Query 016586
Match_columns 387
No_of_seqs 288 out of 766
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2480 3-hydroxy-3-methylglut 100.0 3E-102 6E-107 790.2 25.8 355 24-378 42-423 (602)
2 cd00643 HMG-CoA_reductase_clas 100.0 8.9E-74 1.9E-78 574.4 23.3 239 137-377 1-247 (403)
3 TIGR00920 2A060605 3-hydroxy-3 100.0 1.2E-73 2.6E-78 609.8 23.9 246 133-378 458-709 (886)
4 TIGR00533 HMG_CoA_R_NADP 3-hyd 100.0 2.6E-71 5.6E-76 556.7 24.0 231 134-367 1-238 (402)
5 COG1257 HMG1 Hydroxymethylglut 100.0 3.9E-68 8.4E-73 535.5 17.6 237 139-376 2-246 (436)
6 PF00368 HMG-CoA_red: Hydroxym 100.0 2.5E-65 5.4E-70 510.2 19.0 215 161-377 1-221 (373)
7 cd00644 HMG-CoA_reductase_clas 100.0 1.7E-62 3.7E-67 495.2 18.9 207 159-369 3-221 (417)
8 TIGR00532 HMG_CoA_R_NAD hydrox 100.0 5.5E-61 1.2E-65 481.3 19.7 223 144-371 3-238 (393)
9 cd00365 HMG-CoA_reductase Hydr 100.0 1.3E-58 2.8E-63 462.2 20.9 213 151-369 1-220 (376)
10 PF14150 YesK: YesK-like prote 74.7 3.4 7.3E-05 34.5 3.2 57 35-95 1-58 (81)
11 PF11947 DUF3464: Protein of u 72.1 8.7 0.00019 35.5 5.5 70 26-115 46-129 (153)
12 PRK09509 fieF ferrous iron eff 71.4 16 0.00035 35.8 7.6 68 283-350 213-280 (299)
13 TIGR01297 CDF cation diffusion 60.4 63 0.0014 30.4 9.0 66 283-348 192-258 (268)
14 PF14715 FixP_N: N-terminal do 58.4 12 0.00025 28.7 3.0 25 31-55 18-42 (51)
15 PF14012 DUF4229: Protein of u 53.7 20 0.00043 28.7 3.8 30 33-62 30-59 (69)
16 PF01545 Cation_efflux: Cation 47.3 1.1E+02 0.0024 28.9 8.4 66 284-349 206-272 (284)
17 COG0053 MMT1 Predicted Co/Zn/C 45.1 98 0.0021 31.0 8.0 78 282-359 214-291 (304)
18 COG1862 YajC Preprotein transl 41.6 21 0.00046 30.6 2.4 27 34-60 6-32 (97)
19 PRK13454 F0F1 ATP synthase sub 38.9 29 0.00064 32.0 3.0 21 36-56 30-50 (181)
20 COG5548 Small integral membran 38.0 46 0.00099 29.0 3.8 48 36-99 30-77 (105)
21 PF09551 Spore_II_R: Stage II 37.7 69 0.0015 28.9 5.0 58 267-328 38-112 (130)
22 PF09580 Spore_YhcN_YlaJ: Spor 37.6 2.5E+02 0.0054 25.1 8.7 70 284-357 73-142 (177)
23 PF01578 Cytochrom_C_asm: Cyto 37.5 67 0.0015 29.6 5.2 50 39-99 162-211 (214)
24 TIGR03063 srtB_target sortase 36.1 37 0.00081 23.4 2.4 26 25-56 2-27 (29)
25 PF07045 DUF1330: Protein of u 35.5 33 0.00071 26.4 2.3 43 237-282 17-59 (65)
26 PF11360 DUF3110: Protein of u 34.0 57 0.0012 27.3 3.7 34 245-281 11-44 (86)
27 PF13858 DUF4199: Protein of u 33.7 1.4E+02 0.0031 26.1 6.4 49 39-91 34-85 (163)
28 TIGR00782 ccoP cytochrome c ox 33.0 39 0.00084 33.2 3.0 25 31-55 24-48 (285)
29 TIGR02837 spore_II_R stage II 29.1 91 0.002 29.4 4.5 56 269-328 75-147 (168)
30 PF07074 TRAP-gamma: Transloco 29.1 36 0.00079 32.1 1.9 49 27-82 117-167 (170)
31 PF11834 DUF3354: Domain of un 27.9 1.4E+02 0.0031 24.1 4.9 34 282-315 25-68 (69)
32 PRK13108 prolipoprotein diacyl 27.1 1.2E+02 0.0027 32.4 5.7 43 46-88 228-272 (460)
33 PF06129 Chordopox_G3: Chordop 25.7 57 0.0012 28.8 2.4 21 36-56 2-22 (109)
34 TIGR02206 intg_mem_TP0381 cons 24.9 1.4E+02 0.0031 28.5 5.2 41 60-102 63-109 (222)
35 PRK14645 hypothetical protein; 23.3 5.8E+02 0.013 23.4 8.8 60 283-342 6-69 (154)
36 PF09531 Ndc1_Nup: Nucleoporin 21.5 78 0.0017 34.1 3.0 26 34-62 140-165 (602)
37 TIGR00739 yajC preprotein tran 20.5 75 0.0016 26.3 2.1 22 37-58 3-24 (84)
No 1
>KOG2480 consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase [Lipid transport and metabolism]
Probab=100.00 E-value=3e-102 Score=790.25 Aligned_cols=355 Identities=55% Similarity=0.824 Sum_probs=328.1
Q ss_pred CCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHhH--hhhhcCCCccccchHHHHHHHHH-HHHHHHHHhhcCccccccc
Q 016586 24 TPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWR--EKIRNSTPLHVVTLSEIAAIVSL-IASFIYLLGFFGIDFVQSF 100 (387)
Q Consensus 24 ~~~~~~~lplp~~~~n~~~~~~f~~~~~~l~~~wr--~kir~s~plh~~~~~e~~~~~~~-~as~~yl~~ffgi~~~~~~ 100 (387)
..++++.+|||+|+++..|+.|||+++|+++++|+ +|+|.|+|||++++++..+.... |++++|+++|++|+++|++
T Consensus 42 ~~~~~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (602)
T KOG2480|consen 42 VCKASKYLPLSLYLTIESPVLLLLSVVYIGFENWRLADKIRISTPLHVVDLSELAAHIGESIAENIDLLNFAKIDLIKSV 121 (602)
T ss_pred cchhhhhcccchHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccCceeEEEccchhcceehhhhhhhhhhccccccchhhc
Confidence 45789999999999999999999999999999999 99999999999999999998888 9999999999999999999
Q ss_pred cCCCCCccCCcccCCCc----cc--cCCCCC-c---------cccc-CCCCCHHHHHHHHHcCCCCccccccccCChHHH
Q 016586 101 ISRATPEAWDLEEDDSD----II--SRPPAP-I---------SITT-LSSAQDEDVVQSVIDGSIPSYALESKLGDCRRA 163 (387)
Q Consensus 101 ~~~~~~~~~~~~~~~~~----~~--~~~~~~-~---------~~~~-~~~~~deei~~~v~~g~i~~y~LE~~l~d~~rA 163 (387)
+++...+.|..+..-.+ .. +.++.| . +... .-+.+|+||++.|..|++|+|+||++|+|++||
T Consensus 122 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~l~~~~~~~~~g~~~~~~~d~Eiv~lv~~G~~p~y~lEs~l~d~~Ra 201 (602)
T KOG2480|consen 122 ISDDDVESWVTDRTILCVSGRLVTFPSIPKPIRPLLEILNLFPSGQEVKSLSDEEIVQLVIAGKIPLYALESKLGDAERA 201 (602)
T ss_pred cccccccccccccccccCCCcccccCCCCCCccchhhhcccCccccccccCChHHHHHHhhcCcccceeccccccchhhh
Confidence 98887778876544211 11 222211 1 0111 245689999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCccC---CCCCCCCChhhhhhcccccceEEeeeceeeecceEEcCeEEeeeccccchhHHHHhhhhh
Q 016586 164 AAIRREALQKMTGRSLQ---GLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGC 240 (387)
Q Consensus 164 v~iRR~~l~~~tg~sL~---~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGVAGPLlInG~ey~VPMATtEgsLVASanRGa 240 (387)
+.+||++|.+.++.+.. .||+++|||+.+.|+||||+|||+||||||||||+|||++|||||||||||||||+||||
T Consensus 202 v~iRR~~l~~~~~~~~~~~~~lP~~~yDY~~Vl~aCCENvIGY~piPVGVaGPLlldG~~y~VPMATTEGaLVAStnRGc 281 (602)
T KOG2480|consen 202 VSIRRTALSRNAREPTGTSDKLPYEGYDYSRVLGACCENVIGYMPIPVGVAGPLLLDGTEYYVPMATTEGALVASTNRGC 281 (602)
T ss_pred HHHHHHHHHHhhcCcccccccCCccCcCHHHHHHHhhhccccceecccccccceEECCeEEEeeeccccchhhHhhccch
Confidence 99999999999998776 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhhcCCcceeeEEEEecCCeEEEEEEee
Q 016586 241 KAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCT 320 (387)
Q Consensus 241 KaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~van~tSR~GgL~~I~~~i~G~~l~lrf~~d 320 (387)
|+|+.+||+++++.+|||||+|++||+++.||.++|.||+.||||+.|+++||++|||+|||+|++.++|+++|+||...
