Query 016584
Match_columns 387
No_of_seqs 205 out of 1520
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02608 L-ascorbate peroxidas 100.0 1.9E-70 4.2E-75 532.9 24.2 252 92-368 3-254 (289)
2 PLN02879 L-ascorbate peroxidas 100.0 4.1E-69 8.9E-74 515.5 22.4 238 97-359 11-248 (251)
3 cd00691 ascorbate_peroxidase A 100.0 5E-67 1.1E-71 502.6 24.4 242 97-360 7-252 (253)
4 PLN02364 L-ascorbate peroxidas 100.0 6.3E-67 1.4E-71 500.8 22.3 239 96-359 9-248 (250)
5 cd00693 secretory_peroxidase H 100.0 4.1E-67 8.8E-72 513.7 20.5 255 98-371 10-296 (298)
6 PLN03030 cationic peroxidase; 100.0 2.5E-67 5.4E-72 517.8 18.6 255 98-371 33-321 (324)
7 cd00692 ligninase Ligninase an 100.0 1.6E-61 3.5E-66 477.9 24.6 268 95-386 10-303 (328)
8 cd00649 catalase_peroxidase_1 100.0 5.3E-62 1.1E-66 489.2 20.8 283 64-360 13-397 (409)
9 TIGR00198 cat_per_HPI catalase 100.0 1.8E-57 3.8E-62 481.8 21.3 297 64-374 23-424 (716)
10 cd00314 plant_peroxidase_like 100.0 8E-57 1.7E-61 431.2 20.4 232 105-355 2-255 (255)
11 PRK15061 catalase/hydroperoxid 100.0 6.3E-57 1.4E-61 475.4 21.3 296 64-373 25-429 (726)
12 cd08201 plant_peroxidase_like_ 100.0 6.1E-56 1.3E-60 425.1 16.3 241 77-355 13-264 (264)
13 PF00141 peroxidase: Peroxidas 100.0 1.8E-56 4E-61 424.3 9.7 215 106-338 1-230 (230)
14 cd08200 catalase_peroxidase_2 100.0 1.3E-48 2.8E-53 378.9 20.5 231 101-357 14-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.5E-43 3.2E-48 375.9 21.3 238 102-363 426-714 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2.3E-42 5E-47 365.1 21.1 224 112-358 447-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 3.9E-42 8.4E-47 349.4 15.2 282 63-358 37-417 (730)
18 COG0376 KatG Catalase (peroxid 99.8 3E-18 6.5E-23 175.7 14.2 224 112-358 457-726 (730)
19 PF11895 DUF3415: Domain of un 68.5 4.4 9.4E-05 33.1 2.4 44 341-386 2-47 (80)
20 PTZ00411 transaldolase-like pr 33.7 41 0.00088 34.4 3.3 92 167-260 148-252 (333)
21 PRK12346 transaldolase A; Prov 32.3 39 0.00085 34.2 3.0 92 167-260 137-241 (316)
22 PRK12309 transaldolase/EF-hand 21.8 1.3E+02 0.0027 31.5 4.5 91 167-260 142-246 (391)
23 PF00043 GST_C: Glutathione S- 20.6 2.1E+02 0.0045 22.1 4.6 38 164-201 32-74 (95)
24 PRK05269 transaldolase B; Prov 20.3 80 0.0017 32.0 2.6 92 167-260 138-242 (318)
No 1
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.9e-70 Score=532.92 Aligned_cols=252 Identities=51% Similarity=0.832 Sum_probs=230.1
Q ss_pred CccCCCCChhHHHHHHHHHHHHHHcCCchhhHHHHHhhhccCCCCCCCCCCCCCCCCccccchhhhhhhcccCcHHHHHH
Q 016584 92 TTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKL 171 (387)
Q Consensus 92 ~p~~~~~~~~~~~~v~~~i~~~l~~~~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E~~~~~N~gL~~~~~~ 171 (387)
.|.+.+..-.+++.++++|+++++++.++|.||||+||||+|||+.+ ++|||||||++++|+++++|.||.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~----~~gGcDgSIll~~E~~~~~N~gL~~g~~v 78 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKT----KTGGPNGSIRNEEEYSHGANNGLKIAIDL 78 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCC----CCCCCCeeeecccccCCccccchHHHHHH
Confidence 46666666788999999999999999999999999999999999987 68999999999999999999999889999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCCCCCChHHHHHHHHHcCCChhhh
Q 016584 172 IQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEI 251 (387)
Q Consensus 172 i~~iK~~~~~VScADiiaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~L~~~F~~~GLs~~Em 251 (387)
|++||++++.|||||||+||+|+||+++|||.|+|++||+|++++. ++++||+ |..+++++++.|+++||+++||
T Consensus 79 id~iK~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~--p~~~~~~l~~~F~~~Gl~~~D~ 153 (289)
T PLN02608 79 CEPVKAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPD--AKKGAKHLRDVFYRMGLSDKDI 153 (289)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999999999999999999999998874 5578999 8899999999999999999999
Q ss_pred HHhccccccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccChHHHHHhhhccCCCcccccccccccCCcchHHH
Q 016584 252 VALSGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVY 331 (387)
Q Consensus 252 VALsGaHTIG~~hc~~~g~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yyk~ll~~~g~~~llL~SD~~L~~D~~t~~~ 331 (387)
|+|+||||||++||.++++.. +|+.||.+|||+||+||+.+..+++++|+||++|+.|++|+.+
T Consensus 154 VaLsGAHTiG~ahc~r~g~~g----------------~~~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~ 217 (289)
T PLN02608 154 VALSGGHTLGRAHPERSGFDG----------------PWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPY 217 (289)
T ss_pred hhhccccccccccccCCCCCC----------------CCCCCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHH
Confidence 999999999999998754321 2567899999999999999844456669999999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCCeee
Q 016584 332 AEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVL 368 (387)
Q Consensus 332 V~~yA~d~~~F~~dFa~Am~KM~~lgv~t~~~~gv~l 368 (387)
|+.||.|++.|+++|+.||+||+++||+|+..||+..
T Consensus 218 V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~ 254 (289)
T PLN02608 218 VELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKK 254 (289)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccc
Confidence 9999999999999999999999999999998665443
No 2
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=4.1e-69 Score=515.46 Aligned_cols=238 Identities=49% Similarity=0.852 Sum_probs=219.9
Q ss_pred CCChhHHHHHHHHHHHHHHcCCchhhHHHHHhhhccCCCCCCCCCCCCCCCCccccchhhhhhhcccCcHHHHHHHHHHh
Q 016584 97 ASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIK 176 (387)
Q Consensus 97 ~~~~~~~~~v~~~i~~~l~~~~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E~~~~~N~gL~~~~~~i~~iK 176 (387)
+...++++.++++|.++++++.++|.||||+||||+|||+.+ ++|||||||+|.+|+++|+|.||..++++|++||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~----~~GG~~Gsirf~~E~~~~~N~gL~~~~~~i~~iK 86 (251)
T PLN02879 11 EEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKT----KTGGPFGTIRHPQELAHDANNGLDIAVRLLDPIK 86 (251)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCC----CCCCCCeeecChhhccCCCcCChHHHHHHHHHHH
Confidence 333578889999999999999999999999999999999987 5799999999999999999999988999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCCCCCChHHHHHHHHHcCCChhhhHHhcc
Q 016584 177 DKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSG 256 (387)
Q Consensus 177 ~~~~~VScADiiaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~L~~~F~~~GLs~~EmVALsG 256 (387)
++++.||||||||||+++||+.+|||.|+|++||+|+..+. ++++||+ |..++++|++.|++|||+++|||||+|
T Consensus 87 ~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~--p~~~~~~l~~~F~~~Gl~~~dlVALsG 161 (251)
T PLN02879 87 ELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQ--ATKGVDHLRDVFGRMGLNDKDIVALSG 161 (251)
T ss_pred HHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCC--CCCCHHHHHHHHHHcCCCHHHHeeeec
Confidence 99999999999999999999999999999999999998774 5688999 889999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccChHHHHHhhhccCCCcccccccccccCCcchHHHHHHHh
Q 016584 257 AHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEKYA 336 (387)
Q Consensus 257 aHTIG~~hc~~~g~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yyk~ll~~~g~~~llL~SD~~L~~D~~t~~~V~~yA 336 (387)
|||||++||.++++. ..|+.+|.+|||+||++|+.+...++++|+||++|+.|++|+.+|++||
T Consensus 162 aHTiG~ah~~r~g~~----------------g~~d~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A 225 (251)
T PLN02879 162 GHTLGRCHKERSGFE----------------GAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYA 225 (251)
T ss_pred cccccccccccccCC----------------CCCCCCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHh
Confidence 999999999875441 1377899999999999999984445667899999999999999999999
Q ss_pred hCHHHHHHHHHHHHHHHHcCCCC
Q 016584 337 EDQEAFFKDYAEAHAKLSNLGAK 359 (387)
Q Consensus 337 ~d~~~F~~dFa~Am~KM~~lgv~ 359 (387)
.||+.|+++|+.||+||++||+.
