Query 016585
Match_columns 387
No_of_seqs 168 out of 453
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 1.2E-28 3.9E-33 191.8 7.5 62 214-276 2-63 (64)
2 2yus_A SWI/SNF-related matrix- 95.2 0.038 1.3E-06 43.8 6.1 51 215-271 14-64 (79)
3 2yum_A ZZZ3 protein, zinc fing 94.9 0.042 1.4E-06 42.1 5.5 54 219-275 8-64 (75)
4 2cu7_A KIAA1915 protein; nucle 93.9 0.15 5.1E-06 39.0 6.4 53 217-275 7-59 (72)
5 1x41_A Transcriptional adaptor 93.7 0.16 5.6E-06 37.5 6.3 48 218-271 7-55 (60)
6 2xag_B REST corepressor 1; ami 91.6 0.23 7.9E-06 51.2 6.1 52 216-273 377-428 (482)
7 2iw5_B Protein corest, REST co 91.3 0.26 9E-06 46.7 5.7 52 215-272 129-180 (235)
8 1ity_A TRF1; helix-turn-helix, 91.1 0.54 1.9E-05 35.4 6.3 52 214-269 5-57 (69)
9 2elk_A SPCC24B10.08C protein; 90.7 0.46 1.6E-05 35.0 5.5 48 219-271 9-57 (58)
10 2hzd_A Transcriptional enhance 90.0 0.32 1.1E-05 39.5 4.4 59 219-277 6-79 (82)
11 2d9a_A B-MYB, MYB-related prot 87.4 1.5 5.2E-05 31.9 6.2 48 216-269 5-53 (60)
12 2cqq_A RSGI RUH-037, DNAJ homo 87.4 2.2 7.5E-05 33.2 7.4 47 221-273 10-59 (72)
13 2aje_A Telomere repeat-binding 87.3 1.2 4.1E-05 37.2 6.2 58 213-277 7-67 (105)
14 3sjm_A Telomeric repeat-bindin 86.9 1.2 4.2E-05 33.6 5.5 45 217-265 9-54 (64)
15 1w0t_A Telomeric repeat bindin 84.3 2.1 7.3E-05 30.5 5.5 46 219-268 2-48 (53)
16 2eqr_A N-COR1, N-COR, nuclear 83.6 2.9 0.0001 31.0 6.2 52 214-274 7-58 (61)
17 2yqk_A Arginine-glutamic acid 83.5 2.6 9E-05 31.6 6.0 47 215-266 5-51 (63)
18 2cqr_A RSGI RUH-043, DNAJ homo 82.3 6.7 0.00023 30.5 8.0 51 218-271 17-68 (73)
19 2roh_A RTBP1, telomere binding 81.8 7 0.00024 33.5 8.6 56 213-275 25-83 (122)
20 1guu_A C-MYB, MYB proto-oncoge 79.9 3.2 0.00011 29.3 5.0 46 219-269 3-48 (52)
21 2dim_A Cell division cycle 5-l 79.7 4.5 0.00016 30.3 6.1 48 216-269 6-54 (70)
22 2akf_A Coronin-1A; coiled coil 74.0 1.5 5.1E-05 29.8 1.7 30 14-43 1-30 (32)
23 1gvd_A MYB proto-oncogene prot 73.3 5.9 0.0002 27.9 4.9 45 219-269 3-48 (52)
24 2crg_A Metastasis associated p 71.0 6.7 0.00023 30.1 5.1 47 215-266 4-50 (70)
25 1wgx_A KIAA1903 protein; MYB D 68.0 11 0.00037 29.7 5.7 46 221-269 10-56 (73)
26 2din_A Cell division cycle 5-l 67.6 13 0.00043 27.5 5.8 48 218-272 8-55 (66)
27 2cjj_A Radialis; plant develop 65.0 10 0.00035 30.8 5.2 48 221-273 10-60 (93)
28 2da3_A Alpha-fetoprotein enhan 63.2 22 0.00074 26.7 6.5 62 213-277 15-76 (80)
29 2k9n_A MYB24; R2R3 domain, DNA 62.9 13 0.00044 29.9 5.5 47 220-272 54-100 (107)
30 1x58_A Hypothetical protein 49 62.6 22 0.00077 27.3 6.5 55 216-277 5-60 (62)
31 1gv2_A C-MYB, MYB proto-oncoge 60.5 11 0.00037 29.9 4.6 43 219-267 56-98 (105)
32 4eef_G F-HB80.4, designed hema 55.2 3.7 0.00012 32.8 0.9 45 221-268 22-67 (74)
33 3osg_A MYB21; transcription-DN 53.3 18 0.00063 29.8 5.0 46 221-272 64-109 (126)
34 1h8a_C AMV V-MYB, MYB transfor 52.1 16 0.00056 30.0 4.5 42 220-267 80-121 (128)
35 2dms_A Homeobox protein OTX2; 51.9 72 0.0025 24.0 7.8 64 213-279 5-68 (80)
36 2dmt_A Homeobox protein BARH-l 51.9 75 0.0025 24.0 8.0 63 213-278 15-77 (80)
37 2juh_A Telomere binding protei 51.5 28 0.00097 29.7 5.9 55 213-274 11-68 (121)
38 3osg_A MYB21; transcription-DN 50.7 26 0.0009 28.9 5.5 49 215-269 7-55 (126)
39 2ltp_A Nuclear receptor corepr 55.6 3.4 0.00012 32.9 0.0 45 221-271 18-62 (89)
40 1gv2_A C-MYB, MYB proto-oncoge 49.0 24 0.00084 27.8 4.9 46 219-269 4-49 (105)
41 3zqc_A MYB3; transcription-DNA 46.8 27 0.00093 28.9 5.1 43 221-269 56-98 (131)
42 2llk_A Cyclin-D-binding MYB-li 45.6 40 0.0014 26.2 5.5 43 218-267 22-64 (73)
43 3hug_A RNA polymerase sigma fa 42.4 13 0.00044 28.4 2.2 29 244-275 55-83 (92)
44 1h89_C C-MYB, MYB proto-oncoge 41.7 40 0.0014 28.6 5.5 43 219-267 110-152 (159)
45 2p7v_B Sigma-70, RNA polymeras 41.7 46 0.0016 23.8 5.0 46 228-276 11-56 (68)
46 2cra_A Homeobox protein HOX-B1 40.1 1.1E+02 0.0037 22.4 7.5 63 213-278 5-67 (70)
47 2k9n_A MYB24; R2R3 domain, DNA 40.0 47 0.0016 26.5 5.3 44 220-268 2-45 (107)
48 2ckx_A NGTRF1, telomere bindin 39.5 51 0.0017 26.1 5.3 47 221-274 2-51 (83)
49 1vp7_A Exodeoxyribonuclease VI 38.7 52 0.0018 27.3 5.5 37 1-46 30-68 (100)
50 1h8a_C AMV V-MYB, MYB transfor 38.4 60 0.0021 26.6 5.9 45 219-269 27-72 (128)
51 1qgp_A Protein (double strande 36.7 41 0.0014 25.7 4.2 46 222-270 11-56 (77)
52 2djn_A Homeobox protein DLX-5; 36.4 1.2E+02 0.0041 22.1 6.7 63 213-278 5-67 (70)
53 2xa6_A KH domain-containing\,R 34.5 60 0.002 23.3 4.4 35 9-46 5-39 (41)
54 4dac_A Computationally designe 34.4 34 0.0012 22.4 2.9 20 7-26 3-22 (28)
55 1tty_A Sigma-A, RNA polymerase 33.7 73 0.0025 24.0 5.3 46 228-276 24-69 (87)
56 1kkx_A Transcription regulator 32.8 14 0.00048 31.1 1.1 45 225-272 49-97 (123)
57 2e1o_A Homeobox protein PRH; D 32.1 99 0.0034 22.6 5.6 61 214-277 6-66 (70)
58 2dmu_A Homeobox protein goosec 31.0 1.1E+02 0.0039 22.2 5.8 63 213-278 5-67 (70)
59 1wh5_A ZF-HD homeobox family p 30.9 1.8E+02 0.0061 22.2 8.3 63 213-275 15-78 (80)
