.29 E-value=3.5 Score=31.81 Aligned_cols=32 Identities=16% Similarity=0.458 Sum_probs=26.7
Q ss_pred EEEECCEEeecCCcEEEcCcccceeeCHHHHHHHHH
Q 016583 311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISE 346 (387)
Q Consensus 311 ~i~vgg~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~ 346 (387)
.+.|||+.+ ...||||++.+.++++.+..+-.
T Consensus 4 ~~~Ing~~i----~~lvDTGA~~svis~~~~~~lg~ 35 (91)
T cd05484 4 TLLVNGKPL----KFQLDTGSAITVISEKTWRKLGS 35 (91)
T ss_pred EEEECCEEE----EEEEcCCcceEEeCHHHHHHhCC
Confidence 367888876 49999999999999999887643
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=77.05 E-value=4.9 Score=29.69 Aligned_cols=29 Identities=28% Similarity=0.650 Sum_probs=24.6
Q ss_pred EEECCEEeecCCcEEEcCcccceeeCHHHHHHH
Q 016583 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (387)
Q Consensus 312 i~vgg~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (387)
+.++|+.+ .+++|||.+-.+++.+..+.+
T Consensus 13 ~~I~g~~~----~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV----KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE----EEEEeCCCcceecCHHHHHHh
Confidence 66787665 399999999999999988776
No 39
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=76.35 E-value=5.5 Score=30.33 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=24.6
Q ss_pred EEEECCEEeecCCcEEEcCcccceeeCHHHHHHHH
Q 016583 311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQIS 345 (387)
Q Consensus 311 ~i~vgg~~~~~~~~~iiDSGTs~~~lp~~~~~~l~ 345 (387)
.+.||++.+ .++||||++.+.++.+..+.+.
T Consensus 6 ~v~i~~~~~----~~llDTGa~~s~i~~~~~~~l~ 36 (96)
T cd05483 6 PVTINGQPV----RFLLDTGASTTVISEELAERLG 36 (96)
T ss_pred EEEECCEEE----EEEEECCCCcEEcCHHHHHHcC
Confidence 367777654 5999999999999998776653
No 40
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=74.95 E-value=28 Score=31.41 Aligned_cols=41 Identities=22% Similarity=0.100 Sum_probs=33.4
Q ss_pred CCceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecC
Q 016583 92 GNDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (387)
Q Consensus 92 g~~~~~~-~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (387)
|..++.+ ...++.|.++..|- .|++..++|||-+.+-++..
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~ 133 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEE 133 (215)
T ss_pred CceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHH
Confidence 3345556 56778899999998 99999999999999888765
No 41
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=74.43 E-value=4.4 Score=31.39 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.3
Q ss_pred EEEecCCCeEEEEEEeCCCCceeeecC
Q 016583 108 NVSVGQPALSFIVALDTGSDLFWLPCD 134 (387)
Q Consensus 108 ~i~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (387)
.+.|+ .|.+.+++|||.+++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 89999999999999999764
No 42
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=71.33 E-value=5.3 Score=30.54 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=20.9
Q ss_pred EEEecCCCeEEEEEEeCCCCceeeecC
Q 016583 108 NVSVGQPALSFIVALDTGSDLFWLPCD 134 (387)
Q Consensus 108 ~i~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (387)
.+.|. .+++.+++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 34555 78999999999999999775
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=69.69 E-value=7.1 Score=29.82 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=24.5
Q ss_pred EEECCEEeecCCcEEEcCcccceeeCHHHHHHH
Q 016583 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (387)
Q Consensus 312 i~vgg~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (387)
+.|||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~----~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI----VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE----EEEEECCCCeEEECHHHhhhc
Confidence 56778764 589999999999999988775
No 44
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=63.99 E-value=11 Score=30.97 Aligned_cols=30 Identities=27% Similarity=0.446 Sum_probs=24.2
Q ss_pred EEECCEEeecCCcEEEcCcccceeeCHHHHHHHH
Q 016583 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQIS 345 (387)
Q Consensus 312 i~vgg~~~~~~~~~iiDSGTs~~~lp~~~~~~l~ 345 (387)
+.|||..+ .++||||++.+.++++..+.+-
T Consensus 21 ~~Ing~~~----~~LvDTGAs~s~Is~~~a~~lg 50 (124)
T cd05479 21 VEINGVPV----KAFVDSGAQMTIMSKACAEKCG 50 (124)
T ss_pred EEECCEEE----EEEEeCCCceEEeCHHHHHHcC
Confidence 56777754 5899999999999999877643
No 45
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=62.46 E-value=7.2 Score=30.35 Aligned_cols=30 Identities=17% Similarity=0.592 Sum_probs=22.9
Q ss_pred EEEECCEEeecCCcEEEcCcccceeeCHHHHHHH
Q 016583 311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (387)
Q Consensus 311 ~i~vgg~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (387)
.|.++|+.+ .++||||+..+.++++.+...