T Consensus 226 ~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 226 ADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred hCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999984
No 3
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=5e-67 Score=502.65 Aligned_cols=242 Identities=61% Similarity=1.028 Sum_probs=223.9
Q ss_pred CCChhHHHHHHHHHHHHHHcCCchhhHHHHHhhhccCCCCCCCCCCCCCCCCccccchhhhhhhcccCcHHHHHHHHHHh
Q 016584 97 ASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIK 176 (387)
Q Consensus 97 ~~~~~~~~~v~~~i~~~l~~~~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E~~~~~N~gL~~~~~~i~~iK 176 (387)
+....++++|+++|+++++++.++|.||||+|||||+||... +.|||||+|++++|+++++|.+|.+++++|++||
T Consensus 7 ~~~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~----~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK 82 (253)
T cd00691 7 AYAAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKET----KTGGSNGTIRFDPELNHGANAGLDIARKLLEPIK 82 (253)
T ss_pred cccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccc----CCCCCCccccchhhcCCccccchHHHHHHHHHHH
Confidence 344688999999999999976799999999999999999886 5789999999999999999999989999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCCCCCChHHHHHHHHHcCCChhhhHHhcc
Q 016584 177 DKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSG 256 (387)
Q Consensus 177 ~~~~~VScADiiaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~L~~~F~~~GLs~~EmVALsG 256 (387)
++++.||||||||||+|+||+.+|||.|+|++||+|+.++....++++||. |..++++|++.|+++||+++|||+|+|
T Consensus 83 ~~~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~--p~~~~~~l~~~F~~~Gls~~d~VaLsG 160 (253)
T cd00691 83 KKYPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPD--ASKGADHLRDVFYRMGFNDQEIVALSG 160 (253)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCC--CCCCHHHHHHHHHhcCCCHHHHHHhcc
Confidence 999999999999999999999999999999999999999887667789999 788999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccChHHHHHhhhccC----CCcccccccccccCCcchHHHH
Q 016584 257 AHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERRD----EDLLVLPTDAVLFEDPSFKVYA 332 (387)
Q Consensus 257 aHTIG~~hc~~~g~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yyk~ll~~~g----~~~llL~SD~~L~~D~~t~~~V 332 (387)
|||||++||.+.++.. +|+.||.+|||+||+||+.+++ +++++|+||++|+.|++|+.+|
T Consensus 161 aHTiG~a~c~~~~~~g----------------~~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v 224 (253)
T cd00691 161 AHTLGRCHKERSGYDG----------------PWTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYV 224 (253)
T ss_pred cceeecccccCCCCCC----------------CCCCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHH
Confidence 9999999997633211 2456899999999999999998 7888999999999999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHcCCCCC
Q 016584 333 EKYAEDQEAFFKDYAEAHAKLSNLGAKF 360 (387)
Q Consensus 333 ~~yA~d~~~F~~dFa~Am~KM~~lgv~t 360 (387)
+.||.|+++|+++|++||+||+++||++
T Consensus 225 ~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 225 ELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999976
No 4
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=6.3e-67 Score=500.78 Aligned_cols=239 Identities=47% Similarity=0.847 Sum_probs=217.3
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCchhhHHHHHhhhccCCCCCCCCCCCCCCCCccccchhhhhhhcccCcHHHHHHHHHH
Q 016584 96 AASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPI 175 (387)
Q Consensus 96 ~~~~~~~~~~v~~~i~~~l~~~~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E~~~~~N~gL~~~~~~i~~i 175 (387)
....+.+++.++++|++++.++.++|.||||+||||+|||... +.|||||||++++|+++++|.||.++|++|++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~----~~GG~dgSi~~~~E~~~~~N~gl~~~~~~i~~i 84 (250)
T PLN02364 9 SEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQS----RTGGPFGTMRFDAEQAHGANSGIHIALRLLDPI 84 (250)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCC----CCCCCCccccccccccCCCccCHHHHHHHHHHH
Confidence 3444689999999999999888999999999999999999875 468999999999999999999998999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCCCCCChHHHHHHHHH-cCCChhhhHHh
Q 016584 176 KDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYR-MGLNDKEIVAL 254 (387)
Q Consensus 176 K~~~~~VScADiiaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~L~~~F~~-~GLs~~EmVAL 254 (387)
|++++.|||||||+||||+||+++|||.|+|++||+|++++. ++++||+ |..++++|++.|++ +|||++|||+|
T Consensus 85 k~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~lP~--p~~~~~~l~~~F~~~~Gl~~~d~VaL 159 (250)
T PLN02364 85 REQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPP---PEGRLPD--ATKGCDHLRDVFAKQMGLSDKDIVAL 159 (250)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccc---ccCCCCC--CCcCHHHHHHHHHHhcCCCHHHheee
Confidence 999999999999999999999999999999999999999875 4678999 78899999999996 69999999999
Q ss_pred ccccccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccChHHHHHhhhccCCCcccccccccccCCcchHHHHHH
Q 016584 255 SGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKVYAEK 334 (387)
Q Consensus 255 sGaHTIG~~hc~~~g~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yyk~ll~~~g~~~llL~SD~~L~~D~~t~~~V~~ 334 (387)
+||||||++||.++++. .+|+.||.+|||+||++|+.+..++++.|+||++|+.|++|+.+|+.
T Consensus 160 sGaHTiG~~hc~r~~~~----------------g~~~~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~ 223 (250)
T PLN02364 160 SGAHTLGRCHKDRSGFE----------------GAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEK 223 (250)
T ss_pred ecceeeccccCCCCCCC----------------CCCCCCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHH
Confidence 99999999999875431 13567899999999999998833346667899999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHcCCCC
Q 016584 335 YAEDQEAFFKDYAEAHAKLSNLGAK 359 (387)
Q Consensus 335 yA~d~~~F~~dFa~Am~KM~~lgv~ 359 (387)
||.|++.|+++|++||+||++||+.
T Consensus 224 ~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 224 YAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999974
No 5
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.1e-67 Score=513.73 Aligned_cols=255 Identities=32% Similarity=0.479 Sum_probs=227.2
Q ss_pred CChhHHHHHHHHHHHHHHcC-CchhhHHHHHhhhccCCCCCCCCCCCCCCCCccccch------hhhhhhcccCcHHHHH
Q 016584 98 SDPDQLKSAREDIRELLKST-FCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFE------VELKHAANAGLVNALK 170 (387)
Q Consensus 98 ~~~~~~~~v~~~i~~~l~~~-~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~------~E~~~~~N~gL~~~~~ 170 (387)
+.|+.+++|+++|++.+..+ .++|+||||+|||||+ +||||||+++ .|+++++|.++ ++|+
T Consensus 10 sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v-----------~GcDaSill~~~~~~~~E~~~~~N~~l-~g~~ 77 (298)
T cd00693 10 SCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFV-----------RGCDASVLLDSTANNTSEKDAPPNLSL-RGFD 77 (298)
T ss_pred CCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhc-----------cCcceeEEecCCCCCchhccCCCCCCc-chhH
Confidence 56889999999999998765 5899999999999995 7999999985 59999999987 7999
Q ss_pred HHHHHhhhC----C-CCCHHHHHHHHHHHHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCCCCCChHHHHHHHHHcC
Q 016584 171 LIQPIKDKY----S-GVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMG 245 (387)
Q Consensus 171 ~i~~iK~~~----~-~VScADiiaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~L~~~F~~~G 245 (387)
+|+.||+++ | .||||||||||+|+||+.+|||.|+|++||+|+..+...++ ++||+ |..+++++++.|+++|
T Consensus 78 ~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~--p~~~~~~l~~~F~~~G 154 (298)
T cd00693 78 VIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPS--PFFSVSQLISLFASKG 154 (298)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCC--cccCHHHHHHHHHHcC
Confidence 999999876 3 69999999999999999999999999999999987765544 78999 8899999999999999
Q ss_pred CChhhhHHhccccccccccCC----C----CCCCCCCCcc--------cCCCCCCCC---CCCcc-ccccccChHHHHHh
Q 016584 246 LNDKEIVALSGAHTVGRSRPE----R----SGWGKPETKY--------TKDGPGAPG---GQSWT-VQWLKFDNSYFKDI 305 (387)
Q Consensus 246 Ls~~EmVALsGaHTIG~~hc~----~----~g~g~pd~~~--------~~~cP~~~~---~~~~~-~tp~~FDN~Yyk~l 305 (387)
|+++|||+|+||||||++||. | ++.+.+||.+ ++.||...+ ...++ .||.+|||+||+||
T Consensus 155 ~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l 234 (298)
T cd00693 155 LTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNL 234 (298)
T ss_pred CCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHH
Confidence 999999999999999999994 2 2233455542 578996421 23445 68999999999999
Q ss_pred hhccCCCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCCeeeCCC
Q 016584 306 KERRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVLDDG 371 (387)
Q Consensus 306 l~~~g~~~llL~SD~~L~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~lgv~t~~~~gv~l~~~ 371 (387)
+.++| +|+||++|+.|++|+.+|++||.||+.|+++|++||+||+++||+|+.+||||+.|.
T Consensus 235 ~~~~g----lL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~ 296 (298)
T cd00693 235 LAGRG----LLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCR 296 (298)
T ss_pred Hhccc----CccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccc
Confidence 99999 999999999999999999999999999999999999999999999999999999885
No 6
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=2.5e-67 Score=517.77 Aligned_cols=255 Identities=24% Similarity=0.346 Sum_probs=224.7
Q ss_pred CChhHHHHHHHHHHHHHHcC-CchhhHHHHHhhhccCCCCCCCCCCCCCCCCccccch---hhhhhhcccCcHHHHHHHH
Q 016584 98 SDPDQLKSAREDIRELLKST-FCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFE---VELKHAANAGLVNALKLIQ 173 (387)
Q Consensus 98 ~~~~~~~~v~~~i~~~l~~~-~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~---~E~~~~~N~gL~~~~~~i~ 173 (387)
+.|..+.+|++.|++.++.+ .++|++|||+|||||+ +||||||+++ .|+++++|.+| ++|++|+
T Consensus 33 sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv-----------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf~~i~ 100 (324)
T PLN03030 33 TCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFV-----------RGCDASILIDGSNTEKTALPNLLL-RGYDVID 100 (324)
T ss_pred cCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhhee-----------cCCceEEeeCCCcccccCCCCcCc-chHHHHH
Confidence 45889999999999999765 5899999999999995 8999999996 69999999987 7999999
Q ss_pred HHhhhCC-----CCCHHHHHHHHHHHHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCCCCCChHHHHHHHHHcCCCh
Q 016584 174 PIKDKYS-----GVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLND 248 (387)
Q Consensus 174 ~iK~~~~-----~VScADiiaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~L~~~F~~~GLs~ 248 (387)
.||++++ +||||||||||+|+||+++|||.|+|++||||++++...++ .+||. |+.++++|++.|+++||+.