T Consensus 282 KaI~a~GGa~sv~~~dGMTRgPvVRFps~~rA~~~k~WLe~~E~~~~lk~~FnstSRFaRLq~i~~~iaG~~lyiRF~~~ 361 (602)
T KOG2480|consen 282 KAINAGGGATSVLEKDGMTRGPVVRFPSARRAAEAKIWLESPENQEVLKKAFNSTSRFARLQSIHTTIAGRNLYIRFCTS 361 (602)
T ss_pred hheecCCCeeEEEeecCccccceeecchHHHHHHHHHHhcChhhHHHHHHHhcccchhhhhheeeEEeecceeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCccccccce----eEEEeeeeeeeeh
Q 016586 321 TGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSC----SYILLSVTNEIWL 378 (387)
Q Consensus 321 TGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ctDrl~~A----~~~~~~v~~e~~~ 378 (387)
||||||||||+|++|+++.+|.++||||+|++||||||||+++.| +=|+.||-.|+-|
T Consensus 362 TGDAMGMNMISKgve~~l~~l~~~fpdM~vi~iSGNyCtDKKpAAiNWieGRGKsVV~Ea~I 423 (602)
T KOG2480|consen 362 TGDAMGMNMISKGVENALRFLSEEFPDMQVISISGNYCTDKKPAAINWIEGRGKSVVAEATI 423 (602)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhCCCceEEEeccCcccCCchHhhhhhccCCceEEEEEec
Confidence 999999999999999999999999999999999999999999987 4578899888866
No 2
>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture.
Probab=100.00 E-value=8.9e-74 Score=574.42 Aligned_cols=239 Identities=51% Similarity=0.780 Sum_probs=229.3
Q ss_pred HHHHHHHHcCCCCccccccccCChHHHHHHHHHHHHHHhCCccCCCCCCCCChhhhhhcccccceEEeeeceeeecceEE
Q 016586 137 EDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLL 216 (387)
Q Consensus 137 eei~~~v~~g~i~~y~LE~~l~d~~rAv~iRR~~l~~~tg~sL~~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGVAGPLlI 216 (387)
+||++++.+|++++|+||+.+.|++||+.+||+++++.+|.+++++|++++||+++.++||||+||++|||+||||||+|
T Consensus 1 ~ei~~~~~~~~~~~~~le~~~~~~~~a~~~Rr~~~~~~~~~~l~~~~~~~~d~~~~~~~~iEN~IG~~~vPlGvAgpl~I 80 (403)
T cd00643 1 EEIIDLLSAGHIKLYKLEKSLEDAERAVRIRRLYLEKSTGKSLEHLPYTTYDYSEVLGRNIENVIGYVQVPVGVAGPLLI 80 (403)
T ss_pred ChHHHhhhcCCCCchhccccccChHHHHHHHHHHHHhccccccccCCCCCcCHHHHhccccccceeeEeeceEEecceEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c----CeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHHHH
Q 016586 217 D----GFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVF 292 (387)
Q Consensus 217 n----G~ey~VPMATtEgsLVASanRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~va 292 (387)
| |++|+|||||||||||||+|||||+++.+||+++.+++|+|||+|+|+|+++.+|.++++|+++ |+++|+++|
T Consensus 81 nG~~a~~~~~VPmATtEgslVAS~srGak~i~~~GG~~~~v~~~~Mtrap~~~~~~~~~a~~~~~wi~~--~~~~i~~~a 158 (403)
T cd00643 81 NGEYAGGEFYVPMATTEGALVASTNRGCKAINLSGGATTRVLGDGMTRAPVFRFPSAREAAEFKAWIEE--NFEAIKEVA 158 (403)
T ss_pred ecccCCcEEEEEeeechhHHHHHHHHHHHHHHhcCCceEEEcCCcceeccEEEECchhhHHHHHHHHHH--HHHHHHHHH
Confidence 9 7799999999999999999999999999999999999999999999999999999999999986 999999999
Q ss_pred hhhcCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCccccccceeE----E
Q 016586 293 NRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSY----I 368 (387)
Q Consensus 293 n~tSR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ctDrl~~A~~----~ 368 (387)
|++||||||++|++++.|+++|+||.|+||||||||||||++|++|+||++++|++.+++|||||||||+++|.- +
T Consensus 159 ~stsr~g~l~~i~~~~~g~~v~lrf~~~TgDAMG~NMv~~~~e~v~~~i~~~~~~~~~~~i~gN~~tdKK~sa~n~~~gR 238 (403)
T cd00643 159 ESTSRHARLQSIKPYIAGRSVYLRFEYTTGDAMGMNMVTKATEAACDWIEENFPDMEVISLSGNFCTDKKPSAINWIEGR 238 (403)
T ss_pred HhcCCCcccceEEEEecCCEEEEEEEEEcCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhhccccCC
Confidence 999999999999999999999999999999999999999999999999999999998999999999999877765 3
Q ss_pred Eeeeeeeee
Q 016586 369 LLSVTNEIW 377 (387)
Q Consensus 369 ~~~v~~e~~ 377 (387)
+..|.+|+=
T Consensus 239 Gk~V~Ae~~ 247 (403)
T cd00643 239 GKSVVAEAT 247 (403)
T ss_pred ceEEEEEEE
Confidence 346665553
No 3
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=100.00 E-value=1.2e-73 Score=609.78 Aligned_cols=246 Identities=50% Similarity=0.813 Sum_probs=236.2
Q ss_pred CCCHHHHHHHHHcCCCCccccccccCChHHHHHHHHHHHHHHhC--CccCCCCCCCCChhhhhhcccccceEEeeeceee
Q 016586 133 SAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTG--RSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGI 210 (387)
Q Consensus 133 ~~~deei~~~v~~g~i~~y~LE~~l~d~~rAv~iRR~~l~~~tg--~sL~~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGV 210 (387)
..+|+||++++.+|+++.|+||+.++|++||+++||++|++.+| .+++++|++++||+++.++||||+|||+|||+||
T Consensus 458 ~l~~~ei~~~~~~g~~~~~~le~~~~~~~~av~~Rr~~l~~~~~~~~~l~~l~~~~~d~~~v~~~~iEN~IG~~~vPvGV 537 (886)
T TIGR00920 458 ALSDAEVISLVNAKHIPAYKLETVLDNPERGVAIRRQILSKKLPMPDALDVLPYKNYDYSKVMGACCENVIGYMPIPVGV 537 (886)
T ss_pred cCCHHHHHHHHhcCCCCccchhhhccCHHHHHHHHHHHHHhhcCCchhhhcCCcCCcCHHHHHhcccceeeeeeecceee
Confidence 35899999999999999999999999999999999999999987 6899999999999999999999999999999999
Q ss_pred ecceEEcCeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHH
Q 016586 211 AGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAV 290 (387)
Q Consensus 211 AGPLlInG~ey~VPMATtEgsLVASanRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~ 290 (387)
||||+|||++|+|||||||||||||+|||||+++.+||+++++++|+|||+|+|+|+++.+|.++++|++++++++.+++
T Consensus 538 AGpL~InG~~y~VPMATtEgsLVAS~nRGaK~i~~~GG~~a~v~~d~MtRapvv~f~~~~~A~~~~~wi~~~e~~~~ik~ 617 (886)
T TIGR00920 538 AGPLLLDGKEYQVPMATTEGCLVASTNRGCRALMLGGGVRSRVLADGMTRGPVVRLPSACRAAEAKAWLEVPENFAVIKD 617 (886)
T ss_pred eccEEECCeEEEEeeeeccchHHHHHhHHHHHHHhcCCeEEEEccCceeeeeeEEeCcHHhHHHHHHHHhChHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998789999999
Q ss_pred HHhhhcCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCccccccce----e
Q 016586 291 VFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSC----S 366 (387)
Q Consensus 291 van~tSR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ctDrl~~A----~ 366 (387)
++++++|||||++|++++.|+++|+||.++||||||||||||++|+++++|+++||++++++|||||||||+++| +
T Consensus 618 ~~~StsR~g~L~~I~~~i~g~~v~lrf~~~TGDAMG~NMVn~atEa~~~~i~~~~~~~~~~sIsgN~ctDKK~sAiN~i~ 697 (886)
T TIGR00920 618 AFDSTSRFARLKKIHIAMAGRNLYIRFQAKTGDAMGMNMISKGTEQALAELQEHFPDMQILSLSGNYCTDKKPAAINWIE 697 (886)
T ss_pred hhhccCcccceeeEEEEeeCCEEEEEEEEEcCchhcchHHHHHHHHHHHHHHHhCCCCeEEEEecccccchhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999988999999999999999999999 4
Q ss_pred EEEeeeeeeeeh
Q 016586 367 YILLSVTNEIWL 378 (387)
Q Consensus 367 ~~~~~v~~e~~~ 378 (387)
-|+.+|.+|+=|
T Consensus 698 gRGk~Vvae~~I 709 (886)
T TIGR00920 698 GRGKSVVCEATI 709 (886)
T ss_pred cCCcEEEEEEEE
Confidence 466677777533
No 4
>TIGR00533 HMG_CoA_R_NADP 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP). This model represents archaeal examples of the enzyme hydroxymethylglutaryl-CoA reductase (NADP) (EC 1.1.1.34) and the catalytic domain of eukaryotic examples, which also contain a hydrophobic N-terminal domain. This enzyme synthesizes mevalonate, a precursor of isopentenyl pyrophosphate (IPP), a building block for the synthesis of cholesterol, isoprenoids, and other molecules. A related hydroxymethylglutaryl-CoA reductase, typified by an example from Pseudomonas mevalonii, is NAD-dependent and catabolic.
