Query 016586
Match_columns 387
No_of_seqs 288 out of 766
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r4f_A 3-hydroxy-3-methylgluta 100.0 2.9E-78 9.9E-83 610.9 22.4 246 133-378 27-278 (441)
2 1r31_A 3-hydroxy-3-methylgluta 100.0 2.3E-66 8E-71 523.2 17.1 207 159-369 10-229 (428)
3 3qae_A 3-hydroxy-3-methylgluta 100.0 1.3E-63 4.5E-68 506.0 16.1 207 158-369 41-259 (458)
4 3byp_A CZRB protein; membrane 75.7 17 0.00057 28.0 8.6 71 284-354 11-84 (94)
5 3h90_A Ferrous-iron efflux pum 67.1 17 0.00058 33.6 8.0 67 284-350 207-273 (283)
6 2zzt_A Putative uncharacterize 63.1 37 0.0012 27.2 8.3 64 285-348 12-75 (107)
7 3j1z_P YIIP, cation efflux fam 48.9 21 0.00073 33.7 5.3 67 284-350 216-282 (306)
8 2rdd_B UPF0092 membrane protei 41.8 19 0.00065 24.5 2.7 22 38-59 4-25 (37)
9 1zbp_A Hypothetical protein VP 41.6 10 0.00035 36.6 1.8 57 158-229 114-174 (273)
10 3hhl_A RPA0582; alpha-beta-bar 28.4 40 0.0014 29.0 3.3 66 236-306 63-131 (143)
11 1v54_C Cytochrome C oxidase po 22.5 1.1E+02 0.0037 28.7 5.3 21 49-69 50-72 (261)
12 1nh9_A MJA10B, DNA-binding pro 21.4 94 0.0032 24.7 4.0 35 324-360 33-70 (87)
No 1
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...
Probab=100.00 E-value=2.9e-78 Score=610.88 Aligned_cols=246 Identities=47% Similarity=0.763 Sum_probs=239.1
Q ss_pred CCCHHHHHHHHHcCCCCccccccccCChHHHHHHHHHHHHHH--hCCccCCCCCCCCChhhhhhcccccceEEeeeceee
Q 016586 133 SAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKM--TGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGI 210 (387)
Q Consensus 133 ~~~deei~~~v~~g~i~~y~LE~~l~d~~rAv~iRR~~l~~~--tg~sL~~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGV 210 (387)
..+||||++++.+|++|+|+||++++|++||+.+||++|++. ++.++++|+.+++||++++++||||+|||+|||+||
T Consensus 27 ~~~~~e~~~~~~~~~~~~~~le~~~~~~~~a~~~Rr~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~iEN~IG~~~lPvGv 106 (441)
T 2r4f_A 27 FLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGV 106 (441)
T ss_dssp SSCHHHHHHHHHTTSSCGGGHHHHSSSHHHHHHHHHHHHHHHSSSTTGGGGSCCTTCCGGGTBTTTBSSEEEEEEEEEEE
T ss_pred cCCHHHHHHHhhcCCCCCccchhhccChHHHHHHHHHHHHhhhCCChhHHhccccCCChHHHhccccccceeeeecceee
Confidence 358999999999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred ecceEEcCeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHH
Q 016586 211 AGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAV 290 (387)
Q Consensus 211 AGPLlInG~ey~VPMATtEgsLVASanRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~ 290 (387)
||||+|||++|+|||||||||||||+|||||+|+.+||+++++++|+|||+|+|+|+++.+|.++++|+++|+||++|++
T Consensus 107 Agpl~InG~~y~VPMATeE~slVAS~srGaK~i~~~GG~~t~v~~~~MtR~pv~~f~~~~~a~~~~~~i~~~~~~~~l~~ 186 (441)
T 2r4f_A 107 AGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKE 186 (441)
T ss_dssp EEEEEETTEEEEEEEECCCTTHHHHHHHHHHHHHHTTCBEEEEEEEEEEECCEEECSSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred eccEEEcCeEEEeeccccchhHHHHHhHHHHHHHhCCCEEEEECCCcEEEEEEEEECcHhhHHHHHHHHhChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHhhhcCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCccccccceeE---
Q 016586 291 VFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSY--- 367 (387)