T Consensus 101 ~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~-~~LP~--p~~~~~~l~~~F~~~Gl~~ 177 (324)
T PLN03030 101 DAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDA-SNLPG--FTDSIDVQKQKFAAKGLNT 177 (324)
T ss_pred HHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccc-cCCcC--CCCCHHHHHHHHHHcCCCH
Confidence 9998874 69999999999999999999999999999999998876555 48999 8899999999999999999
Q ss_pred hhhHHhccccccccccCCCCC--------CC-CCCCc----c----cCCCCCCCCC---CC-ccccccccChHHHHHhhh
Q 016584 249 KEIVALSGAHTVGRSRPERSG--------WG-KPETK----Y----TKDGPGAPGG---QS-WTVQWLKFDNSYFKDIKE 307 (387)
Q Consensus 249 ~EmVALsGaHTIG~~hc~~~g--------~g-~pd~~----~----~~~cP~~~~~---~~-~~~tp~~FDN~Yyk~ll~ 307 (387)
+|||+|+||||||++||.... .+ .+||. | ++.||...+. .. +..||.+|||+||+||++
T Consensus 178 ~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~ 257 (324)
T PLN03030 178 QDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKN 257 (324)
T ss_pred HHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHh
Confidence 999999999999999996321 11 24543 3 5789952211 12 236899999999999999
Q ss_pred ccCCCcccccccccccCCcchHHHHHHHhhCH----HHHHHHHHHHHHHHHcCCCCCCCCCCeeeCCC
Q 016584 308 RRDEDLLVLPTDAVLFEDPSFKVYAEKYAEDQ----EAFFKDYAEAHAKLSNLGAKFDPPEGIVLDDG 371 (387)
Q Consensus 308 ~~g~~~llL~SD~~L~~D~~t~~~V~~yA~d~----~~F~~dFa~Am~KM~~lgv~t~~~~gv~l~~~ 371 (387)
++| +|+||++|+.|++|+.+|++||.|+ +.|+++|++||+||++|||+|+.+||||+.|.
T Consensus 258 ~rG----lL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~ 321 (324)
T PLN03030 258 GRG----ILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCS 321 (324)
T ss_pred cCC----CcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceecccc
Confidence 999 9999999999999999999999875 59999999999999999999999999999885
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.6e-61 Score=477.90 Aligned_cols=268 Identities=25% Similarity=0.357 Sum_probs=219.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHc-CCc---hhhHHHHHhhhccCCCCCC-CCCCCCCCCCccccch--hhhhhhcccCcHH
Q 016584 95 CAASDPDQLKSAREDIRELLKS-TFC---HPILVRLGWHDAGTYDKNI-EEWPRRGGANASLRFE--VELKHAANAGLVN 167 (387)
Q Consensus 95 ~~~~~~~~~~~v~~~i~~~l~~-~~~---a~~lLRLaFHDc~t~d~~~-~~~~~~GGcDgSI~~~--~E~~~~~N~gL~~ 167 (387)
|++. ||.|..|+++|++.|.+ +.| ++.||||+||||++|++.. .-+.+.|||||||++. .|+++++|.||..
T Consensus 10 ~~~~-cc~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~ 88 (328)
T cd00692 10 CNAA-CCVWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDE 88 (328)
T ss_pred cchh-hcchHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHH
Confidence 4444 99999999999999874 455 5679999999999999521 0012679999999875 5999999999988
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHh-CCCccCCcCCCCCCCCCCCCCccCCCCCCCCCCChHHHHHHHHHcCC
Q 016584 168 ALKLIQPIKDKYSGVTYADLFQLASATAIEEA-GGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGL 246 (387)
Q Consensus 168 ~~~~i~~iK~~~~~VScADiiaLAa~~AV~~~-GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~L~~~F~~~GL 246 (387)
.++.|+++++++. ||||||||||||+||+.| |||+|+|++||+|++.+. ++++||+ |..++++|++.|++|||
T Consensus 89 vvd~lk~~~e~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~--p~~sv~~l~~~F~~~Gf 162 (328)
T cd00692 89 IVEALRPFHQKHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPE--PFDSVDKILARFADAGF 162 (328)
T ss_pred HHHHHHHHHHhcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCC--CCCCHHHHHHHHHHcCC
Confidence 8888888888875 999999999999999965 999999999999999875 5678999 88999999999999999
Q ss_pred ChhhhHHhccccccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccChHHHHHhhh-ccC---------------
Q 016584 247 NDKEIVALSGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKE-RRD--------------- 310 (387)
Q Consensus 247 s~~EmVALsGaHTIG~~hc~~~g~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yyk~ll~-~~g--------------- 310 (387)
+++|||+|+||||||++|.. ||.+ + +.+|+.||.+|||+||+|++. +++
T Consensus 163 ~~~E~VaLsGAHTiG~a~~~-------Dps~----~----g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~ 227 (328)
T cd00692 163 SPDELVALLAAHSVAAQDFV-------DPSI----A----GTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPL 227 (328)
T ss_pred CHHHHhhhcccccccccCCC-------CCCC----C----CCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCc
Confidence 99999999999999999842 2222 1 135788999999999999884 332
Q ss_pred CCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCCeeeCCC-CCccccc-ccccCCCC
Q 016584 311 EDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVLDDG-AAPEKFV-AAKYSSGK 386 (387)
Q Consensus 311 ~~~llL~SD~~L~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~lgv~t~~~~gv~l~~~-~~~~~~~-~~~~~~~~ 386 (387)
.++++|+||++|+.|++|+.+|++||+||++|+++|++||+||++|||.-+ .=|..+++ ..|..++ ...|+.||
T Consensus 228 ~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~~~--~l~dcs~v~p~~~~~~~~~~~p~~~ 303 (328)
T cd00692 228 PGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQDNI--SLTDCSDVIPPPKPLSQDPTFPAGL 303 (328)
T ss_pred cccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCcc--hhccCcccCCCCCCCCCCCcCCCCC
Confidence 246789999999999999999999999999999999999999999998632 11222222 2234444 45577765
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=5.3e-62 Score=489.19 Aligned_cols=283 Identities=31% Similarity=0.497 Sum_probs=244.6
Q ss_pred CCcccccccccccccCcCccccCCCCCCCccCCCCChhHHHHHHHHHHHHHHcC---------CchhhHHHHHhhhccCC
Q 016584 64 PSSLKCLRFSPLISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKST---------FCHPILVRLGWHDAGTY 134 (387)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~v~~~i~~~l~~~---------~~a~~lLRLaFHDc~t~ 134 (387)
.++|++|++|...++|.|. +|++. .+....+++.|+++|+++|++. .++|.+|||+|||++||
T Consensus 13 ~~~~~~l~~~~~~~~p~~~---~~~~~-----~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy 84 (409)
T cd00649 13 RLNLKILHQHSPKSNPMGE---DFNYA-----EEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTY 84 (409)
T ss_pred ccCchhhccCCCCCCCCCC---CCCHH-----HHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccc
Confidence 5799999999999999885 78883 6667788999999999999864 58999999999999999
Q ss_pred CCCCCCCCCCCCCC-ccccchhhhhhhcccCcHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHHHhCCCccCCcCCCCC
Q 016584 135 DKNIEEWPRRGGAN-ASLRFEVELKHAANAGLVNALKLIQPIKDKYS-GVTYADLFQLASATAIEEAGGPKIPMKYGRVD 212 (387)
Q Consensus 135 d~~~~~~~~~GGcD-gSI~~~~E~~~~~N~gL~~~~~~i~~iK~~~~-~VScADiiaLAa~~AV~~~GGP~i~v~~GR~D 212 (387)
|..+ ++||++ |+|||++|.+++.|.||.+++++|++||.+|+ .||+||||+||+++|||.||||.|+|++||.|
T Consensus 85 ~~~d----~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~D 160 (409)
T cd00649 85 RIAD----GRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGRED 160 (409)
T ss_pred cCcC----CCCCCCCCccccccccCcHhhhhHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCc
Confidence 9986 689997 79999999999999999999999999999997 69999999999999999999999999999999
Q ss_pred CCCCCC-----------------------------------CCccC--CCCCCCCCCChHHHHHHHHHcCCChhhhHHhc
Q 016584 213 VSGPEQ-----------------------------------CPEEG--RLPAAGPPSPAEHLRNVFYRMGLNDKEIVALS 255 (387)
Q Consensus 213 ~~~s~~-----------------------------------~~~~g--~LP~~~p~~~~~~L~~~F~~~GLs~~EmVALs 255 (387)
++.+.. +.++| .||+ |..++.+|++.|++||||++|||||+
T Consensus 161 a~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPd--P~~sa~~LR~~F~RmGlnd~E~VAL~ 238 (409)
T cd00649 161 VWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPD--PLAAAKDIRETFARMAMNDEETVALI 238 (409)
T ss_pred cCCCccccccCcchhcccccccccchhhccchhhhhccccccCCCCCCCCCC--CccCHHHHHHHHHHcCCCHHHHeeec
Confidence 976532 12344 6888 78899999999999999999999995
Q ss_pred -cccccccccCCCCCC-CCCCCc----------ccCCCCCCCC--------CCCccccccccChHHHHHhhhcc------
Q 016584 256 -GAHTVGRSRPERSGW-GKPETK----------YTKDGPGAPG--------GQSWTVQWLKFDNSYFKDIKERR------ 309 (387)
Q Consensus 256 -GaHTIG~~hc~~~g~-g~pd~~----------~~~~cP~~~~--------~~~~~~tp~~FDN~Yyk~ll~~~------ 309 (387)
||||||++||..+.. -.|+|. ++..||...+ +.+|+.+|++|||+||++|+..+
T Consensus 239 sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~ 318 (409)
T cd00649 239 AGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKS 318 (409)
T ss_pred cCCcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccC
Confidence 999999999964211 113432 2467885311 23678899999999999999822
Q ss_pred --------------------------CCCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHH--HcCCCCC
Q 016584 310 --------------------------DEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKL--SNLGAKF 360 (387)
Q Consensus 310 --------------------------g~~~llL~SD~~L~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM--~~lgv~t 360 (387)