Probab=100.00 E-value=2.6e-71 Score=556.74 Aligned_cols=231 Identities=41% Similarity=0.684 Sum_probs=221.6
Q ss_pred CCHHHHHHHHHcCCCCccccccccCChHHHHHHHHHHHHHHhCCccCCCCCCCCChhhhhhcccccceEEeeeceeeecc
Q 016586 134 AQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGP 213 (387)
Q Consensus 134 ~~deei~~~v~~g~i~~y~LE~~l~d~~rAv~iRR~~l~~~tg~sL~~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGVAGP 213 (387)
++|+||++++.+|+++.|+||+++ |++||+++||++|++.+|.++++|+...+|++++.++||||+||++|||+|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~a~~~R~~~l~~~~~~~~~~l~~~~~d~~~~~~~~iEN~IG~~~vPlGvagp 79 (402)
T TIGR00533 1 MENNEILELVLNGKIKLYQLEKKL-GTTRAVEIRRKFIEKLAGLESEHLPNYSIDYERAFGANIENVIGYMQIPLGVAGP 79 (402)
T ss_pred CChHHHHHHHhcCCCCchhhhhhc-CcHHHHHHHHHHHHHhcCCChhhccccCCCHHHHhhcCceeccceeeeceeEecc
Confidence 479999999999999999999987 6999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcC----eEEeeeccccchhHHHHhhhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHH
Q 016586 214 LLLDG----FEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLA 289 (387)
Q Consensus 214 LlInG----~ey~VPMATtEgsLVASanRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~ 289 (387)
|+||| ++|+|||||||||||||+|||||+++.+||+++++++++|+|||+|+|+++.|+.++.+|+++ |+++|+
T Consensus 80 l~InG~~a~~~~~VPmAT~E~slVAS~srGak~i~~~GG~~~~v~~~~M~r~~~~~~~~~~da~~~~~~i~~--~~~~i~ 157 (402)
T TIGR00533 80 LKIDGEYAKGEYYIPLATTEGALVASVNRGCSAITAGGGATVRVTKDGMTRAPVVRTPSVVRAGACRIWIDE--NQNAIK 157 (402)
T ss_pred EEEcCcccCceEEEeeeechhhHHHHHhHHHHHHHhcCCeEEEECCCcEEccEEEEeCChhhHHHHHHHHHH--HHHHHH
Confidence 99999 799999999999999999999999999999999999999999999999999999999999985 999999
Q ss_pred HHHhhhcCCcceeeEEE-EecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCC--CCeEEEEeCCCcccccccee
Q 016586 290 VVFNRSSRFARLQHIQC-SIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFP--DMDVIGISGMCLVIYLKSCS 366 (387)
Q Consensus 290 ~van~tSR~GgL~~I~~-~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp--~~~visIsgN~ctDrl~~A~ 366 (387)
++||+++|||||++|++ .+.|+++|+||.|||||||||||||+++|++|++|++++| ++++++||||||+||++++.
T Consensus 158 ~~a~~tsr~g~l~~i~~~~~~g~~v~l~f~~~tgDAMG~Nmvn~a~e~v~~~i~~~~~~~~~~~~~I~sN~~tdkk~sa~ 237 (402)
T TIGR00533 158 EAAESTTRHGKLQKIQPICLAGDLLYPRFVTTTGDAMGMNMVTIATEYALKQMVEEYGWEGMEVVAVSGNYCTDKKPAAI 237 (402)
T ss_pred HHHHhhCCCCceeeeEEEeccCCEEEEEEEEEccccccchHHHHHHHHHHHHHHHHcCCCCceEEEEeccCccchhhhhh
Confidence 99999999999999998 5789999999999999999999999999999999999886 56789999999999995554
Q ss_pred E
Q 016586 367 Y 367 (387)
Q Consensus 367 ~ 367 (387)
.
T Consensus 238 n 238 (402)
T TIGR00533 238 N 238 (402)
T ss_pred c
Confidence 3
No 5
>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]
Probab=100.00 E-value=3.9e-68 Score=535.49 Aligned_cols=237 Identities=38% Similarity=0.519 Sum_probs=223.2
Q ss_pred HHHHHHcCCCCccccccccCChHHHHHHHHHHHHHHhCCccCCCCCCCCChh---hhhhcccccceEEeeeceeeecceE
Q 016586 139 VVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYD---SILGQCCEMPVGYVQIPVGIAGPLL 215 (387)
Q Consensus 139 i~~~v~~g~i~~y~LE~~l~d~~rAv~iRR~~l~~~tg~sL~~L~~~~~Dy~---~i~g~~iEN~IG~vqIPvGVAGPLl 215 (387)
+++++.+|++++|++|++.+ .++++++||++|++.++.+++++.....|++ +++++||||+||++|+|+||||||+
T Consensus 2 ~~~~~~~~~~~~~~~~~f~~-~~~a~~~Rr~~l~~~~~l~~~~~~~~~~d~~~~~~~~~~~iENvIG~~~lPlGia~~l~ 80 (436)
T COG1257 2 VVQKVLAGEIKLSELEKFYK-ANKAVEERRQALERFTGLSLEEIGSLSIDGSLPIDVANRNIENVIGTVQLPLGIAGPLL 80 (436)
T ss_pred hhhhhhcccchhhhhhhhcc-ccccHHHHHHHHHHHhCCChhhhhhhccCcchhHHHHHHhhhhhhceeeeecccccceE
Confidence 67899999999999999984 7899999999999999999999998888876 9999999999999999999999999
Q ss_pred EcCeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhh
Q 016586 216 LDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRS 295 (387)
Q Consensus 216 InG~ey~VPMATtEgsLVASanRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~van~t 295 (387)
|||++|+|||||||||||||+|||||+|+++||+++++++|+|||||+|+|.+..++.+++.|++.+++++.++++++++
T Consensus 81 InG~~Y~iPmATtEgalVAs~~rgaK~i~~~GG~~~~~~~~~Mtr~~v~~~~~~~~a~~~~~w~~~~e~~e~~k~~~~s~ 160 (436)
T COG1257 81 INGKEYYIPMATTEGALVASASRGAKLITASGGATARVTEDGMTRQPVFRFVSLPEAAKFAIWVKKKEIIELAKEAAPST 160 (436)
T ss_pred EcCceeEEeeeccchHHHHHHHhHHHHHHhcCCcEEEEeccccccccEEecCchHHHHHHHHHhhhHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred cCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhC-CCCeEEEEeCCCcccc--ccce--eEEEe
Q 016586 296 SRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDF-PDMDVIGISGMCLVIY--LKSC--SYILL 370 (387)
Q Consensus 296 SR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~f-p~~~visIsgN~ctDr--l~~A--~~~~~ 370 (387)
+||||+++|++.+.|+++|+||.+||||||||||||+++|+++++|+++| ++..+++||||||||+ .+.+ ..+..