Q Consensus 291 van~tSR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ctDrl~~A~~--- 367 (387)
+++++||||||++|++++.|+++|+||.||||||||||||||++|++++||+++||++++++|||||||||+++|.+
T Consensus 187 ~~~stsr~g~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~~~~~sIsgN~~tdkk~~A~n~i~ 266 (441)
T 2r4f_A 187 AFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIE 266 (441)
T ss_dssp HHHTTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEEEESCCSCSCCSSCCHHHHHH
T ss_pred HhhhcccccccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCCCeEEEEecCCcccceeeEEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred -EEeeeeeeeeh
Q 016586 368 -ILLSVTNEIWL 378 (387)
Q Consensus 368 -~~~~v~~e~~~ 378 (387)
++.+|+.|+.+
T Consensus 267 gRGk~V~ae~~i 278 (441)
T 2r4f_A 267 GRGKSVVCEAVI 278 (441)
T ss_dssp CCEEEEEEEEEE
T ss_pred CCceEEEEEEec
Confidence 77788888754
No 2
>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A*
Probab=100.00 E-value=2.3e-66 Score=523.23 Aligned_cols=207 Identities=17% Similarity=0.130 Sum_probs=199.4
Q ss_pred ChHHHHHHHHHHHHHHhC---CccCCCCCCCCChhhhhhcccccceEEeeeceeeecceEEcCeEEeeeccccchhHHHH
Q 016586 159 DCRRAAAIRREALQKMTG---RSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVAS 235 (387)
Q Consensus 159 d~~rAv~iRR~~l~~~tg---~sL~~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGVAGPLlInG~ey~VPMATtEgsLVAS 235 (387)
-+++++++||++|++.++ .++++|+.+++||++++++||||+|||+|||+||||||+|||++|+|||||||||||||
T Consensus 10 f~~~s~~~Rr~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~lP~GvAgpl~InG~~y~VPMATeE~slVAs 89 (428)
T 1r31_A 10 FRNLSPAARLDHIGQLLGLSHDDVSLLANAGALPMDIANGMIENVIGTFELPYAVASNFQINGRDVLVPLVVEEPSIVAA 89 (428)
T ss_dssp GGGSCHHHHHHHHHHHHTCCHHHHHHHHSSCCSCHHHHHHHSSSEEEEEEEEEEEECSCEETTEECCEEEECSCTTHHHH
T ss_pred cccccHHHHHHHHHHhcCCCHHHHHhccccCCChHHHHhcccccccceeecceeEecCEEECCeEEEeeeeeccccHHHH
Confidence 467889999999999998 67889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhhc-----CCcceeeEEEEecC
Q 016586 236 TNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSS-----RFARLQHIQCSIAG 310 (387)
Q Consensus 236 anRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~van~tS-----R~GgL~~I~~~i~G 310 (387)
+|||||+++.+||+++++++|+|||||+|.+ +.|+.++++|+++ ||++|+++||+++ |||||++|++++.|
T Consensus 90 ~srgaK~i~~~GG~~t~~~~~~M~r~~~~~~--~~~a~~~~~~i~~--~~~~l~~~a~~ts~~~~kr~ggl~~i~~~~~g 165 (428)
T 1r31_A 90 ASYMAKLARANGGFTTSSSAPLMHAQVQIVG--IQDPLNARLSLLR--RKDEIIELANRKDQLLNSLGGGCRDIEVHTFA 165 (428)
T ss_dssp HHHHHHHHHTTTCBEEEECCCEEEEEEEEES--CSCHHHHHHHHHH--THHHHHHHHHTTCHHHHHTTCEEEEEEEEEEC
T ss_pred hhHHHHHHHhCCCEEEEECCCcEEeeeEEcc--ccCHHHHHHHHHH--HHHHHHHHHHhhCHHHHhCCcccceEEEEecC
Confidence 9999999999999999999999999999875 6799999999996 9999999999998 99999999999998
Q ss_pred C-----eEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCccccccceeEEE
Q 016586 311 K-----NLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSYIL 369 (387)
Q Consensus 311 ~-----~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ctDrl~~A~~~~ 369 (387)
+ ++|+||.||||||||||||||++|+++++|+++||++.+++||||||+||+++|++++
T Consensus 166 ~~~~g~~l~l~~~~~tgDAMGaNmvn~~~E~v~~~l~~~~~~~~~~~I~sN~~tdk~V~Ae~~i 229 (428)