..+++||+||++|+.|++++++|++||+|++.|+++|++||+|| .++|+++
T Consensus 319 p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~ 397 (409)
T cd00649 319 PAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKS 397 (409)
T ss_pred CCCcccccccCccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchh
Confidence 12567999999999999999999999999999999999999999 5788865
No 9
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.8e-57 Score=481.77 Aligned_cols=297 Identities=29% Similarity=0.474 Sum_probs=247.7
Q ss_pred CCcccccccccccccCcCccccCCCCCCCccCCCCChhHHHHHHHHHHHHHHcC---------CchhhHHHHHhhhccCC
Q 016584 64 PSSLKCLRFSPLISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKST---------FCHPILVRLGWHDAGTY 134 (387)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~v~~~i~~~l~~~---------~~a~~lLRLaFHDc~t~ 134 (387)
.++|++||+|...++|.|. +|+|. .+...-+++.||++|++++++. .++|.||||+||+++||
T Consensus 23 ~l~~~~l~~~~~~~~p~~~---~f~y~-----~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTY 94 (716)
T TIGR00198 23 ALNLDILHQHDRKTNPMGE---DFDYA-----EEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTY 94 (716)
T ss_pred ccCchhhccCCCCCCCCCC---CccHH-----HHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccc
Confidence 6799999999999999995 89994 6666788999999999999874 48999999999999999
Q ss_pred CCCCCCCCCCCCCC-ccccchhhhhhhcccCcHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHHHhCCCccCCcCCCCC
Q 016584 135 DKNIEEWPRRGGAN-ASLRFEVELKHAANAGLVNALKLIQPIKDKYS-GVTYADLFQLASATAIEEAGGPKIPMKYGRVD 212 (387)
Q Consensus 135 d~~~~~~~~~GGcD-gSI~~~~E~~~~~N~gL~~~~~~i~~iK~~~~-~VScADiiaLAa~~AV~~~GGP~i~v~~GR~D 212 (387)
+..+ ++|||+ |+|||++|.+||+|.+|.+++++|++||.+|+ .|||||||+|||++|||.+|||.|+|.+||+|
T Consensus 95 r~~d----~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D 170 (716)
T TIGR00198 95 RIAD----GRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGRED 170 (716)
T ss_pred cCCC----CCCCCCCCceecccccCchhhhhHHHHHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCC
Confidence 9886 789995 79999999999999999999999999999998 69999999999999999999999999999999
Q ss_pred CCCCCCC----------------------------------CccC--CCCCCCCCCChHHHHHHHHHcCCChhhhHHhc-
Q 016584 213 VSGPEQC----------------------------------PEEG--RLPAAGPPSPAEHLRNVFYRMGLNDKEIVALS- 255 (387)
Q Consensus 213 ~~~s~~~----------------------------------~~~g--~LP~~~p~~~~~~L~~~F~~~GLs~~EmVALs- 255 (387)
+..+..+ .+++ .+|+ |..++.+|++.|++||||++|||||+
T Consensus 171 ~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPd--P~~sa~~Lrd~F~rmGLnd~EmVALia 248 (716)
T TIGR00198 171 IWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNPEGPDGHPD--PLCTAQDIRTTFARMGMNDEETVALIA 248 (716)
T ss_pred CCCcccccccccccchhhccccccccccccchhhhccccccCcccccCCCC--CCCCHHHHHHHHHHcCCChHHHeeeec
Confidence 9644210 0122 5787 77899999999999999999999996
Q ss_pred cccccccccCCCCC-CCCCCCc--------ccCCCCCCCC----------CCCccccccccChHHHHHhhhcc-------
Q 016584 256 GAHTVGRSRPERSG-WGKPETK--------YTKDGPGAPG----------GQSWTVQWLKFDNSYFKDIKERR------- 309 (387)
Q Consensus 256 GaHTIG~~hc~~~g-~g~pd~~--------~~~~cP~~~~----------~~~~~~tp~~FDN~Yyk~ll~~~------- 309 (387)
||||||++||.... .-.|||. +...||...+ +..|+.+|.+|||+||+||+...
T Consensus 249 GaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~ 328 (716)
T TIGR00198 249 GGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSP 328 (716)
T ss_pred CceeccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecC
Confidence 99999999996311 1125543 2345653211 24678999999999999999751
Q ss_pred -----------------------CCCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHc--CCCCC----
Q 016584 310 -----------------------DEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSN--LGAKF---- 360 (387)
Q Consensus 310 -----------------------g~~~llL~SD~~L~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~--lgv~t---- 360 (387)
...+++|+||++|..|++++++|+.||.|++.|+++|++||.||++ +|.+.
T Consensus 329 ~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y~g 408 (716)
T TIGR00198 329 AGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRYIG 408 (716)
T ss_pred CCCceeeecccccccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhhcC
Confidence 0136799999999999999999999999999999999999999995 56432
Q ss_pred -CCCC-CeeeCCCCCc
Q 016584 361 -DPPE-GIVLDDGAAP 374 (387)
Q Consensus 361 -~~~~-gv~l~~~~~~ 374 (387)
.+|+ .++-++||-+
T Consensus 409 ~~vp~~~~~wqdp~p~ 424 (716)
T TIGR00198 409 PDVPQEDLIWQDPLPP 424 (716)
T ss_pred CCCCcccccccCCCCC
Confidence 2444 4477776544
No 10
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=8e-57 Score=431.15 Aligned_cols=232 Identities=41% Similarity=0.692 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHc-CCchhhHHHHHhhhccCCCCCCCCCCCCCCCCccccchhhhhhhcccCcHHHHHHHHHHhhhCC---
Q 016584 105 SAREDIRELLKS-TFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYS--- 180 (387)
Q Consensus 105 ~v~~~i~~~l~~-~~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E~~~~~N~gL~~~~~~i~~iK~~~~--- 180 (387)
.|++.|++.+.. ..+++.+|||+||||++|+..+. +.|||||||++++|+++|+|.||.+++++|++||.+++
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~---~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~ 78 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADG---KGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGN 78 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCC---CCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCC
Confidence 478888888765 46899999999999999998763 57999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHh--CCCccCCcCCCCCCCCCC--CCCccCCCCCCCCCCChHHHHHHHHHcCCChhhhHHhc-
Q 016584 181 GVTYADLFQLASATAIEEA--GGPKIPMKYGRVDVSGPE--QCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALS- 255 (387)
Q Consensus 181 ~VScADiiaLAa~~AV~~~--GGP~i~v~~GR~D~~~s~--~~~~~g~LP~~~p~~~~~~L~~~F~~~GLs~~EmVALs- 255 (387)
.|||||||+||+++||+.+ |||.|+|++||+|++.+. ...+.+++|. +..+++++++.|.++||+++|||||+
T Consensus 79 ~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~--~~~~~~~~~~~F~~~Gl~~~e~VAL~~ 156 (255)
T cd00314 79 PVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPN--ETSSATELRDKFKRMGLSPSELVALSA 156 (255)
T ss_pred cccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCC--ccchHHHHHHHHHHcCCCHHHHHhhcc
Confidence 6999999999999999999 999999999999998653 3345677887 77889999999999999999999999
Q ss_pred ccccc-ccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccChHHHHHhhhccC------------CCcccccccccc
Q 016584 256 GAHTV-GRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERRD------------EDLLVLPTDAVL 322 (387)
Q Consensus 256 GaHTI-G~~hc~~~g~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yyk~ll~~~g------------~~~llL~SD~~L 322 (387)
||||| |++||...+.. .| ..|+.+|.+|||+||++|+.++. ..+.+|+||++|
T Consensus 157 GaHti~G~~~~~~~~~~--------~~------~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L 222 (255)
T cd00314 157 GAHTLGGKNHGDLLNYE--------GS------GLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYAL 222 (255)
T ss_pred CCeeccCcccCCCCCcc--------cC------CCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHH
Confidence 99999 99999753221 02 24678999999999999999772 233599999999
Q ss_pred cCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHc
Q 016584 323 FEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSN 355 (387)
Q Consensus 323 ~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~ 355 (387)
+.|++|+.+|+.||.|++.|+++|++||+||++
T Consensus 223 ~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 223 LSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred hcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999985
No 11
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=6.3e-57 Score=475.38 Aligned_cols=296 Identities=30% Similarity=0.492 Sum_probs=248.7
Q ss_pred CCcccccccccccccCcCccccCCCCCCCccCCCCChhHHHHHHHHHHHHHHcC---------CchhhHHHHHhhhccCC
Q 016584 64 PSSLKCLRFSPLISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKST---------FCHPILVRLGWHDAGTY 134 (387)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~v~~~i~~~l~~~---------~~a~~lLRLaFHDc~t~ 134 (387)
.++|++||+|+..++|.|. +|+|. .+...-+++.||++|++++++. .++|.+|||+||+++||
T Consensus 25 ~l~l~~l~~~~~~~~p~~~---~f~y~-----~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTY 96 (726)
T PRK15061 25 QLNLDILHQHSSKSNPMGE---DFDYA-----EEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTY 96 (726)
T ss_pred ccCchhhccCCCCCCCCCC---CCCHH-----HHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccc
Confidence 6899999999999999995 89994 6777889999999999999864 48999999999999999
Q ss_pred CCCCCCCCCCCCCC-ccccchhhhhhhcccCcHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHHHhCCCccCCcCCCCC
Q 016584 135 DKNIEEWPRRGGAN-ASLRFEVELKHAANAGLVNALKLIQPIKDKYS-GVTYADLFQLASATAIEEAGGPKIPMKYGRVD 212 (387)
Q Consensus 135 d~~~~~~~~~GGcD-gSI~~~~E~~~~~N~gL~~~~~~i~~iK~~~~-~VScADiiaLAa~~AV~~~GGP~i~v~~GR~D 212 (387)
+..+ ++|||+ |+|||++|.+|+.|.||.+++++|++||.+|+ .||+||||+||+++|||.||||.|+|.+||.|
T Consensus 97 r~~d----~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D 172 (726)
T PRK15061 97 RIGD----GRGGAGGGQQRFAPLNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGRED 172 (726)
T ss_pred cCcC----CCCCCCCCcccCcccccchhhhhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCC
Confidence 9986 689997 79999999999999999999999999999997 69999999999999999999999999999999
Q ss_pred CCCCCCCC------------------------------------ccC--CCCCCCCCCChHHHHHHHHHcCCChhhhHHh
Q 016584 213 VSGPEQCP------------------------------------EEG--RLPAAGPPSPAEHLRNVFYRMGLNDKEIVAL 254 (387)
Q Consensus 213 ~~~s~~~~------------------------------------~~g--~LP~~~p~~~~~~L~~~F~~~GLs~~EmVAL 254 (387)
...+..+- ++| .+|+ |..++.+|++.|.+||||++|||||
T Consensus 173 ~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPd--P~~sa~~lR~tF~RMGmnDeEtVAL 250 (726)
T PRK15061 173 VWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPD--PLAAARDIRETFARMAMNDEETVAL 250 (726)
T ss_pred CcCCccccccCccccccccccccccccccccchhhhhccceecCCCCCCCCCC--cccCHHHHHHHHHHcCCCHHHheee
Confidence 97654310 111 1566 7788999999999999999999999
Q ss_pred c-cccccccccCCCCC-CCCCCCc----------ccCCCCCCCC--------CCCccccccccChHHHHHhhhcc-----
Q 016584 255 S-GAHTVGRSRPERSG-WGKPETK----------YTKDGPGAPG--------GQSWTVQWLKFDNSYFKDIKERR----- 309 (387)
Q Consensus 255 s-GaHTIG~~hc~~~g-~g~pd~~----------~~~~cP~~~~--------~~~~~~tp~~FDN~Yyk~ll~~~----- 309 (387)
+ ||||||++||.... .-.|||. ++..||...+ +.+|+.+|++|||+||++|+.+.
T Consensus 251 iaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~ 330 (726)
T PRK15061 251 IAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTK 330 (726)
T ss_pred ccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceecc
Confidence 6 99999999996421 1124543 2467885211 34688999999999999999851
Q ss_pred ---------------------------CCCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHc--CCCCC
Q 016584 310 ---------------------------DEDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSN--LGAKF 360 (387)
Q Consensus 310 ---------------------------g~~~llL~SD~~L~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~--lgv~t 360 (387)
...++||+||++|..|+.++++|++||+|++.|+++|++||.||.. +|.+.
T Consensus 331 sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ 410 (726)
T PRK15061 331 SPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKS 410 (726)
T ss_pred CCCccccccccCccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchh
Confidence 0147899999999999999999999999999999999999999955 66532
Q ss_pred -----CCCC-CeeeCCCCC
Q 016584 361 -----DPPE-GIVLDDGAA 373 (387)
Q Consensus 361 -----~~~~-gv~l~~~~~ 373 (387)
.+|+ ..+-++||-
T Consensus 411 ry~g~~vp~e~~~wqdp~p 429 (726)
T PRK15061 411 RYLGPEVPKEDLIWQDPVP 429 (726)
T ss_pred hhcCCCCCcccccccCCCC
Confidence 2344 445666643
No 12
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=6.1e-56 Score=425.06 Aligned_cols=241 Identities=23% Similarity=0.370 Sum_probs=204.4
Q ss_pred ccCcCccccCCCCCCCccCCCCChhHHHHHHHHHHHHHHcCCchhhHHHHHhhhccCCCCCCCCCCCCCCCCccccchhh
Q 016584 77 SQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVE 156 (387)
Q Consensus 77 ~~~~~~~~~~f~~~~~p~~~~~~~~~~~~v~~~i~~~l~~~~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~~~E 156 (387)
-++.|+.+++|++.|+||+......+ ...+++||||+||||+|||+.+ ++|||||||++ |
T Consensus 13 ~~~~g~~~~~f~~~v~~c~~~~~~~~--------------~~~aa~~LRL~FHDc~t~~~~~----g~gGcDgSIll--e 72 (264)
T cd08201 13 YLQSGYSARGFVAGVTPCTDCAPGPG--------------RQAAAEWLRTAFHDMATHNVDD----GTGGLDASIQY--E 72 (264)
T ss_pred HhcccceecccccccccccccCcCCC--------------ccHHHHHHHHHHHhhcCcccCC----CCCCCCcceee--c
Confidence 47889999999999999998765433 2579999999999999999986 68999999999 5
Q ss_pred hhhhcccCcH--HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCCCCCCh
Q 016584 157 LKHAANAGLV--NALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPA 234 (387)
Q Consensus 157 ~~~~~N~gL~--~~~~~i~~iK~~~~~VScADiiaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~ 234 (387)
..++||.|+. ..++.++.|+. ..||||||||||+++||+.||||.|+|++||+|++.+. +++ ||+ |..++
T Consensus 73 ~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~---~~g-lP~--P~~~v 144 (264)
T cd08201 73 LDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAG---QAG-VPE--PQTDL 144 (264)
T ss_pred CCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccc---ccc-CCC--CccCH
Confidence 7789999876 44666666644 37999999999999999999999999999999999875 335 998 88999
Q ss_pred HHHHHHHHHcCCChhhhHHhcc-ccccccccCCCCCCCCCCCcccCCCCCCC--CCCCccccccccChHHHHHhhhccCC
Q 016584 235 EHLRNVFYRMGLNDKEIVALSG-AHTVGRSRPERSGWGKPETKYTKDGPGAP--GGQSWTVQWLKFDNSYFKDIKERRDE 311 (387)
Q Consensus 235 ~~L~~~F~~~GLs~~EmVALsG-aHTIG~~hc~~~g~g~pd~~~~~~cP~~~--~~~~~~~tp~~FDN~Yyk~ll~~~g~ 311 (387)
++|++.|++|||+++|||+|+| |||||++||...+...+ |+.. ++.+|+.||.+|||+||+|++++..+
T Consensus 145 ~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~--------~g~~~~~~~p~dstp~~FDn~~f~E~l~g~~~ 216 (264)
T cd08201 145 GTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVP--------PGSVPDTVLQFFDTTIQFDNKVVTEYLSGTTN 216 (264)
T ss_pred HHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcC--------CccccCCCCCCCCCccccchHHHHHHhcCCCC
Confidence 9999999999999999999995 99999999986432111 1111 34579999999999999999999888
Q ss_pred Cccc------ccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHc
Q 016584 312 DLLV------LPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSN 355 (387)
Q Consensus 312 ~~ll------L~SD~~L~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~ 355 (387)
++|+ +.||.++|..+. ...++.+| ++..|.+.|+..++||++
T Consensus 217 ~~L~~~~~~~~~sd~r~f~~d~-n~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 217 NPLVVGPNNTTNSDLRIFSSDG-NVTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CceeecCCCCccchhhheecCc-cHHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 8876 488999998764 56678888 799999999999999985
No 13
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.8e-56 Score=424.26 Aligned_cols=215 Identities=36% Similarity=0.614 Sum_probs=179.5
Q ss_pred HHHHHHHHHHc-CCchhhHHHHHhhhccCCCCCCCCCCCCCCCCccccc-hhhhhhhcccCcHHHHHHHHHHhhhCC---
Q 016584 106 AREDIRELLKS-TFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRF-EVELKHAANAGLVNALKLIQPIKDKYS--- 180 (387)
Q Consensus 106 v~~~i~~~l~~-~~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgSI~~-~~E~~~~~N~gL~~~~~~i~~iK~~~~--- 180 (387)
||++|+++++. +.++|.||||+||||++| |||||||++ ..|+++++|.||.+++++|++||++++
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~----------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~c 70 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY----------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAAC 70 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH----------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccc----------cccccceeccccccccccccCcceeeechhhHHhhhcccc
Confidence 78999999976 569999999999999964 799999976 789999999999889999999999986
Q ss_pred --CCCHHHHHHHHHHHHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCCCCCChHHHHHHHHHcCCChhhhHHhcccc
Q 016584 181 --GVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAH 258 (387)
Q Consensus 181 --~VScADiiaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~p~~~~~~L~~~F~~~GLs~~EmVALsGaH 258 (387)
.|||||||+||+++||+.+|||.|+|++||+|++.+....+ .+||. |..++++|++.|+++|||++|||||+|||
T Consensus 71 p~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~--p~~~~~~l~~~F~~~Gls~~e~VaLsGaH 147 (230)
T PF00141_consen 71 PGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPS--PTDSVDQLLAFFARKGLSAEEMVALSGAH 147 (230)
T ss_dssp TTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSST--TTSHHHHHHHHHHHTT--HHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHhhhccccccccccccccccccccccccccc-ccccc--cccccchhhhhhhccccchhhhcceeccc
Confidence 49999999999999999999999999999999998875444 56998 88999999999999999999999999999
Q ss_pred ccccccCCCCC--CCCCC----Cccc-CCCCCCCC-CCCccccccccChHHHHHhhhccCCCcccccccccccCCcchHH
Q 016584 259 TVGRSRPERSG--WGKPE----TKYT-KDGPGAPG-GQSWTVQWLKFDNSYFKDIKERRDEDLLVLPTDAVLFEDPSFKV 330 (387)
Q Consensus 259 TIG~~hc~~~g--~g~pd----~~~~-~~cP~~~~-~~~~~~tp~~FDN~Yyk~ll~~~g~~~llL~SD~~L~~D~~t~~ 330 (387)
|||++||.... +..+| +.|. ..|+..+. ..+++ +|.+|||+||++|+++++ +|+||++|+.|++|+.