T Consensus 9 ~v~i~g~~i----~~LlDTGA~vsiI~~~~~~~~ 38 (100)
T PF00077_consen 9 TVKINGKKI----KALLDTGADVSIISEKDWKKL 38 (100)
T ss_dssp EEEETTEEE----EEEEETTBSSEEESSGGSSST
T ss_pred EEeECCEEE----EEEEecCCCcceecccccccc
Confidence 366677754 599999999999998765443
No 46
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=56.65 E-value=25 Score=31.71 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=27.9
Q ss_pred CCeEEEEEEEEEECCEEeecCCcEEEcCcccceeeCHHHHHHH
Q 016583 302 HPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (387)
Q Consensus 302 ~~~w~v~l~~i~vgg~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (387)
+++|.+ ...|||+.+ ..++|||.|.+.++++..+.+
T Consensus 103 ~GHF~a---~~~VNGk~v----~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEA---NGRVNGKKV----DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEE---EEEECCEEE----EEEEecCcceeecCHHHHHHh
Confidence 455554 478899886 489999999999999876554
No 47
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=54.30 E-value=10 Score=31.43 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=25.7
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCC
Q 016583 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCV 139 (387)
Q Consensus 104 ~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~ 139 (387)
..|+++.|+ .+++++++|||...+-+... +..|.
T Consensus 24 mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 24 MLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp --EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred eEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 478999999 89999999999999999876 35553
No 48
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=50.74 E-value=13 Score=28.92 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=24.3
Q ss_pred EEECCEEeecCCcEEEcCcccceeeCHHHHHHHH
Q 016583 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQIS 345 (387)
Q Consensus 312 i~vgg~~~~~~~~~iiDSGTs~~~lp~~~~~~l~ 345 (387)
+.++|+ .+-.+.+|||.+...+|...|+.+-
T Consensus 3 ~~i~g~---~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK---QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc---eeEEEEEecCCEEEeccHHHHhhhc
Confidence 556663 2235899999999999999888875
No 49
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=49.92 E-value=22 Score=30.91 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=22.9
Q ss_pred EEEEecCCCeEEEEEEeCCCCceeeecC
Q 016583 107 TNVSVGQPALSFIVALDTGSDLFWLPCD 134 (387)
Q Consensus 107 ~~i~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (387)
..+.+++-..+++++|||||..-++...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 4556666689999999999999888764
No 50
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=48.72 E-value=26 Score=29.04 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=23.2
Q ss_pred EEECCEEeecCCcEEEcCcccceeeCHHHHHHH
Q 016583 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (387)
Q Consensus 312 i~vgg~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (387)
+++||+.+ .|+||||+..+.++.+..+++
T Consensus 29 ~~ing~~v----kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV----KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE----EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE----EEEEeCCCCccccCHHHHHHc
Confidence 67888876 599999999999999988873
No 51
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=44.12 E-value=17 Score=29.10 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=18.7
Q ss_pred CcEEEcCccccee-eCHHHHHHH
Q 016583 323 FSAIFDSGTSFTY-LNDPAYTQI 344 (387)
Q Consensus 323 ~~~iiDSGTs~~~-lp~~~~~~l 344 (387)
-.++||||.+... +|.++++++
T Consensus 17 v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 17 VRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEECCCCeEEecCHHHHHHc
Confidence 4699999999886 999988775
No 52
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=43.22 E-value=9 Score=30.18 Aligned_cols=21 Identities=29% Similarity=0.115 Sum_probs=8.9
Q ss_pred CCCcccccchhhHHHHHhhhhc
Q 016583 1 MASSYRNSPVCVLLILLSCCAG 22 (387)
Q Consensus 1 ~~~~~~~~~~~~l~~ll~~~~~ 22 (387)
|| |....+|.|+|.+|+++++
T Consensus 1 Ma-SK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISS 21 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHh
Confidence 77 4443333333333344443
No 53
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.54 E-value=19 Score=29.75 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=19.0
Q ss_pred EEEcCccc-ceeeCHHHHHHHHH
Q 016583 325 AIFDSGTS-FTYLNDPAYTQISE 346 (387)
Q Consensus 325 ~iiDSGTs-~~~lp~~~~~~l~~ 346 (387)
.+||||-+ ++.+|.++++++-.