T 1r31_A 166 DTPRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADLRLARAQVRI 229 (428)
T ss_dssp CCTTCCEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECSCCTTSEEEEEEEE
T ss_pred CcCcCcEEEEEEEEeccccccchHHHHHHHHHHHHHHHhCCCCEEEEEcCccCCCceEEEEEEE
Confidence 7 9999999999999999999999999999999999999999999999999999999986
No 3
>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A
Probab=100.00 E-value=1.3e-63 Score=506.00 Aligned_cols=207 Identities=19% Similarity=0.217 Sum_probs=190.7
Q ss_pred CChHHHHHHHHHHHHHHhCC---ccCCCCC-CCCChhhhhhcccccceEEeeeceeeecceEEcCeEEeeeccccchhHH
Q 016586 158 GDCRRAAAIRREALQKMTGR---SLQGLPL-DGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLV 233 (387)
Q Consensus 158 ~d~~rAv~iRR~~l~~~tg~---sL~~L~~-~~~Dy~~i~g~~iEN~IG~vqIPvGVAGPLlInG~ey~VPMATtEgsLV 233 (387)
+-++.+.++|+++|++.++. +++.|.. ..+| .+++++||||+|||+|||+||||||+|||++|+|||||||||||
T Consensus 41 ~F~k~s~~eR~~~l~~~~~l~~~~~~~l~~~~~l~-~~~~~~~iEN~IG~~~lPvGvAgpl~InG~~y~VPMATeE~slV 119 (458)
T 3qae_A 41 GFSKKSYQERLELLKAQALLSPERQASLEKDEQMS-VTVADQLSENVVGTFSLPYSLVPEVLVNGQEYTVPYVTEEPSVV 119 (458)
T ss_dssp TTTTSCHHHHHHHHHHHTCSCHHHHHHHHTTCCCC-HHHHHHHSSSCCCCCCCCCEEEEEEEETTEEEEEEECCCSTTHH
T ss_pred CccccCHHHHHHHHHHhcCCCHHHHHHHhccCCCC-HHHHhcccceeeeeeecceeeecCEEECCEEEEeeceeccccHH
Confidence 35677889999999999985 3445553 3455 67999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhh-----cCCcceeeEEEEe
Q 016586 234 ASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRS-----SRFARLQHIQCSI 308 (387)
Q Consensus 234 ASanRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~van~t-----SR~GgL~~I~~~i 308 (387)
||+|||||+|+.+||+++++++|+|||||+| +++.|+.++++|+++ |+++|++++|++ +|||||++|++++
T Consensus 120 ASasrGaK~i~~~GG~~t~v~~~~Mtrqv~f--~~~~~a~~~~~~i~~--~~~~l~~~a~~~~~s~~~rgggl~~i~~~~ 195 (458)
T 3qae_A 120 AAASYASKIIKRAGGFTTQVHQRQMIGQVAL--YQVANPKLAQEKIAS--KKAELLELANQAYPSIVKRGGGARDLHVEQ 195 (458)
T ss_dssp HHHHHHHHHHHHTTCBEEEECCCCEEEEEEE--ECCSCHHHHHHHHHH--THHHHHHHHHHHCHHHHTTTCEEEEEEEEE
T ss_pred HHhhHHHHHHHhcCCEEEEEcCCceEeeeEe--cchhhHHHHHHHHHH--HHHHHHHHHHhhCchhhhcccceeEEEEEE
Confidence 9999999999999999999999999999775 788999999999996 999999999963 7999999999998
Q ss_pred ---cCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCccccccceeEEE
Q 016586 309 ---AGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSYIL 369 (387)
Q Consensus 309 ---~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ctDrl~~A~~~~ 369 (387)
.|+++|+||.||||||||||||||++|+++++|++++|++.+++||||||+||+++|++++
T Consensus 196 ~~~~g~~l~lrf~~~TgDAMGaNMvn~~~E~v~~~l~~~~~~~~~~~I~sN~~tdk~V~Ae~~i 259 (458)
T 3qae_A 196 IKGEPDFLVVYIHVDTQEAMGANMLNTMLEALKPVLEELSQGQSLMGILSNYATDSLVTASCRI 259 (458)
T ss_dssp ECSSSCEEEEEEEEECTTSCCHHHHHHHHHHHHHHHHHHHTSEEEEEEECSCCGGGEEEEEEEE
T ss_pred ecCCCCEEEEEEEEeccccccchHHHHHHHHHHHHHHHhCCCceEEEEeCcCCCCceEEEEEEE
Confidence 8999999999999999999999999999999999999999899999999999998888875
No 4
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=75.70 E-value=17 Score=27.95 Aligned_cols=71 Identities=13% Similarity=0.272 Sum_probs=51.5
Q ss_pred CHHHHHHHHhhh--cCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeE-EEEe