T Consensus 148 TiG~~~c~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~Yy~~ll~~~g----ll~SD~~L~~d~~t~~ 222 (230)
T PF00141_consen 148 TIGRAHCSSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNSYYKNLLNGRG----LLPSDQALLNDPETRP 222 (230)
T ss_dssp GSTEESGGCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSHHHHHHHHTEE----EEHHHHHHHHSTTHHH
T ss_pred ccccceeccccccccccccccccccceeccCCCcccccccc-CCCcchhHHHHHHhcCCC----cCHHHHHHhcCHHHHH
Confidence 99999996321 01233 3342 26732111 12345 899999999999999999 9999999999999999
Q ss_pred HHHHHhhC
Q 016584 331 YAEKYAED 338 (387)
Q Consensus 331 ~V~~yA~d 338 (387)
+|++||+|
T Consensus 223 ~V~~yA~d 230 (230)
T PF00141_consen 223 IVERYAQD 230 (230)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99999976
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.3e-48 Score=378.90 Aligned_cols=231 Identities=26% Similarity=0.398 Sum_probs=193.4
Q ss_pred hHHHHHHHHHHHHHHcCCchhhHHHHHhhhccCCCCCCCCCCCCCCCCcc-ccchhhhhhhcccC--cHHHHHHHHHHhh
Q 016584 101 DQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANAS-LRFEVELKHAANAG--LVNALKLIQPIKD 177 (387)
Q Consensus 101 ~~~~~v~~~i~~~l~~~~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgS-I~~~~E~~~~~N~g--L~~~~~~i~~iK~ 177 (387)
.+++.++++ ++..+.+++.||||+||+++||+..+ ++||+||+ |+|++|++|+.|.+ |.+++.+|++||.
T Consensus 14 ~di~~lk~~---i~~~gl~~~~lvrlAWhsAgTyr~sd----~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~ 86 (297)
T cd08200 14 ADIAALKAK---ILASGLTVSELVSTAWASASTFRNSD----KRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQK 86 (297)
T ss_pred HHHHHHHHH---HHhcCCcHHHHHHHhhhccccccCCC----CCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHH
Confidence 444444433 34566789999999999999999986 79999997 99999999999999 9999999999999
Q ss_pred hCC-------CCCHHHHHHHHHHHHHHHhCC-----CccCCcCCCCCCCCCCCCCcc---CCCCCCC----------CCC
Q 016584 178 KYS-------GVTYADLFQLASATAIEEAGG-----PKIPMKYGRVDVSGPEQCPEE---GRLPAAG----------PPS 232 (387)
Q Consensus 178 ~~~-------~VScADiiaLAa~~AV~~~GG-----P~i~v~~GR~D~~~s~~~~~~---g~LP~~~----------p~~ 232 (387)
+|+ .||+||||+||+.+|||.+|| |.|+|.+||.|++.+. ++++ .++|.+. +..
T Consensus 87 ~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~-td~~sf~~l~P~adg~rny~~~~~~~~ 165 (297)
T cd08200 87 EFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQ-TDVESFEVLEPKADGFRNYLKKGYRVP 165 (297)
T ss_pred HhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCC-CCcccccccCCCCcccccccccCCCCC
Confidence 997 799999999999999999999 9999999999998653 3332 2345321 123
Q ss_pred ChHHHHHHHHHcCCChhhhHHhcccc-ccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccChHHHHHhhhcc--
Q 016584 233 PAEHLRNVFYRMGLNDKEIVALSGAH-TVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERR-- 309 (387)
Q Consensus 233 ~~~~L~~~F~~~GLs~~EmVALsGaH-TIG~~hc~~~g~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yyk~ll~~~-- 309 (387)
+.++|+++|.+||||++|||||+||| ++|++|. ++++ ..||.+|.+|||.||+||++-.
T Consensus 166 ~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~-~s~~-----------------G~wT~~p~~f~N~fF~nLLd~~~~ 227 (297)
T cd08200 166 PEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYG-GSKH-----------------GVFTDRPGVLTNDFFVNLLDMSTE 227 (297)
T ss_pred HHHHHHHHHHhCCCChHHHhheecchhhcccCCC-CCCC-----------------CCCcCCCCccccHHHHHHhcccce
Confidence 56789999999999999999999998 6998885 3332 1489999999999999999621
Q ss_pred -----------------CCCcc--cccccccccCCcchHHHHHHHhhC--HHHHHHHHHHHHHHHHcCC
Q 016584 310 -----------------DEDLL--VLPTDAVLFEDPSFKVYAEKYAED--QEAFFKDYAEAHAKLSNLG 357 (387)
Q Consensus 310 -----------------g~~~l--lL~SD~~L~~D~~t~~~V~~yA~d--~~~F~~dFa~Am~KM~~lg 357 (387)
++.+. .+++|.+|..|+++|++|+.||.| ++.|++||++||.||.++.
T Consensus 228 W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 228 WKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred eeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 12222 378899999999999999999999 9999999999999999984
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.5e-43 Score=375.88 Aligned_cols=238 Identities=28% Similarity=0.417 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHH----HcCCchhhHHHHHhhhccCCCCCCCCCCCCCCCCcc-ccchhhhhhhcc--cCcHHHHHHHHH
Q 016584 102 QLKSAREDIRELL----KSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANAS-LRFEVELKHAAN--AGLVNALKLIQP 174 (387)
Q Consensus 102 ~~~~v~~~i~~~l----~~~~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgS-I~~~~E~~~~~N--~gL~~~~~~i~~ 174 (387)
+++.|+++|+++. .++.+.+.||||+||+++|||.++ ++||+||. |||++|++|+.| .||.+++.+|++
T Consensus 426 ~~~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd----~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~ 501 (716)
T TIGR00198 426 DYTLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSD----YRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEK 501 (716)
T ss_pred CchhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCC----CCCCCCcceeecchhcCcccCCHHHHHHHHHHHHH
Confidence 4566788888764 445689999999999999999986 68999996 999999999999 899999999999
Q ss_pred HhhhCC--CCCHHHHHHHHHHHHHHHh---CCC--ccCCcCCCCCCCCCCCCCccCCCCCC-------------CCCCCh
Q 016584 175 IKDKYS--GVTYADLFQLASATAIEEA---GGP--KIPMKYGRVDVSGPEQCPEEGRLPAA-------------GPPSPA 234 (387)
Q Consensus 175 iK~~~~--~VScADiiaLAa~~AV~~~---GGP--~i~v~~GR~D~~~s~~~~~~g~LP~~-------------~p~~~~ 234 (387)
||++|+ .||+||||+||+.+|||.+ ||| .|||.+||.|++... +++++..|.. ....+.
T Consensus 502 Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~-td~~~~~~l~p~adgfRn~~~~~~~~~~~ 580 (716)
T TIGR00198 502 IQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAM-TDAESFTPLEPIADGFRNYLKRDYAVTPE 580 (716)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCC-CCccccccCCCCCcccchhccccccCCHH
Confidence 999998 8999999999999999999 897 689999999997653 4455544421 012345
Q ss_pred HHHHHHHHHcCCChhhhHHhcccc-ccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccChHHHHHhhhcc----
Q 016584 235 EHLRNVFYRMGLNDKEIVALSGAH-TVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERR---- 309 (387)
Q Consensus 235 ~~L~~~F~~~GLs~~EmVALsGaH-TIG~~hc~~~g~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yyk~ll~~~---- 309 (387)
+.|+++|.++|||++|||||+||| ++|++|.. ++. ..|+.+|.+|||.||+||++..
T Consensus 581 ~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~-s~~-----------------G~~T~~p~~f~NdfF~~LLd~~~~w~ 642 (716)
T TIGR00198 581 ELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGG-SKH-----------------GVFTDRVGVLSNDFFVNLLDMAYEWR 642 (716)
T ss_pred HHHHHHHHhCCCChHHHHheecchhhccccCCC-CCC-----------------CCCcCCCCccccHHHHHHhcCCceee
Confidence 678999999999999999999995 99998864 222 2488999999999999999721
Q ss_pred ---------------CCCcccc--cccccccCCcchHHHHHHHhhCH--HHHHHHHHHHHHHHHcCCCCCCCC
Q 016584 310 ---------------DEDLLVL--PTDAVLFEDPSFKVYAEKYAEDQ--EAFFKDYAEAHAKLSNLGAKFDPP 363 (387)
Q Consensus 310 ---------------g~~~llL--~SD~~L~~D~~t~~~V~~yA~d~--~~F~~dFa~Am~KM~~lgv~t~~~ 363 (387)
.+.+.++ ++|.+|..|+++|++|+.||.|+ +.|++||++||.|+.++|. |+.+
T Consensus 643 ~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldr-fd~~ 714 (716)
T TIGR00198 643 AADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDR-FDLP 714 (716)
T ss_pred ecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCCC-cccc
Confidence 1223343 77999999999999999999997 8999999999999999986 4443
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.3e-42 Score=365.11 Aligned_cols=224 Identities=27% Similarity=0.411 Sum_probs=190.9
Q ss_pred HHHHcCCchhhHHHHHhhhccCCCCCCCCCCCCCCCCcc-ccchhhhhhhccc--CcHHHHHHHHHHhhhC-------CC
Q 016584 112 ELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANAS-LRFEVELKHAANA--GLVNALKLIQPIKDKY-------SG 181 (387)
Q Consensus 112 ~~l~~~~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDgS-I~~~~E~~~~~N~--gL~~~~~~i~~iK~~~-------~~ 181 (387)
+++.++...+.||||+||++.|||.++ ++||+||. |||++|++|+.|. +|.+++++|++||++| +.