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~ 51 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGL 51 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCC
Confidence 58999999 99999999887643
No 54
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=30.63 E-value=41 Score=26.16 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=16.7
Q ss_pred eEEEEEEeCCCCceeeecC
Q 016583 116 LSFIVALDTGSDLFWLPCD 134 (387)
Q Consensus 116 q~~~v~vDTGS~~~Wv~~~ 134 (387)
+++.+.+|||++..-++-.
T Consensus 9 ~~v~~~vDtGA~vnllp~~ 27 (93)
T cd05481 9 QSVKFQLDTGATCNVLPLR 27 (93)
T ss_pred eeEEEEEecCCEEEeccHH
Confidence 8999999999998888764
No 55
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=29.54 E-value=73 Score=25.42 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEecCCC----eEEEEEEeCCCCcee-eec
Q 016583 107 TNVSVGQPA----LSFIVALDTGSDLFW-LPC 133 (387)
Q Consensus 107 ~~i~iGtP~----q~~~v~vDTGS~~~W-v~~ 133 (387)
+++.|..|. -++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 567787773 267899999998664 554
No 56
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=22.11 E-value=1.1e+02 Score=28.43 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=22.7
Q ss_pred ceEEE---EEEecC---CCeEEEEEEeCCCCceeeecC
Q 016583 103 FLHYT---NVSVGQ---PALSFIVALDTGSDLFWLPCD 134 (387)
Q Consensus 103 ~~Y~~---~i~iGt---P~q~~~v~vDTGS~~~Wv~~~ 134 (387)
..|.+ .|.||. +.....+++|||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 45554 467873 223467999999999999874
No 57
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=21.02 E-value=1e+02 Score=28.79 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=19.7
Q ss_pred EEEECCEEeecCCcEEEcCcccceeeCHHH
Q 016583 311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPA 340 (387)
Q Consensus 311 ~i~vgg~~~~~~~~~iiDSGTs~~~lp~~~ 340 (387)
.|+||.-.- +..++||||++.+++|..-
T Consensus 4 ~i~vGtP~Q--~~~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 4 PVKIGTPPQ--TLNLDLDTGSSDLWVFSSE 31 (278)
T ss_pred eEEECCCCc--EEEEEEeCCCCceeEeeCC
Confidence 466775111 1359999999999999753
No 58
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.01 E-value=1.1e+02 Score=21.35 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=16.5
Q ss_pred EEecCCCeEEEEEEeCCCCceeeec
Q 016583 109 VSVGQPALSFIVALDTGSDLFWLPC 133 (387)
Q Consensus 109 i~iGtP~q~~~v~vDTGS~~~Wv~~ 133 (387)
+.++ ...+.+++|||+...-+..
T Consensus 3 ~~~~--~~~~~~liDtgs~~~~~~~ 25 (92)
T cd00303 3 GKIN--GVPVRALVDSGASVNFISE 25 (92)
T ss_pred EEEC--CEEEEEEEcCCCcccccCH
Confidence 4455 4788999999988654443
Done!