Q 016586 284 NFETLAVVFNRS--SRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV-IGIS 354 (387)
Q Consensus 284 n~~~L~~van~t--SR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~v-isIs 354 (387)
..++|++..++. ...-++.+++.+..|...++.+.+...+.|-..-....++.+-+.|++.||..++ +-+-
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~~vtIh~e 84 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQATIHVE 84 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 345667777666 6667888999998898888888888877665444456777777888888986655 4443
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=67.07 E-value=17 Score=33.61 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=51.0
Q ss_pred CHHHHHHHHhhhcCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeE
Q 016586 284 NFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV 350 (387)
Q Consensus 284 n~~~L~~van~tSR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~v 350 (387)
..+++++..++...--++.+++.+..|+..++.+++...+-|-..-..+..+.+-+.|+++||..++
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~v 273 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDV 273 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 3456666666666566788899988999988888888887665555667788888888888987655
No 6
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=63.13 E-value=37 Score=27.18 Aligned_cols=64 Identities=9% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhcCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCC
Q 016586 285 FETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDM 348 (387)
Q Consensus 285 ~~~L~~van~tSR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~ 348 (387)
.++|++..++....-++.++..+..|..+++.+.+...+.|-..-....++.+-+.|++.||+.
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i 75 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDI 75 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 3566666665555567778888888988888888887766654444567777888888889854
No 7
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=48.94 E-value=21 Score=33.67 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=50.1
Q ss_pred CHHHHHHHHhhhcCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeE
Q 016586 284 NFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV 350 (387)
Q Consensus 284 n~~~L~~van~tSR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~v 350 (387)
..+++++..++...--++.+++.+..|+..++.+.+..-+-|-..=.-..+|.+-+.|++.||..++
T Consensus 216 ~~~~I~~~i~~~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v 282 (306)
T 3j1z_P 216 TRQRIKLIAKEDPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEV 282 (306)
T ss_dssp HHHHHHHHHHHSTTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHHhcCCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeE
Confidence 3456667776666666788888888999999888888777665555556778888888888886654
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=41.79 E-value=19 Score=24.45 Aligned_cols=22 Identities=14% Similarity=0.393 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhHh
Q 016586 38 TNAIFFTLFFSVAYYLLHRWRE 59 (387)
Q Consensus 38 ~n~~~~~~f~~~~~~l~~~wr~ 59 (387)
+.-+.+.++|.+.||++-|=..