60 2dmq_A LIM/homeobox protein LH 30.3 1.1E+02 0.0039 22.8 5.8 61 213-276 5-65 (80)
61 1ku3_A Sigma factor SIGA; heli 29.4 86 0.0029 22.6 4.9 47 225-274 13-59 (73)
62 1h89_C C-MYB, MYB proto-oncoge 29.1 89 0.003 26.4 5.6 46 219-269 58-103 (159)
63 3zqc_A MYB3; transcription-DNA 28.3 51 0.0017 27.3 3.8 43 221-269 4-47 (131)
64 4fla_A Regulation of nuclear P 27.9 92 0.0031 27.3 5.5 39 4-49 78-116 (152)
65 2dmn_A Homeobox protein TGIF2L 27.2 1.2E+02 0.0042 23.1 5.6 64 213-276 5-68 (83)
66 2da1_A Alpha-fetoprotein enhan 27.0 1.6E+02 0.0055 21.3 6.0 62 213-277 5-66 (70)
67 4a69_C Nuclear receptor corepr 26.0 38 0.0013 27.2 2.6 41 217-263 41-81 (94)
68 2l7z_A Homeobox protein HOX-A1 25.0 1.7E+02 0.006 21.5 6.0 64 214-280 6-69 (73)
69 1du6_A PBX1, homeobox protein 24.9 1.8E+02 0.0061 20.7 5.8 61 215-275 3-63 (64)
70 3b73_A PHIH1 repressor-like pr 24.6 1E+02 0.0036 25.3 5.0 50 219-272 7-56 (111)
71 1tc3_C Protein (TC3 transposas 24.0 1.2E+02 0.0042 18.8 4.4 41 223-271 7-47 (51)
72 2li6_A SWI/SNF chromatin-remod 22.3 20 0.00067 29.6 0.2 44 224-270 49-96 (116)
73 3s9g_A Protein hexim1; cyclin 21.9 1.2E+02 0.0041 25.6 4.8 43 9-51 41-83 (104)
74 2lfw_A PHYR sigma-like domain; 21.9 1.3E+02 0.0044 24.7 5.1 35 241-278 108-142 (157)
75 1x3u_A Transcriptional regulat 21.7 1.8E+02 0.0061 20.7 5.3 32 241-275 30-61 (79)
76 2kt0_A Nanog, homeobox protein 21.2 2.6E+02 0.009 20.9 8.3 62 212-276 19-80 (84)
77 3m3w_A Pacsin3, protein kinase 20.8 90 0.0031 29.3 4.4 49 3-51 220-274 (320)
78 3hls_A Guanylate cyclase solub 20.3 80 0.0027 24.0 3.2 21 7-27 30-50 (66)
79 2cue_A Paired box protein PAX6 20.1 2.1E+02 0.0071 21.5 5.6 60 213-275 5-64 (80)
80 2jxj_A Histone demethylase jar 20.0 26 0.0009 27.6 0.4 44 225-269 37-86 (96)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=1.2e-28 Score=191.79 Aligned_cols=62 Identities=48% Similarity=0.803 Sum_probs=59.5
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCC
Q 016585 214 PQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP 276 (387)
Q Consensus 214 ~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~ 276 (387)
+.+|+|++||+|||++||+||++|| .++||||.|+++|+|+|||++||+|||||||+.++|.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 4689999999999999999999999 7999999999999999999999999999999999884
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=95.19 E-value=0.038 Score=43.77 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=42.8
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhh
Q 016585 215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRL 271 (387)
Q Consensus 215 ~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl 271 (387)
....+-.||+|-+.+|++||+.+|+-+ +.|-++|+ +=|..||+.|-++|-+
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W----~~IA~~v~--~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDDW----NKVSEHVG--SRTQDECILHFLRLPI 64 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSCH----HHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCH----HHHHHHcC--CCCHHHHHHHHHHhcc
Confidence 444566899999999999999999666 88888875 6799999999988733
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.91 E-value=0.042 Score=42.13 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=41.9
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCCh---HHHHhHhcCCCCCHHHHHHhhhhhhhhccC
Q 016585 219 RRSWSPELHRRFLHALQQLGGSHAATP---KQIRELMNVDGLTNDEVKSHLQKYRLHTRR 275 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LGG~~~AtP---K~IlelM~V~gLT~~~VkSHLQKYRl~~rr 275 (387)
+-.||+|=+.+|+++|..+|. +.-.| ..|-+.| +|=|..||+.|-|+|-....+
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHHh
Confidence 447999999999999999992 22112 4576776 578999999999999776544
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.86 E-value=0.15 Score=38.98 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=42.7
Q ss_pred CCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccC
Q 016585 217 KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRR 275 (387)
Q Consensus 217 K~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr 275 (387)
..+-.||+|-+..|+++|..+|--+ ..|-.+| +|=|..+|+.|-++|-....+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W----~~Ia~~~--~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRW----TKISKLI--GSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCH----HHHHHHH--SSSCHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCH----HHHHHHc--CCCCHHHHHHHHHHHHHHHHh
Confidence 3445899999999999999999433 6777765 678999999999998666544
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=93.73 E-value=0.16 Score=37.53 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=40.2
Q ss_pred CcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhh
Q 016585 218 QRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKYRL 271 (387)
Q Consensus 218 ~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl 271 (387)
.|-.||+|-..+|++||+.+| +-. +.|-+.| +|=|..+++.|-++|-.