T Consensus 161 ~~~~kl~~i~~~~~g~~l~l~~~~dT~DAMGmNMvn~~~E~v~~~i~~~~~~~~~~~~issN~ctdkk~~a~~~~~grgk 240 (436)
T COG1257 161 GRGGKLIHIEPFVEGNLLYLRFYVDTGDAMGMNMVNIATEAVAPFIEEETFGGAVLLAISSNLCTDKKPAAINSIEGRGK 240 (436)
T ss_pred CCcceeeeeeeeccCcEEEEEEEEecchhhhhHHHHHHHHHHHHHHHHhccCCceEEEEecccccccchhheEEEEeccc
Confidence 99999999999999999999999999999999999999999999999996 6888899999999999 4443 44555
Q ss_pred eeeeee
Q 016586 371 SVTNEI 376 (387)
Q Consensus 371 ~v~~e~ 376 (387)
+|..|+
T Consensus 241 ~v~ae~ 246 (436)
T COG1257 241 TVVAEA 246 (436)
T ss_pred eeeccc
Confidence 666554
No 6
>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) [, ]. Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds []. The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids []. Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA []. Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I).; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050662 coenzyme binding, 0015936 coenzyme A metabolic process, 0055114 oxidation-reduction process; PDB: 2Q6B_C 2Q6C_D 1HWI_C 1HWJ_C 3CD5_B 2R4F_C 1HWL_B 1HWK_C 1DQA_B 3CCT_D ....
Probab=100.00 E-value=2.5e-65 Score=510.18 Aligned_cols=215 Identities=40% Similarity=0.575 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHhCCc--cCCCCCCCCChhhhhhcccccceEEeeeceeeecceEEcCeEEeeeccccchhHHHHhhh
Q 016586 161 RRAAAIRREALQKMTGRS--LQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNR 238 (387)
Q Consensus 161 ~rAv~iRR~~l~~~tg~s--L~~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGVAGPLlInG~ey~VPMATtEgsLVASanR 238 (387)
+|++++||++|++.++.+ +++++..++|+++++++||||+||+++||+||||||+|||++|+|||||||||||||+||
T Consensus 1 ~ka~~~Rr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~lPlGvagpl~InG~~y~VPmATeE~svVAsasr 80 (373)
T PF00368_consen 1 KKAIEERREFLEELTGTSEQLEHLPNYSLDPEEVADQMIENVIGYVQLPLGVAGPLLINGKDYYVPMATEEPSVVASASR 80 (373)
T ss_dssp -CHHHHHHHHHHTTSSCCCHHHHCTTTTS-HHTHHHHHSSSEEEEEEEEEEEEEEEEETTEEEEEEEE-SSTTHHHHHHH
T ss_pred CchHHHHHHHHHhhhCcchhHHhCCccCCCHHHHhccCCceeeeEEEEeeEEEccEEEcCEEEEeeeceechhHHHhhhh
Confidence 579999999999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhhcCCcceeeEEEEecCCeEEEEEE
Q 016586 239 GCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFC 318 (387)
Q Consensus 239 GaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~van~tSR~GgL~~I~~~i~G~~l~lrf~ 318 (387)
|||+++.+||+++.+.++.|+|||+|.|+++.|+.++++|+++ |+++|+++||.+||||||++|++++.|+++++||.
T Consensus 81 Gak~i~~sGG~~t~v~~~~m~rq~~~~f~~~~~a~~~~~~i~~--~~~~l~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~ 158 (373)
T PF00368_consen 81 GAKAINESGGFTTSVLEDGMTRQPVFVFDDVEDAAAFKQWIEE--NFEELKEIANSTSRGGGLRDIEVRIVGRFVHLRFH 158 (373)
T ss_dssp HHHHHHHTTSBEEEEEEEEEEEEEEEE-SSHSHHHHHHHHHHH--THHHHHHHHHHHCCTEEEEEEEEEECSTEEEEEEE
T ss_pred HHHHHhhcCCeEEEEcCCceeeeeEEEeCCHhhHHHHHHHHHH--HHHHHHHhhhhcCCceeeeEEEEEecCCEEEEEEE
Confidence 9999999999999999999999999999999999999999995 99999999999999999999999999999999999
Q ss_pred eeccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCcccccccee----EEEeeeeeeee
Q 016586 319 CTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCS----YILLSVTNEIW 377 (387)
Q Consensus 319 ~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ctDrl~~A~----~~~~~v~~e~~ 377 (387)
|||||||||||||+++|++|+||++++++..+++|+||||+||++++. -+++.|++|+.
T Consensus 159 ~dtgDAMGaNmvn~~~e~v~~~i~~~~~~~~~~~I~sN~~~dKK~s~~n~~~grG~~v~A~~~ 221 (373)
T PF00368_consen 159 YDTGDAMGANMVNTATEAVCPWIEEQFGGMVLMSILSNLCTDKKPSAINWIEGRGKLVTAEAT 221 (373)
T ss_dssp EEETTC--HHHHHHHHHHHHHHHHHHHTSEEEEEEE-SSSCCSS--HHHHHH--ECEEEEEEE
T ss_pred EEccccchhhHHHHHHHHHHHHHHHhcccceEEeeecccchhhhhhhhheeccCCEEEEEEEE
Confidence 999999999999999999999999999888889999999999554443 33344444443
No 7
>cd00644 HMG-CoA_reductase_classII Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class II, prokaryotic enzyme is a homodimer. Class II enzymes are found primarily in prokaryotes and Archaeoglobus fulgidus and are soluble as they lack the membrane region. Enzymes catalyze the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. Human and bacterial HMGR differ in their active site architecture.
Probab=100.00 E-value=1.7e-62 Score=495.22 Aligned_cols=207 Identities=21% Similarity=0.232 Sum_probs=197.3
Q ss_pred ChHHHHHHHHHHHHHH---hCCccCCCCCCCCChhhhhhcccccceEEeeeceeeecceEEcCeEEeeeccccchhHHHH
Q 016586 159 DCRRAAAIRREALQKM---TGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVAS 235 (387)
Q Consensus 159 d~~rAv~iRR~~l~~~---tg~sL~~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGVAGPLlInG~ey~VPMATtEgsLVAS 235 (387)
-+++++++||++|++. ++..++.++.++.|+++++++||||+||+++||+||||||+|||++|+|||||||||||||
T Consensus 3 fy~~s~~eR~~~l~~~~~lt~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~vP~Gvag~l~InG~~y~VPMATeE~svVAs 82 (417)
T cd00644 3 FYKLSPEERLQILAEFAGLSEEDVQLLKSGGALPLELADQMIENVIGTFSLPLGVATNFLVNGKDYLVPMATEEPSVVAA 82 (417)
T ss_pred ccccCHHHHHHHHHHhcCCCHHHHHHHhccCCChHHHHhcCcccccceeecceeEeccEEECCeEEEEeeeeccchHHHH
Confidence 4678899999999996 6667888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhhc-----CCcceeeEEEEecC
Q 016586 236 TNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSS-----RFARLQHIQCSIAG 310 (387)
Q Consensus 236 anRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~van~tS-----R~GgL~~I~~~i~G 310 (387)
+|||||+++.+||+++.+.+++|+|||+| .++.|+.++.+|+++ |+++|++++|+++ |||||++|++++.|
T Consensus 83 ~srGak~i~~~GG~~~~~~~~~m~~q~~~--~~~~~a~~~~~~i~~--~~~~l~~~a~~~~ps~~~rgggl~~i~~~~~~ 158 (417)
T cd00644 83 ASNAAKIARKSGGFKTSSSDRLMIGQIQL--VDVSDPAKARAFILA--HKDEILEIANEAHPSLVKRGGGARDIEVRVLD 158 (417)
T ss_pred HhHHHHHHHhcCCEEEEECCCceEeccEE--CcccCHHHHHHHHHH--hHHHHHHHHHhhChhHHhcCCceeEEEEEecC
Confidence 99999999999999999999999999986 777899999999986 9999999999984 99999999999998
Q ss_pred ----CeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCccccccceeEEE
Q 016586 311 ----KNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSYIL 369 (387)
Q Consensus 311 ----~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ctDrl~~A~~~~ 369 (387)
+++|+||.+||||||||||||+++|+++++|++++|+..+++||||||+||+++|++++
T Consensus 159 ~~~~~~v~l~~~~dtgDAMGaNmvn~~~eav~~~l~~~~~~~~~~~IlsN~~tdk~v~A~~~i 221 (417)
T cd00644 159 ADLGDFLSVHLLVDTKDAMGANIVNTMLEAVAPLLEEITGGEVLLRILSNYATERLVRAKVSI 221 (417)
T ss_pred CCCCCeEEEEEEEEccchhcchhHHHHHHHHHHHHHHhCCcceeEEEeccCCCCceEEEEEEE
Confidence 99999999999999999999999999999999999988889999999999999999876
No 8
>TIGR00532 HMG_CoA_R_NAD hydroxymethylglutaryl-CoA reductase, degradative. Most known examples of hydroxymethylglutaryl-CoA reductase are NADP-dependent (EC 1.1.1.34) from eukaryotes and archaea, involved in the biosynthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA. This model, in contrast, is built from the two examples in completed genomes of sequences closely related to the degradative, NAD-dependent hydroxymethylglutaryl-CoA reductase of Pseudomonas mevalonii, a bacterium that can use mevalonate as its sole carbon source.