T Consensus 4 ~~~l~~v~~~~ifYFl~iRPQ~ 25 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMILRPQQ 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHH
Confidence 4556788899999999976443
No 9
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=41.56 E-value=10 Score=36.56 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHHHHhCC--ccCCCCCCCC-ChhhhhhcccccceEEeeeceeeecceE-EcCeEEeeeccccc
Q 016586 158 GDCRRAAAIRREALQKMTGR--SLQGLPLDGF-DYDSILGQCCEMPVGYVQIPVGIAGPLL-LDGFEYSVPMATTE 229 (387)
Q Consensus 158 ~d~~rAv~iRR~~l~~~tg~--sL~~L~~~~~-Dy~~i~g~~iEN~IG~vqIPvGVAGPLl-InG~ey~VPMATtE 229 (387)
||...|.+.|-++++..--. .+++-++..+ |.+...|-.|| ++ .||+.|+||++--+
T Consensus 114 G~~~~A~~lr~~A~e~ap~~~G~~~~~~F~wi~D~D~RlGpv~E---------------~i~~~G~Y~WlPf~~I~ 174 (273)
T 1zbp_A 114 QDYEQVSELALQIEELRQEKGFLANDTSFSDVRDIDDRLGGYIE---------------LFSTAGNYFLVPIASIN 174 (273)
T ss_dssp TCHHHHHHHHHHHHHHCCCCCEEETTEEESCEEESSTTTTTEEE---------------EECTTSCEEEEEGGGEE
T ss_pred CCHHHHHHHHHHHHhcCcccCCCcCCCCcchhhccccCCcceEE---------------EEEeCCeEEEeeHHHhh
Confidence 79999999999998874322 3444444443 66788888898 44 57888999987543
No 10
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=28.40 E-value=40 Score=29.02 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=39.6
Q ss_pred hhhhhhhhhccCCeEEEeccCe---eecceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhhcCCcceeeEEE
Q 016586 236 TNRGCKAIYASGGAASMLLRDG---MTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQC 306 (387)
Q Consensus 236 anRGaKaI~~sGG~~t~v~~d~---MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~van~tSR~GgL~~I~~ 306 (387)
.-.|.|++-. ||....+..+. -.|..+++|+|.+ .+..|.++| ..++++..-......-+|.-...
T Consensus 63 ~~~GG~~l~r-G~~~~~lEG~~~e~~~~~viieFPS~~---aa~a~y~Sp-eYq~a~~~R~~a~~~~rli~~~~ 131 (143)
T 3hhl_A 63 ERLGGXVVWQ-GQFELMLIGPQDEHWDHVFIAEYPSVA---AFVEMIRDP-VYREAVKHRQAAVEDSRLIRLXP 131 (143)
T ss_dssp HHTTCEEEEE-EEEEEEEESCTTCCCSEEEEEEESCHH---HHHHHHHCH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHcCCEEEee-cCCceeEECCCCCCCCeEEEEECCCHH---HHHHHHcCH-HHHHHHHHHHHhhccceeEEecC
Confidence 3457777754 44444455543 4778899999864 456799886 45566555444444444544444
No 11
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=22.45 E-value=1.1e+02 Score=28.71 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=14.5
Q ss_pred HHHHHHHHhHhhhhcCC--Cccc
Q 016586 49 VAYYLLHRWREKIRNST--PLHV 69 (387)
Q Consensus 49 ~~~~l~~~wr~kir~s~--plh~ 69 (387)
+.+-++.-|||-+|.+| |.|-
T Consensus 50 ~~~~~~~W~~dv~~e~~~~g~ht 72 (261)
T 1v54_C 50 NMLTMYQWWRDVIRESTFQGHHT 72 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHhccccccccccCCCCc
Confidence 34444556699999996 7773
No 12
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=21.36 E-value=94 Score=24.72 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=26.2
Q ss_pred cccchhhhHHHHHHHHHHHhhC-CCCeE--EEEeCCCccc
Q 016586 324 AMGMNMVSKGVQNVLDFLQNDF-PDMDV--IGISGMCLVI 360 (387)
Q Consensus 324 AMGmNMVnk~~E~v~~~I~~~f-p~~~v--isIsgN~ctD 360 (387)
||| +.+++++. +++.+.+.| |+.++ +.|++-..+|
T Consensus 33 A~G-~AIskAV~-vaeilk~r~~~~l~v~~i~i~s~~i~~ 70 (87)
T 1nh9_A 33 ARG-KAINKAVD-VAEMIRNRFIKDIKIKKIEIGTDKVKN 70 (87)
T ss_dssp EEG-GGHHHHHH-HHHHHHHHTCTTCEEEEEEEEEEC---
T ss_pred Eec-hHHHHHHH-HHHHHHHhccCCeEEEEEEEeEEEEEc
Confidence 889 67899887 788888888 77875 8888877654
Done!