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNW----QDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCH----HHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcH----HHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 345799999999999999999 555 7788887 57799999999887754
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=91.59 E-value=0.23 Score=51.18 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=44.9
Q ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhc
Q 016585 216 RKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHT 273 (387)
Q Consensus 216 rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~ 273 (387)
.+..-+||++-|..|++||.++|--+ +.|-++++-. |..||++|-++||..+
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGkdw----~~IA~~VgTK--T~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGRDF----QAISDVIGNK--SVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTTCH----HHHHHHHSSC--CHHHHHHHHHHTTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCcCH----HHHHHHhCCC--CHHHHHHHHHHHHHHh
Confidence 45567999999999999999999544 7898998876 9999999999998764
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=91.33 E-value=0.26 Score=46.70 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=43.2
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhh
Q 016585 215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLH 272 (387)
Q Consensus 215 ~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~ 272 (387)
..+..-+||+|-++.|++|+..+|--+ ..|-++| .+=|..+|+.|-++||..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGKDW----~~IAk~V--gTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGRDF----QAISDVI--GNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSSCH----HHHHHHH--SSCCHHHHHHHHHHTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCcCH----HHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 345566899999999999999999544 7788875 556999999999999865
No 8
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=91.15 E-value=0.54 Score=35.44 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=43.1
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585 214 PQRKQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 214 ~~rK~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKY 269 (387)
..++.|-.||+|--...+++|+.+| |-. ..|...|.+.|=|..+++-+-..|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNW----SKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCH----HHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcH----HHHHHHcCcCCCCHHHHHHHHHHH
Confidence 4677888999999999999999999 556 889998876588999998764444
No 9
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=90.75 E-value=0.46 Score=34.97 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=39.6
Q ss_pred cccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhh
Q 016585 219 RRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKYRL 271 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl 271 (387)
+-.||+|-.+++++||+.+| +-. +.|-+.|+. |=|..+++.|-++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W----~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNW----ADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCH----HHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 34699999999999999999 655 778888752 5699999999888754
No 10
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=89.99 E-value=0.32 Score=39.47 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=38.0
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCChH------------HHHhHhc---CCCCCHHHHHHhhhhhhhhccCCC
Q 016585 219 RRSWSPELHRRFLHALQQLGGSHAATPK------------QIRELMN---VDGLTNDEVKSHLQKYRLHTRRPS 277 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LGG~~~AtPK------------~IlelM~---V~gLT~~~VkSHLQKYRl~~rr~~ 277 (387)
.-+|.++|-..|++|+..+-=....+-+ -|.+-+. -.-=|+.||.||||--|....+..
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~~~ 79 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRDL 79 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTTCC
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhhhh
Confidence 3489999999999999977511112111 0111111 134689999999999888776643
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=87.39 E-value=1.5 Score=31.94 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=38.4
Q ss_pred CCCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585 216 RKQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 216 rK~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKY 269 (387)
...|-.||+|-..+++++|.++| +-. ..|-+.| +|=|..+++.|-++|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDW----KFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCH----HHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCH----HHHHHHc--cCCCHHHHHHHHHHH
Confidence 44556899999999999999999 444 7777776 577999999776655
No 12
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.35 E-value=2.2 Score=33.19 Aligned_cols=47 Identities=17% Similarity=0.382 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCChH---HHHhHhcCCCCCHHHHHHhhhhhhhhc
Q 016585 221 SWSPELHRRFLHALQQLGGSHAATPK---QIRELMNVDGLTNDEVKSHLQKYRLHT 273 (387)
Q Consensus 221 ~WT~ELH~rFv~Av~~LGG~~~AtPK---~IlelM~V~gLT~~~VkSHLQKYRl~~ 273 (387)
.||.|=++.|+.||..+++ -||. .|-+.| |=|-.+|+.|-+++....
T Consensus 10 ~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhc
Confidence 6999999999999999983 3554 477777 569999999988876554
No 13
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=87.34 E-value=1.2 Score=37.25 Aligned_cols=58 Identities=24% Similarity=0.409 Sum_probs=46.0
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhc--CCCCCHHHHHHhhhhhhhhccCCC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMN--VDGLTNDEVKSHLQKYRLHTRRPS 277 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~--V~gLT~~~VkSHLQKYRl~~rr~~ 277 (387)
...++.|..||+|--...+++|+.+| |.+ +.|+..+. .+|=|..++| .|||..+++..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W----~~I~~~~~~~f~~RT~v~lK---drWrnllk~~~ 67 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRW----RDVKLCAFEDADHRTYVDLK---DKWKTLVHTAK 67 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSH----HHHHSSSSSSTTCCCHHHHH---HHHHHHHHTTT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCh----HHHHHHhccccCCCCHHHHH---HHHHHHHhhcc
Confidence 45788899999999999999999999 356 78888663 4888999999 46777776543
No 14
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=86.90 E-value=1.2 Score=33.62 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=37.1
Q ss_pred CCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHh
Q 016585 217 KQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSH 265 (387)
Q Consensus 217 K~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSH 265 (387)
+.|..||+|--..++++|+.+| |-. +.|.+.+.+.|=|..+++-+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNW----AAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCH----HHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCch----HHHHhhcCCCCCCHHHHHHH
Confidence 3456899999999999999999 445 78998888888899988843
No 15
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=84.29 E-value=2.1 Score=30.51 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=37.4
Q ss_pred cccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhh
Q 016585 219 RRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQK 268 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQK 268 (387)
|-.||+|-....+++|+.+| |-. ..|.+.|+..|=|..+++-+-..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~~ 48 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNW----SKILLHYKFNNRTSVMLKDRWRT 48 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCH----HHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHcCCCCCCHHHHHHHHHH
Confidence 45799999999999999999 555 88888887557788888865443
No 16
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.59 E-value=2.9 Score=30.95 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=38.0
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhcc
Q 016585 214 PQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTR 274 (387)
Q Consensus 214 ~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~r 274 (387)
..|+..-.||+|-|+.|++|+.++|--. ..|..+ |++=|..+|.-| |-+..+
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk~w----~~Ia~~--l~~rt~~~~v~~---Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPKNF----GLIASY--LERKSVPDCVLY---YYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTTCH----HHHHHH--CTTSCHHHHHHH---HHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCH----HHHHHH--cCCCCHHHHHHH---HHHhcC
Confidence 3556677999999999999999999322 566655 467788888754 444443
No 17
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.50 E-value=2.6 Score=31.61 Aligned_cols=47 Identities=19% Similarity=0.387 Sum_probs=32.3
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhh
Q 016585 215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHL 266 (387)
Q Consensus 215 ~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHL 266 (387)
++..+-.||+|=|+.|.+||.+.|= + =..|...| |+.-|..+|..+-
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHHHHH
Confidence 3444568999999999999999992 1 14444411 5666888886443
No 18
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=82.27 E-value=6.7 Score=30.53 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=38.6
Q ss_pred CcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhc-CCCCCHHHHHHhhhhhhh
Q 016585 218 QRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMN-VDGLTNDEVKSHLQKYRL 271 (387)
Q Consensus 218 ~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~-V~gLT~~~VkSHLQKYRl 271 (387)
.+-.||.+-.+.|+.||..+|. -+|..--.+=. |+|=|..+|+.|-+.+..