Probab=100.00 E-value=5.5e-61 Score=481.34 Aligned_cols=223 Identities=19% Similarity=0.225 Sum_probs=201.6
Q ss_pred HcCCCCccccccccCChHHHHHHHHHHHHHHhC---CccCCCCCCCCChhhhhhcccccceEEeeeceeeecceEEcCeE
Q 016586 144 IDGSIPSYALESKLGDCRRAAAIRREALQKMTG---RSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFE 220 (387)
Q Consensus 144 ~~g~i~~y~LE~~l~d~~rAv~iRR~~l~~~tg---~sL~~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGVAGPLlInG~e 220 (387)
.+|++++|++++..+-+++++++||++|++.++ .+++.|+...+|++...++||||+||+++||+||||||+|||++
T Consensus 3 ~~~~~~~~~~~~~~~f~~~s~~eR~~~l~~~~~l~~~~~~~l~~~~l~~~~a~~~~iEN~Ig~~~vPlGvAg~l~InG~~ 82 (393)
T TIGR00532 3 KEGKIRFAELSKIFGFYHKSVEEKLKEIAEFAELSDEEVKAFFSNGANEDFAFDRMIENVIGTFEFPIGIAKNFKIDGKD 82 (393)
T ss_pred cccccchhhhccccChhhcCHHHHHHHHHHhcCCCHHHHHHHhhCCCCHHHHhccCcccccceeeeceeEeccEEECCeE
Confidence 479999999999775599999999999999999 56778888778888777999999999999999999999999999
Q ss_pred EeeeccccchhHHHHhhhhhhhhhccCCeEEEeccCeeecce-EEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhhc---
Q 016586 221 YSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAP-IVRFASAMRASELKFFLEDPNNFETLAVVFNRSS--- 296 (387)
Q Consensus 221 y~VPMATtEgsLVASanRGaKaI~~sGG~~t~v~~d~MTRap-v~~f~s~~dA~~l~~wie~p~n~~~L~~van~tS--- 296 (387)
|+|||||||||||||+|||||+++.+||+++.+.+++|+||+ ++.++|..+ +.+|+.+ ++++|++++|+++
T Consensus 83 y~VPMATeE~svVAs~srGak~~~~~GG~~~~v~~~~M~gqi~~~~~~~~~~---a~~~~~~--~~~~i~~~a~~~~~~~ 157 (393)
T TIGR00532 83 YLIPIAIEEPSVVAAANFAAKIAEEADGFTSDGEGLGIIGQIQQIKIKNEKA---AKFEFLD--LGDEIIERAEECDPML 157 (393)
T ss_pred EEEEeeeccccHHHHHHHHHHHHHhcCCeEEEEcCCceEEEEEEEecCCHHH---HHHHHHH--HHHHHHHHHHHhCHHH
Confidence 999999999999999999999999999999999999999887 566676544 3445543 8999999999986
Q ss_pred --CCcceeeEEEE----ecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCccccccceeEEEe
Q 016586 297 --RFARLQHIQCS----IAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSYILL 370 (387)
Q Consensus 297 --R~GgL~~I~~~----i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ctDrl~~A~~~~~ 370 (387)
||||+++|+++ +.|+++|+||.|||||||||||||+++|+++++|++++|+..+++||||||+||+++++++..
T Consensus 158 ~~rggg~~~i~~r~~~~~~g~~v~l~~~~dtgDAMGaNmvn~~~Eav~~~i~~~~~~~~~~~IlsN~~~dk~~~arg~~~ 237 (393)
T TIGR00532 158 NNLGGGCKDIEARVIDIIEGGILILHIIVDTCDAMGANALNSIAEKVAEFIELEFGGECVLKIISNDAAEFTAKARAKAD 237 (393)
T ss_pred HhhcCCeEEEEEEeeecccCCEEEEEEEEecccccccHHHHHHHHHHHHHHHHhCCCceEEEEecCccccceEEEEEEEE
Confidence 99999999986 568999999999999999999999999999999999998877799999999999998877764
Q ss_pred e
Q 016586 371 S 371 (387)
Q Consensus 371 ~ 371 (387)
-
T Consensus 238 ~ 238 (393)
T TIGR00532 238 F 238 (393)
T ss_pred h
Confidence 3
No 9
>cd00365 HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) is a tightly regulated enzyme, which catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals, this is the rate limiting committed step in cholesterol biosynthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. There are two classes of HMGR: class I enzymes which are found predominantly in eukaryotes and contain N-terminal membrane regions and class II enzymes which are found primarily in prokaryotes and are soluble as they lack the membrane region. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR
Probab=100.00 E-value=1.3e-58 Score=462.24 Aligned_cols=213 Identities=19% Similarity=0.194 Sum_probs=198.8
Q ss_pred cccccccCChHHHHHHHHHHHHHHhCCccCCCCCCCCChhhhhhcccccceEEeeeceeeecceEEcCeEEeeeccccch
Q 016586 151 YALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEG 230 (387)
Q Consensus 151 y~LE~~l~d~~rAv~iRR~~l~~~tg~sL~~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGVAGPLlInG~ey~VPMATtEg 230 (387)
|.+|+.. |++|++++|++++. .++.+++.|+...+|++.. ++||||+||+++||+||||||+|||++|+||||||||
T Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~-lt~~~~~~l~~~~l~~~~~-~~~iEN~IG~~~vPlGva~~l~InG~~y~VPmATeE~ 77 (376)
T cd00365 1 PAFRTLS-PHAARLDHIGQLLG-LSHDDVQLLANAALPMDIA-NGMIENVIGTFELPYAVASNFQIDGRDVLVPLVTEEP 77 (376)
T ss_pred Cchhhhc-CHHHHHHHHHHHhc-cChHHHhhccccCCCHHHH-hcccccccceeeeeeEEecCEEEcCcEEEEEeEecch
Confidence 4567776 79999999999985 5888899999988898876 9999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhhcCC-----cceeeEE
Q 016586 231 CLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRF-----ARLQHIQ 305 (387)
Q Consensus 231 sLVASanRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~van~tSR~-----GgL~~I~ 305 (387)
|||||+|||||+++.+||+++.+.+++|+|||+|.|.+ |+.++++|+++ +|+++|++++|+++++ ||+++|+
T Consensus 78 svVAs~srgak~i~~~GG~~~~~~~~~m~~q~~~~~~~--d~~~~~~~i~~-~~~~~i~~~a~~~~~~~~~rgggl~~i~ 154 (376)
T cd00365 78 SIVAAASYMAKLARAGGGFTTSSSAPLMHAQVQIVLIQ--DPLNAKLSLLR-SGKDEIIELANRKDQLLNSLGGGCRDIE 154 (376)
T ss_pred hHHHHHHHHHHHHHhcCCEEEEECCCcEEeeeEEEeCC--CHHHHHHHHHh-hhHHHHHHHHhhhCcchhccCccceEEE
Confidence 99999999999999999999999999999999999987 99999999983 3999999999999666 9999999
Q ss_pred EEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCe--EEEEeCCCccccccceeEEE
Q 016586 306 CSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMD--VIGISGMCLVIYLKSCSYIL 369 (387)
Q Consensus 306 ~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~--visIsgN~ctDrl~~A~~~~ 369 (387)
+++.|+++++||.+||||||||||||+++|+++++|++++++.+ .++|++|+++.|+++|++++
T Consensus 155 ~~~~~~~v~l~~~~dtgDAMGaNmvn~~~eav~~~i~~~~~~~~~~~~si~~n~~~g~~v~A~~~I 220 (376)
T cd00365 155 VHTFGPMLVAHLIVDVGDAMGANMINTMAEAVAPLMEAYTGGMQVRLRSLSNLTGDGRLARAQARI 220 (376)
T ss_pred EEeeCCEEEEEEEEEccchhhchhHHHHHHHHHHHHHHHcCCCceEEEEEecccCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999888764 48899999999999999986
No 10
>PF14150 YesK: YesK-like protein
Probab=74.68 E-value=3.4 Score=34.50 Aligned_cols=57 Identities=21% Similarity=0.475 Sum_probs=35.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHhhhhcCCCccccc-hHHHHHHHHHHHHHHHHHhhcCcc
Q 016586 35 LYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVT-LSEIAAIVSLIASFIYLLGFFGID 95 (387)