T Consensus 447 ~i~~~gl~~~~LVr~AWhsA~Tyr~sd----~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~ 522 (726)
T PRK15061 447 KILASGLSVSELVSTAWASASTFRGSD----KRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKK 522 (726)
T ss_pred HHHhcCCcHHHHHHHHHhhcccccCCC----CCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCc
Confidence 345667789999999999999999986 69999996 9999999999999 9999999999999998 57
Q ss_pred CCHHHHHHHHHHHHHHHh---CC--CccCCcCCCCCCCCCCCCCccC---CCCCCC----------CCCChHHHHHHHHH
Q 016584 182 VTYADLFQLASATAIEEA---GG--PKIPMKYGRVDVSGPEQCPEEG---RLPAAG----------PPSPAEHLRNVFYR 243 (387)
Q Consensus 182 VScADiiaLAa~~AV~~~---GG--P~i~v~~GR~D~~~s~~~~~~g---~LP~~~----------p~~~~~~L~~~F~~ 243 (387)
||+||||+||+.+|||.+ || |.|||.+||.|++.. +++++. ++|.+. ...+.++|+++|.+
T Consensus 523 vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~-~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~ 601 (726)
T PRK15061 523 VSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQE-QTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQL 601 (726)
T ss_pred eeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccC-CCCcccccccCCCCccccccccccCCCCHHHHHHHHHHh
Confidence 999999999999999999 58 999999999999764 444443 456532 11245789999999
Q ss_pred cCCChhhhHHhcccc-ccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccChHHHHHhhhcc-------------
Q 016584 244 MGLNDKEIVALSGAH-TVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERR------------- 309 (387)
Q Consensus 244 ~GLs~~EmVALsGaH-TIG~~hc~~~g~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yyk~ll~~~------------- 309 (387)
||||+.|||||+||| ++|+.|.. ++. ..||.+|.+|||.||+||++-.
T Consensus 602 lglt~~EmvaL~Gg~r~Lg~~~~~-S~~-----------------G~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~y 663 (726)
T PRK15061 602 LTLTAPEMTVLVGGLRVLGANYGG-SKH-----------------GVFTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVY 663 (726)
T ss_pred CCCChHHHhheecchhhcccCCCC-CCC-----------------CCCcCCCCccccHHHHHHhcCCceeeecCCCCCce
Confidence 999999999999997 78888743 332 2488899999999999999521
Q ss_pred ------CCCccc--ccccccccCCcchHHHHHHHhhC--HHHHHHHHHHHHHHHHcCCC
Q 016584 310 ------DEDLLV--LPTDAVLFEDPSFKVYAEKYAED--QEAFFKDYAEAHAKLSNLGA 358 (387)
Q Consensus 310 ------g~~~ll--L~SD~~L~~D~~t~~~V~~yA~d--~~~F~~dFa~Am~KM~~lgv 358 (387)
.+.+++ +++|.+|..|+.+|++|+.||.| ++.|++||++||.|+.++|.
T Consensus 664 e~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 664 EGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred eeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence 233444 47899999999999999999999 99999999999999999975
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-42 Score=349.37 Aligned_cols=282 Identities=30% Similarity=0.497 Sum_probs=234.5
Q ss_pred CCCcccccccccccccCcCccccCCCCCCCccCCCCChhHHHHHHHHHHHHHHcC---------CchhhHHHHHhhhccC
Q 016584 63 SPSSLKCLRFSPLISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKST---------FCHPILVRLGWHDAGT 133 (387)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~v~~~i~~~l~~~---------~~a~~lLRLaFHDc~t 133 (387)
-.++|++|++|...|+|.|. .|+++ .+...-+++.|+.++++++++. ..+|.+|||+||-++|
T Consensus 37 N~L~l~iL~qh~~~snP~g~---~fdYa-----eefk~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGT 108 (730)
T COG0376 37 NQLNLKILHQHSSKSNPMGE---DFDYA-----EEFKSLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGT 108 (730)
T ss_pred ccccchHHhhhhcccCCCcc---chHHH-----HHhhhccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCc
Confidence 47899999999999999996 78884 5556778899999999999874 2589999999999999
Q ss_pred CCCCCCCCCCCCCCC-ccccchhhhhhhcccCcHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHHHhCCCccCCcCCCC
Q 016584 134 YDKNIEEWPRRGGAN-ASLRFEVELKHAANAGLVNALKLIQPIKDKYS-GVTYADLFQLASATAIEEAGGPKIPMKYGRV 211 (387)
Q Consensus 134 ~d~~~~~~~~~GGcD-gSI~~~~E~~~~~N~gL~~~~~~i~~iK~~~~-~VScADiiaLAa~~AV~~~GGP~i~v~~GR~ 211 (387)
|+..+ ++||+. |..||.++.+||.|.+|++++++|.+||.+|. .||+||||.|++++|+|.+|++++.|..||.
T Consensus 109 YRi~D----GRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~ 184 (730)
T COG0376 109 YRIGD----GRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGRE 184 (730)
T ss_pred eeccc----CCCCCCCCceecccccCCCcccchHHHHHHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCC
Confidence 99875 688885 69999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred CCCCCCCC-------------------------------------CccCCCCCCCCCCChHHHHHHHHHcCCChhhhHHh
Q 016584 212 DVSGPEQC-------------------------------------PEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVAL 254 (387)
Q Consensus 212 D~~~s~~~-------------------------------------~~~g~LP~~~p~~~~~~L~~~F~~~GLs~~EmVAL 254 (387)
|...+... +-.+..|+ |-..+.++++.|+||+++++|.|||
T Consensus 185 D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PD--pl~aA~dIRetFaRMaMNDeETVAL 262 (730)
T COG0376 185 DVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPD--PLAAARDIRETFARMAMNDEETVAL 262 (730)
T ss_pred cCCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCCCCCCCC--hhhhHHHHHHHHHHhcCCcHhhhhh
Confidence 99887650 01122455 5667889999999999999999999
Q ss_pred c-cccccccccCCCC-CCCCCCCc--------------c-cCCCCCC--CC-CCCccccccccChHHHHHhhhcc-----
Q 016584 255 S-GAHTVGRSRPERS-GWGKPETK--------------Y-TKDGPGA--PG-GQSWTVQWLKFDNSYFKDIKERR----- 309 (387)
Q Consensus 255 s-GaHTIG~~hc~~~-g~g~pd~~--------------~-~~~cP~~--~~-~~~~~~tp~~FDN~Yyk~ll~~~----- 309 (387)
+ ||||+|++|-... ..-.|+|. | .+.++.+ .| +..|+.+|++|||+||.+|+...
T Consensus 263 iaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltk 342 (730)
T COG0376 263 IAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTK 342 (730)
T ss_pred hhcccccccccCCCchhhcCCCccccchhhhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeec
Confidence 9 7999999995321 01112221 1 1122221 11 56799999999999999997621
Q ss_pred -----------C---------------CCcccccccccccCCcchHHHHHHHhhCHHHHHHHHHHHHHHHHcCCC
Q 016584 310 -----------D---------------EDLLVLPTDAVLFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLGA 358 (387)
Q Consensus 310 -----------g---------------~~~llL~SD~~L~~D~~t~~~V~~yA~d~~~F~~dFa~Am~KM~~lgv 358 (387)
. ..++||.+|.+|..||.++++.++|.+|++.|.+.|++||-||..-+.