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3446999999999999999992 26765433322 478999999999876643
No 19
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=81.76 E-value=7 Score=33.48 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=45.5
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhc--CCCCCHHHHHHhhhhhhhhccC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMN--VDGLTNDEVKSHLQKYRLHTRR 275 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~--V~gLT~~~VkSHLQKYRl~~rr 275 (387)
...++.|..||+|--...+++|+.+| |.+ +.|+..+. .+|=|..++| .|||..++.
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W----~~I~~~~~~~~~~RT~vdlK---dRWrnllk~ 83 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRW----RDVKFRAFENVHHRTYVDLK---DKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCH----HHHHHHHHSSSCCCCHHHHH---HHHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCCh----HHHHHHhccccCCCCHHHHH---HHHHHHHhh
Confidence 35778888999999999999999999 456 78888653 4888999999 567777654
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=79.94 E-value=3.2 Score=29.29 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=36.4
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585 219 RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKY 269 (387)
|-.||+|-...++++|+.+|. ..=..|-+.| +|=|..+|+.|-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 447999999999999999993 1237777776 577999999886665
No 21
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.70 E-value=4.5 Score=30.30 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=38.7
Q ss_pred CCCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585 216 RKQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 216 rK~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKY 269 (387)
...|-.||+|-.++++++|..+| +-. +.|-..|+ |=|..+++-|-..|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQW----SRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCH----HHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHhc--CCCHHHHHHHHHHH
Confidence 34455899999999999999999 444 77888875 77999999776665
No 22
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=74.01 E-value=1.5 Score=29.77 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhhhhcccchhhHHHHHHHHH
Q 016585 14 VEALEEEKRKIQVFQRELPLCLELVTQAIQ 43 (387)
Q Consensus 14 v~~LEEErrKIevFkRELPLCm~Ll~~aIe 43 (387)
|.+||||-||+++.-.||---++-|.+.+.
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999988887776666666554
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=73.29 E-value=5.9 Score=27.92 Aligned_cols=45 Identities=16% Similarity=0.389 Sum_probs=35.7
Q ss_pred cccCCHHHHHHHHHHHHHhcC-CCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585 219 RRSWSPELHRRFLHALQQLGG-SHAATPKQIRELMNVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LGG-~~~AtPK~IlelM~V~gLT~~~VkSHLQKY 269 (387)
|-.||+|-...++++|+++|. -. ..|-..| +|=|..+++.|-+.|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRW----SVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCH----HHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChH----HHHHHHc--CCCCHHHHHHHHHHH
Confidence 347999999999999999993 23 5676665 577999999877665
No 24
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=71.04 E-value=6.7 Score=30.05 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=33.6
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhh
Q 016585 215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHL 266 (387)
Q Consensus 215 ~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHL 266 (387)
.|+..-.||+|-|+.|.+|+...|= + =..|...| |++-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-D---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-C---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCCHHHHHHHH
Confidence 4566668999999999999999992 2 24444411 5667888877654
No 25
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=67.97 E-value=11 Score=29.73 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCChHHHHhHh-cCCCCCHHHHHHhhhhh
Q 016585 221 SWSPELHRRFLHALQQLGGSHAATPKQIRELM-NVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 221 ~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM-~V~gLT~~~VkSHLQKY 269 (387)
.||.+-+++|..|+..++ ..+|-.-..+- -|+|=|.++|..|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 599999999999999987 34676433322 25778999999876655
No 26
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.58 E-value=13 Score=27.53 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=38.7
Q ss_pred CcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhh
Q 016585 218 QRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLH 272 (387)
Q Consensus 218 ~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~ 272 (387)
.+-.||+|=..+++++|+.+|.-+ ..|-++|+ =|-.+|+.|-+.|-..
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W----~~Ia~~~g---Rt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQW----RTIAPIIG---RTAAQCLEHYEFLLDK 55 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCH----HHHHHHHS---SCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCH----HHHhcccC---cCHHHHHHHHHHHhCh
Confidence 345799999999999999999533 77878664 6999999998887544
No 27
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=64.96 E-value=10 Score=30.84 Aligned_cols=48 Identities=27% Similarity=0.445 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCChH---HHHhHhcCCCCCHHHHHHhhhhhhhhc
Q 016585 221 SWSPELHRRFLHALQQLGGSHAATPK---QIRELMNVDGLTNDEVKSHLQKYRLHT 273 (387)
Q Consensus 221 ~WT~ELH~rFv~Av~~LGG~~~AtPK---~IlelM~V~gLT~~~VkSHLQKYRl~~ 273 (387)
.||.|=.+.|+.||..+|. -+|. .|-..| +|=|-.+|+.|-+++...+
T Consensus 10 ~WT~eEd~~L~~al~~~~~---~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDK---DTPDRWANVARAV--EGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHS--TTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 6999999999999999982 2554 465555 6889999999988876543
No 28
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=63.16 E-value=22 Score=26.71 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=44.6
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCCC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPS 277 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~~ 277 (387)
...++.|..+|++-.. .++.+.... ...+...+.+|...-|||..+|+-=.|.-|...+|..
T Consensus 15 ~~~rr~Rt~ft~~Ql~-~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLE-ILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHH-HHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHH-HHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 4567788888887433 344444433 3456677777777778999999999999999888754
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=62.88 E-value=13 Score=29.87 Aligned_cols=47 Identities=15% Similarity=0.358 Sum_probs=38.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhh
Q 016585 220 RSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLH 272 (387)
Q Consensus 220 l~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~ 272 (387)
-.||+|-...++.+|..+|.-. ..|-..| +|=|..+|+.|-..+...
T Consensus 54 ~~WT~eEd~~L~~~~~~~G~~W----~~Ia~~l--~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 54 DPWSPEEDMLLDQKYAEYGPKW----NKISKFL--KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCH----HHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCcCH----HHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence 4799999999999999999533 6777766 788999999987665444
No 30
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=62.63 E-value=22 Score=27.31 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=43.6
Q ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhc-CCCCCHHHHHHhhhhhhhhccCCC
Q 016585 216 RKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMN-VDGLTNDEVKSHLQKYRLHTRRPS 277 (387)
Q Consensus 216 rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~-V~gLT~~~VkSHLQKYRl~~rr~~ 277 (387)
.+.|-.||+|--...++.|+.+|-.+ +.|+.-.. .+|=|.-.|| -|||...+++.
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~~W----~~I~~~y~f~~~RT~VdLK---dk~r~L~k~~~ 60 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGNHW----NSILWSFPFQKGRRAVDLA---HKYHRLISGPS 60 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCSCH----HHHHHHSCCCTTCCHHHHH---HHHHHHHTCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhHhH----HHHHHhCCCccCcccchHH---HHHHHHHhccc
Confidence 34667899999999999999999544 88986444 4788999998 58888877753
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=60.53 E-value=11 Score=29.90 Aligned_cols=43 Identities=30% Similarity=0.579 Sum_probs=35.1
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhh
Q 016585 219 RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQ 267 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQ 267 (387)
+-.||+|-...++++|.++|.-. ..|-+. ++|=|..+|+.|-.