Q Consensus 35 ~~~~n~~~~~~f~~~~~~l~~~wr~kir~s~plh~~~-~~e~~~~~~~~as~~yl~~ffgi~ 95 (387)
+|+.-++++.+.|+++|++=+||++|- |--.++ ..=+..+..++-|.++.=|+.|++
T Consensus 1 f~llg~~~~ii~f~~S~~lr~r~p~k~----~~~il~~ililis~~~v~~S~f~vGGweGmg 58 (81)
T PF14150_consen 1 FYLLGIVTFIIVFGVSVLLRKRFPKKQ----PEIILPLILILISLLTVLISIFLVGGWEGMG 58 (81)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCCCcc----hhHHHHHHHHHHHHHHHHHHHheEcchhhhh
Confidence 367778999999999999999999984 443333 122233333444444444555544
No 11
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=72.13 E-value=8.7 Score=35.45 Aligned_cols=70 Identities=29% Similarity=0.639 Sum_probs=42.0
Q ss_pred CCCCCccchhhhhhh------HHH-------HHHHHHHHHHHHHhHhhhhcCCCccccchHHHHHHHH-HHHHHHHHHhh
Q 016586 26 KASDALPLPLYLTNA------IFF-------TLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVS-LIASFIYLLGF 91 (387)
Q Consensus 26 ~~~~~lplp~~~~n~------~~~-------~~f~~~~~~l~~~wr~kir~s~plh~~~~~e~~~~~~-~~as~~yl~~f 91 (387)
...+...+|.+++|= +|. ..+|.+.|||..+ . .+ |+-..+. ++.-+.|.+|+
T Consensus 46 ~~~~~~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~--~---------~~---dvP~~~~~~~S~~~Fg~gl 111 (153)
T PF11947_consen 46 RDEDDSAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSR--Q---------IV---DVPPWAVLLVSLVFFGLGL 111 (153)
T ss_pred ccccccccCHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhc--c---------cc---ccCchHHHHHHHHHHHHHH
Confidence 356777888899983 222 2367777888764 1 12 2323333 34445688999
Q ss_pred cCccccccccCCCCCccCCcccCC
Q 016586 92 FGIDFVQSFISRATPEAWDLEEDD 115 (387)
Q Consensus 92 fgi~~~~~~~~~~~~~~~~~~~~~ 115 (387)
.||.|- +++ .+||.+.+.
T Consensus 112 lGisYG--ilS----aSWD~~r~G 129 (153)
T PF11947_consen 112 LGISYG--ILS----ASWDPEREG 129 (153)
T ss_pred Hhhhhh--hcc----cccCCCCCC
Confidence 999984 222 248876544
No 12
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=71.43 E-value=16 Score=35.76 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=51.3
Q ss_pred CCHHHHHHHHhhhcCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeE
Q 016586 283 NNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV 350 (387)
Q Consensus 283 ~n~~~L~~van~tSR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~v 350 (387)
+..+++++..++....-++.+++.+..|+..++.+.+...+.|-..=.....+++-+.|++++|+.++
T Consensus 213 ~~~~~I~~~i~~~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~~v 280 (299)
T PRK09509 213 EERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGSDV 280 (299)
T ss_pred HHHHHHHHHHHhCCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 34567777777765556778899999999988888888877775444556678888888888887765
No 13
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=60.37 E-value=63 Score=30.43 Aligned_cols=66 Identities=6% Similarity=0.145 Sum_probs=49.6
Q ss_pred CCHHHHHHHHhhhcCCcceeeEEEEecCC-eEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCC
Q 016586 283 NNFETLAVVFNRSSRFARLQHIQCSIAGK-NLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDM 348 (387)
Q Consensus 283 ~n~~~L~~van~tSR~GgL~~I~~~i~G~-~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~ 348 (387)
+..+++++..++....-++.+++.+..|+ .+++.+.+...+.|-..-..+..+.+-+.|++++|+.
T Consensus 192 ~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v 258 (268)
T TIGR01297 192 EDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGI 258 (268)
T ss_pred ccHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCC
Confidence 45677777777554455778899999998 8888888888776655555677778888787777776
No 14
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=58.38 E-value=12 Score=28.66 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.3
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHH
Q 016586 31 LPLPLYLTNAIFFTLFFSVAYYLLH 55 (387)
Q Consensus 31 lplp~~~~n~~~~~~f~~~~~~l~~ 55 (387)
=|||-...-.++.|..|++.|+++.
T Consensus 18 nplP~ww~~~f~~tivfa~~Y~~~y 42 (51)
T PF14715_consen 18 NPLPRWWLWLFYGTIVFAVGYLVLY 42 (51)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999874
No 15
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=53.71 E-value=20 Score=28.71 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=22.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhHhhhh
Q 016586 33 LPLYLTNAIFFTLFFSVAYYLLHRWREKIR 62 (387)
Q Consensus 33 lp~~~~n~~~~~~f~~~~~~l~~~wr~kir 62 (387)
.|+.+.=.+-...=+..+|++++|||++.-
T Consensus 30 ~p~~~~~l~A~vis~~lS~~ll~~~R~~~~ 59 (69)
T PF14012_consen 30 VPLLVAALLALVISMPLSYVLLRRLRDRAS 59 (69)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555556667789999999999863
No 16
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=47.30 E-value=1.1e+02 Score=28.90 Aligned_cols=66 Identities=9% Similarity=0.196 Sum_probs=52.9
Q ss_pred CHHHHHHHHhhhcCCcceeeEEEEecCC-eEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCe
Q 016586 284 NFETLAVVFNRSSRFARLQHIQCSIAGK-NLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMD 349 (387)
Q Consensus 284 n~~~L~~van~tSR~GgL~~I~~~i~G~-~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~ 349 (387)
..+++++..++....-++.+++.+..|+ .+++.+.+..-..|..-=.....+++.+.+++++|+..
T Consensus 206 ~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~ 272 (284)
T PF01545_consen 206 LVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIY 272 (284)
T ss_dssp HHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred chhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcE
Confidence 3467777777767777999999999998 89999999988877655566788899999999998876
No 17
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=45.13 E-value=98 Score=30.98 Aligned_cols=78 Identities=12% Similarity=0.253 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHhhhcCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCcc
Q 016586 282 PNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLV 359 (387)
Q Consensus 282 p~n~~~L~~van~tSR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ct 359 (387)
|+..++++++..+...--++.+++.+..|+..+++++....+.|.-==.-..++.+-+.|++.+|+..-+-|.-+=+.