T Consensus 343 sPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRDM 417 (730)
T COG0376 343 SPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRDM 417 (730)
T ss_pred CCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhccC
Confidence 0 257899999999999999999999999999999999999999998543
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3e-18 Score=175.69 Aligned_cols=224 Identities=27% Similarity=0.404 Sum_probs=171.3
Q ss_pred HHHHcCCchhhHHHHHhhhccCCCCCCCCCCCCCCCCc-cccchhhhhhhccc--CcHHHHHHHHHHhhhCC-CCCHHHH
Q 016584 112 ELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANA-SLRFEVELKHAANA--GLVNALKLIQPIKDKYS-GVTYADL 187 (387)
Q Consensus 112 ~~l~~~~~a~~lLRLaFHDc~t~d~~~~~~~~~GGcDg-SI~~~~E~~~~~N~--gL~~~~~~i~~iK~~~~-~VScADi 187 (387)
+++.++-....||-.+|-.+.||+.++ ++||+|| .|++.+.++|+.|. .|.+.+.+++.|.+.+. .||.|||
T Consensus 457 ~IlasgLsvs~lVstAWaSAsTfRgsD----kRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~fnkkvSlADl 532 (730)
T COG0376 457 KILASGLSVSQLVSTAWASASTFRGSD----KRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFNKKVSLADL 532 (730)
T ss_pred HHHHccCCHHHHHHHHHHhhhhccCCc----ccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHhcCccchhHh
Confidence 345667778999999999999999875 6899998 99999999999995 57788999999999886 5999999
Q ss_pred HHHHHHHHHHHh---CC--CccCCcCCCCCCCCCCCCCccCCC---CC----------CCCCCChHHHHHHHHHcCCChh
Q 016584 188 FQLASATAIEEA---GG--PKIPMKYGRVDVSGPEQCPEEGRL---PA----------AGPPSPAEHLRNVFYRMGLNDK 249 (387)
Q Consensus 188 iaLAa~~AV~~~---GG--P~i~v~~GR~D~~~s~~~~~~g~L---P~----------~~p~~~~~~L~~~F~~~GLs~~ 249 (387)
|+|++..|||.+ +| -.+||.+||.|++.. +++++..- |- ...-.+.+-|++.-+-.+|+.-
T Consensus 533 IVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qe-qtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~Ltap 611 (730)
T COG0376 533 IVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQE-QTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAP 611 (730)
T ss_pred eeecchHHHHHHHHhcCceeeeccCCCCcccchh-hcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCc
Confidence 999999999987 45 457899999999753 34333211 11 1122334457888889999999
Q ss_pred hhHHhcccc-ccccccCCCCCCCCCCCcccCCCCCCCCCCCccccccccChHHHHHhhhc-------------------c
Q 016584 250 EIVALSGAH-TVGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKER-------------------R 309 (387)
Q Consensus 250 EmVALsGaH-TIG~~hc~~~g~g~pd~~~~~~cP~~~~~~~~~~tp~~FDN~Yyk~ll~~-------------------~ 309 (387)
||++|+||- -+|..+.. +.. .-|+..|..+.|.||.||++- +
T Consensus 612 emtVLiGGlRvLg~n~g~-s~~-----------------GVfT~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~Drk 673 (730)
T COG0376 612 EMTVLIGGLRVLGANYGG-SKH-----------------GVFTDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRK 673 (730)
T ss_pred cceEEEcceEeeccCCCC-Ccc-----------------ceeccCcccccchhhhhhhhccceeeeccccccceeccccc
Confidence 999999876 35543221 111 124556778889999999861 1
Q ss_pred CCCccc--ccccccccCCcchHHHHHHHhhC--HHHHHHHHHHHHHHHHcCCC
Q 016584 310 DEDLLV--LPTDAVLFEDPSFKVYAEKYAED--QEAFFKDYAEAHAKLSNLGA 358 (387)
Q Consensus 310 g~~~ll--L~SD~~L~~D~~t~~~V~~yA~d--~~~F~~dFa~Am~KM~~lgv 358 (387)
.+.+-+ -..|..+-.++..|.+.+.||.+ ++.|.+||..||.|..++..
T Consensus 674 tG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~DR 726 (730)
T COG0376 674 TGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLDR 726 (730)
T ss_pred cCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc
Confidence 122323 35577778899999999999986 78999999999999999853
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=68.51 E-value=4.4 Score=33.07 Aligned_cols=44 Identities=27% Similarity=0.307 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCeeeCCCCC-c-ccccccccCCCC
Q 016584 341 AFFKDYAEAHAKLSNLGAKFDPPEGIVLDDGAA-P-EKFVAAKYSSGK 386 (387)
Q Consensus 341 ~F~~dFa~Am~KM~~lgv~t~~~~gv~l~~~~~-~-~~~~~~~~~~~~ 386 (387)
...+.|..||.||+.||.. ...=|-.++.|- | .....+.|+-||
T Consensus 2 ~m~~~F~~am~KlavLG~d--~~~LiDCSdVIP~p~p~~~~a~fPAg~ 47 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD--RSDLIDCSDVIPVPKPLTGKAHFPAGK 47 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS---GGGSEE-GGGS----S-SSSSEBGTT-
T ss_pred hHHHHHHHHHHHHHHhcCC--hhhcccchhhccCCCCCCCCcccCCCC
Confidence 3568999999999999984 333344444421 1 233356666665
No 20
>PTZ00411 transaldolase-like protein; Provisional
Probab=33.68 E-value=41 Score=34.36 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHH--HHHHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCC-CCCChHHHHHHHHH
Q 016584 167 NALKLIQPIKDKYSGVTYADLFQLA--SATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAG-PPSPAEHLRNVFYR 243 (387)
Q Consensus 167 ~~~~~i~~iK~~~~~VScADiiaLA--a~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~-p~~~~~~L~~~F~~ 243 (387)
.|+..++.+++. +|.|==-+.+. =..+...+|-..|..++||.|.+.-.........+... .-..+.++.+.|++
T Consensus 148 eGi~Aa~~L~~e--GI~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~ 225 (333)
T PTZ00411 148 EGIQAAKALEKE--GIHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKK 225 (333)
T ss_pred HHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHH
Confidence 456666666543 33332222222 22333445888899999999765322111111111100 01235567777888
Q ss_pred cCC----------ChhhhHHhcccccc
Q 016584 244 MGL----------NDKEIVALSGAHTV 260 (387)
Q Consensus 244 ~GL----------s~~EmVALsGaHTI 260 (387)
.|+ +.+|+..|.|+|.+
T Consensus 226 ~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 226 HGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 886 45788888898854
No 21
>PRK12346 transaldolase A; Provisional
Probab=32.31 E-value=39 Score=34.22 Aligned_cols=92 Identities=15% Similarity=0.200 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHH--HHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCC-CCCChHHHHHHHHH
Q 016584 167 NALKLIQPIKDKYSGVTYADLFQLASA--TAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAG-PPSPAEHLRNVFYR 243 (387)
Q Consensus 167 ~~~~~i~~iK~~~~~VScADiiaLAa~--~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~-p~~~~~~L~~~F~~ 243 (387)
.|+..++.+++. +|+|-=-+.+... .+...+|-..|..++||.|...-........-+... .-..+.++.+.|++
T Consensus 137 eGi~A~~~L~~~--GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~ 214 (316)
T PRK12346 137 EGIRAAEELEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQ 214 (316)
T ss_pred HHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 355566655543 4444333333333 334445888999999999875322111111111100 11235667778888
Q ss_pred cCC----------ChhhhHHhcccccc
Q 016584 244 MGL----------NDKEIVALSGAHTV 260 (387)
Q Consensus 244 ~GL----------s~~EmVALsGaHTI 260 (387)
.|+ +.+|+.+|.|+|.+
T Consensus 215 ~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 215 HRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 775 45788888888854
No 22
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=21.79 E-value=1.3e+02 Score=31.49 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHH--HHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCC-C-CCChHHHHHHHH
Q 016584 167 NALKLIQPIKDKYSGVTYADLFQLASA--TAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAG-P-PSPAEHLRNVFY 242 (387)
Q Consensus 167 ~~~~~i~~iK~~~~~VScADiiaLAa~--~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~-p-~~~~~~L~~~F~ 242 (387)
.|+..+..+++. +|.|-=-+.+... .+...+|-..|..++||.|.+.-..... ..+|... | -..+.++.+.|+
T Consensus 142 eGi~A~~~L~~~--GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~-~~~~~~~dpGv~~v~~i~~~~~ 218 (391)
T PRK12309 142 EGIKAAEVLEKE--GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGR-DSYPGAEDPGVQSVTQIYNYYK 218 (391)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCC-CccccccchHHHHHHHHHHHHH
Confidence 456666666543 3333332233332 3333458889999999998743221110 1123210 0 113556677777
Q ss_pred HcCC----------ChhhhHHhcccccc
Q 016584 243 RMGL----------NDKEIVALSGAHTV 260 (387)
Q Consensus 243 ~~GL----------s~~EmVALsGaHTI 260 (387)
+.|+ +..|+..|.|+|.+
T Consensus 219 ~~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 219 KFGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred hcCCCcEEEecccCCHHHHHHHHCCCee
Confidence 7775 45677778888854
No 23
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=20.57 E-value=2.1e+02 Score=22.07 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=24.8
Q ss_pred CcHHHHHHHHHHhhhC-----CCCCHHHHHHHHHHHHHHHhCC
Q 016584 164 GLVNALKLIQPIKDKY-----SGVTYADLFQLASATAIEEAGG 201 (387)
Q Consensus 164 gL~~~~~~i~~iK~~~-----~~VScADiiaLAa~~AV~~~GG 201 (387)
.+.+.++.+++.-..- +.+|+|||..+....-+...+.
T Consensus 32 ~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~ 74 (95)
T PF00043_consen 32 KVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGP 74 (95)
T ss_dssp HHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCC
Confidence 3445677777665432 2699999999888776666543
No 24
>PRK05269 transaldolase B; Provisional
Probab=20.25 E-value=80 Score=31.99 Aligned_cols=92 Identities=21% Similarity=0.286 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhhCCCCCHHH--HHHHHHHHHHHHhCCCccCCcCCCCCCCCCCCCCccCCCCCCC-CCCChHHHHHHHHH
Q 016584 167 NALKLIQPIKDKYSGVTYAD--LFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAG-PPSPAEHLRNVFYR 243 (387)
Q Consensus 167 ~~~~~i~~iK~~~~~VScAD--iiaLAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~~g~LP~~~-p~~~~~~L~~~F~~ 243 (387)
.|+..++.+++. +|.|-= +..++=..+...+|-..|..++||.|...-........-+... .-..+.++.+.|++
T Consensus 138 eGi~A~~~L~~~--GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~ 215 (318)
T PRK05269 138 EGIRAAEQLEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKK 215 (318)
T ss_pred HHHHHHHHHHHc--CCceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHH
Confidence 455556555543 333322 2222223333445888899999999864221110001111100 11236667778888
Q ss_pred cCCC----------hhhhHHhcccccc
Q 016584 244 MGLN----------DKEIVALSGAHTV 260 (387)
Q Consensus 244 ~GLs----------~~EmVALsGaHTI 260 (387)
.|+. ..|+..|.|+|++
T Consensus 216 ~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 216 HGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred cCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 7764 4667778888865
Done!