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W----~~Ia~~--l~gRt~~~~k~rw~ 98 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRW----AEIAKL--LPGRTDNAIKNHWN 98 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCH----HHHHTT--CTTCCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCH----HHHHHH--cCCCCHHHHHHHHH
Confidence 34799999999999999999543 567765 47889999998854
No 32
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=55.18 E-value=3.7 Score=32.82 Aligned_cols=45 Identities=29% Similarity=0.396 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCChHHHHhHh-cCCCCCHHHHHHhhhh
Q 016585 221 SWSPELHRRFLHALQQLGGSHAATPKQIRELM-NVDGLTNDEVKSHLQK 268 (387)
Q Consensus 221 ~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM-~V~gLT~~~VkSHLQK 268 (387)
.||.+-.+.|..||..++ +-+|.+-..+- -|+|=|.++|+.|-|-
T Consensus 22 ~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 599999999999999986 44665432222 2578899999999763
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=53.35 E-value=18 Score=29.84 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhh
Q 016585 221 SWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLH 272 (387)
Q Consensus 221 ~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~ 272 (387)
.||+|-...++++|..+|... ..|-+.| +|=|..+|+.|-..+...
T Consensus 64 ~WT~eEd~~L~~~v~~~G~~W----~~Ia~~l--~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 64 PWTAEEDALLVQKIQEYGRQW----AIIAKFF--PGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CCCHHHHHHHHHHHHHHCSCH----HHHHTTS--TTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCcCH----HHHHHHc--CCCCHHHHHHHHHHHHHh
Confidence 699999999999999999644 6777754 688999999886555444
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=52.07 E-value=16 Score=30.00 Aligned_cols=42 Identities=33% Similarity=0.582 Sum_probs=34.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhh
Q 016585 220 RSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQ 267 (387)
Q Consensus 220 l~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQ 267 (387)
-.||+|-...++++|.++|.-. ..|-+.| +|=|..+|+.|-.
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W----~~Ia~~l--~gRt~~~~k~r~~ 121 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRW----AEIAKLL--PGRTDNAVKNHWN 121 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCH----HHHGGGS--TTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCcCH----HHHHHHC--CCCCHHHHHHHHH
Confidence 4799999999999999999533 5677664 7889999998754
No 35
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=51.94 E-value=72 Score=24.00 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=46.1
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCCCCC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPA 279 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~~~~ 279 (387)
...++.|..+|.+-.. .++.+.... ...++..+.+|...-|||..+|+.=.|.-|...++....
T Consensus 5 ~~~rr~Rt~ft~~Q~~-~Le~~F~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 5 SSGRRERTTFTRAQLD-VLEALFAKT--RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCSSCCHHHHH-HHHHHHHHC--SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHH-HHHHHHHcc--CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 4577888899987444 344444433 356667777888888999999999999999887765443
No 36
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.88 E-value=75 Score=23.99 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=45.4
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCCCC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSP 278 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~~~ 278 (387)
...++.|..+|.+-......+++ .- .-.++..+.+|...-|||..+|+-=.|.-|...++...
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~-~~--~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFE-KQ--KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHH-HC--SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH-hc--CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 45678888899865443333333 33 34566777777777789999999999999999887653
No 37
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=51.46 E-value=28 Score=29.67 Aligned_cols=55 Identities=24% Similarity=0.363 Sum_probs=44.8
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhc--CCCCCHHHHHHhhhhhhhhcc
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMN--VDGLTNDEVKSHLQKYRLHTR 274 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~--V~gLT~~~VkSHLQKYRl~~r 274 (387)
...++.|..||+|--...+++|+.+| |-+ +.|+..+. .+|=|..++|. |||..++
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W----~~Ia~~~~~~f~~RT~v~lKd---RWrnllk 68 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRW----RDVKMRAFDNADHRTYVDLKD---KWKTLVH 68 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCH----HHHHHHHCSCCSSCCSHHHHH---HHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCH----HHHHHHhccccCCCCHHHHHH---HHHHHHh
Confidence 45788888999999999999999999 366 78998875 47889999985 4666655
No 38
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=50.69 E-value=26 Score=28.88 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=37.1
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585 215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 215 ~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKY 269 (387)
....|-.||+|--.+++.+|+++|.- =+.|-+.| +|=|..++..+-..|
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~~----W~~Ia~~~--~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGSD----WKMIAATF--PNRNARQCRDRWKNY 55 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTTC----HHHHHHTC--TTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHc--CCCCHHHHHHHHhhh
Confidence 44556689999999999999999952 37777765 466888887665554
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=55.58 E-value=3.4 Score=32.87 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhh
Q 016585 221 SWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRL 271 (387)
Q Consensus 221 ~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl 271 (387)
.||+|-...|+++|..+|--+ ..|-..| +|=|..+|+.|-+.|..
T Consensus 18 ~WT~eEd~~l~~~~~~~G~~W----~~IA~~l--~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 18 GWTEEEMGTAKKGLLEHGRNW----SAIARMV--GSKTVSQCKNFYFNYKK 62 (89)
Confidence 799999999999999999433 4565554 67899999988776643
No 40
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=48.96 E-value=24 Score=27.83 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=35.8
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585 219 RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKY 269 (387)
+-.||+|-..+++.+|+.+|.. .=+.|-+.| +|=|..+|..|-++|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 3479999999999999999941 125677776 678999998776655
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=46.81 E-value=27 Score=28.91 Aligned_cols=43 Identities=23% Similarity=0.509 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585 221 SWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 221 ~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKY 269 (387)
.||+|-...++++|..+|.-. ..|-.+| +|=|..+|+.|-..|
T Consensus 56 ~Wt~eEd~~L~~~~~~~G~~W----~~Ia~~l--~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 56 AWTPEEDETIFRNYLKLGSKW----SVIAKLI--PGRTDNAIKNRWNSS 98 (131)
T ss_dssp CCCHHHHHHHHHHHHHSCSCH----HHHTTTS--TTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCcCH----HHHHHHc--CCCCHHHHHHHHHHH
Confidence 699999999999999999644 6676654 688999999885544
No 42
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=45.59 E-value=40 Score=26.16 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=36.0
Q ss_pred CcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhh
Q 016585 218 QRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQ 267 (387)
Q Consensus 218 ~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQ 267 (387)
.|-.||+|--+.++++|.++|--+ ..|-..| |=|-.+|+.+-.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~kW----~~IA~~l---gRt~~q~knRw~ 64 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGNDW----ATIGAAL---GRSASSVKDRCR 64 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSCH----HHHHHHH---TSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCH----HHHHHHh---CCCHHHHHHHHH
Confidence 345899999999999999999444 7888888 779999998754
No 43
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=42.41 E-value=13 Score=28.44 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=17.2
Q ss_pred ChHHHHhHhcCCCCCHHHHHHhhhhhhhhccC
Q 016585 244 TPKQIRELMNVDGLTNDEVKSHLQKYRLHTRR 275 (387)
Q Consensus 244 tPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr 275 (387)
+-+.|-+.||+ +...|++||.+-|..+++
T Consensus 55 s~~eIA~~lgi---s~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 55 STAQIATDLGI---AEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp CHHHHHHHHTS---CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHHHHH
Confidence 44444455544 566677777777666553
No 44
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=41.72 E-value=40 Score=28.58 Aligned_cols=43 Identities=30% Similarity=0.579 Sum_probs=35.6
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhh
Q 016585 219 RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQ 267 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQ 267 (387)
+-.||+|-...+++++.++|.-. ..|-.. ++|=|..+|+.|-.