T Consensus 214 ~~~~~~i~~~i~~~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~ 291 (304)
T COG0053 214 PEDLEKIRAIILSVPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLG 291 (304)
T ss_pred HHHHHHHHHHHhcCCcceeeecceeeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCc
Confidence 445667777777777667889999999999999999999999888777777888888888888885444444444333
No 18
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=41.63 E-value=21 Score=30.59 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=21.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHhh
Q 016586 34 PLYLTNAIFFTLFFSVAYYLLHRWREK 60 (387)
Q Consensus 34 p~~~~n~~~~~~f~~~~~~l~~~wr~k 60 (387)
+-.++..+.|.++|.+.|||+.|=..|
T Consensus 6 ~~~~~~ll~~vl~~~ifyFli~RPQrK 32 (97)
T COG1862 6 GSGLVLLLPLVLIFAIFYFLIIRPQRK 32 (97)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 457788899999999999998765433
No 19
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=38.93 E-value=29 Score=32.03 Aligned_cols=21 Identities=14% Similarity=0.501 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 016586 36 YLTNAIFFTLFFSVAYYLLHR 56 (387)
Q Consensus 36 ~~~n~~~~~~f~~~~~~l~~~ 56 (387)
|..+.++|.++|.+.||+|.+
T Consensus 30 ~~~q~~~~lI~F~iL~~ll~k 50 (181)
T PRK13454 30 FPNQIFWLLVTLVAIYFVLTR 50 (181)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 445777888889999999987
No 20
>COG5548 Small integral membrane protein [Function unknown]
Probab=38.05 E-value=46 Score=28.99 Aligned_cols=48 Identities=31% Similarity=0.410 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHhhhhcCCCccccchHHHHHHHHHHHHHHHHHhhcCcccccc
Q 016586 36 YLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQS 99 (387)
Q Consensus 36 ~~~n~~~~~~f~~~~~~l~~~wr~kir~s~plh~~~~~e~~~~~~~~as~~yl~~ffgi~~~~~ 99 (387)
-|-.++||.+-|.++-||++|=|+. --+.++.+|.. ||+||++-|+-|
T Consensus 30 SL~sG~~~G~~~~~A~yL~~~g~~~---------------Gl~~A~~~s~~-Ll~~~~~R~~~s 77 (105)
T COG5548 30 SLLSGVFSGLLLFVAAYLQLQGQTW---------------GLILATVVSAA-LLVFFALRLVRS 77 (105)
T ss_pred hhHHHHHHhHHHHHHHHHHHcCccc---------------CeehHHHHHHH-HHHhcchhcccc
Confidence 3567899999999999999875442 11334455543 889999999876
No 21
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=37.66 E-value=69 Score=28.94 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=40.4
Q ss_pred CChhcHHHHHHHhcCCCCHHHHHHHHhhh-cCCcceeeEEEEe----------------cCCeEEEEEEeeccccccch
Q 016586 267 ASAMRASELKFFLEDPNNFETLAVVFNRS-SRFARLQHIQCSI----------------AGKNLYIRFCCTTGDAMGMN 328 (387)
Q Consensus 267 ~s~~dA~~l~~wie~p~n~~~L~~van~t-SR~GgL~~I~~~i----------------~G~~l~lrf~~dTGDAMGmN 328 (387)
....+..+.++|+++ |.++|.+++++. ..-|.-.++++.+ +|.+=-+| +.-|++-|.|
T Consensus 38 ~~~~~~~ea~~~i~~--~~~~Ie~~A~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeAlr--I~IG~g~G~N 112 (130)
T PF09551_consen 38 SQAKSKEEAREVIRE--NLPEIEQIAEEVLAEEGYDYPVKVELGRFYFPTKTYGDIVLPAGEYEALR--ITIGEGKGHN 112 (130)
T ss_pred ccCCCHHHHHHHHHH--hHHHHHHHHHHHHHHhCCCCcEEEEEEeeeCCCceECCEeccCCceEEEE--EEecCccCcc
Confidence 445678888999986 999999999977 4444444555543 25554444 5568888988
No 22
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=37.61 E-value=2.5e+02 Score=25.14 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=56.5
Q ss_pred CHHHHHHHHhhhcCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCC
Q 016586 284 NFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMC 357 (387)
Q Consensus 284 n~~~L~~van~tSR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ 357 (387)
+.+.-..+++...+--++.+..+.+.|+.+||=+..+ .+ .....+.-+.|.+.+++.+|++.-+-+|+|.
T Consensus 73 ~~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~-~~---~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~ 142 (177)
T PF09580_consen 73 RQQLADRIANRVKKVPGVEDATVVVTDDNAYVAVDLD-FN---RFNTKKIKKKVEKAVKSADPRIYNVYVSTDP 142 (177)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEECCEEEEEEEec-cc---ccchhHHHHHHHHHHHHhCCCccEEEEEcCH
Confidence 3444456667778888999999999999999999888 44 5778888899999999989987777777763
No 23
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=37.51 E-value=67 Score=29.60 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhhcCCCccccchHHHHHHHHHHHHHHHHHhhcCcccccc
Q 016586 39 NAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQS 99 (387)
Q Consensus 39 n~~~~~~f~~~~~~l~~~wr~kir~s~plh~~~~~e~~~~~~~~as~~yl~~ffgi~~~~~ 99 (387)
+.-+++.++-.+|+.+|.++ +-| ...++..+.++-++-++++||+.++..
T Consensus 162 ~~sli~Wl~y~~~lh~r~~~-~~~----------gr~~a~~~i~gf~~~~~~~~gv~~~~~ 211 (214)
T PF01578_consen 162 VWSLITWLVYGAYLHLRSWK-GWR----------GRRAAYLSIIGFLLLLLSYFGVNLLLE 211 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhh-chh----------hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455656666666676555 444 235678888888999999999998764
No 24
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=36.12 E-value=37 Score=23.43 Aligned_cols=26 Identities=27% Similarity=0.671 Sum_probs=17.0
Q ss_pred CCCCCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 016586 25 PKASDALPLPLYLTNAIFFTLFFSVAYYLLHR 56 (387)
Q Consensus 25 ~~~~~~lplp~~~~n~~~~~~f~~~~~~l~~~ 56 (387)
||.||.-|+=+ |.++|-++..||++|
T Consensus 2 PkT~D~a~i~l------y~~l~~~s~~~Li~k 27 (29)
T TIGR03063 2 PKTGDSAQIGL------YAVLFLGSGLFLIRK 27 (29)
T ss_pred CCCccchhHHH------HHHHHHHHHHHHhhc
Confidence 46788877644 445666666777755
No 25
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=35.47 E-value=33 Score=26.40 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=26.4
Q ss_pred hhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCC
Q 016586 237 NRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDP 282 (387)
Q Consensus 237 nRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p 282 (387)
..|.|++..+|...+.--...-.+-.++.|+|.+ .++.|.++|
T Consensus 17 ~~GG~~l~~~~~~~~leG~~~~~~~viieFPs~~---aa~~~~~sp 59 (65)
T PF07045_consen 17 KYGGRVLARGGEPEVLEGDWDPDRVVIIEFPSME---AAKAWYNSP 59 (65)
T ss_dssp HTT-EEEEECEEEEEEEST-SSSEEEEEEESSHH---HHHHHHCSH
T ss_pred HcCCEEEEECCceeEEecCCCCCeEEEEECCCHH---HHHHHHCCH
Confidence 4677777664444433332555777899999863 356788875
No 26
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=34.00 E-value=57 Score=27.28 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=30.1
Q ss_pred ccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcC
Q 016586 245 ASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLED 281 (387)
Q Consensus 245 ~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~ 281 (387)
..+|+.|.-.++ |..++.|.+-+||.+...-|+.