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~~W----~~Ia~~--l~gRt~~~~knr~~ 152 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGNRW----AEIAKL--LPGRTDNAIKNHWN 152 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCH----HHHHTT--STTCCHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHCCCH----HHHHHH--CCCCCHHHHHHHHH
Confidence 45799999999999999999533 677775 47899999998854
No 45
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=41.66 E-value=46 Score=23.79 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCC
Q 016585 228 RRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP 276 (387)
Q Consensus 228 ~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~ 276 (387)
+..+.....|+|.+.-+-+.|-+.||+ +...|+.|+.+-+..++..
T Consensus 11 r~il~l~~~l~~~~g~s~~eIA~~lgi---s~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 11 AKVLRMRFGIDMNTDYTLEEVGKQFDV---TRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp HHHHHHHTTTTSSSCCCHHHHHHHHTC---CHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHHHH
Confidence 333444444444577888999999987 8999999999888887754
No 46
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.08 E-value=1.1e+02 Score=22.43 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=45.7
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCCCC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSP 278 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~~~ 278 (387)
...++.|...|++-... ++.+...- .-.++..+.+|...-|||..+|+-=.|.-|...++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~-Le~~F~~~--~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRE-LEREYAAN--KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHH-HHHHHHHC--SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhc--CCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 44678888899874443 33333333 34566777788788889999999999999998887553
No 47
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=40.03 E-value=47 Score=26.49 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=33.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhh
Q 016585 220 RSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQK 268 (387)
Q Consensus 220 l~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQK 268 (387)
-.||+|--.+++.+|+.+|.. .=..|-+.|+ |=|..++..+-..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~--~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMI--TRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTT--TSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcC--CCCHHHHHHHHHH
Confidence 479999999999999999941 2367777774 6788888765443
No 48
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=39.48 E-value=51 Score=26.11 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhc--CCCCCHHHHHHhhhhhhhhcc
Q 016585 221 SWSPELHRRFLHALQQLG-GSHAATPKQIRELMN--VDGLTNDEVKSHLQKYRLHTR 274 (387)
Q Consensus 221 ~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~--V~gLT~~~VkSHLQKYRl~~r 274 (387)
.||+|-...++++|+.+| |-. +.|+.... ++|=|..+||.+ ||..++
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W----~~I~~~~~~~~~~RT~~~lKdr---Wrnllk 51 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRW----RDVKMRAFDNADHRTYVDLKDK---WKTLVH 51 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCH----HHHHHHHCTTCTTSCHHHHHHH---HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCc----HHHHHhhccccCCCCHHHHHHH---HHHHHH
Confidence 599999999999999999 355 78887633 578899999954 555554
No 49
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=38.73 E-value=52 Score=27.35 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=25.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhcccchh--hHHHHHHHHHHHH
Q 016585 1 MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPL--CLELVTQAIQACR 46 (387)
Q Consensus 1 ~~~~~k~~k~~d~v~~LEEErrKIevFkRELPL--Cm~Ll~~aIe~~K 46 (387)
+.|-+.+.+|++.|++||. -+||| .|.|...+|+.+|
T Consensus 30 ~sFEeal~eLEeIV~~LE~---------gel~LEesl~lyeeG~~L~k 68 (100)
T 1vp7_A 30 QDFETALAELESLVSAMEN---------GTLPLEQSLSAYRRGVELAR 68 (100)
T ss_dssp CSHHHHHHHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHHHH
Confidence 4688888899999988885 45555 4555555555443
No 50
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=38.44 E-value=60 Score=26.56 Aligned_cols=45 Identities=16% Similarity=0.395 Sum_probs=35.4
Q ss_pred cccCCHHHHHHHHHHHHHhcC-CCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585 219 RRSWSPELHRRFLHALQQLGG-SHAATPKQIRELMNVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LGG-~~~AtPK~IlelM~V~gLT~~~VkSHLQKY 269 (387)
+-.||+|--.+++++|+.+|. -. ..|-+.| +|=|..+++.|-..|
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W----~~Ia~~l--~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRW----SDIAKHL--KGRIGKQCRERWHNH 72 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCH----HHHHHHS--SSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCH----HHHHHHh--cCCcHHHHHHHHHHh
Confidence 457999999999999999993 23 6777776 577889988766554
No 51
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=36.68 E-value=41 Score=25.69 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhh
Q 016585 222 WSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYR 270 (387)
Q Consensus 222 WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYR 270 (387)
=++++.++.+.++..+|--+..|.+.|-+.++| ++..|..||.+-.
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~ 56 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHH
Confidence 367788889999999994356888999999997 6788988887653
No 52
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.36 E-value=1.2e+02 Score=22.15 Aligned_cols=63 Identities=25% Similarity=0.218 Sum_probs=45.7
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCCCC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSP 278 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~~~ 278 (387)
...++.|...|.+-.. .++.+.+.- .-.+...+.+|...-|||..+|+-=.|.-|...++..+
T Consensus 5 ~~~rr~Rt~ft~~Q~~-~Le~~F~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLA-ALQRRFQKT--QYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHH-HHHHHHTTC--SSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHH-HHHHHHcCC--CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 3567888889987444 344443332 34566777778778899999999999999999887654
No 53
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=34.50 E-value=60 Score=23.34 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHHHH
Q 016585 9 RCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACR 46 (387)
Q Consensus 9 k~~d~v~~LEEErrKIevFkRELPLCm~Ll~~aIe~~K 46 (387)
.-+.||-.|=-|+-+++- =+.=||+||++-|+.+.
T Consensus 5 ~~~kyLpeL~aEk~sLdP---sf~Ha~RLl~~EIek~q 39 (41)
T 2xa6_A 5 PENKYLPELMAEKDSLDP---SFTHAMQLLTAEIEKIQ 39 (41)
T ss_dssp CHHHHHHHHHHHHHHSCT---TCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCc---hHHHHHHHHHHHHHHHH
Confidence 456899999999999986 67789999999999875
No 54
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=34.43 E-value=34 Score=22.43 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 016585 7 MQRCHEYVEALEEEKRKIQV 26 (387)
Q Consensus 7 ~~k~~d~v~~LEEErrKIev 26 (387)
..||+.-|.+||.|-.|++.
T Consensus 3 vykldanvkrlekevgkleg 22 (28)
T 4dac_A 3 VYKLDANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccccHHHHHHHHhhhhh
Confidence 56899999999999999874
No 55
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=33.71 E-value=73 Score=24.03 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCC
Q 016585 228 RRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP 276 (387)
Q Consensus 228 ~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~ 276 (387)
+..+.....|+|-+.-+-+.|-+.||+ +...|++|+.+-+..++..
T Consensus 24 r~vl~l~~~l~~~~~~s~~EIA~~lgi---s~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 24 AMVLRMRYGLLDGKPKTLEEVGQYFNV---TRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp HHHHHHHHTTTTSSCCCHHHHHHHHTC---CHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHHHHHH
Confidence 333444444555567888999999987 8999999999888887763
No 56
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=32.78 E-value=14 Score=31.15 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCh----HHHHhHhcCCCCCHHHHHHhhhhhhhh
Q 016585 225 ELHRRFLHALQQLGGSHAATP----KQIRELMNVDGLTNDEVKSHLQKYRLH 272 (387)
Q Consensus 225 ELH~rFv~Av~~LGG~~~AtP----K~IlelM~V~gLT~~~VkSHLQKYRl~ 272 (387)
+|++.|.. |..+||.++.+- +.|.+.|+++. -..++.|=.||=+.
T Consensus 49 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 49 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 97 (123)
T ss_dssp CTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHH
Confidence 57777765 788999887766 45889999987 66777766665444
No 57
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.07 E-value=99 Score=22.62 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=44.0
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCCC
Q 016585 214 PQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPS 277 (387)
Q Consensus 214 ~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~~ 277 (387)
..++.|.++|.+-......++ ..- .-.+...+.+|...-|||..+|+-=.|.-|...++..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F-~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKF-ETQ--KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHH-HHC--SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHH-HcC--CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 467788899987444433333 333 3466677788888889999999999999988877643
No 58
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.97 E-value=1.1e+02 Score=22.22 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=45.0
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCCCC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSP 278 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~~~ 278 (387)
...++.|..+|.+-......+++. - .-.++..+.+|...-|||..+|+.=.|.-|...++..+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~-~--~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQE-T--KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHH-C--SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc-c--CCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 346788888998854444444333 2 34566777777777789999999999999988776543
No 59
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=30.88 E-value=1.8e+02 Score=22.23 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=43.9
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRR 275 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr 275 (387)
...++.|-..|.+--.......+.+| -....+...+.+|...-||+..+|+-=.|.-|...++
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 45677788888875554444445544 0133555667777777799999999999998887665
No 60
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.34 E-value=1.1e+02 Score=22.76 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=43.6
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP 276 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~ 276 (387)
...++.|...|++--. .++.+...- ...++..+.+|...-|||..+|+-=.|.-|...++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~-~Le~~F~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLR-TMKSYFAIN--HNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCCCHHHHH-HHHHHHHHC--SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHH-HHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 3467888899987443 344444433 356677788888888999999999998888776653
No 61
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.42 E-value=86 Score=22.63 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhcc
Q 016585 225 ELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTR 274 (387)
Q Consensus 225 ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~r 274 (387)
+-.+..+.....|+|-+.-+-+.|-+.||+ +...|+.|+.+-+..++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l~i---s~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYFGV---TRERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHHHH
Confidence 334444555555655567888999999987 89999999988877777
No 62
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=29.13 E-value=89 Score=26.42 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=35.8
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585 219 RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKY 269 (387)
+-.||+|-...++.+|+.+|.. .=..|-..| +|=|..+|+.+-..|
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 103 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTS--TTCCHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHhCcc---cHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 4479999999999999999931 125677766 678999999776554
No 63
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=28.26 E-value=51 Score=27.26 Aligned_cols=43 Identities=5% Similarity=0.108 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585 221 SWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKY 269 (387)
Q Consensus 221 ~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKY 269 (387)
.||+|--.+.+.+|+.+| +-. +.|-+.| +|=|..++.-|-+.|
T Consensus 4 ~Wt~eED~~L~~~v~~~g~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKENGPQNW----PRITSFL--PNRSPKQCRERWFNH 47 (131)
T ss_dssp SCCHHHHHHHHHHHHHHCSCCG----GGGTTSC--TTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCCH----HHHHHHH--CCCCHHHHHHHHhhc
Confidence 699999999999999999 333 4454444 566777776655544
No 64
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=27.89 E-value=92 Score=27.28 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHh
Q 016585 4 AEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRREL 49 (387)
Q Consensus 4 ~~k~~k~~d~v~~LEEErrKIevFkRELPLCm~Ll~~aIe~~K~el 49 (387)
.+-...|.||+.+|+.|...=... +++|.+++..+++++
T Consensus 78 eeA~~~L~eYn~rL~~E~~dR~~L-------~~~L~~~~~~~~~~l 116 (152)
T 4fla_A 78 DEACLLLAEYNGRLAAELEDRRQL-------ARMLVEYTQNQKDVL 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 344568999999999987654444 455555555555544
No 65
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=27.22 E-value=1.2e+02 Score=23.13 Aligned_cols=64 Identities=8% Similarity=0.015 Sum_probs=44.9
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP 276 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~ 276 (387)
...+|.|...|.+--......+...---.-.++....+|...-|||..+|+.=.|..|...++.
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 3467888888887555444444432111345667777788888999999999999999887653
No 66
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=26.97 E-value=1.6e+02 Score=21.32 Aligned_cols=62 Identities=16% Similarity=0.334 Sum_probs=43.2
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCCC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPS 277 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~~ 277 (387)
...++.|...|++-... ++.+.... .-.++..+.+|...-|||..+|+.=.|.-|...++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~-Le~~F~~~--~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRV-LRQYFDIN--NSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHH-HHHHHHHC--SSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHH-HHHHHHHC--CCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 35678888899875443 33333333 3445556666766678899999999999998877754
No 67
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=26.02 E-value=38 Score=27.22 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=29.4
Q ss_pred CCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHH
Q 016585 217 KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVK 263 (387)
Q Consensus 217 K~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~Vk 263 (387)
+..-.||+|=|+.|.+++.+.|-- -..|.+.| ++=|..++-
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l--~~Kt~~~cV 81 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKN----FGLIASFL--ERKTVAECV 81 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTC----HHHHHHTC--TTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCC----HHHHHHHc--CCCCHHHHH
Confidence 455689999999999999999922 36675554 444555544
No 68
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=25.04 E-value=1.7e+02 Score=21.55 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=45.3
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCCCCCC
Q 016585 214 PQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAM 280 (387)
Q Consensus 214 ~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~~~~~ 280 (387)
..++.|..+|++-.. .++...... .-.++..+.+|-..-|||..+|+-=.|.-|...++.....
T Consensus 6 ~~rr~Rt~ft~~Q~~-~Le~~F~~~--~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLK-ELEREYATN--KFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp CCCCCCCCSCHHHHH-HHHHHHHHT--SCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCHHHHH-HHHHHHhhC--CCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 467788888987433 334443333 3456677777777778999999999999999888765443
No 69
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=24.86 E-value=1.8e+02 Score=20.70 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=40.8
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccC
Q 016585 215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRR 275 (387)
Q Consensus 215 ~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr 275 (387)
.++.|...|.+--......+...-...-.++..+.+|...-|||..+|+-=.|.-|...+|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 4566777777644333333322121234566777788888899999999999999887765
No 70
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=24.61 E-value=1e+02 Score=25.26 Aligned_cols=50 Identities=22% Similarity=0.448 Sum_probs=40.7
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhh
Q 016585 219 RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLH 272 (387)
Q Consensus 219 Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~ 272 (387)
+..|-...-++.++.+..-| ..+|..|-+.+++ |+|+..|..||++-...