T Consensus 11 ~~eGI~si~~~~---~~~Vl~FE~edDA~RYa~lLEA 44 (86)
T PF11360_consen 11 ETEGIYSIQNKD---RNVVLMFEDEDDAERYAGLLEA 44 (86)
T ss_pred CCCcEEEEEeCC---CCEEEEEccHHHHHHHHHHHHh
Confidence 578999988777 8889999999999999999975
No 27
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=33.73 E-value=1.4e+02 Score=26.07 Aligned_cols=49 Identities=18% Similarity=0.380 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhhcCCCccccchHHH---HHHHHHHHHHHHHHhh
Q 016586 39 NAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEI---AAIVSLIASFIYLLGF 91 (387)
Q Consensus 39 n~~~~~~f~~~~~~l~~~wr~kir~s~plh~~~~~e~---~~~~~~~as~~yl~~f 91 (387)
|-+.+.+.+...|+.+++-|||..+. ..++.+- .-.++++|++++.+.-
T Consensus 34 ~~~~~~~~~~~i~~~i~~~R~~~~~g----~isf~~a~~~g~~~~~ia~li~~v~~ 85 (163)
T PF13858_consen 34 GILSMVITIIFIYFAIRRYRKKYNGG----FISFGQAFKVGFLISLIAGLISAVFQ 85 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC----CeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677777899999999987665 4777773 4456677777765543
No 28
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=32.99 E-value=39 Score=33.17 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=22.9
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHH
Q 016586 31 LPLPLYLTNAIFFTLFFSVAYYLLH 55 (387)
Q Consensus 31 lplp~~~~n~~~~~~f~~~~~~l~~ 55 (387)
=|||-+..-.++.|+.|+++|+++-
T Consensus 24 n~~P~ww~~~f~~~i~~~~~y~~~y 48 (285)
T TIGR00782 24 NPLPRWWLWTFYATIVWGFGYLVAY 48 (285)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999998875
No 29
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=29.13 E-value=91 Score=29.40 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=37.7
Q ss_pred hhcHHHHHHHhcCCCCHHHHHHHHhhh-cCCcceeeEEEEe----------------cCCeEEEEEEeeccccccch
Q 016586 269 AMRASELKFFLEDPNNFETLAVVFNRS-SRFARLQHIQCSI----------------AGKNLYIRFCCTTGDAMGMN 328 (387)
Q Consensus 269 ~~dA~~l~~wie~p~n~~~L~~van~t-SR~GgL~~I~~~i----------------~G~~l~lrf~~dTGDAMGmN 328 (387)
..+..+.++|+.+ |.++|.+++++. ..-|.=.++++.+ +|++=- +.+.-|++-|+|
T Consensus 75 ~~s~~ea~~~i~~--~l~~Ie~~a~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeA--lrI~IG~g~G~N 147 (168)
T TIGR02837 75 LKSLEEARRVIRE--NLPEIERIAESVIKAEGADYKVRVELGKYSFPTKLYGNIVLPAGEYEA--LRILIGEGAGAN 147 (168)
T ss_pred CCCHHHHHHHHHH--hhHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCCcccCCEeccCCceEE--EEEEecCcCCcc
Confidence 4466777889986 999999999877 4444444555543 244444 445678888998
No 30
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=29.06 E-value=36 Score=32.08 Aligned_cols=49 Identities=24% Similarity=0.644 Sum_probs=34.9
Q ss_pred CCCCccchhhhhhhHHHHHHHHHHHHHHHHhHhhhhcCCCcc--ccchHHHHHHHHHH
Q 016586 27 ASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLH--VVTLSEIAAIVSLI 82 (387)
Q Consensus 27 ~~~~lplp~~~~n~~~~~~f~~~~~~l~~~wr~kir~s~plh--~~~~~e~~~~~~~~ 82 (387)
.-.|.-+.+..+|++|.++..-.++|+|++|- |-- +++..=-+.+++++
T Consensus 117 d~Ea~~~SifynNalFl~l~i~~SF~~lk~~~-------p~~Nyi~S~~~asgl~all 167 (170)
T PF07074_consen 117 DYEATTFSIFYNNALFLALVIVFSFYLLKNFS-------PVFNYIFSMSGASGLVALL 167 (170)
T ss_pred hhhheeeehhhhchHHHHHHHHHHHHHHccCC-------ccceeeehHHHHHHHHHHH
Confidence 34577788899999999999999999998774 433 44444444455544
No 31
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=27.88 E-value=1.4e+02 Score=24.06 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHhhh----------cCCcceeeEEEEecCCeEEE
Q 016586 282 PNNFETLAVVFNRS----------SRFARLQHIQCSIAGKNLYI 315 (387)
Q Consensus 282 p~n~~~L~~van~t----------SR~GgL~~I~~~i~G~~l~l 315 (387)
|...++|.++|.+. .-+|.+.+|.+--.|+.||+
T Consensus 25 P~SleeLl~ia~~kfg~~~~~v~~~dgaeIdDI~~IRDgD~L~~ 68 (69)
T PF11834_consen 25 PDSLEELLKIASEKFGFSATKVLNEDGAEIDDIDVIRDGDHLYL 68 (69)
T ss_pred CccHHHHHHHHHHHhCCCceEEEcCCCCEEeEEEEEEcCCEEEE
Confidence 45778888777653 66889999999999999986
No 32
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=27.12 E-value=1.2e+02 Score=32.44 Aligned_cols=43 Identities=14% Similarity=0.320 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhHhhhhcCCCc--cccchHHHHHHHHHHHHHHHH
Q 016586 46 FFSVAYYLLHRWREKIRNSTPL--HVVTLSEIAAIVSLIASFIYL 88 (387)
Q Consensus 46 f~~~~~~l~~~wr~kir~s~pl--h~~~~~e~~~~~~~~as~~yl 88 (387)
+|.+.|.+.|=|-|-+|..... .-++.+.+.+++.+++.++|+
T Consensus 228 lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~ 272 (460)
T PRK13108 228 FYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYI 272 (460)
T ss_pred HHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHH
Confidence 3456677788888999987632 237889998888888887665
No 33
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=25.71 E-value=57 Score=28.78 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=17.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 016586 36 YLTNAIFFTLFFSVAYYLLHR 56 (387)
Q Consensus 36 ~~~n~~~~~~f~~~~~~l~~~ 56 (387)
++.|-+||.+|...+||+..-
T Consensus 2 ~ll~l~ffi~Fl~~~Y~~~y~ 22 (109)
T PF06129_consen 2 WLLYLIFFILFLVLCYFFNYY 22 (109)
T ss_pred cHHHHHHHHHHHHHHHHHhhc
Confidence 567889999999999998754
No 34
>TIGR02206 intg_mem_TP0381 conserved hypothetical integral membrane protein TIGR02206. This model represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=24.91 E-value=1.4e+02 Score=28.55 Aligned_cols=41 Identities=29% Similarity=0.520 Sum_probs=34.5
Q ss_pred hhhcCCCccccchHHHHHHHHHH------HHHHHHHhhcCccccccccC
Q 016586 60 KIRNSTPLHVVTLSEIAAIVSLI------ASFIYLLGFFGIDFVQSFIS 102 (387)
Q Consensus 60 kir~s~plh~~~~~e~~~~~~~~------as~~yl~~ffgi~~~~~~~~ 102 (387)
-+.+|-|||.-+++-+++++.++ -.+.|.+|+.| -+|.++.
T Consensus 63 ~~~e~LPLhlC~ia~~~~~~~l~~~~~~~~~~~~~~gi~G--a~~Ali~ 109 (222)
T TIGR02206 63 TLDESLPLHLCDIAIILAAIMLITKRRWFFQLTYFWGIGG--SFQALLT 109 (222)
T ss_pred chhhcCChhhccHHHHHHHHHHHcCcHHHHHHHHHHHHHH--HHHHHhc
Confidence 57789999999999999988885 46888899877 7888873
No 35
>PRK14645 hypothetical protein; Provisional
Probab=23.27 E-value=5.8e+02 Score=23.36 Aligned_cols=60 Identities=8% Similarity=0.039 Sum_probs=42.7
Q ss_pred CCHHHHHHHHhhh--cCCcceeeEEEEecCCeEEEEEEeecc--ccccchhhhHHHHHHHHHHH
Q 016586 283 NNFETLAVVFNRS--SRFARLQHIQCSIAGKNLYIRFCCTTG--DAMGMNMVSKGVQNVLDFLQ 342 (387)
Q Consensus 283 ~n~~~L~~van~t--SR~GgL~~I~~~i~G~~l~lrf~~dTG--DAMGmNMVnk~~E~v~~~I~ 342 (387)
+|.+.|.+..+.. ..+-.|.+|+..-.|+.-++|+.+|.. +.++..-.....+++-+.|.
T Consensus 6 ~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD 69 (154)
T PRK14645 6 ENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELD 69 (154)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhc
Confidence 4667777776654 567789999988788888899999973 34666666666666655554
No 36
>PF09531 Ndc1_Nup: Nucleoporin protein Ndc1-Nup; InterPro: IPR019049 Ndc1 is a nucleoporin protein that is a component of the Nuclear Pore Complex, and, in fungi, also of the Spindle Pole Body. It consists of six transmembrane segments, three luminal loops, both concentrated at the N terminus and cytoplasmic domains largely at the C terminus, all of which are well conserved.
Probab=21.55 E-value=78 Score=34.10 Aligned_cols=26 Identities=38% Similarity=0.710 Sum_probs=13.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHhhhh
Q 016586 34 PLYLTNAIFFTLFFSVAYYLLHRWREKIR 62 (387)
Q Consensus 34 p~~~~n~~~~~~f~~~~~~l~~~wr~kir 62 (387)
|+|+. |+.+|.+++|.+.|-++++-|
T Consensus 140 ~lyl~---~~~~~l~~~ys~~~~~~d~~~ 165 (602)
T PF09531_consen 140 PLYLW---FSGLFLGLVYSVQHLYFDRDR 165 (602)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHcCCCE
Confidence 55553 344555555555555554433
No 37
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.51 E-value=75 Score=26.27 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhH
Q 016586 37 LTNAIFFTLFFSVAYYLLHRWR 58 (387)
Q Consensus 37 ~~n~~~~~~f~~~~~~l~~~wr 58 (387)
++..+++.++|.+.||++.|=.
T Consensus 3 ~~~l~~~vv~~~i~yf~~~rpq 24 (84)
T TIGR00739 3 LTTLLPLVLIFLIFYFLIIRPQ 24 (84)
T ss_pred HHHHHHHHHHHHHHHHheechH
Confidence 3456788899999999986533
Done!