T Consensus 7 ~~~~md~~d~~IL~~L~~~g---~~s~~eLA~~l~~-giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEG---NGSPKELEDRDEI-RISKSSVSRRLKKLADH 56 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHS---CBCHHHHHTSTTC-CSCHHHHHHHHHHHHHT
T ss_pred hhhhcCHHHHHHHHHHHHcC---CCCHHHHHHHHhc-CCCHHHHHHHHHHHHHC
Confidence 35788888999999998877 6899999886622 56999999999987664
No 71
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.03 E-value=1.2e+02 Score=18.83 Aligned_cols=41 Identities=5% Similarity=-0.069 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhh
Q 016585 223 SPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRL 271 (387)
Q Consensus 223 T~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl 271 (387)
+++....++..+. . ..+-+.|-+.|+| +..-|..+|..|+.
T Consensus 7 ~~~~~~~i~~~~~--~---g~s~~~IA~~lgi---s~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 7 SDTERAQLDVMKL--L---NVSLHEMSRKISR---SRHCIRVYLKDPVS 47 (51)
T ss_dssp CHHHHHHHHHHHH--T---TCCHHHHHHHHTC---CHHHHHHHHHCSTT
T ss_pred CHHHHHHHHHHHH--c---CCCHHHHHHHHCc---CHHHHHHHHhhHHh
Confidence 5555555554431 2 2467888888887 78889999988864
No 72
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.31 E-value=20 Score=29.61 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCh----HHHHhHhcCCCCCHHHHHHhhhhhh
Q 016585 224 PELHRRFLHALQQLGGSHAATP----KQIRELMNVDGLTNDEVKSHLQKYR 270 (387)
Q Consensus 224 ~ELH~rFv~Av~~LGG~~~AtP----K~IlelM~V~gLT~~~VkSHLQKYR 270 (387)
-+|++.|.. |..+||.++.+- +.|.+.|+++. -..++.|=.||=
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L 96 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRIL 96 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHH
Confidence 368887865 788999876554 56889999987 456777666553
No 73
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.88 E-value=1.2e+02 Score=25.57 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHhcc
Q 016585 9 RCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSG 51 (387)
Q Consensus 9 k~~d~v~~LEEErrKIevFkRELPLCm~Ll~~aIe~~K~el~~ 51 (387)
.|++.+.+||+|-+......++..--++=|..-|+.|+.|-..
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~ 83 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQ 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 6788889999999888877777766667778888888877554
No 74
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=21.86 E-value=1.3e+02 Score=24.66 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=27.7
Q ss_pred CCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCCCC
Q 016585 241 HAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSP 278 (387)
Q Consensus 241 ~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~~~ 278 (387)
+.-+.+.|-+.||+ +...|++||.+-|..+++...
T Consensus 108 ~g~s~~EIA~~lgi---s~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 108 EGFSPEDAAYLIEV---DTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp SCCCHHHHHHTTTS---CHHHHHHHHHHHHHHHHTTSS
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888876 788899999999998887553
No 75
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.73 E-value=1.8e+02 Score=20.73 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=24.3
Q ss_pred CCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccC
Q 016585 241 HAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRR 275 (387)
Q Consensus 241 ~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr 275 (387)
+.-+.+.|-+.|++ +...|+.|+.+-+.+++.
T Consensus 30 ~g~s~~eIA~~l~i---s~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 30 AGLPNKSIAYDLDI---SPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp TTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHcC
Confidence 44677888888876 788899998887777654
No 76
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=21.16 E-value=2.6e+02 Score=20.87 Aligned_cols=62 Identities=24% Similarity=0.257 Sum_probs=43.8
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCC
Q 016585 212 GQPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP 276 (387)
Q Consensus 212 ~~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~ 276 (387)
....++.|-.+|.+-... ++.+.... ...+...+.+|...-|||..+|+-=.|.-|...+|.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~-Le~~F~~~--~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCV-LNDRFQRQ--KYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSCSCCCSSCCCHHHHHH-HHHHHHHS--SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCCCHHHHHH-HHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 345677888888874333 33333333 345667777777778899999999999999887764
No 77
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=20.80 E-value=90 Score=29.31 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh-----hhcccchhh-HHHHHHHHHHHHHHhcc
Q 016585 3 YAEKMQRCHEYVEALEEEKRKIQ-----VFQRELPLC-LELVTQAIQACRRELSG 51 (387)
Q Consensus 3 ~~~k~~k~~d~v~~LEEErrKIe-----vFkRELPLC-m~Ll~~aIe~~K~el~~ 51 (387)
|.+.|-.+-+.++.|||+|-..= .|.+-|.++ -.-+.+..+.+++-++.
T Consensus 220 y~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~~~~~~~~~~~~~~~e~~~~~i~~ 274 (320)
T 3m3w_A 220 YMEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSSDKFHELHRDLQQSIEA 274 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHh
Confidence 55667778888899999986542 344445544 24445555666666654
No 78
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=20.28 E-value=80 Score=24.02 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 016585 7 MQRCHEYVEALEEEKRKIQVF 27 (387)
Q Consensus 7 ~~k~~d~v~~LEEErrKIevF 27 (387)
...|++..+.|++||+|.|..
T Consensus 30 ~~~Lee~t~~L~~EK~ktd~L 50 (66)
T 3hls_A 30 TDRLQLTLRALEDEKKKTDTL 50 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999998753
No 79
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.11 E-value=2.1e+02 Score=21.46 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=42.5
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccC
Q 016585 213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRR 275 (387)
Q Consensus 213 ~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr 275 (387)
...++.|...|.+-.. .++.+...- .-.++..+.+|-..-|||..+|+-=.|.-|...++
T Consensus 5 ~~~rr~Rt~ft~~Q~~-~Le~~F~~~--~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 64 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIE-ALEKEFERT--HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 64 (80)
T ss_dssp CSSCCCCCCSCHHHHH-HHHHHHTTC--SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHH-HHHHHHhcc--CCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHH
Confidence 3467888889987443 344444333 34566777777777889999999999988887654
No 80
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=20.01 E-value=26 Score=27.60 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCh----HHHHhHhcCCCCC--HHHHHHhhhhh
Q 016585 225 ELHRRFLHALQQLGGSHAATP----KQIRELMNVDGLT--NDEVKSHLQKY 269 (387)
Q Consensus 225 ELH~rFv~Av~~LGG~~~AtP----K~IlelM~V~gLT--~~~VkSHLQKY 269 (387)
+|++.|.. |..+||.++.+- +.|.+.|+++.-+ -.+++.|=.||
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 67888875 778899876554 4588999986533 22344444444
Done!